Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160280 | XP_013449572.3 | 93.231 | 325 | 22 | 0 | 1 | 325 | 1 | 325 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160280 | sp|Q4V3D9|SSL10_ARATH | 57.681 | 345 | 106 | 1 | 21 | 325 | 30 | 374 | 6.34e-143 | 411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160280 | A0A072UCL7 | 93.231 | 325 | 22 | 0 | 1 | 325 | 1 | 325 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1160280 | 0.805344 | 1.397042e-49 | -8.615850e-47 |
| Msa0657970 | Msa1160280 | 0.828062 | 1.107711e-54 | -8.615850e-47 |
| Msa0661870 | Msa1160280 | 0.826577 | 2.514005e-54 | -8.615850e-47 |
| Msa0157290 | Msa1160280 | 0.804834 | 1.785741e-49 | -8.615850e-47 |
| Msa0157810 | Msa1160280 | 0.800510 | 1.393023e-48 | -8.615850e-47 |
| Msa0200260 | Msa1160280 | 0.813032 | 3.143258e-51 | -8.615850e-47 |
| Msa0235890 | Msa1160280 | 0.808900 | 2.467328e-50 | -8.615850e-47 |
| Msa1082500 | Msa1160280 | 0.813239 | 2.830737e-51 | -8.615850e-47 |
| Msa0243100 | Msa1160280 | 0.801055 | 1.078608e-48 | -8.615850e-47 |
| Msa0334500 | Msa1160280 | 0.804863 | 1.761237e-49 | -8.615850e-47 |
| Msa1160280 | Msa1228190 | 0.809708 | 1.655300e-50 | -8.615850e-47 |
| Msa1160280 | Msa1254750 | 0.803812 | 2.915070e-49 | -8.615850e-47 |
| Msa1160280 | Msa1271290 | 0.802712 | 4.924761e-49 | -8.615850e-47 |
| Msa1160280 | Msa1423990 | 0.815869 | 7.412729e-52 | -8.615850e-47 |
| Msa1160280 | Msa1438250 | 0.811934 | 5.459613e-51 | -8.615850e-47 |
| Msa1160280 | Msa1444370 | 0.806824 | 6.819360e-50 | -8.615850e-47 |
| Msa0484780 | Msa1160280 | 0.812281 | 4.587745e-51 | -8.615850e-47 |
| Msa0533430 | Msa1160280 | 0.813939 | 1.985809e-51 | -8.615850e-47 |
| Msa0580610 | Msa1160280 | 0.807354 | 5.266014e-50 | -8.615850e-47 |
| Msa0880140 | Msa1160280 | 0.805468 | 1.315644e-49 | -8.615850e-47 |
| Msa0884920 | Msa1160280 | 0.815828 | 7.566794e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160280 | MtrunA17_Chr7g0256561 | 93.231 | 325 | 22 | 0 | 1 | 325 | 11 | 335 | 0.0 | 627 |
| Msa1160280 | MtrunA17_Chr5g0443561 | 77.914 | 326 | 68 | 2 | 1 | 325 | 1 | 323 | 0.0 | 516 |
| Msa1160280 | MtrunA17_Chr7g0256571 | 69.730 | 370 | 66 | 4 | 1 | 325 | 1 | 369 | 0.0 | 509 |
| Msa1160280 | MtrunA17_Chr7g0256581 | 69.890 | 362 | 64 | 2 | 9 | 325 | 8 | 369 | 1.19e-180 | 503 |
| Msa1160280 | MtrunA17_Chr2g0322241 | 48.830 | 342 | 125 | 4 | 31 | 325 | 57 | 395 | 1.39e-105 | 314 |
| Msa1160280 | MtrunA17_Chr4g0025341 | 48.246 | 342 | 127 | 6 | 31 | 325 | 53 | 391 | 4.26e-103 | 307 |
| Msa1160280 | MtrunA17_Chr2g0329531 | 49.533 | 321 | 114 | 4 | 47 | 320 | 82 | 401 | 4.07e-102 | 305 |
| Msa1160280 | MtrunA17_Chr7g0256591 | 44.848 | 330 | 132 | 4 | 45 | 324 | 56 | 385 | 5.62e-98 | 294 |
| Msa1160280 | MtrunA17_Chr7g0256601 | 44.713 | 331 | 132 | 4 | 45 | 324 | 86 | 416 | 1.04e-97 | 295 |
| Msa1160280 | MtrunA17_Chr4g0062001 | 41.049 | 324 | 170 | 3 | 20 | 323 | 12 | 334 | 3.09e-81 | 249 |
| Msa1160280 | MtrunA17_Chr4g0062031 | 41.176 | 323 | 173 | 5 | 13 | 324 | 9 | 325 | 1.52e-79 | 245 |
| Msa1160280 | MtrunA17_Chr4g0062021 | 40.118 | 339 | 177 | 5 | 1 | 319 | 10 | 342 | 3.27e-78 | 242 |
| Msa1160280 | MtrunA17_Chr8g0376581 | 38.253 | 332 | 185 | 4 | 12 | 324 | 1 | 331 | 1.22e-77 | 240 |
| Msa1160280 | MtrunA17_Chr2g0307721 | 42.810 | 306 | 155 | 5 | 38 | 324 | 38 | 342 | 8.63e-68 | 226 |
| Msa1160280 | MtrunA17_Chr2g0307721 | 40.789 | 304 | 160 | 5 | 38 | 322 | 490 | 792 | 7.27e-63 | 213 |
| Msa1160280 | MtrunA17_Chr2g0307721 | 44.156 | 77 | 43 | 0 | 99 | 175 | 343 | 419 | 1.52e-14 | 74.3 |
| Msa1160280 | MtrunA17_Chr4g0020271 | 40.556 | 180 | 91 | 1 | 152 | 315 | 2 | 181 | 1.95e-40 | 140 |
| Msa1160280 | MtrunA17_Chr8g0370761 | 38.961 | 231 | 116 | 8 | 47 | 275 | 78 | 285 | 5.54e-37 | 136 |
| Msa1160280 | MtrunA17_Chr8g0370791 | 37.991 | 229 | 121 | 6 | 47 | 275 | 78 | 285 | 1.66e-36 | 135 |
| Msa1160280 | MtrunA17_Chr4g0062051 | 40.782 | 179 | 95 | 4 | 1 | 175 | 2 | 173 | 1.70e-33 | 122 |
| Msa1160280 | MtrunA17_Chr4g0061871 | 43.750 | 112 | 63 | 0 | 179 | 290 | 20 | 131 | 9.79e-26 | 99.8 |
| Msa1160280 | MtrunA17_Chr8g0370771 | 35.556 | 135 | 86 | 1 | 141 | 275 | 17 | 150 | 6.08e-25 | 100 |
| Msa1160280 | MtrunA17_Chr2g0300841 | 32.579 | 221 | 134 | 5 | 57 | 272 | 58 | 268 | 1.71e-24 | 102 |
| Msa1160280 | MtrunA17_Chr2g0300851 | 26.774 | 310 | 175 | 6 | 57 | 325 | 51 | 349 | 3.32e-24 | 101 |
| Msa1160280 | MtrunA17_Chr4g0062061 | 41.026 | 117 | 61 | 1 | 216 | 324 | 4 | 120 | 1.39e-23 | 94.0 |
| Msa1160280 | MtrunA17_Chr2g0300861 | 31.602 | 231 | 138 | 6 | 57 | 282 | 70 | 285 | 5.54e-23 | 97.8 |
| Msa1160280 | MtrunA17_Chr8g0370801 | 36.667 | 90 | 56 | 1 | 141 | 230 | 20 | 108 | 1.04e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160280 | AT3G57030.1 | 57.681 | 345 | 106 | 1 | 21 | 325 | 30 | 374 | 6.45e-144 | 411 |
| Msa1160280 | AT1G08470.1 | 48.974 | 341 | 124 | 5 | 31 | 325 | 53 | 389 | 3.80e-105 | 313 |
| Msa1160280 | AT5G22020.3 | 48.387 | 341 | 128 | 4 | 30 | 325 | 58 | 395 | 4.45e-105 | 313 |
| Msa1160280 | AT5G22020.1 | 48.387 | 341 | 128 | 4 | 30 | 325 | 58 | 395 | 4.45e-105 | 313 |
| Msa1160280 | AT5G22020.2 | 48.387 | 341 | 128 | 4 | 30 | 325 | 58 | 395 | 4.45e-105 | 313 |
| Msa1160280 | AT2G41290.1 | 48.810 | 336 | 123 | 6 | 38 | 325 | 42 | 376 | 8.78e-98 | 294 |
| Msa1160280 | AT3G59530.3 | 44.277 | 332 | 126 | 5 | 37 | 321 | 74 | 393 | 1.12e-90 | 276 |
| Msa1160280 | AT3G59530.2 | 44.277 | 332 | 126 | 5 | 37 | 321 | 74 | 393 | 1.12e-90 | 276 |
| Msa1160280 | AT3G59530.1 | 44.277 | 332 | 126 | 5 | 37 | 321 | 74 | 393 | 1.12e-90 | 276 |
| Msa1160280 | AT3G57010.1 | 43.296 | 358 | 155 | 6 | 9 | 322 | 14 | 367 | 1.75e-90 | 275 |
| Msa1160280 | AT3G57020.1 | 43.020 | 351 | 155 | 5 | 13 | 322 | 20 | 366 | 5.10e-89 | 271 |
| Msa1160280 | AT2G41300.1 | 47.097 | 310 | 121 | 3 | 53 | 322 | 84 | 390 | 6.06e-89 | 272 |
| Msa1160280 | AT3G57020.2 | 41.880 | 351 | 145 | 5 | 13 | 322 | 20 | 352 | 6.59e-83 | 255 |
| Msa1160280 | AT1G74020.1 | 43.299 | 291 | 152 | 4 | 47 | 325 | 38 | 327 | 7.58e-73 | 228 |
| Msa1160280 | AT1G74010.1 | 42.321 | 293 | 151 | 7 | 47 | 325 | 37 | 325 | 5.46e-67 | 213 |
| Msa1160280 | AT1G74000.1 | 40.893 | 291 | 159 | 4 | 47 | 325 | 40 | 329 | 7.97e-65 | 207 |
| Msa1160280 | AT3G51440.1 | 33.852 | 257 | 148 | 7 | 24 | 279 | 48 | 283 | 2.27e-32 | 124 |
| Msa1160280 | AT3G51430.1 | 32.685 | 257 | 151 | 8 | 24 | 279 | 48 | 283 | 5.00e-30 | 117 |
| Msa1160280 | AT3G51430.2 | 31.752 | 274 | 164 | 9 | 24 | 295 | 48 | 300 | 1.58e-29 | 116 |
| Msa1160280 | AT3G51450.1 | 32.189 | 233 | 138 | 7 | 48 | 279 | 70 | 283 | 1.86e-28 | 113 |
| Msa1160280 | AT3G51420.1 | 31.154 | 260 | 156 | 8 | 34 | 289 | 56 | 296 | 2.64e-28 | 113 |
Find 84 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTCAAATGGCCAGTTT+TGG | 0.255370 | 7_4:-50137824 | Msa1160280:CDS |
| CTTTCACTTCACCAATGATT+TGG | 0.275944 | 7_4:-50139138 | Msa1160280:CDS |
| CTTCAGCTTCTGTCGCTACT+TGG | 0.284065 | 7_4:+50139168 | None:intergenic |
| CTTCCTTTCGAAATCTTCTA+AGG | 0.294652 | 7_4:+50137746 | None:intergenic |
| ACTGCCATGCAATATATTAT+TGG | 0.307190 | 7_4:-50137568 | Msa1160280:three_prime_UTR |
| GTATTGACTTTACCAGCTTT+TGG | 0.326444 | 7_4:+50137885 | None:intergenic |
| TTACTTAAAGCAACACCATT+AGG | 0.327844 | 7_4:+50137975 | None:intergenic |
| TAGCTGAAACCTCAAATTGC+AGG | 0.351850 | 7_4:-50137932 | Msa1160280:CDS |
| GAGTCTTGTATTTGATAGTC+AGG | 0.358568 | 7_4:-50141290 | Msa1160280:CDS |
| TCGATAGTAACTCCTTATAT+TGG | 0.365461 | 7_4:-50137669 | Msa1160280:CDS |
| TTCATTGATGTCCAAATCAT+TGG | 0.369450 | 7_4:+50139127 | None:intergenic |
| AAACTATAAACACCAATATA+AGG | 0.369830 | 7_4:+50137657 | None:intergenic |
| CCTCAAATTGCAGGATTCTT+CGG | 0.377343 | 7_4:-50137923 | Msa1160280:CDS |
| AATACAAAGCAACCCAAAAC+TGG | 0.382779 | 7_4:+50137811 | None:intergenic |
| CTTGTTAGTGGCGACAAGAC+TGG | 0.382913 | 7_4:-50138062 | Msa1160280:CDS |
| CCGAAGAATCCTGCAATTTG+AGG | 0.386133 | 7_4:+50137923 | None:intergenic |
| ATTCTTCGGCTATGGCTTCA+TGG | 0.387806 | 7_4:-50137909 | Msa1160280:CDS |
| CTCAACGTCGTAGGACCTGC+AGG | 0.415420 | 7_4:-50139203 | Msa1160280:CDS |
| ACTCTCCGGCCCAACGGCTC+TGG | 0.432501 | 7_4:+50141309 | None:intergenic |
| TTACTATTACCTATTGGAAC+TGG | 0.433388 | 7_4:+50141183 | None:intergenic |
| CTTATATTGTCGGGAAAACC+TGG | 0.434775 | 7_4:+50137849 | None:intergenic |
| TGAATTTCTCCTTATATTGT+CGG | 0.438415 | 7_4:+50137839 | None:intergenic |
| AAGAGAAAGATGGAAAACTT+TGG | 0.439332 | 7_4:-50137698 | Msa1160280:CDS |
| CCGCAAATATGCTCTAACTT+TGG | 0.444704 | 7_4:+50139293 | None:intergenic |
| GGTGTTGCTTTAAGTAAAGA+TGG | 0.445655 | 7_4:-50137969 | Msa1160280:CDS |
| TTGCTGTCACCAGTTCCAAT+AGG | 0.446183 | 7_4:-50141192 | Msa1160280:intron |
| TGCTCTAACTTTGGTGCGAA+TGG | 0.454921 | 7_4:+50139302 | None:intergenic |
| CAAAGTTAGAGCATATTTGC+GGG | 0.456089 | 7_4:-50139292 | Msa1160280:CDS |
| GAATTTCTCCTTATATTGTC+GGG | 0.456126 | 7_4:+50137840 | None:intergenic |
| GAAGTGAAAGTCTTATTAAG+AGG | 0.463897 | 7_4:-50138008 | Msa1160280:CDS |
| TGTATTTGATAGTCAGGGTG+AGG | 0.466377 | 7_4:-50141284 | Msa1160280:CDS |
| TATATTGCTGATGCCTACCT+TGG | 0.468786 | 7_4:-50139227 | Msa1160280:CDS |
| TGCAGCATGAAGGCTGTCCT+TGG | 0.469119 | 7_4:+50141429 | None:intergenic |
| GCTGTAAAGCTGAGTGATAA+AGG | 0.469960 | 7_4:-50137783 | Msa1160280:CDS |
| CAAATCATTGGTGAAGTGAA+AGG | 0.483098 | 7_4:+50139139 | None:intergenic |
| CATATTTGCGGGAGGCCACT+AGG | 0.483919 | 7_4:-50139281 | Msa1160280:CDS |
| CCATCCGCCACGCCGGTGTA+CGG | 0.487653 | 7_4:+50141259 | None:intergenic |
| ATTGCAGGATTCTTCGGCTA+TGG | 0.489136 | 7_4:-50137917 | Msa1160280:CDS |
| GTCCTACGACGTTGAGGCCA+AGG | 0.495996 | 7_4:+50139210 | None:intergenic |
| CCGTACACCGGCGTGGCGGA+TGG | 0.496328 | 7_4:-50141259 | Msa1160280:CDS |
| CATCACCAGAGCCGTTGGGC+CGG | 0.496567 | 7_4:-50141314 | Msa1160280:CDS |
| TTCAGCTTCTGTCGCTACTT+GGG | 0.498548 | 7_4:+50139169 | None:intergenic |
| CTCCACATCACCAGAGCCGT+TGG | 0.507712 | 7_4:-50141319 | Msa1160280:CDS |
| CATGAAGAACATTAGTGAAG+TGG | 0.508115 | 7_4:-50137721 | Msa1160280:CDS |
| TGGCTTCATGGACCAAAAGC+TGG | 0.515075 | 7_4:-50137897 | Msa1160280:CDS |
| GCCCAACGGCTCTGGTGATG+TGG | 0.521937 | 7_4:+50141317 | None:intergenic |
| AAATCATTGGTGAAGTGAAA+GGG | 0.525518 | 7_4:+50139140 | None:intergenic |
| TTGTTAGTGGCGACAAGACT+GGG | 0.525775 | 7_4:-50138061 | Msa1160280:CDS |
| CCAAAGTTAGAGCATATTTG+CGG | 0.526459 | 7_4:-50139293 | Msa1160280:CDS |
| AGTGAAGTGGAAGAGAAAGA+TGG | 0.526795 | 7_4:-50137708 | Msa1160280:CDS |
| TCTGATCCAGCAATGAGAAC+CGG | 0.535635 | 7_4:+50141367 | None:intergenic |
| AATATAAGGAGAAATTCAAA+TGG | 0.544861 | 7_4:-50137834 | Msa1160280:CDS |
| AGCTTCTGTCGCTACTTGGG+TGG | 0.549553 | 7_4:+50139172 | None:intergenic |
| CAGGGTGAGGGTCCGTACAC+CGG | 0.549555 | 7_4:-50141271 | Msa1160280:CDS |
| TCCACATCACCAGAGCCGTT+GGG | 0.552486 | 7_4:-50141318 | Msa1160280:CDS |
| TTATCAAACCTTAGTCCTAG+TGG | 0.561618 | 7_4:+50139266 | None:intergenic |
| TCAACGTCGTAGGACCTGCA+GGG | 0.563338 | 7_4:-50139202 | Msa1160280:CDS |
| AGCACAGCCTCCATGCTGCT+CGG | 0.567065 | 7_4:-50141345 | Msa1160280:CDS |
| GTATTTGATAGTCAGGGTGA+GGG | 0.576173 | 7_4:-50141283 | Msa1160280:CDS |
| ATTGCCAATAATATATTGCA+TGG | 0.582944 | 7_4:+50137564 | None:intergenic |
| ACACCGGCGTGGCGGATGGT+CGG | 0.585681 | 7_4:-50141255 | Msa1160280:CDS |
| CTATCAAATACAAGACTCTC+CGG | 0.588596 | 7_4:+50141295 | None:intergenic |
| AAACCTTAGAAGATTTCGAA+AGG | 0.590400 | 7_4:-50137749 | Msa1160280:CDS |
| CAACGTCGTAGGACCTGCAG+GGG | 0.602016 | 7_4:-50139201 | Msa1160280:CDS |
| AATCCGACCATCCGCCACGC+CGG | 0.605536 | 7_4:+50141252 | None:intergenic |
| TAAATTAAACATGAACTCCA+AGG | 0.609943 | 7_4:-50141446 | Msa1160280:exon |
| AAGTGGGAAGGGAAGAAACG+TGG | 0.611297 | 7_4:-50141226 | Msa1160280:CDS |
| AGTCTTGTATTTGATAGTCA+GGG | 0.619502 | 7_4:-50141289 | Msa1160280:CDS |
| GGGAAGGGAAGAAACGTGGT+TGG | 0.626723 | 7_4:-50141222 | Msa1160280:CDS |
| CTGCAGGTCCTACGACGTTG+AGG | 0.627691 | 7_4:+50139204 | None:intergenic |
| TGAGGGTCCGTACACCGGCG+TGG | 0.632382 | 7_4:-50141266 | Msa1160280:CDS |
| TGAGAAAAGTTGCAGCATGA+AGG | 0.632922 | 7_4:+50141419 | None:intergenic |
| TTGGACATCAATGAAGATGA+AGG | 0.636594 | 7_4:-50139119 | Msa1160280:CDS |
| TACAAGACTCTCCGGCCCAA+CGG | 0.639722 | 7_4:+50141303 | None:intergenic |
| TACCTTGGCCTCAACGTCGT+AGG | 0.642314 | 7_4:-50139212 | Msa1160280:CDS |
| CAACACCATTAGGAAAAGCA+AGG | 0.647500 | 7_4:+50137985 | None:intergenic |
| AGTTAGAGCATATTTGCGGG+AGG | 0.660243 | 7_4:-50139289 | Msa1160280:CDS |
| TGTGGAGTAACCGAGCAGCA+TGG | 0.660998 | 7_4:+50141335 | None:intergenic |
| TACGACGTTGAGGCCAAGGT+AGG | 0.668648 | 7_4:+50139214 | None:intergenic |
| GGGTCCGTACACCGGCGTGG+CGG | 0.673340 | 7_4:-50141263 | Msa1160280:CDS |
| CAAGTAGCGACAGAAGCTGA+AGG | 0.676661 | 7_4:-50139167 | Msa1160280:CDS |
| AACGTCGTAGGACCTGCAGG+GGG | 0.727874 | 7_4:-50139200 | Msa1160280:CDS |
| GGAGTAACCGAGCAGCATGG+AGG | 0.744968 | 7_4:+50141338 | None:intergenic |
| TTAGTGGCGACAAGACTGGG+AGG | 0.768612 | 7_4:-50138058 | Msa1160280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAATACTTTATAAATTTT+CGG | + | chr7_4:50138570-50138589 | None:intergenic | 10.0% |
| !!! | ACAATTTTTTAAAACTTAAA+GGG | + | chr7_4:50138697-50138716 | None:intergenic | 10.0% |
| !!! | TACAATTTTTTAAAACTTAA+AGG | + | chr7_4:50138698-50138717 | None:intergenic | 10.0% |
| !!! | AGTTTTAAAAAATTGTAAAT+TGG | - | chr7_4:50138701-50138720 | Msa1160280:intron | 10.0% |
| !!! | TTACAATTTTAAAAATTTGA+GGG | + | chr7_4:50138728-50138747 | None:intergenic | 10.0% |
| !!! | TTTACAATTTTAAAAATTTG+AGG | + | chr7_4:50138729-50138748 | None:intergenic | 10.0% |
| !!! | AATTTTAGAATTGAAAAATA+TGG | + | chr7_4:50138800-50138819 | None:intergenic | 10.0% |
| !!! | TTACAAATTTTAGAAAAATT+TGG | + | chr7_4:50138826-50138845 | None:intergenic | 10.0% |
| !! | ATTAATTGAATCATTTAAAT+AGG | - | chr7_4:50138923-50138942 | Msa1160280:intron | 10.0% |
| !!! | AAATGAAATGAAATTTTAAT+GGG | + | chr7_4:50140334-50140353 | None:intergenic | 10.0% |
| !!! | TAAATGAAATGAAATTTTAA+TGG | + | chr7_4:50140335-50140354 | None:intergenic | 10.0% |
| !!! | CTATATTTTTATATAACATA+TGG | + | chr7_4:50140655-50140674 | None:intergenic | 10.0% |
| !! | GTTATATAAAAATATAGTAA+TGG | - | chr7_4:50140658-50140677 | Msa1160280:intron | 10.0% |
| !! | TTATTAGTAAGACTTAAATT+CGG | - | chr7_4:50137849-50137868 | Msa1160280:CDS | 15.0% |
| !!! | AATTTTATTCAAGTTACATA+TGG | - | chr7_4:50137988-50138007 | Msa1160280:CDS | 15.0% |
| !!! | ATGTCTATAGTTTTTTTTTA+CGG | + | chr7_4:50138254-50138273 | None:intergenic | 15.0% |
| !! | GAAATTCTTAAAATTTCATT+TGG | + | chr7_4:50138594-50138613 | None:intergenic | 15.0% |
| !!! | ATTTTTCAAATTTTGTAAGT+AGG | - | chr7_4:50138650-50138669 | Msa1160280:intron | 15.0% |
| !!! | ATTAATTTGCAAAATTTAAG+GGG | + | chr7_4:50138777-50138796 | None:intergenic | 15.0% |
| !!! | GATTAATTTGCAAAATTTAA+GGG | + | chr7_4:50138778-50138797 | None:intergenic | 15.0% |
| !!! | TTTTTACAAACATTTATGTT+TGG | + | chr7_4:50138896-50138915 | None:intergenic | 15.0% |
| !! | TTGTAGAATAAAGATAATTA+CGG | + | chr7_4:50139253-50139272 | None:intergenic | 15.0% |
| !! | AGTATTATAACATTATAGAT+TGG | - | chr7_4:50140183-50140202 | Msa1160280:intron | 15.0% |
| !! | CATTATAATGACTATATTAA+GGG | + | chr7_4:50140406-50140425 | None:intergenic | 15.0% |
| !! | ACATTATAATGACTATATTA+AGG | + | chr7_4:50140407-50140426 | None:intergenic | 15.0% |
| !! | GCAAATTAATAATACGTATT+AGG | + | chr7_4:50137967-50137986 | None:intergenic | 20.0% |
| !!! | GGTTATATTACTTTTTTGAA+CGG | + | chr7_4:50138117-50138136 | None:intergenic | 20.0% |
| !!! | TTGTTTAATGTTTTGATACA+GGG | + | chr7_4:50138152-50138171 | None:intergenic | 20.0% |
| !!! | TTTGTTTAATGTTTTGATAC+AGG | + | chr7_4:50138153-50138172 | None:intergenic | 20.0% |
| !!! | TGTCTATAGTTTTTTTTTAC+GGG | + | chr7_4:50138253-50138272 | None:intergenic | 20.0% |
| !! | AAAAACTATAGACATTTGAT+AGG | - | chr7_4:50138259-50138278 | Msa1160280:intron | 20.0% |
| !! | CCATATTCTTAATAGTTTAT+CGG | + | chr7_4:50138349-50138368 | None:intergenic | 20.0% |
| !!! | GGATTAATTTGCAAAATTTA+AGG | + | chr7_4:50138779-50138798 | None:intergenic | 20.0% |
| !! | TGTAGAATAAAGATAATTAC+GGG | + | chr7_4:50139252-50139271 | None:intergenic | 20.0% |
| !! | CTATTAAAACTAAAGTACAA+TGG | + | chr7_4:50139461-50139480 | None:intergenic | 20.0% |
| !! | GTATTTCGTAAAAAAATAGT+TGG | + | chr7_4:50139952-50139971 | None:intergenic | 20.0% |
| !!! | TTCAAGATTTTCCTTAATTA+AGG | - | chr7_4:50140021-50140040 | Msa1160280:intron | 20.0% |
| !!! | TTTTAAAATTTCTTCTTGCA+TGG | - | chr7_4:50140456-50140475 | Msa1160280:intron | 20.0% |
| !! | AATATAAGGAGAAATTCAAA+TGG | - | chr7_4:50141086-50141105 | Msa1160280:intron | 20.0% |
| !! | AAACTATAAACACCAATATA+AGG | + | chr7_4:50141266-50141285 | None:intergenic | 20.0% |
| ! | TAAATTAAACATGAACTCCA+AGG | - | chr7_4:50137474-50137493 | Msa1160280:three_prime_UTR | 25.0% |
| ! | CTTCTCTATTATTCTTTCTT+CGG | - | chr7_4:50137792-50137811 | Msa1160280:CDS | 25.0% |
| ! | TTTAATCAGTACATTATCTC+TGG | + | chr7_4:50137926-50137945 | None:intergenic | 25.0% |
| !! | TATTCAAGTTACATATGGAA+TGG | - | chr7_4:50137993-50138012 | Msa1160280:CDS | 25.0% |
| ! | GTAATATAACCGATAACTTA+AGG | - | chr7_4:50138126-50138145 | Msa1160280:intron | 25.0% |
| !!! | GTCTATAGTTTTTTTTTACG+GGG | + | chr7_4:50138252-50138271 | None:intergenic | 25.0% |
| ! | CCGATAAACTATTAAGAATA+TGG | - | chr7_4:50138346-50138365 | Msa1160280:intron | 25.0% |
| !!! | TCTCATTTTTAGAAAAGTGT+TGG | - | chr7_4:50138430-50138449 | Msa1160280:intron | 25.0% |
| ! | TAGAGTTATAGACTAATTTC+TGG | + | chr7_4:50138492-50138511 | None:intergenic | 25.0% |
| !! | AGAAATTAGTCTATAACTCT+AGG | - | chr7_4:50138491-50138510 | Msa1160280:intron | 25.0% |
| !! | TCGTTGATTATTTATTGTGT+TGG | - | chr7_4:50138514-50138533 | Msa1160280:intron | 25.0% |
| ! | GAGTAAAAGAGTAAAACTAA+GGG | + | chr7_4:50138540-50138559 | None:intergenic | 25.0% |
| ! | TGAGTAAAAGAGTAAAACTA+AGG | + | chr7_4:50138541-50138560 | None:intergenic | 25.0% |
| ! | GGAACAATTTAAAAACTATG+GGG | + | chr7_4:50138676-50138695 | None:intergenic | 25.0% |
| ! | GGGAACAATTTAAAAACTAT+GGG | + | chr7_4:50138677-50138696 | None:intergenic | 25.0% |
| ! | AGGGAACAATTTAAAAACTA+TGG | + | chr7_4:50138678-50138697 | None:intergenic | 25.0% |
| !! | TTTGGTTTATCTATTGAGTT+AGG | + | chr7_4:50139029-50139048 | None:intergenic | 25.0% |
| ! | AAATTGTGAAAGAATGTTTC+AGG | - | chr7_4:50139372-50139391 | Msa1160280:intron | 25.0% |
| ! | AATTGTGAAAGAATGTTTCA+GGG | - | chr7_4:50139373-50139392 | Msa1160280:intron | 25.0% |
| !!! | TTAATAGCTTCTTTTTTGTC+AGG | - | chr7_4:50139474-50139493 | Msa1160280:intron | 25.0% |
| !! | GTTGTACCATTATATTTTCA+AGG | - | chr7_4:50139580-50139599 | Msa1160280:intron | 25.0% |
| ! | CTAAGGTTTGATAAGAAAAA+TGG | - | chr7_4:50139663-50139682 | Msa1160280:intron | 25.0% |
| ! | AAAGAAGATAGATTTCATTG+TGG | + | chr7_4:50139903-50139922 | None:intergenic | 25.0% |
| ! | CCTTAATTAAGGTTCTATTT+CGG | - | chr7_4:50140032-50140051 | Msa1160280:intron | 25.0% |
| !! | TATTGGAGAATAATTTTGGA+TGG | + | chr7_4:50140239-50140258 | None:intergenic | 25.0% |
| !! | ATCGTATTGGAGAATAATTT+TGG | + | chr7_4:50140243-50140262 | None:intergenic | 25.0% |
| ! | ATACAAAATCCCTCTAATTT+GGG | + | chr7_4:50140276-50140295 | None:intergenic | 25.0% |
| ! | AATACAAAATCCCTCTAATT+TGG | + | chr7_4:50140277-50140296 | None:intergenic | 25.0% |
| ! | TTATAGTGTATCAAAGTATG+AGG | - | chr7_4:50140720-50140739 | Msa1160280:intron | 25.0% |
| ! | TAACAGAATGATCTATATGT+TGG | - | chr7_4:50140803-50140822 | Msa1160280:intron | 25.0% |
| !!! | TATACACTTTTACTTGTTAG+TGG | - | chr7_4:50140846-50140865 | Msa1160280:intron | 25.0% |
| ! | TGAATTTCTCCTTATATTGT+CGG | + | chr7_4:50141084-50141103 | None:intergenic | 25.0% |
| ! | ATTGCCAATAATATATTGCA+TGG | + | chr7_4:50141359-50141378 | None:intergenic | 25.0% |
| ! | AGTCTTGTATTTGATAGTCA+GGG | - | chr7_4:50137631-50137650 | Msa1160280:three_prime_UTR | 30.0% |
| TTACTATTACCTATTGGAAC+TGG | + | chr7_4:50137740-50137759 | None:intergenic | 30.0% | |
| TGGGTATTACTATTACCTAT+TGG | + | chr7_4:50137746-50137765 | None:intergenic | 30.0% | |
| AGGTAATAGTAATACCCATT+TGG | - | chr7_4:50137748-50137767 | Msa1160280:CDS | 30.0% | |
| TTATCTCTGGATAGTTTAAG+AGG | + | chr7_4:50137913-50137932 | None:intergenic | 30.0% | |
| GAATGGATCATATCAAAGTT+TGG | - | chr7_4:50138035-50138054 | Msa1160280:CDS | 30.0% | |
| AATTCGTTTCAATAGTCTAG+CGG | + | chr7_4:50138081-50138100 | None:intergenic | 30.0% | |
| AGAATATGGTCTGATGTATT+TGG | - | chr7_4:50138360-50138379 | Msa1160280:intron | 30.0% | |
| !! | TTTTTAAGCATCTGATGATG+TGG | - | chr7_4:50138398-50138417 | Msa1160280:intron | 30.0% |
| !! | TTTTAAGCATCTGATGATGT+GGG | - | chr7_4:50138399-50138418 | Msa1160280:intron | 30.0% |
| !!! | CATTTTTAGAAAAGTGTTGG+TGG | - | chr7_4:50138433-50138452 | Msa1160280:intron | 30.0% |
| GTCAACTTCTTAAATACACT+CGG | - | chr7_4:50138461-50138480 | Msa1160280:intron | 30.0% | |
| ! | AGTTATAGACTAATTTCTGG+AGG | + | chr7_4:50138489-50138508 | None:intergenic | 30.0% |
| AACCGTTCAAAACTACAAAT+TGG | - | chr7_4:50138751-50138770 | Msa1160280:intron | 30.0% | |
| ATCTATTGAGTTAGGATTTG+TGG | + | chr7_4:50139021-50139040 | None:intergenic | 30.0% | |
| GAGAGAAAGAGAATGATAAA+AGG | - | chr7_4:50139162-50139181 | Msa1160280:CDS | 30.0% | |
| GAAATAAAAAATGTCACGTG+AGG | - | chr7_4:50139190-50139209 | Msa1160280:CDS | 30.0% | |
| GAATAAAGATAATTACGGGT+TGG | + | chr7_4:50139248-50139267 | None:intergenic | 30.0% | |
| ! | TCTCTGTCTTTAGTTTCAAA+CGG | - | chr7_4:50139273-50139292 | Msa1160280:CDS | 30.0% |
| CTGAAAACAGATAGAAAGTT+AGG | + | chr7_4:50139336-50139355 | None:intergenic | 30.0% | |
| !! | CCATTATATTTTCAAGGTCA+CGG | - | chr7_4:50139586-50139605 | Msa1160280:intron | 30.0% |
| AAATCATTGGTGAAGTGAAA+GGG | + | chr7_4:50139783-50139802 | None:intergenic | 30.0% | |
| TTCATTGATGTCCAAATCAT+TGG | + | chr7_4:50139796-50139815 | None:intergenic | 30.0% | |
| TAGATTTCATTGTGGAAAAG+AGG | + | chr7_4:50139895-50139914 | None:intergenic | 30.0% | |
| CCGAAATAGAACCTTAATTA+AGG | + | chr7_4:50140035-50140054 | None:intergenic | 30.0% | |
| !! | TTTTTAACTCCCCAAATTAG+AGG | - | chr7_4:50140263-50140282 | Msa1160280:intron | 30.0% |
| !! | TTTTAACTCCCCAAATTAGA+GGG | - | chr7_4:50140264-50140283 | Msa1160280:intron | 30.0% |
| TACAAAATCCCTCTAATTTG+GGG | + | chr7_4:50140275-50140294 | None:intergenic | 30.0% | |
| ! | TTAATGGGAAGACTTTTGAA+GGG | + | chr7_4:50140319-50140338 | None:intergenic | 30.0% |
| ! | TTTAATGGGAAGACTTTTGA+AGG | + | chr7_4:50140320-50140339 | None:intergenic | 30.0% |
| ACATGGTTGAATATTTGATC+TGG | + | chr7_4:50140514-50140533 | None:intergenic | 30.0% | |
| TCTAATGTCAACTAAACACA+TGG | + | chr7_4:50140531-50140550 | None:intergenic | 30.0% | |
| !!! | TGTTGGTCACTTTTATTTTC+AGG | - | chr7_4:50140820-50140839 | Msa1160280:intron | 30.0% |
| !! | GAAGTGAAAGTCTTATTAAG+AGG | - | chr7_4:50140912-50140931 | Msa1160280:intron | 30.0% |
| TTACTTAAAGCAACACCATT+AGG | + | chr7_4:50140948-50140967 | None:intergenic | 30.0% | |
| ! | AATACTTTTGTTGATCTTCC+AGG | - | chr7_4:50141053-50141072 | Msa1160280:intron | 30.0% |
| GAATTTCTCCTTATATTGTC+GGG | + | chr7_4:50141083-50141102 | None:intergenic | 30.0% | |
| ! | AAATTCAAATGGCCAGTTTT+GGG | - | chr7_4:50141097-50141116 | Msa1160280:intron | 30.0% |
| AAACCTTAGAAGATTTCGAA+AGG | - | chr7_4:50141171-50141190 | Msa1160280:intron | 30.0% | |
| AAGAGAAAGATGGAAAACTT+TGG | - | chr7_4:50141222-50141241 | Msa1160280:CDS | 30.0% | |
| TCGATAGTAACTCCTTATAT+TGG | - | chr7_4:50141251-50141270 | Msa1160280:CDS | 30.0% | |
| ACTGCCATGCAATATATTAT+TGG | - | chr7_4:50141352-50141371 | Msa1160280:CDS | 30.0% | |
| ! | CATTTTCACACTCTTTTCAC+CGG | - | chr7_4:50137534-50137553 | Msa1160280:three_prime_UTR | 35.0% |
| CTATCAAATACAAGACTCTC+CGG | + | chr7_4:50137628-50137647 | None:intergenic | 35.0% | |
| ! | GAGTCTTGTATTTGATAGTC+AGG | - | chr7_4:50137630-50137649 | Msa1160280:three_prime_UTR | 35.0% |
| ! | AGAGAAGAAACTTTGAAGAG+TGG | + | chr7_4:50137779-50137798 | None:intergenic | 35.0% |
| ! | GTTTATAGTTTTCTCGTGAG+TGG | - | chr7_4:50137871-50137890 | Msa1160280:CDS | 35.0% |
| GTGAGTGGTAGAAAAAATCA+AGG | - | chr7_4:50137886-50137905 | Msa1160280:CDS | 35.0% | |
| TATGGAATGGCTTAGTAGTT+TGG | - | chr7_4:50138006-50138025 | Msa1160280:CDS | 35.0% | |
| ATGGAATGGCTTAGTAGTTT+GGG | - | chr7_4:50138007-50138026 | Msa1160280:CDS | 35.0% | |
| ! | TAGTAGTTTGGGTTTGTGAA+TGG | - | chr7_4:50138018-50138037 | Msa1160280:CDS | 35.0% |
| ! | ATTTGGGACCCTTAAACTTA+TGG | - | chr7_4:50138185-50138204 | Msa1160280:intron | 35.0% |
| ACATGGGTCCATAAGTTTAA+GGG | + | chr7_4:50138196-50138215 | None:intergenic | 35.0% | |
| TACATGGGTCCATAAGTTTA+AGG | + | chr7_4:50138197-50138216 | None:intergenic | 35.0% | |
| AAGACCATGACATAGTACAT+GGG | + | chr7_4:50138212-50138231 | None:intergenic | 35.0% | |
| ! | TTTAAGCATCTGATGATGTG+GGG | - | chr7_4:50138400-50138419 | Msa1160280:intron | 35.0% |
| !!! | GGCCAATTTGTAGTTTTGAA+CGG | + | chr7_4:50138756-50138775 | None:intergenic | 35.0% |
| ! | CTAACTCATAAGAGTGTGTT+TGG | + | chr7_4:50138988-50139007 | None:intergenic | 35.0% |
| AGTTAGGATTTGTGGAACAT+TGG | + | chr7_4:50139013-50139032 | None:intergenic | 35.0% | |
| !! | ATGCTCGGATTGACTTATTT+TGG | + | chr7_4:50139047-50139066 | None:intergenic | 35.0% |
| TCGTAGAATAAGGATATGCT+CGG | + | chr7_4:50139062-50139081 | None:intergenic | 35.0% | |
| GTATCACTACTCGTAGAATA+AGG | + | chr7_4:50139072-50139091 | None:intergenic | 35.0% | |
| AGTAGTGATACATTGACCAA+TGG | - | chr7_4:50139081-50139100 | Msa1160280:CDS | 35.0% | |
| ATAAAAAATGTCACGTGAGG+TGG | - | chr7_4:50139193-50139212 | Msa1160280:CDS | 35.0% | |
| ATGAGTGGTATGGGAAAAAA+AGG | - | chr7_4:50139219-50139238 | Msa1160280:CDS | 35.0% | |
| TTTCATATTGCAAGCAAGCA+TGG | - | chr7_4:50139307-50139326 | Msa1160280:CDS | 35.0% | |
| !!! | TAGCTTCTTTTTTGTCAGGA+AGG | - | chr7_4:50139478-50139497 | Msa1160280:intron | 35.0% |
| CCGTGACCTTGAAAATATAA+TGG | + | chr7_4:50139589-50139608 | None:intergenic | 35.0% | |
| CCAAAGTTAGAGCATATTTG+CGG | - | chr7_4:50139627-50139646 | Msa1160280:intron | 35.0% | |
| CAAAGTTAGAGCATATTTGC+GGG | - | chr7_4:50139628-50139647 | Msa1160280:intron | 35.0% | |
| TTATCAAACCTTAGTCCTAG+TGG | + | chr7_4:50139657-50139676 | None:intergenic | 35.0% | |
| CAAATCATTGGTGAAGTGAA+AGG | + | chr7_4:50139784-50139803 | None:intergenic | 35.0% | |
| CTTTCACTTCACCAATGATT+TGG | - | chr7_4:50139782-50139801 | Msa1160280:intron | 35.0% | |
| TTGGACATCAATGAAGATGA+AGG | - | chr7_4:50139801-50139820 | Msa1160280:intron | 35.0% | |
| GTTCTATTTCGGAGTTTGAA+GGG | - | chr7_4:50140043-50140062 | Msa1160280:intron | 35.0% | |
| TTCTATTTCGGAGTTTGAAG+GGG | - | chr7_4:50140044-50140063 | Msa1160280:intron | 35.0% | |
| GGGGAGTTAAAAAATCGTAT+TGG | + | chr7_4:50140256-50140275 | None:intergenic | 35.0% | |
| GGGTATGGTACTTAGAAAAA+AGG | + | chr7_4:50140364-50140383 | None:intergenic | 35.0% | |
| ! | GACTATATTAAGGGTATGCT+TGG | + | chr7_4:50140397-50140416 | None:intergenic | 35.0% |
| TATCTCAAACCAACACCATA+AGG | + | chr7_4:50140700-50140719 | None:intergenic | 35.0% | |
| ! | TCTTTCAGTGGTGTCAATTT+CGG | - | chr7_4:50140749-50140768 | Msa1160280:intron | 35.0% |
| !! | GGTGTTGCTTTAAGTAAAGA+TGG | - | chr7_4:50140951-50140970 | Msa1160280:intron | 35.0% |
| !!! | GTATTGACTTTACCAGCTTT+TGG | + | chr7_4:50141038-50141057 | None:intergenic | 35.0% |
| ! | GAAATTCAAATGGCCAGTTT+TGG | - | chr7_4:50141096-50141115 | Msa1160280:intron | 35.0% |
| AATACAAAGCAACCCAAAAC+TGG | + | chr7_4:50141112-50141131 | None:intergenic | 35.0% | |
| CTTCCTTTCGAAATCTTCTA+AGG | + | chr7_4:50141177-50141196 | None:intergenic | 35.0% | |
| CATGAAGAACATTAGTGAAG+TGG | - | chr7_4:50141199-50141218 | Msa1160280:CDS | 35.0% | |
| TGAGAAAAGTTGCAGCATGA+AGG | + | chr7_4:50137504-50137523 | None:intergenic | 40.0% | |
| ! | TGTATTTGATAGTCAGGGTG+AGG | - | chr7_4:50137636-50137655 | Msa1160280:exon | 40.0% |
| ! | GTATTTGATAGTCAGGGTGA+GGG | - | chr7_4:50137637-50137656 | Msa1160280:exon | 40.0% |
| GAAGAGTGGAAACACCAAAT+GGG | + | chr7_4:50137765-50137784 | None:intergenic | 40.0% | |
| TGAAGAGTGGAAACACCAAA+TGG | + | chr7_4:50137766-50137785 | None:intergenic | 40.0% | |
| GATACAGGGCCTTAAGTTAT+CGG | + | chr7_4:50138138-50138157 | None:intergenic | 40.0% | |
| CAAGACCATGACATAGTACA+TGG | + | chr7_4:50138213-50138232 | None:intergenic | 40.0% | |
| ! | GTACTATGTCATGGTCTTGA+CGG | - | chr7_4:50138214-50138233 | Msa1160280:intron | 40.0% |
| GAATGGAGGGTTTGTCATAT+GGG | + | chr7_4:50139111-50139130 | None:intergenic | 40.0% | |
| AGAATGGAGGGTTTGTCATA+TGG | + | chr7_4:50139112-50139131 | None:intergenic | 40.0% | |
| CTTACATCAAACTTGCCACA+TGG | + | chr7_4:50139141-50139160 | None:intergenic | 40.0% | |
| AGGTGGTATATGAGTGGTAT+GGG | - | chr7_4:50139210-50139229 | Msa1160280:CDS | 40.0% | |
| CCGCAAATATGCTCTAACTT+TGG | + | chr7_4:50139630-50139649 | None:intergenic | 40.0% | |
| TATATTGCTGATGCCTACCT+TGG | - | chr7_4:50139693-50139712 | Msa1160280:intron | 40.0% | |
| GGTTCTATTTCGGAGTTTGA+AGG | - | chr7_4:50140042-50140061 | Msa1160280:intron | 40.0% | |
| AGTTTGAAGGGGAGAGATTT+GGG | - | chr7_4:50140055-50140074 | Msa1160280:intron | 40.0% | |
| GTATGCTTGGAAGTTTAGGA+GGG | + | chr7_4:50140384-50140403 | None:intergenic | 40.0% | |
| ! | AAGGGTATGCTTGGAAGTTT+AGG | + | chr7_4:50140388-50140407 | None:intergenic | 40.0% |
| ATGAGGTTCGATTCTTTCAG+TGG | - | chr7_4:50140737-50140756 | Msa1160280:intron | 40.0% | |
| CAACACCATTAGGAAAAGCA+AGG | + | chr7_4:50140938-50140957 | None:intergenic | 40.0% | |
| TAGCTGAAACCTCAAATTGC+AGG | - | chr7_4:50140988-50141007 | Msa1160280:intron | 40.0% | |
| CCTCAAATTGCAGGATTCTT+CGG | - | chr7_4:50140997-50141016 | Msa1160280:intron | 40.0% | |
| CTTATATTGTCGGGAAAACC+TGG | + | chr7_4:50141074-50141093 | None:intergenic | 40.0% | |
| ! | CAGGTTTTCCCGACAATATA+AGG | - | chr7_4:50141072-50141091 | Msa1160280:intron | 40.0% |
| GCTGTAAAGCTGAGTGATAA+AGG | - | chr7_4:50141137-50141156 | Msa1160280:intron | 40.0% | |
| AGTGAAGTGGAAGAGAAAGA+TGG | - | chr7_4:50141212-50141231 | Msa1160280:CDS | 40.0% | |
| !!! | TTTTCACCGGTTCTCATTGC+TGG | - | chr7_4:50137547-50137566 | Msa1160280:three_prime_UTR | 45.0% |
| TCTGATCCAGCAATGAGAAC+CGG | + | chr7_4:50137556-50137575 | None:intergenic | 45.0% | |
| !!! | GGATGGTCGGATTTTGAAGT+GGG | - | chr7_4:50137678-50137697 | Msa1160280:CDS | 45.0% |
| !!! | GTCGGATTTTGAAGTGGGAA+GGG | - | chr7_4:50137683-50137702 | Msa1160280:CDS | 45.0% |
| TTGCTGTCACCAGTTCCAAT+AGG | - | chr7_4:50137728-50137747 | Msa1160280:CDS | 45.0% | |
| TGGACCCATGTACTATGTCA+TGG | - | chr7_4:50138205-50138224 | Msa1160280:intron | 45.0% | |
| TTGTCATATGGGATGGCCAT+TGG | + | chr7_4:50139100-50139119 | None:intergenic | 45.0% | |
| ! | ACATGGAGGTGTAGAATGGA+GGG | + | chr7_4:50139124-50139143 | None:intergenic | 45.0% |
| ACATCAAACTTGCCACATGG+AGG | + | chr7_4:50139138-50139157 | None:intergenic | 45.0% | |
| GAGGTGGTATATGAGTGGTA+TGG | - | chr7_4:50139209-50139228 | Msa1160280:CDS | 45.0% | |
| ! | TGCTCTAACTTTGGTGCGAA+TGG | + | chr7_4:50139621-50139640 | None:intergenic | 45.0% |
| AGTTAGAGCATATTTGCGGG+AGG | - | chr7_4:50139631-50139650 | Msa1160280:intron | 45.0% | |
| TTCAGCTTCTGTCGCTACTT+GGG | + | chr7_4:50139754-50139773 | None:intergenic | 45.0% | |
| GAGTTTGAAGGGGAGAGATT+TGG | - | chr7_4:50140054-50140073 | Msa1160280:intron | 45.0% | |
| GTTTGAAGGGGAGAGATTTG+GGG | - | chr7_4:50140056-50140075 | Msa1160280:intron | 45.0% | |
| CTTGGAAGTTTAGGAGGGTA+TGG | + | chr7_4:50140379-50140398 | None:intergenic | 45.0% | |
| GGTATGCTTGGAAGTTTAGG+AGG | + | chr7_4:50140385-50140404 | None:intergenic | 45.0% | |
| ! | GTAATGGAACCCGTTTGAGT+TGG | - | chr7_4:50140674-50140693 | Msa1160280:intron | 45.0% |
| ACCATAAGGCCAACTCAAAC+GGG | + | chr7_4:50140686-50140705 | None:intergenic | 45.0% | |
| CACCATAAGGCCAACTCAAA+CGG | + | chr7_4:50140687-50140706 | None:intergenic | 45.0% | |
| !! | TTGAGTTGGCCTTATGGTGT+TGG | - | chr7_4:50140688-50140707 | Msa1160280:intron | 45.0% |
| TTGTTAGTGGCGACAAGACT+GGG | - | chr7_4:50140859-50140878 | Msa1160280:intron | 45.0% | |
| !! | AGAGGCCTTGCTTTTCCTAA+TGG | - | chr7_4:50140930-50140949 | Msa1160280:intron | 45.0% |
| CCGAAGAATCCTGCAATTTG+AGG | + | chr7_4:50141000-50141019 | None:intergenic | 45.0% | |
| ATTGCAGGATTCTTCGGCTA+TGG | - | chr7_4:50141003-50141022 | Msa1160280:intron | 45.0% | |
| ATTCTTCGGCTATGGCTTCA+TGG | - | chr7_4:50141011-50141030 | Msa1160280:intron | 45.0% | |
| !! | ACAAAATAAAATAAAAAATT+TGG | - | chr7_4:50138168-50138187 | Msa1160280:intron | 5.0% |
| !! | CAAAATAAAATAAAAAATTT+GGG | - | chr7_4:50138169-50138188 | Msa1160280:intron | 5.0% |
| !! | CGGATGGTCGGATTTTGAAG+TGG | - | chr7_4:50137677-50137696 | Msa1160280:CDS | 50.0% |
| !!! | GGTCGGATTTTGAAGTGGGA+AGG | - | chr7_4:50137682-50137701 | Msa1160280:CDS | 50.0% |
| AAGTGGGAAGGGAAGAAACG+TGG | - | chr7_4:50137694-50137713 | Msa1160280:CDS | 50.0% | |
| ! | TTTTTACGGGGTCGAGCCAT+AGG | + | chr7_4:50138240-50138259 | None:intergenic | 50.0% |
| GGAGGGTTTGTCATATGGGA+TGG | + | chr7_4:50139107-50139126 | None:intergenic | 50.0% | |
| ! | CACATGGAGGTGTAGAATGG+AGG | + | chr7_4:50139125-50139144 | None:intergenic | 50.0% |
| CTCCATTCTACACCTCCATG+TGG | - | chr7_4:50139123-50139142 | Msa1160280:CDS | 50.0% | |
| ! | TGCCACATGGAGGTGTAGAA+TGG | + | chr7_4:50139128-50139147 | None:intergenic | 50.0% |
| CACGTGAGGTGGTATATGAG+TGG | - | chr7_4:50139204-50139223 | Msa1160280:CDS | 50.0% | |
| CTTCAGCTTCTGTCGCTACT+TGG | + | chr7_4:50139755-50139774 | None:intergenic | 50.0% | |
| CAAGTAGCGACAGAAGCTGA+AGG | - | chr7_4:50139753-50139772 | Msa1160280:intron | 50.0% | |
| AAGGGGAGAGATTTGGGGAA+AGG | - | chr7_4:50140061-50140080 | Msa1160280:intron | 50.0% | |
| !! | ACCCGTTTGAGTTGGCCTTA+TGG | - | chr7_4:50140682-50140701 | Msa1160280:intron | 50.0% |
| CTTGTTAGTGGCGACAAGAC+TGG | - | chr7_4:50140858-50140877 | Msa1160280:intron | 50.0% | |
| TGGCTTCATGGACCAAAAGC+TGG | - | chr7_4:50141023-50141042 | Msa1160280:intron | 50.0% | |
| TGCAGCATGAAGGCTGTCCT+TGG | + | chr7_4:50137494-50137513 | None:intergenic | 55.0% | |
| TGTGGAGTAACCGAGCAGCA+TGG | + | chr7_4:50137588-50137607 | None:intergenic | 55.0% | |
| TCCACATCACCAGAGCCGTT+GGG | - | chr7_4:50137602-50137621 | Msa1160280:three_prime_UTR | 55.0% | |
| TACAAGACTCTCCGGCCCAA+CGG | + | chr7_4:50137620-50137639 | None:intergenic | 55.0% | |
| GGGAAGGGAAGAAACGTGGT+TGG | - | chr7_4:50137698-50137717 | Msa1160280:CDS | 55.0% | |
| ! | GTCATGGTCTTGACGGCCTA+TGG | - | chr7_4:50138221-50138240 | Msa1160280:intron | 55.0% |
| CATATTTGCGGGAGGCCACT+AGG | - | chr7_4:50139639-50139658 | Msa1160280:intron | 55.0% | |
| TACGACGTTGAGGCCAAGGT+AGG | + | chr7_4:50139709-50139728 | None:intergenic | 55.0% | |
| TACCTTGGCCTCAACGTCGT+AGG | - | chr7_4:50139708-50139727 | Msa1160280:intron | 55.0% | |
| TCAACGTCGTAGGACCTGCA+GGG | - | chr7_4:50139718-50139737 | Msa1160280:intron | 55.0% | |
| AGCTTCTGTCGCTACTTGGG+TGG | + | chr7_4:50139751-50139770 | None:intergenic | 55.0% | |
| TTAGTGGCGACAAGACTGGG+AGG | - | chr7_4:50140862-50140881 | Msa1160280:intron | 55.0% | |
| AGCACAGCCTCCATGCTGCT+CGG | - | chr7_4:50137575-50137594 | Msa1160280:three_prime_UTR | 60.0% | |
| GGAGTAACCGAGCAGCATGG+AGG | + | chr7_4:50137585-50137604 | None:intergenic | 60.0% | |
| CTCCACATCACCAGAGCCGT+TGG | - | chr7_4:50137601-50137620 | Msa1160280:three_prime_UTR | 60.0% | |
| GTCCTACGACGTTGAGGCCA+AGG | + | chr7_4:50139713-50139732 | None:intergenic | 60.0% | |
| CTGCAGGTCCTACGACGTTG+AGG | + | chr7_4:50139719-50139738 | None:intergenic | 60.0% | |
| CTCAACGTCGTAGGACCTGC+AGG | - | chr7_4:50139717-50139736 | Msa1160280:intron | 60.0% | |
| CAACGTCGTAGGACCTGCAG+GGG | - | chr7_4:50139719-50139738 | Msa1160280:intron | 60.0% | |
| AACGTCGTAGGACCTGCAGG+GGG | - | chr7_4:50139720-50139739 | Msa1160280:intron | 60.0% | |
| ! | GCCCAACGGCTCTGGTGATG+TGG | + | chr7_4:50137606-50137625 | None:intergenic | 65.0% |
| CATCACCAGAGCCGTTGGGC+CGG | - | chr7_4:50137606-50137625 | Msa1160280:three_prime_UTR | 65.0% | |
| CAGGGTGAGGGTCCGTACAC+CGG | - | chr7_4:50137649-50137668 | Msa1160280:exon | 65.0% | |
| AATCCGACCATCCGCCACGC+CGG | + | chr7_4:50137671-50137690 | None:intergenic | 65.0% | |
| GCGGGAGGCCACTAGGACTA+AGG | - | chr7_4:50139646-50139665 | Msa1160280:intron | 65.0% | |
| CGTAGGACCTGCAGGGGGTT+TGG | - | chr7_4:50139725-50139744 | Msa1160280:intron | 65.0% | |
| ACTCTCCGGCCCAACGGCTC+TGG | + | chr7_4:50137614-50137633 | None:intergenic | 70.0% | |
| TGAGGGTCCGTACACCGGCG+TGG | - | chr7_4:50137654-50137673 | Msa1160280:CDS | 70.0% | |
| CCATCCGCCACGCCGGTGTA+CGG | + | chr7_4:50137664-50137683 | None:intergenic | 70.0% | |
| !! | ACACCGGCGTGGCGGATGGT+CGG | - | chr7_4:50137665-50137684 | Msa1160280:CDS | 70.0% |
| TGGGTGGCCAAACCCCCTGC+AGG | + | chr7_4:50139735-50139754 | None:intergenic | 70.0% | |
| GGGTCCGTACACCGGCGTGG+CGG | - | chr7_4:50137657-50137676 | Msa1160280:CDS | 75.0% | |
| ! | CCGTACACCGGCGTGGCGGA+TGG | - | chr7_4:50137661-50137680 | Msa1160280:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 50137472 | 50141470 | 50137472 | ID=Msa1160280;Name=Msa1160280 |
| chr7_4 | mRNA | 50137472 | 50141470 | 50137472 | ID=Msa1160280-mRNA-1;Parent=Msa1160280;Name=Msa1160280-mRNA-1;_AED=0.04;_eAED=0.04;_QI=12|1|1|1|1|1|3|181|325 |
| chr7_4 | exon | 50137472 | 50138100 | 50137472 | ID=Msa1160280-mRNA-1:exon:13902;Parent=Msa1160280-mRNA-1 |
| chr7_4 | exon | 50139077 | 50139340 | 50139077 | ID=Msa1160280-mRNA-1:exon:13901;Parent=Msa1160280-mRNA-1 |
| chr7_4 | exon | 50141193 | 50141470 | 50141193 | ID=Msa1160280-mRNA-1:exon:13900;Parent=Msa1160280-mRNA-1 |
| chr7_4 | five_prime_UTR | 50141459 | 50141470 | 50141459 | ID=Msa1160280-mRNA-1:five_prime_utr;Parent=Msa1160280-mRNA-1 |
| chr7_4 | CDS | 50141193 | 50141458 | 50141193 | ID=Msa1160280-mRNA-1:cds;Parent=Msa1160280-mRNA-1 |
| chr7_4 | CDS | 50139077 | 50139340 | 50139077 | ID=Msa1160280-mRNA-1:cds;Parent=Msa1160280-mRNA-1 |
| chr7_4 | CDS | 50137653 | 50138100 | 50137653 | ID=Msa1160280-mRNA-1:cds;Parent=Msa1160280-mRNA-1 |
| chr7_4 | three_prime_UTR | 50137472 | 50137652 | 50137472 | ID=Msa1160280-mRNA-1:three_prime_utr;Parent=Msa1160280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
