Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314280 | A0A396GDW0 | 54.286 | 70 | 14 | 2 | 6 | 75 | 1 | 52 | 4.74e-11 | 66.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102070 | Msa1314280 | 0.806856 | 6.712621e-50 | -8.615850e-47 |
| Msa0639460 | Msa1314280 | 0.802921 | 4.459504e-49 | -8.615850e-47 |
| Msa0678930 | Msa1314280 | 0.832167 | 1.103196e-55 | -8.615850e-47 |
| Msa0682360 | Msa1314280 | 0.823903 | 1.078107e-53 | -8.615850e-47 |
| Msa0726140 | Msa1314280 | 0.833500 | 5.146303e-56 | -8.615850e-47 |
| Msa0743810 | Msa1314280 | 0.828960 | 6.721856e-55 | -8.615850e-47 |
| Msa0745060 | Msa1314280 | 0.840290 | 9.504126e-58 | -8.615850e-47 |
| Msa0763260 | Msa1314280 | 0.812847 | 3.450821e-51 | -8.615850e-47 |
| Msa0767720 | Msa1314280 | 0.803040 | 4.214256e-49 | -8.615850e-47 |
| Msa0777870 | Msa1314280 | 0.839167 | 1.862610e-57 | -8.615850e-47 |
| Msa0784290 | Msa1314280 | 0.807441 | 5.047714e-50 | -8.615850e-47 |
| Msa0787600 | Msa1314280 | 0.820666 | 6.079328e-53 | -8.615850e-47 |
| Msa0811270 | Msa1314280 | 0.803179 | 3.943519e-49 | -8.615850e-47 |
| Msa0825860 | Msa1314280 | 0.839029 | 2.023214e-57 | -8.615850e-47 |
| Msa0142220 | Msa1314280 | 0.801805 | 7.572977e-49 | -8.615850e-47 |
| Msa0145750 | Msa1314280 | 0.827789 | 1.288315e-54 | -8.615850e-47 |
| Msa0157810 | Msa1314280 | 0.813028 | 3.148981e-51 | -8.615850e-47 |
| Msa0227480 | Msa1314280 | 0.815584 | 8.579642e-52 | -8.615850e-47 |
| Msa1260100 | Msa1314280 | 0.816978 | 4.184397e-52 | -8.615850e-47 |
| Msa1269670 | Msa1314280 | 0.838528 | 2.725784e-57 | -8.615850e-47 |
| Msa1270230 | Msa1314280 | 0.815463 | 9.126214e-52 | -8.615850e-47 |
| Msa1270240 | Msa1314280 | 0.853425 | 2.410454e-61 | -8.615850e-47 |
| Msa1270270 | Msa1314280 | 0.813097 | 3.041548e-51 | -8.615850e-47 |
| Msa1276040 | Msa1314280 | 0.802214 | 6.237697e-49 | -8.615850e-47 |
| Msa1283330 | Msa1314280 | 0.826031 | 3.391400e-54 | -8.615850e-47 |
| Msa1285930 | Msa1314280 | 0.834331 | 3.188639e-56 | -8.615850e-47 |
| Msa1287800 | Msa1314280 | 0.818493 | 1.904660e-52 | -8.615850e-47 |
| Msa1287810 | Msa1314280 | 0.832753 | 7.897474e-56 | -8.615850e-47 |
| Msa1297210 | Msa1314280 | 0.824366 | 8.394693e-54 | -8.615850e-47 |
| Msa1307890 | Msa1314280 | 0.823084 | 1.675841e-53 | -8.615850e-47 |
| Msa1314280 | Msa1340590 | 0.803331 | 3.668309e-49 | -8.615850e-47 |
| Msa1314280 | Msa1386330 | 0.807090 | 5.990261e-50 | -8.615850e-47 |
| Msa1314280 | Msa1404000 | 0.830189 | 3.379218e-55 | -8.615850e-47 |
| Msa1314280 | Msa1415310 | 0.819064 | 1.412741e-52 | -8.615850e-47 |
| Msa1314280 | Msa1433120 | 0.833028 | 6.745213e-56 | -8.615850e-47 |
| Msa1314280 | Msa1438250 | 0.835247 | 1.875124e-56 | -8.615850e-47 |
| Msa0365500 | Msa1314280 | 0.828189 | 1.032529e-54 | -8.615850e-47 |
| Msa0366580 | Msa1314280 | 0.812228 | 4.711795e-51 | -8.615850e-47 |
| Msa0384800 | Msa1314280 | 0.806502 | 7.973559e-50 | -8.615850e-47 |
| Msa0406120 | Msa1314280 | 0.863567 | 2.269698e-64 | -8.615850e-47 |
| Msa0414410 | Msa1314280 | 0.801075 | 1.068232e-48 | -8.615850e-47 |
| Msa0414420 | Msa1314280 | 0.835114 | 2.025672e-56 | -8.615850e-47 |
| Msa0435230 | Msa1314280 | 0.800015 | 1.756741e-48 | -8.615850e-47 |
| Msa0436780 | Msa1314280 | 0.817286 | 3.567206e-52 | -8.615850e-47 |
| Msa0445210 | Msa1314280 | 0.800668 | 1.293505e-48 | -8.615850e-47 |
| Msa0450570 | Msa1314280 | 0.800323 | 1.520923e-48 | -8.615850e-47 |
| Msa0452620 | Msa1314280 | 0.804925 | 1.709704e-49 | -8.615850e-47 |
| Msa0452900 | Msa1314280 | 0.817708 | 2.865667e-52 | -8.615850e-47 |
| Msa0453120 | Msa1314280 | 0.832364 | 9.861608e-56 | -8.615850e-47 |
| Msa0454910 | Msa1314280 | 0.809006 | 2.341953e-50 | -8.615850e-47 |
| Msa0456200 | Msa1314280 | 0.801079 | 1.066382e-48 | -8.615850e-47 |
| Msa0981370 | Msa1314280 | 0.812672 | 3.768510e-51 | -8.615850e-47 |
| Msa0989060 | Msa1314280 | 0.821457 | 3.997544e-53 | -8.615850e-47 |
| Msa1016280 | Msa1314280 | 0.833410 | 5.418328e-56 | -8.615850e-47 |
| Msa1024240 | Msa1314280 | 0.838472 | 2.817537e-57 | -8.615850e-47 |
| Msa1025360 | Msa1314280 | 0.825971 | 3.502920e-54 | -8.615850e-47 |
| Msa1025370 | Msa1314280 | 0.825320 | 4.999302e-54 | -8.615850e-47 |
| Msa1044830 | Msa1314280 | 0.819513 | 1.116470e-52 | -8.615850e-47 |
| Msa1044840 | Msa1314280 | 0.829042 | 6.421238e-55 | -8.615850e-47 |
| Msa1054790 | Msa1314280 | 0.800789 | 1.222246e-48 | -8.615850e-47 |
| Msa1077870 | Msa1314280 | 0.817541 | 3.125932e-52 | -8.615850e-47 |
| Msa1092990 | Msa1314280 | 0.835228 | 1.896435e-56 | -8.615850e-47 |
| Msa1100980 | Msa1314280 | 0.860296 | 2.280557e-63 | -8.615850e-47 |
| Msa0267000 | Msa1314280 | 0.821043 | 4.979781e-53 | -8.615850e-47 |
| Msa0267010 | Msa1314280 | 0.816190 | 6.284177e-52 | -8.615850e-47 |
| Msa0360510 | Msa1314280 | 0.831511 | 1.602003e-55 | -8.615850e-47 |
| Msa0363300 | Msa1314280 | 0.804566 | 2.030992e-49 | -8.615850e-47 |
| Msa1109440 | Msa1314280 | 0.821943 | 3.085777e-53 | -8.615850e-47 |
| Msa1121200 | Msa1314280 | 0.808470 | 3.048621e-50 | -8.615850e-47 |
| Msa1135740 | Msa1314280 | 0.841485 | 4.617554e-58 | -8.615850e-47 |
| Msa1173920 | Msa1314280 | 0.807048 | 6.114076e-50 | -8.615850e-47 |
| Msa1187940 | Msa1314280 | 0.865132 | 7.372584e-65 | -8.615850e-47 |
| Msa1187950 | Msa1314280 | 0.838113 | 3.488055e-57 | -8.615850e-47 |
| Msa1192640 | Msa1314280 | 0.823718 | 1.191445e-53 | -8.615850e-47 |
| Msa0491590 | Msa1314280 | 0.807931 | 3.970745e-50 | -8.615850e-47 |
| Msa0506270 | Msa1314280 | 0.817304 | 3.533976e-52 | -8.615850e-47 |
| Msa0548060 | Msa1314280 | 0.829202 | 5.873874e-55 | -8.615850e-47 |
| Msa0564890 | Msa1314280 | 0.824055 | 9.930540e-54 | -8.615850e-47 |
| Msa0846330 | Msa1314280 | 0.802534 | 5.360482e-49 | -8.615850e-47 |
| Msa0846350 | Msa1314280 | 0.809647 | 1.706604e-50 | -8.615850e-47 |
| Msa0865320 | Msa1314280 | 0.819071 | 1.407730e-52 | -8.615850e-47 |
| Msa0885280 | Msa1314280 | 0.804637 | 1.963682e-49 | -8.615850e-47 |
| Msa0885290 | Msa1314280 | 0.842954 | 1.885667e-58 | -8.615850e-47 |
| Msa0898080 | Msa1314280 | 0.830771 | 2.434071e-55 | -8.615850e-47 |
| Msa0957860 | Msa1314280 | 0.800568 | 1.355757e-48 | -8.615850e-47 |
| Msa0957960 | Msa1314280 | 0.800030 | 1.744407e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314280 | MtrunA17_Chr8g0343301 | 54.286 | 70 | 14 | 2 | 6 | 75 | 1 | 52 | 9.12e-15 | 66.6 |
| Msa1314280 | MtrunA17_Chr8g0343261 | 44.928 | 69 | 20 | 2 | 6 | 74 | 1 | 51 | 3.15e-11 | 57.4 |
| Msa1314280 | MtrunA17_Chr8g0343361 | 52.941 | 51 | 23 | 1 | 24 | 74 | 2 | 51 | 4.64e-11 | 57.0 |
| Msa1314280 | MtrunA17_Chr8g0343221 | 44.595 | 74 | 23 | 2 | 6 | 79 | 1 | 56 | 8.33e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATCAAGTTGATATTTA+TGG | 0.139857 | 8_4:+13081259 | Msa1314280:CDS |
| CCACTTGATTGTTCATTGTC+TGG | 0.190538 | 8_4:-13081321 | None:intergenic |
| ACCTTTCTTTGCTTCCTCTT+TGG | 0.208827 | 8_4:-13081353 | None:intergenic |
| TTCTTTGCTTCCTCTTTGGT+TGG | 0.305365 | 8_4:-13081349 | None:intergenic |
| TCTTTGCTTCCTCTTTGGTT+GGG | 0.305543 | 8_4:-13081348 | None:intergenic |
| CACTTGATTGTTCATTGTCT+GGG | 0.318928 | 8_4:-13081320 | None:intergenic |
| ATGAAGTCAATATTTATGAT+AGG | 0.361327 | 8_4:+13080918 | None:intergenic |
| CTTTGCTTCCTCTTTGGTTG+GGG | 0.392387 | 8_4:-13081347 | None:intergenic |
| CTGGGTTTCCACGTTGCAAT+TGG | 0.395464 | 8_4:-13081302 | None:intergenic |
| GTTTCCACGTTGCAATTGGT+TGG | 0.472933 | 8_4:-13081298 | None:intergenic |
| GTTACAAAATAAAGAGAAAG+AGG | 0.487115 | 8_4:+13083766 | Msa1314280:intron |
| AAGAGGAAGCAAAGAAAGGT+TGG | 0.488307 | 8_4:+13081356 | Msa1314280:CDS |
| AAAGAAAGGTTGGAGATCAA+AGG | 0.540531 | 8_4:+13081366 | Msa1314280:CDS |
| GGATAATATGAGAGGGACCA+TGG | 0.544110 | 8_4:+13081441 | Msa1314280:CDS |
| ACCAAAGAGGAAGCAAAGAA+AGG | 0.547786 | 8_4:+13081352 | Msa1314280:CDS |
| CGATGGTTGGATAATATGAG+AGG | 0.553530 | 8_4:+13081433 | Msa1314280:CDS |
| AATCAAGTTGATATTTATGG+TGG | 0.565785 | 8_4:+13081262 | Msa1314280:CDS |
| TGCAAGTAAGCTCACAAATG+AGG | 0.580112 | 8_4:+13083802 | Msa1314280:CDS |
| GATAATATGAGAGGGACCAT+GGG | 0.592898 | 8_4:+13081442 | Msa1314280:CDS |
| CCAGACAATGAACAATCAAG+TGG | 0.595978 | 8_4:+13081321 | Msa1314280:CDS |
| GAGGAAGAAGAAGTTACTTG+AGG | 0.616582 | 8_4:+13083821 | Msa1314280:CDS |
| AGTGGAAACCCCAACCAAAG+AGG | 0.641455 | 8_4:+13081339 | Msa1314280:CDS |
| GATGGTTGGATAATATGAGA+GGG | 0.656039 | 8_4:+13081434 | Msa1314280:CDS |
| AACTCCAACCAATTGCAACG+TGG | 0.713283 | 8_4:+13081294 | Msa1314280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTATAGTCTTTTTTTTTT+TGG | + | chr8_4:13081104-13081123 | Msa1314280:intron | 15.0% |
| !! | CTAATATTCACAATTAATAT+AGG | + | chr8_4:13081736-13081755 | Msa1314280:intron | 15.0% |
| !!! | ATAGTTCAATTTTTTTTGTT+TGG | - | chr8_4:13081925-13081944 | None:intergenic | 15.0% |
| !!! | AACTTCAAAATAAATTTGTT+CGG | + | chr8_4:13082844-13082863 | Msa1314280:intron | 15.0% |
| !! | ATTTGTTTCATTTATGAAAT+TGG | - | chr8_4:13083140-13083159 | None:intergenic | 15.0% |
| !!! | AACTAAAAATTGTTGTTGTA+AGG | + | chr8_4:13081069-13081088 | Msa1314280:intron | 20.0% |
| !!! | ACCAATTTTTTCATATTTCA+TGG | + | chr8_4:13081214-13081233 | Msa1314280:intron | 20.0% |
| !! | ACCATGAAATATGAAAAAAT+TGG | - | chr8_4:13081218-13081237 | None:intergenic | 20.0% |
| !!! | AACAATCAAGTTGATATTTA+TGG | + | chr8_4:13081259-13081278 | Msa1314280:CDS | 20.0% |
| !! | TAATAAAGTAAACTTTACGA+CGG | + | chr8_4:13081644-13081663 | Msa1314280:intron | 20.0% |
| !!! | GATTGATCACAATATTTTAA+TGG | + | chr8_4:13082667-13082686 | Msa1314280:intron | 20.0% |
| !!! | CAAATGAATTTTATGAATTG+AGG | + | chr8_4:13082896-13082915 | Msa1314280:intron | 20.0% |
| !! | ATGAATAGATTGCATAAAAT+TGG | - | chr8_4:13083109-13083128 | None:intergenic | 20.0% |
| !!! | CATTTTTCTTAGTTATTTGT+AGG | + | chr8_4:13083177-13083196 | Msa1314280:intron | 20.0% |
| !! | GAGAATTTCAAAAATAAAAG+AGG | - | chr8_4:13083350-13083369 | None:intergenic | 20.0% |
| !!! | TTTTTGAAATTCTCTTATAC+TGG | + | chr8_4:13083356-13083375 | Msa1314280:intron | 20.0% |
| !!! | TTTTGAAATTCTCTTATACT+GGG | + | chr8_4:13083357-13083376 | Msa1314280:intron | 20.0% |
| !! | TTCTAACTATTAATAAGGAT+GGG | - | chr8_4:13083403-13083422 | None:intergenic | 20.0% |
| !! | ATAACTACATAACAAATTTC+TGG | + | chr8_4:13083618-13083637 | Msa1314280:intron | 20.0% |
| !! | TAACTACATAACAAATTTCT+GGG | + | chr8_4:13083619-13083638 | Msa1314280:intron | 20.0% |
| !!! | ATATTTCATGGTTGTTTTGA+AGG | + | chr8_4:13081226-13081245 | Msa1314280:intron | 25.0% |
| !!! | AATCAAGTTGATATTTATGG+TGG | + | chr8_4:13081262-13081281 | Msa1314280:CDS | 25.0% |
| ! | TTGGTTGAGATATAAAAACA+AGG | + | chr8_4:13081408-13081427 | Msa1314280:CDS | 25.0% |
| ! | AGCAACAATAACATTTCAAA+TGG | + | chr8_4:13081483-13081502 | Msa1314280:intron | 25.0% |
| ! | ACAATGCATAAAAATATGCA+AGG | - | chr8_4:13081527-13081546 | None:intergenic | 25.0% |
| !! | AACTGTGACAAATTTTATGA+CGG | + | chr8_4:13081618-13081637 | Msa1314280:intron | 25.0% |
| ! | TTGTGACTGAAATTTAACAA+CGG | - | chr8_4:13081688-13081707 | None:intergenic | 25.0% |
| ! | GTTAAATTTCAGTCACAAAA+TGG | + | chr8_4:13081690-13081709 | Msa1314280:intron | 25.0% |
| !! | GAACACAATAAATCTTTTAG+TGG | + | chr8_4:13081712-13081731 | Msa1314280:intron | 25.0% |
| ! | TTAATATAGGAAAAACCCAA+AGG | + | chr8_4:13081749-13081768 | Msa1314280:intron | 25.0% |
| ! | TAATATAGGAAAAACCCAAA+GGG | + | chr8_4:13081750-13081769 | Msa1314280:intron | 25.0% |
| ! | AACTAAAATTCGATTTCGTT+TGG | + | chr8_4:13082022-13082041 | Msa1314280:intron | 25.0% |
| !!! | TAGTTTGGTTTGAAATAGTT+CGG | + | chr8_4:13082082-13082101 | Msa1314280:intron | 25.0% |
| ! | GTTTAATAATGCTAATACCA+AGG | - | chr8_4:13082532-13082551 | None:intergenic | 25.0% |
| ! | AAGAAGCTTCATTGTTTAAT+TGG | + | chr8_4:13082696-13082715 | Msa1314280:intron | 25.0% |
| !!! | ATCAAATTTTCAAGATCTAC+CGG | + | chr8_4:13082758-13082777 | Msa1314280:intron | 25.0% |
| ! | TAAAGAAACTAAAACAGCTT+TGG | - | chr8_4:13082988-13083007 | None:intergenic | 25.0% |
| ! | ATATCATTACTAGAGTAACA+AGG | + | chr8_4:13083009-13083028 | Msa1314280:intron | 25.0% |
| ! | ATATACTGTAATTGTTAGTG+TGG | + | chr8_4:13083048-13083067 | Msa1314280:intron | 25.0% |
| !!! | GATTGATTTGATGTTATTCA+TGG | + | chr8_4:13083199-13083218 | Msa1314280:intron | 25.0% |
| ! | CTTCTAACTATTAATAAGGA+TGG | - | chr8_4:13083404-13083423 | None:intergenic | 25.0% |
| ! | AAGGCTTCTAACTATTAATA+AGG | - | chr8_4:13083408-13083427 | None:intergenic | 25.0% |
| ! | AATTATCCTAGGATAAGATT+GGG | - | chr8_4:13083448-13083467 | None:intergenic | 25.0% |
| ! | TAATTATCCTAGGATAAGAT+TGG | - | chr8_4:13083449-13083468 | None:intergenic | 25.0% |
| ! | AATCTTATCCTAGGATAATT+AGG | + | chr8_4:13083448-13083467 | Msa1314280:intron | 25.0% |
| ! | ATAAGTATCCTAATTATCCT+AGG | - | chr8_4:13083459-13083478 | None:intergenic | 25.0% |
| ! | AAATTTGTACTAGTGAAAGT+AGG | - | chr8_4:13083716-13083735 | None:intergenic | 25.0% |
| ! | GTTACAAAATAAAGAGAAAG+AGG | + | chr8_4:13083766-13083785 | Msa1314280:intron | 25.0% |
| ! | AATTGTTGTTGTAAGGTATC+AGG | + | chr8_4:13081076-13081095 | Msa1314280:intron | 30.0% |
| GATATAAAAACAAGGATCGA+TGG | + | chr8_4:13081416-13081435 | Msa1314280:CDS | 30.0% | |
| ATAAAAATATGCAAGGTCCA+GGG | - | chr8_4:13081520-13081539 | None:intergenic | 30.0% | |
| !!! | AACAGTTTAGTACGGTTTTT+TGG | - | chr8_4:13081889-13081908 | None:intergenic | 30.0% |
| TGGTACCAATAATAACAGAT+TGG | + | chr8_4:13082042-13082061 | Msa1314280:intron | 30.0% | |
| CTGAACCAATCTGTTATTAT+TGG | - | chr8_4:13082050-13082069 | None:intergenic | 30.0% | |
| AGCTTGAAATGCAAATAGTT+CGG | + | chr8_4:13082108-13082127 | Msa1314280:intron | 30.0% | |
| ATGAGTTACATCAATTGTTG+TGG | - | chr8_4:13082612-13082631 | None:intergenic | 30.0% | |
| !!! | TCACAATATTTTAATGGTGC+AGG | + | chr8_4:13082673-13082692 | Msa1314280:intron | 30.0% |
| ! | ATTTGATGTGACTTGCATTA+TGG | - | chr8_4:13082745-13082764 | None:intergenic | 30.0% |
| TTCATGGAATAACATGTACA+TGG | + | chr8_4:13083215-13083234 | Msa1314280:intron | 30.0% | |
| TCATGGAATAACATGTACAT+GGG | + | chr8_4:13083216-13083235 | Msa1314280:intron | 30.0% | |
| TTCATGACAACATCAAATCA+AGG | - | chr8_4:13083257-13083276 | None:intergenic | 30.0% | |
| TTGATGTTGTCATGAATTTG+CGG | + | chr8_4:13083261-13083280 | Msa1314280:intron | 30.0% | |
| TTACTCAAAGTTCATGCTTA+AGG | + | chr8_4:13083293-13083312 | Msa1314280:intron | 30.0% | |
| CCTTGTTAAAATTGTGATCA+AGG | - | chr8_4:13083494-13083513 | None:intergenic | 30.0% | |
| !! | CCTTGATCACAATTTTAACA+AGG | + | chr8_4:13083491-13083510 | Msa1314280:intron | 30.0% |
| TGTTTGTGTCAGCATAATTA+AGG | + | chr8_4:13083583-13083602 | Msa1314280:intron | 30.0% | |
| TGGGAATGATTAATGAGAAT+TGG | + | chr8_4:13083638-13083657 | Msa1314280:intron | 30.0% | |
| GACAAATCGTATGAGTTGTA+TGG | + | chr8_4:13081174-13081193 | Msa1314280:intron | 35.0% | |
| CACTTGATTGTTCATTGTCT+GGG | - | chr8_4:13081323-13081342 | None:intergenic | 35.0% | |
| AAAGAAAGGTTGGAGATCAA+AGG | + | chr8_4:13081366-13081385 | Msa1314280:CDS | 35.0% | |
| !!! | AAAGGTTTTAGAACAAGCAG+TGG | + | chr8_4:13081384-13081403 | Msa1314280:CDS | 35.0% |
| !!! | TTTTAGAACAAGCAGTGGAT+TGG | + | chr8_4:13081389-13081408 | Msa1314280:CDS | 35.0% |
| TAAAAACAAGGATCGATGGT+TGG | + | chr8_4:13081420-13081439 | Msa1314280:CDS | 35.0% | |
| GATGGTTGGATAATATGAGA+GGG | + | chr8_4:13081434-13081453 | Msa1314280:CDS | 35.0% | |
| ! | GAATGTTGCTATTATACCCA+TGG | - | chr8_4:13081461-13081480 | None:intergenic | 35.0% |
| CATAAAAATATGCAAGGTCC+AGG | - | chr8_4:13081521-13081540 | None:intergenic | 35.0% | |
| ! | TTTTGCGACAGATTTAAGTG+AGG | + | chr8_4:13081578-13081597 | Msa1314280:intron | 35.0% |
| TTTGCGACAGATTTAAGTGA+GGG | + | chr8_4:13081579-13081598 | Msa1314280:intron | 35.0% | |
| ATTATCGCTCAAAACCCTTT+GGG | - | chr8_4:13081767-13081786 | None:intergenic | 35.0% | |
| TAAGGTTGCTTCTTTCGATT+AGG | + | chr8_4:13081849-13081868 | Msa1314280:intron | 35.0% | |
| AAGGTTGCTTCTTTCGATTA+GGG | + | chr8_4:13081850-13081869 | Msa1314280:intron | 35.0% | |
| TCCAGTTCAACAGTTTAGTA+CGG | - | chr8_4:13081897-13081916 | None:intergenic | 35.0% | |
| GAAACTGAACTGAAACAGTT+CGG | + | chr8_4:13081958-13081977 | Msa1314280:intron | 35.0% | |
| CGGTTCAGTTCAAAACAATT+CGG | + | chr8_4:13081978-13081997 | Msa1314280:intron | 35.0% | |
| CAGCTCAAAACAGTTTAGTT+TGG | + | chr8_4:13082067-13082086 | Msa1314280:intron | 35.0% | |
| GCAAACTGTTCAATTCAGTT+CGG | + | chr8_4:13082155-13082174 | Msa1314280:intron | 35.0% | |
| ! | CTGCAACTTTAAAAGAGACT+GGG | - | chr8_4:13082226-13082245 | None:intergenic | 35.0% |
| GGGATTATCTTGAGTTATCA+GGG | - | chr8_4:13082277-13082296 | None:intergenic | 35.0% | |
| TCCCCAATGTCAATTTAGTT+GGG | + | chr8_4:13082462-13082481 | Msa1314280:intron | 35.0% | |
| AGCCCAACTAAATTGACATT+GGG | - | chr8_4:13082467-13082486 | None:intergenic | 35.0% | |
| TAGCCCAACTAAATTGACAT+TGG | - | chr8_4:13082468-13082487 | None:intergenic | 35.0% | |
| AATGCTAATACCAAGGATGA+AGG | - | chr8_4:13082525-13082544 | None:intergenic | 35.0% | |
| ! | TTTGTTTGCTGATCAACTTC+AGG | + | chr8_4:13082563-13082582 | Msa1314280:intron | 35.0% |
| ! | TTGTTTGCTGATCAACTTCA+GGG | + | chr8_4:13082564-13082583 | Msa1314280:intron | 35.0% |
| ATCATAAACCTGTAGCCAAA+GGG | + | chr8_4:13082719-13082738 | Msa1314280:intron | 35.0% | |
| AATGTCTTACATTGACAGCA+CGG | - | chr8_4:13082784-13082803 | None:intergenic | 35.0% | |
| !! | TCCATGAAAATGACTTGCTA+GGG | - | chr8_4:13082961-13082980 | None:intergenic | 35.0% |
| !! | ATCCATGAAAATGACTTGCT+AGG | - | chr8_4:13082962-13082981 | None:intergenic | 35.0% |
| TAACATGTACATGGGCATAA+TGG | + | chr8_4:13083224-13083243 | Msa1314280:intron | 35.0% | |
| AAATTCTCTTATACTGGGCA+GGG | + | chr8_4:13083362-13083381 | Msa1314280:intron | 35.0% | |
| GGTAAGACTCTCAAAATTCA+AGG | - | chr8_4:13083427-13083446 | None:intergenic | 35.0% | |
| CCACTTGATTGTTCATTGTC+TGG | - | chr8_4:13081324-13081343 | None:intergenic | 40.0% | |
| CCAGACAATGAACAATCAAG+TGG | + | chr8_4:13081321-13081340 | Msa1314280:CDS | 40.0% | |
| TCTTTGCTTCCTCTTTGGTT+GGG | - | chr8_4:13081351-13081370 | None:intergenic | 40.0% | |
| TTCTTTGCTTCCTCTTTGGT+TGG | - | chr8_4:13081352-13081371 | None:intergenic | 40.0% | |
| ACCAAAGAGGAAGCAAAGAA+AGG | + | chr8_4:13081352-13081371 | Msa1314280:CDS | 40.0% | |
| ACCTTTCTTTGCTTCCTCTT+TGG | - | chr8_4:13081356-13081375 | None:intergenic | 40.0% | |
| AAGAGGAAGCAAAGAAAGGT+TGG | + | chr8_4:13081356-13081375 | Msa1314280:CDS | 40.0% | |
| CGATGGTTGGATAATATGAG+AGG | + | chr8_4:13081433-13081452 | Msa1314280:CDS | 40.0% | |
| GATAATATGAGAGGGACCAT+GGG | + | chr8_4:13081442-13081461 | Msa1314280:CDS | 40.0% | |
| !! | AAATGGCTTTAAATCCACCC+TGG | + | chr8_4:13081500-13081519 | Msa1314280:intron | 40.0% |
| TTGCGACAGATTTAAGTGAG+GGG | + | chr8_4:13081580-13081599 | Msa1314280:intron | 40.0% | |
| !! | CTTTACGACGGATTTTGTGA+TGG | + | chr8_4:13081656-13081675 | Msa1314280:intron | 40.0% |
| GATTATCGCTCAAAACCCTT+TGG | - | chr8_4:13081768-13081787 | None:intergenic | 40.0% | |
| AGGTTGCTTCTTTCGATTAG+GGG | + | chr8_4:13081851-13081870 | Msa1314280:intron | 40.0% | |
| ACCGTACTAAACTGTTGAAC+TGG | + | chr8_4:13081893-13081912 | Msa1314280:intron | 40.0% | |
| ! | GCTGCAACTTTAAAAGAGAC+TGG | - | chr8_4:13082227-13082246 | None:intergenic | 40.0% |
| TTATCAGGGACACACTCAAT+TGG | - | chr8_4:13082263-13082282 | None:intergenic | 40.0% | |
| GGGGATTATCTTGAGTTATC+AGG | - | chr8_4:13082278-13082297 | None:intergenic | 40.0% | |
| AGCAGACGAATCTTCAAAGA+TGG | - | chr8_4:13082332-13082351 | None:intergenic | 40.0% | |
| TCCTTTATCCTAACCCACTT+AGG | + | chr8_4:13082374-13082393 | Msa1314280:intron | 40.0% | |
| !! | ACCTAAGTGGGTTAGGATAA+AGG | - | chr8_4:13082378-13082397 | None:intergenic | 40.0% |
| TTATCCTAACCCACTTAGGT+TGG | + | chr8_4:13082378-13082397 | Msa1314280:intron | 40.0% | |
| ! | GTGGTATTAGCTTGAGACTT+GGG | + | chr8_4:13082405-13082424 | Msa1314280:intron | 40.0% |
| CTCCCCAATGTCAATTTAGT+TGG | + | chr8_4:13082461-13082480 | Msa1314280:intron | 40.0% | |
| GCCCAACTAAATTGACATTG+GGG | - | chr8_4:13082466-13082485 | None:intergenic | 40.0% | |
| AAGACGAATTCCTTCATCCT+TGG | + | chr8_4:13082512-13082531 | Msa1314280:intron | 40.0% | |
| ! | TGTTTGCTGATCAACTTCAG+GGG | + | chr8_4:13082565-13082584 | Msa1314280:intron | 40.0% |
| GATCATAAACCTGTAGCCAA+AGG | + | chr8_4:13082718-13082737 | Msa1314280:intron | 40.0% | |
| ACTAGAGTAACAAGGTTGAC+TGG | + | chr8_4:13083017-13083036 | Msa1314280:intron | 40.0% | |
| GAAATTCTCTTATACTGGGC+AGG | + | chr8_4:13083361-13083380 | Msa1314280:intron | 40.0% | |
| GTCTTACCCAATCTTATCCT+AGG | + | chr8_4:13083439-13083458 | Msa1314280:intron | 40.0% | |
| TGCAAGTAAGCTCACAAATG+AGG | + | chr8_4:13083802-13083821 | Msa1314280:CDS | 40.0% | |
| AACTCCAACCAATTGCAACG+TGG | + | chr8_4:13081294-13081313 | Msa1314280:CDS | 45.0% | |
| GTTTCCACGTTGCAATTGGT+TGG | - | chr8_4:13081301-13081320 | None:intergenic | 45.0% | |
| CTTTGCTTCCTCTTTGGTTG+GGG | - | chr8_4:13081350-13081369 | None:intergenic | 45.0% | |
| GGATAATATGAGAGGGACCA+TGG | + | chr8_4:13081441-13081460 | Msa1314280:CDS | 45.0% | |
| AAAATATGCAAGGTCCAGGG+TGG | - | chr8_4:13081517-13081536 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr8_4:13081550-13081569 | None:intergenic | 45.0% |
| !! | GACGGATTTTGTGATGGAAG+AGG | + | chr8_4:13081662-13081681 | Msa1314280:intron | 45.0% |
| TAGATCGATGATGTTGGGGT+TGG | - | chr8_4:13081821-13081840 | None:intergenic | 45.0% | |
| CAGCTAGATCGATGATGTTG+GGG | - | chr8_4:13081825-13081844 | None:intergenic | 45.0% | |
| GCAGCTAGATCGATGATGTT+GGG | - | chr8_4:13081826-13081845 | None:intergenic | 45.0% | |
| AGCAGCTAGATCGATGATGT+TGG | - | chr8_4:13081827-13081846 | None:intergenic | 45.0% | |
| GCTTCTTTCGATTAGGGGTA+AGG | + | chr8_4:13081856-13081875 | Msa1314280:intron | 45.0% | |
| ! | CGGTTCGATTCGAAACAGTT+CGG | + | chr8_4:13081998-13082017 | Msa1314280:intron | 45.0% |
| AAGAGACTGGGTCGAAAGTA+GGG | - | chr8_4:13082214-13082233 | None:intergenic | 45.0% | |
| AAAGAGACTGGGTCGAAAGT+AGG | - | chr8_4:13082215-13082234 | None:intergenic | 45.0% | |
| ACACACTCAATTGGTCAGGT+TGG | - | chr8_4:13082254-13082273 | None:intergenic | 45.0% | |
| AGTCTCAAGCTAATACCACC+AGG | - | chr8_4:13082404-13082423 | None:intergenic | 45.0% | |
| ! | GGTGGTATTAGCTTGAGACT+TGG | + | chr8_4:13082404-13082423 | Msa1314280:intron | 45.0% |
| ! | GTTTGCTGATCAACTTCAGG+GGG | + | chr8_4:13082566-13082585 | Msa1314280:intron | 45.0% |
| ! | TGACTTGCATTATGGCCCTT+TGG | - | chr8_4:13082737-13082756 | None:intergenic | 45.0% |
| !! | GCCCTAGCAAGTCATTTTCA+TGG | + | chr8_4:13082957-13082976 | Msa1314280:intron | 45.0% |
| ATGTACATGGGCATAATGGC+AGG | + | chr8_4:13083228-13083247 | Msa1314280:intron | 45.0% | |
| CTGGGTTTCCACGTTGCAAT+TGG | - | chr8_4:13081305-13081324 | None:intergenic | 50.0% | |
| AGTGGAAACCCCAACCAAAG+AGG | + | chr8_4:13081339-13081358 | Msa1314280:CDS | 50.0% | |
| CCTTGTGAGCTTAGCTCAGT+TGG | - | chr8_4:13081555-13081574 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGCTCACA+AGG | + | chr8_4:13081552-13081571 | Msa1314280:intron | 50.0% | |
| CATCGATCTAGCTGCTGCTA+AGG | + | chr8_4:13081831-13081850 | Msa1314280:intron | 50.0% | |
| AGAGACTGGGTCGAAAGTAG+GGG | - | chr8_4:13082213-13082232 | None:intergenic | 50.0% | |
| AGGGACACACTCAATTGGTC+AGG | - | chr8_4:13082258-13082277 | None:intergenic | 50.0% | |
| GAATCGAACCTGAGACCTTG+AGG | - | chr8_4:13082442-13082461 | None:intergenic | 50.0% | |
| CATTATGGCCCTTTGGCTAC+AGG | - | chr8_4:13082730-13082749 | None:intergenic | 50.0% | |
| TCTTACATTGACAGCACGGC+CGG | - | chr8_4:13082780-13082799 | None:intergenic | 50.0% | |
| ATAATCCCCCGCTTCGATCC+AGG | + | chr8_4:13082289-13082308 | Msa1314280:intron | 55.0% | |
| TTCAAGCGCCTGGATCGAAG+CGG | - | chr8_4:13082300-13082319 | None:intergenic | 55.0% | |
| GATCCAGGCGCTTGAAGTGA+GGG | + | chr8_4:13082304-13082323 | Msa1314280:intron | 55.0% | |
| TCGTCTGCTGTTGCGTGTGA+AGG | + | chr8_4:13082343-13082362 | Msa1314280:intron | 55.0% | |
| ! | CAGGCCAACCTAAGTGGGTT+AGG | - | chr8_4:13082385-13082404 | None:intergenic | 55.0% |
| !! | CTAACCCACTTAGGTTGGCC+TGG | + | chr8_4:13082383-13082402 | Msa1314280:intron | 55.0% |
| ACCACCAGGCCAACCTAAGT+GGG | - | chr8_4:13082390-13082409 | None:intergenic | 55.0% | |
| TACCACCAGGCCAACCTAAG+TGG | - | chr8_4:13082391-13082410 | None:intergenic | 55.0% | |
| ! | TGGGAGTATGCTCCTCCTCA+AGG | + | chr8_4:13082424-13082443 | Msa1314280:intron | 55.0% |
| ATGCTCCTCCTCAAGGTCTC+AGG | + | chr8_4:13082431-13082450 | Msa1314280:intron | 55.0% | |
| TCGAACCTGAGACCTTGAGG+AGG | - | chr8_4:13082439-13082458 | None:intergenic | 55.0% | |
| AAGTAGGGGCGGGCATGGTT+CGG | - | chr8_4:13082199-13082218 | None:intergenic | 60.0% | |
| ACTGGGTCGAAAGTAGGGGC+GGG | - | chr8_4:13082209-13082228 | None:intergenic | 60.0% | |
| GACTGGGTCGAAAGTAGGGG+CGG | - | chr8_4:13082210-13082229 | None:intergenic | 60.0% | |
| TCAAGCGCCTGGATCGAAGC+GGG | - | chr8_4:13082299-13082318 | None:intergenic | 60.0% | |
| CGATCCAGGCGCTTGAAGTG+AGG | + | chr8_4:13082303-13082322 | Msa1314280:intron | 60.0% | |
| GATCCCTCACTTCAAGCGCC+TGG | - | chr8_4:13082310-13082329 | None:intergenic | 60.0% | |
| !! | ACCCACTTAGGTTGGCCTGG+TGG | + | chr8_4:13082386-13082405 | Msa1314280:intron | 60.0% |
| GTCGAAAGTAGGGGCGGGCA+TGG | - | chr8_4:13082204-13082223 | None:intergenic | 65.0% | |
| AAGCGCCTGGATCGAAGCGG+GGG | - | chr8_4:13082297-13082316 | None:intergenic | 65.0% | |
| CAAGCGCCTGGATCGAAGCG+GGG | - | chr8_4:13082298-13082317 | None:intergenic | 65.0% | |
| !! | GGCGGGCATGGTTCGGTTCG+GGG | - | chr8_4:13082192-13082211 | None:intergenic | 70.0% |
| !! | GGGCGGGCATGGTTCGGTTC+GGG | - | chr8_4:13082193-13082212 | None:intergenic | 70.0% |
| !! | GGGGCGGGCATGGTTCGGTT+CGG | - | chr8_4:13082194-13082213 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 13080933 | 13083841 | 13080933 | ID=Msa1314280;Name=Msa1314280 |
| chr8_4 | mRNA | 13080933 | 13083841 | 13080933 | ID=Msa1314280-mRNA-1;Parent=Msa1314280;Name=Msa1314280-mRNA-1;_AED=0.53;_eAED=0.54;_QI=0|0|0|0.33|0|0|3|0|94 |
| chr8_4 | exon | 13080933 | 13080939 | 13080933 | ID=Msa1314280-mRNA-1:exon:4929;Parent=Msa1314280-mRNA-1 |
| chr8_4 | exon | 13081248 | 13081463 | 13081248 | ID=Msa1314280-mRNA-1:exon:4930;Parent=Msa1314280-mRNA-1 |
| chr8_4 | exon | 13083780 | 13083841 | 13083780 | ID=Msa1314280-mRNA-1:exon:4931;Parent=Msa1314280-mRNA-1 |
| chr8_4 | CDS | 13080933 | 13080939 | 13080933 | ID=Msa1314280-mRNA-1:cds;Parent=Msa1314280-mRNA-1 |
| chr8_4 | CDS | 13081248 | 13081463 | 13081248 | ID=Msa1314280-mRNA-1:cds;Parent=Msa1314280-mRNA-1 |
| chr8_4 | CDS | 13083780 | 13083841 | 13083780 | ID=Msa1314280-mRNA-1:cds;Parent=Msa1314280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
