Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627410 | PNY14955.1 | 91.954 | 87 | 7 | 0 | 3 | 89 | 41 | 127 | 2.29e-48 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627410 | sp|Q9SFU0|SC24A_ARATH | 76.471 | 85 | 20 | 0 | 3 | 87 | 604 | 688 | 6.96e-41 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078590 | Msa0627410 | 0.810168 | 1.318047e-50 | -8.615850e-47 |
| Msa0627410 | Msa0636170 | 0.802809 | 4.703373e-49 | -8.615850e-47 |
| Msa0627410 | Msa0639460 | 0.800737 | 1.252517e-48 | -8.615850e-47 |
| Msa0627410 | Msa0657970 | 0.826856 | 2.156094e-54 | -8.615850e-47 |
| Msa0627410 | Msa0661870 | 0.830321 | 3.137007e-55 | -8.615850e-47 |
| Msa0627410 | Msa0678930 | 0.812307 | 4.527714e-51 | -8.615850e-47 |
| Msa0627410 | Msa0682360 | 0.816234 | 6.143332e-52 | -8.615850e-47 |
| Msa0627410 | Msa0691880 | 0.850849 | 1.300908e-60 | -8.615850e-47 |
| Msa0627410 | Msa0722510 | 0.803091 | 4.113610e-49 | -8.615850e-47 |
| Msa0627410 | Msa0726140 | 0.806406 | 8.355377e-50 | -8.615850e-47 |
| Msa0627410 | Msa0741570 | 0.839691 | 1.361716e-57 | -8.615850e-47 |
| Msa0627410 | Msa0745060 | 0.810347 | 1.206059e-50 | -8.615850e-47 |
| Msa0627410 | Msa0762360 | 0.808522 | 2.971920e-50 | -8.615850e-47 |
| Msa0627410 | Msa0766630 | 0.804183 | 2.441397e-49 | -8.615850e-47 |
| Msa0627410 | Msa0793640 | 0.805588 | 1.241480e-49 | -8.615850e-47 |
| Msa0627410 | Msa0815320 | 0.811262 | 7.642927e-51 | -8.615850e-47 |
| Msa0627410 | Msa0822650 | 0.822984 | 1.768075e-53 | -8.615850e-47 |
| Msa0627410 | Msa0825860 | 0.806069 | 9.838057e-50 | -8.615850e-47 |
| Msa0627410 | Msa0831970 | 0.803307 | 3.711496e-49 | -8.615850e-47 |
| Msa0627410 | Msa0840740 | 0.803956 | 2.721062e-49 | -8.615850e-47 |
| Msa0627410 | Msa0885270 | 0.801030 | 1.091254e-48 | -8.615850e-47 |
| Msa0627410 | Msa0885280 | 0.866071 | 3.726492e-65 | -8.615850e-47 |
| Msa0627410 | Msa0885290 | 0.862118 | 6.353555e-64 | -8.615850e-47 |
| Msa0627410 | Msa0887990 | 0.866383 | 2.967594e-65 | -8.615850e-47 |
| Msa0627410 | Msa0897880 | 0.809054 | 2.287461e-50 | -8.615850e-47 |
| Msa0627410 | Msa0907070 | 0.803451 | 3.464319e-49 | -8.615850e-47 |
| Msa0627410 | Msa0909120 | 0.833048 | 6.670031e-56 | -8.615850e-47 |
| Msa0627410 | Msa0909140 | 0.800540 | 1.373779e-48 | -8.615850e-47 |
| Msa0627410 | Msa0912500 | 0.808184 | 3.508846e-50 | -8.615850e-47 |
| Msa0627410 | Msa0922720 | 0.816924 | 4.302064e-52 | -8.615850e-47 |
| Msa0627410 | Msa0954910 | 0.817003 | 4.131604e-52 | -8.615850e-47 |
| Msa0627410 | Msa0965750 | 0.851779 | 7.104294e-61 | -8.615850e-47 |
| Msa0627410 | Msa1006250 | 0.815676 | 8.182534e-52 | -8.615850e-47 |
| Msa0627410 | Msa1024240 | 0.820602 | 6.288800e-53 | -8.615850e-47 |
| Msa0627410 | Msa1077870 | 0.809859 | 1.536440e-50 | -8.615850e-47 |
| Msa0627410 | Msa1079180 | 0.811538 | 6.658874e-51 | -8.615850e-47 |
| Msa0627410 | Msa1082500 | 0.807016 | 6.210932e-50 | -8.615850e-47 |
| Msa0627410 | Msa1084240 | 0.801800 | 7.588304e-49 | -8.615850e-47 |
| Msa0627410 | Msa1100320 | 0.804738 | 1.870408e-49 | -8.615850e-47 |
| Msa0627410 | Msa1100980 | 0.815275 | 1.004767e-51 | -8.615850e-47 |
| Msa0627410 | Msa1135740 | 0.807038 | 6.142624e-50 | -8.615850e-47 |
| Msa0627410 | Msa1136090 | 0.845245 | 4.580394e-59 | -8.615850e-47 |
| Msa0627410 | Msa1148020 | 0.828659 | 7.950317e-55 | -8.615850e-47 |
| Msa0627410 | Msa1160670 | 0.840112 | 1.057749e-57 | -8.615850e-47 |
| Msa0627410 | Msa1173920 | 0.806657 | 7.394485e-50 | -8.615850e-47 |
| Msa0627410 | Msa1178720 | 0.924499 | 6.497020e-90 | -8.615850e-47 |
| Msa0627410 | Msa1182730 | 0.803534 | 3.329197e-49 | -8.615850e-47 |
| Msa0627410 | Msa1187940 | 0.845859 | 3.122990e-59 | -8.615850e-47 |
| Msa0627410 | Msa1187950 | 0.810748 | 9.879072e-51 | -8.615850e-47 |
| Msa0627410 | Msa1260100 | 0.809999 | 1.433236e-50 | -8.615850e-47 |
| Msa0627410 | Msa1270270 | 0.806777 | 6.975360e-50 | -8.615850e-47 |
| Msa0627410 | Msa1283860 | 0.808744 | 2.664052e-50 | -8.615850e-47 |
| Msa0627410 | Msa1288000 | 0.821929 | 3.109004e-53 | -8.615850e-47 |
| Msa0627410 | Msa1297210 | 0.853507 | 2.283319e-61 | -8.615850e-47 |
| Msa0627410 | Msa1307980 | 0.803928 | 2.757866e-49 | -8.615850e-47 |
| Msa0627410 | Msa1324780 | 0.833835 | 4.244816e-56 | -8.615850e-47 |
| Msa0627410 | Msa1347360 | 0.803227 | 3.855032e-49 | -8.615850e-47 |
| Msa0627410 | Msa1397610 | 0.848672 | 5.278267e-60 | -8.615850e-47 |
| Msa0627410 | Msa1397860 | 0.802286 | 6.028396e-49 | -8.615850e-47 |
| Msa0627410 | Msa1411020 | 0.815371 | 9.568558e-52 | -8.615850e-47 |
| Msa0627410 | Msa1420140 | 0.801455 | 8.933635e-49 | -8.615850e-47 |
| Msa0627410 | Msa1420490 | 0.800953 | 1.131678e-48 | -8.615850e-47 |
| Msa0627410 | Msa1423390 | 0.802627 | 5.129740e-49 | -8.615850e-47 |
| Msa0627410 | Msa1423990 | 0.802297 | 5.998423e-49 | -8.615850e-47 |
| Msa0627410 | Msa1424290 | 0.816547 | 5.228878e-52 | -8.615850e-47 |
| Msa0627410 | Msa1434350 | 0.816415 | 5.596294e-52 | -8.615850e-47 |
| Msa0627410 | Msa1438250 | 0.840675 | 7.540028e-58 | -8.615850e-47 |
| Msa0627410 | Msa1439320 | 0.814604 | 1.415611e-51 | -8.615850e-47 |
| Msa0627410 | Msa1440370 | 0.802548 | 5.324414e-49 | -8.615850e-47 |
| Msa0627410 | Msa1440810 | 0.803786 | 2.951927e-49 | -8.615850e-47 |
| Msa0627410 | Msa1453720 | 0.817681 | 2.906249e-52 | -8.615850e-47 |
| Msa0145250 | Msa0627410 | 0.806740 | 7.103769e-50 | -8.615850e-47 |
| Msa0145750 | Msa0627410 | 0.804836 | 1.783824e-49 | -8.615850e-47 |
| Msa0153910 | Msa0627410 | 0.850085 | 2.133168e-60 | -8.615850e-47 |
| Msa0157810 | Msa0627410 | 0.802407 | 5.691938e-49 | -8.615850e-47 |
| Msa0201250 | Msa0627410 | 0.803131 | 4.035388e-49 | -8.615850e-47 |
| Msa0203500 | Msa0627410 | 0.808601 | 2.859006e-50 | -8.615850e-47 |
| Msa0231000 | Msa0627410 | 0.800033 | 1.742104e-48 | -8.615850e-47 |
| Msa0233300 | Msa0627410 | 0.820328 | 7.270671e-53 | -8.615850e-47 |
| Msa0399140 | Msa0627410 | 0.808516 | 2.981251e-50 | -8.615850e-47 |
| Msa0399300 | Msa0627410 | 0.801263 | 9.776236e-49 | -8.615850e-47 |
| Msa0402290 | Msa0627410 | 0.801530 | 8.620041e-49 | -8.615850e-47 |
| Msa0406120 | Msa0627410 | 0.816295 | 5.951744e-52 | -8.615850e-47 |
| Msa0431500 | Msa0627410 | 0.886717 | 2.682354e-72 | -8.615850e-47 |
| Msa0431690 | Msa0627410 | 0.819155 | 1.347350e-52 | -8.615850e-47 |
| Msa0432290 | Msa0627410 | 0.815954 | 7.092579e-52 | -8.615850e-47 |
| Msa0437990 | Msa0627410 | 0.824769 | 6.745323e-54 | -8.615850e-47 |
| Msa0452620 | Msa0627410 | 0.840387 | 8.965769e-58 | -8.615850e-47 |
| Msa0456200 | Msa0627410 | 0.990113 | 4.063297e-181 | -8.615850e-47 |
| Msa0465140 | Msa0627410 | 0.802229 | 6.195495e-49 | -8.615850e-47 |
| Msa0482620 | Msa0627410 | 0.818422 | 1.976451e-52 | -8.615850e-47 |
| Msa0256440 | Msa0627410 | 0.801187 | 1.013298e-48 | -8.615850e-47 |
| Msa0311630 | Msa0627410 | 0.812195 | 4.790406e-51 | -8.615850e-47 |
| Msa0324150 | Msa0627410 | 0.809805 | 1.577631e-50 | -8.615850e-47 |
| Msa0326200 | Msa0627410 | 0.971429 | 3.775305e-133 | -8.615850e-47 |
| Msa0353190 | Msa0627410 | 0.974276 | 7.162556e-138 | -8.615850e-47 |
| Msa0353690 | Msa0627410 | 0.949624 | 8.733706e-108 | -8.615850e-47 |
| Msa0360900 | Msa0627410 | 0.878768 | 2.149495e-69 | -8.615850e-47 |
| Msa0483650 | Msa0627410 | 0.806253 | 8.997716e-50 | -8.615850e-47 |
| Msa0484780 | Msa0627410 | 0.801351 | 9.381630e-49 | -8.615850e-47 |
| Msa0512900 | Msa0627410 | 0.816670 | 4.906034e-52 | -8.615850e-47 |
| Msa0533430 | Msa0627410 | 0.830869 | 2.303439e-55 | -8.615850e-47 |
| Msa0546710 | Msa0627410 | 0.808282 | 3.343799e-50 | -8.615850e-47 |
| Msa0548060 | Msa0627410 | 0.808672 | 2.760030e-50 | -8.615850e-47 |
| Msa0558640 | Msa0627410 | 0.803555 | 3.295846e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627410 | MtrunA17_Chr7g0271481 | 92.941 | 85 | 6 | 0 | 3 | 87 | 586 | 670 | 2.93e-51 | 172 |
| Msa0627410 | MtrunA17_Chr1g0210851 | 36.585 | 82 | 52 | 0 | 6 | 87 | 686 | 767 | 1.26e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627410 | AT3G07100.1 | 76.471 | 85 | 20 | 0 | 3 | 87 | 604 | 688 | 7.08e-42 | 145 |
| Msa0627410 | AT4G32640.2 | 34.146 | 82 | 54 | 0 | 6 | 87 | 669 | 750 | 1.35e-11 | 59.7 |
| Msa0627410 | AT4G32640.1 | 34.146 | 82 | 54 | 0 | 6 | 87 | 669 | 750 | 1.35e-11 | 59.7 |
| Msa0627410 | AT3G44340.5 | 35.366 | 82 | 53 | 0 | 6 | 87 | 672 | 753 | 1.39e-11 | 59.7 |
| Msa0627410 | AT3G44340.2 | 35.366 | 82 | 53 | 0 | 6 | 87 | 672 | 753 | 1.39e-11 | 59.7 |
| Msa0627410 | AT3G44340.1 | 35.366 | 82 | 53 | 0 | 6 | 87 | 672 | 753 | 1.39e-11 | 59.7 |
| Msa0627410 | AT3G44340.4 | 35.366 | 82 | 53 | 0 | 6 | 87 | 672 | 753 | 1.39e-11 | 59.7 |
| Msa0627410 | AT3G44340.3 | 35.366 | 82 | 53 | 0 | 6 | 87 | 672 | 753 | 1.39e-11 | 59.7 |
Find 18 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCATAAAATGGATCTTC+AGG | 0.293277 | 4_3:+7550828 | None:intergenic |
| AGAAATTGAGTCATGAATTA+AGG | 0.308061 | 4_3:-7550262 | Msa0627410:CDS |
| CATACACATTTACTGAGATT+TGG | 0.310882 | 4_3:+7550781 | None:intergenic |
| GCAGCCATCTGCTCATAAAA+TGG | 0.311495 | 4_3:+7550819 | None:intergenic |
| TCCTGTCTGTGTAGGAACTC+TGG | 0.429146 | 4_3:-7550345 | Msa0627410:intron |
| TCTCCCCATGAGTAGCTGAT+TGG | 0.442822 | 4_3:+7550282 | None:intergenic |
| TGAGTAGCTGATTGGAAAGC+TGG | 0.469035 | 4_3:+7550290 | None:intergenic |
| GAGAGACTGCATGGGAAGCA+TGG | 0.524555 | 4_3:-7550226 | Msa0627410:CDS |
| GCTTTCCAATCAGCTACTCA+TGG | 0.528786 | 4_3:-7550287 | Msa0627410:CDS |
| TACACTGACATAGCCTCCTT+AGG | 0.536987 | 4_3:-7550744 | Msa0627410:intron |
| CTTTCCAATCAGCTACTCAT+GGG | 0.542155 | 4_3:-7550286 | Msa0627410:CDS |
| GGAAAATAAAACACCTAAGG+AGG | 0.554451 | 4_3:+7550731 | None:intergenic |
| ACCTCACAAGAGAGACTGCA+TGG | 0.560035 | 4_3:-7550235 | Msa0627410:CDS |
| ACTCTGGCAAAGTACACTGC+TGG | 0.591069 | 4_3:-7550329 | Msa0627410:CDS |
| CCCATGCAGTCTCTCTTGTG+AGG | 0.598716 | 4_3:+7550234 | None:intergenic |
| TTTGGGACAGATAAAGAACA+TGG | 0.635621 | 4_3:-7550861 | Msa0627410:intron |
| TTTCCAATCAGCTACTCATG+GGG | 0.686768 | 4_3:-7550285 | Msa0627410:CDS |
| CCTCACAAGAGAGACTGCAT+GGG | 0.693489 | 4_3:-7550234 | Msa0627410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTAATTCAACAATTATTT+TGG | + | chr4_3:7550695-7550714 | None:intergenic | 15.0% |
| !!! | ATGAAGAAATTAATCATTTT+AGG | - | chr4_3:7550722-7550741 | Msa0627410:intron | 15.0% |
| !!! | TGAAGAAATTAATCATTTTA+GGG | - | chr4_3:7550723-7550742 | Msa0627410:intron | 15.0% |
| !!! | TTCTAATTCAACAATTATTT+TGG | + | chr4_3:7550695-7550714 | None:intergenic | 15.0% |
| !!! | ATGAAGAAATTAATCATTTT+AGG | - | chr4_3:7550722-7550741 | Msa0627410:intron | 15.0% |
| !!! | TGAAGAAATTAATCATTTTA+GGG | - | chr4_3:7550723-7550742 | Msa0627410:intron | 15.0% |
| !!! | TACATGAATCTTTTTTCTTT+AGG | + | chr4_3:7550277-7550296 | None:intergenic | 20.0% |
| !! | TTTATCTCAAATCTTGTATT+TGG | - | chr4_3:7550618-7550637 | Msa0627410:intron | 20.0% |
| !!! | CAAATCTTTTCATTAAGAAT+TGG | + | chr4_3:7551115-7551134 | None:intergenic | 20.0% |
| !! | ATTCTTAATGAAAAGATTTG+TGG | - | chr4_3:7551115-7551134 | Msa0627410:intron | 20.0% |
| !! | TTAAAGTAATTAGAAATCCA+TGG | - | chr4_3:7551235-7551254 | Msa0627410:intron | 20.0% |
| !!! | ATATTTTTGTTGTATTAGTG+TGG | - | chr4_3:7551403-7551422 | Msa0627410:intron | 20.0% |
| !! | TAACAGGTTTAAAAATAGAA+TGG | + | chr4_3:7551793-7551812 | None:intergenic | 20.0% |
| !!! | TACATGAATCTTTTTTCTTT+AGG | + | chr4_3:7550277-7550296 | None:intergenic | 20.0% |
| !! | TTTATCTCAAATCTTGTATT+TGG | - | chr4_3:7550618-7550637 | Msa0627410:intron | 20.0% |
| !!! | CAAATCTTTTCATTAAGAAT+TGG | + | chr4_3:7551115-7551134 | None:intergenic | 20.0% |
| !! | ATTCTTAATGAAAAGATTTG+TGG | - | chr4_3:7551115-7551134 | Msa0627410:intron | 20.0% |
| !! | TTAAAGTAATTAGAAATCCA+TGG | - | chr4_3:7551235-7551254 | Msa0627410:intron | 20.0% |
| !!! | ATATTTTTGTTGTATTAGTG+TGG | - | chr4_3:7551403-7551422 | Msa0627410:intron | 20.0% |
| !! | TAACAGGTTTAAAAATAGAA+TGG | + | chr4_3:7551793-7551812 | None:intergenic | 20.0% |
| ! | ATTATTAGTATGCATGAGAA+AGG | - | chr4_3:7550221-7550240 | Msa0627410:CDS | 25.0% |
| !!! | TACTGATTTAGTGAGAATTT+TGG | - | chr4_3:7550751-7550770 | Msa0627410:CDS | 25.0% |
| !!! | ACTGATTTAGTGAGAATTTT+GGG | - | chr4_3:7550752-7550771 | Msa0627410:CDS | 25.0% |
| ! | ATTTGTCAGTAATTGCAAAT+GGG | - | chr4_3:7550908-7550927 | Msa0627410:intron | 25.0% |
| !!! | AAGTTAAGTCATGTTTTAGT+TGG | - | chr4_3:7550956-7550975 | Msa0627410:intron | 25.0% |
| !!! | GAAATTTTGGAAAAAATGTG+TGG | - | chr4_3:7551168-7551187 | Msa0627410:intron | 25.0% |
| ! | TTGACTTTAATAAGATGCTT+TGG | - | chr4_3:7551298-7551317 | Msa0627410:intron | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | - | chr4_3:7551380-7551399 | Msa0627410:intron | 25.0% |
| ! | AAAATTCATATGCAATGGTA+AGG | + | chr4_3:7551453-7551472 | None:intergenic | 25.0% |
| ! | GTGATAAAATTCATATGCAA+TGG | + | chr4_3:7551458-7551477 | None:intergenic | 25.0% |
| ! | ATGTTCTGATATTTGTGTAA+TGG | - | chr4_3:7551504-7551523 | Msa0627410:intron | 25.0% |
| ! | AAGTTCAACACACAAAAATA+TGG | + | chr4_3:7551572-7551591 | None:intergenic | 25.0% |
| !!! | AGTGTATTAGTGTATTGATT+TGG | - | chr4_3:7551594-7551613 | Msa0627410:intron | 25.0% |
| !!! | GTGTATTAGTGTATTGATTT+GGG | - | chr4_3:7551595-7551614 | Msa0627410:intron | 25.0% |
| ! | ACGAAATACATAGAAATTGA+AGG | + | chr4_3:7551766-7551785 | None:intergenic | 25.0% |
| ! | ATCAATTAATCAAGAGTAAC+AGG | + | chr4_3:7551809-7551828 | None:intergenic | 25.0% |
| ! | AGAAATTGAGTCATGAATTA+AGG | - | chr4_3:7552211-7552230 | Msa0627410:intron | 25.0% |
| ! | ATTATTAGTATGCATGAGAA+AGG | - | chr4_3:7550221-7550240 | Msa0627410:CDS | 25.0% |
| !!! | TACTGATTTAGTGAGAATTT+TGG | - | chr4_3:7550751-7550770 | Msa0627410:CDS | 25.0% |
| !!! | ACTGATTTAGTGAGAATTTT+GGG | - | chr4_3:7550752-7550771 | Msa0627410:CDS | 25.0% |
| ! | ATTTGTCAGTAATTGCAAAT+GGG | - | chr4_3:7550908-7550927 | Msa0627410:intron | 25.0% |
| !!! | AAGTTAAGTCATGTTTTAGT+TGG | - | chr4_3:7550956-7550975 | Msa0627410:intron | 25.0% |
| !!! | GAAATTTTGGAAAAAATGTG+TGG | - | chr4_3:7551168-7551187 | Msa0627410:intron | 25.0% |
| ! | TTGACTTTAATAAGATGCTT+TGG | - | chr4_3:7551298-7551317 | Msa0627410:intron | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | - | chr4_3:7551380-7551399 | Msa0627410:intron | 25.0% |
| ! | AAAATTCATATGCAATGGTA+AGG | + | chr4_3:7551453-7551472 | None:intergenic | 25.0% |
| ! | GTGATAAAATTCATATGCAA+TGG | + | chr4_3:7551458-7551477 | None:intergenic | 25.0% |
| ! | ATGTTCTGATATTTGTGTAA+TGG | - | chr4_3:7551504-7551523 | Msa0627410:intron | 25.0% |
| ! | AAGTTCAACACACAAAAATA+TGG | + | chr4_3:7551572-7551591 | None:intergenic | 25.0% |
| !!! | AGTGTATTAGTGTATTGATT+TGG | - | chr4_3:7551594-7551613 | Msa0627410:intron | 25.0% |
| !!! | GTGTATTAGTGTATTGATTT+GGG | - | chr4_3:7551595-7551614 | Msa0627410:intron | 25.0% |
| ! | ACGAAATACATAGAAATTGA+AGG | + | chr4_3:7551766-7551785 | None:intergenic | 25.0% |
| ! | ATCAATTAATCAAGAGTAAC+AGG | + | chr4_3:7551809-7551828 | None:intergenic | 25.0% |
| ! | AGAAATTGAGTCATGAATTA+AGG | - | chr4_3:7552211-7552230 | Msa0627410:intron | 25.0% |
| ! | TTTGGTAGTTTCATGCAATA+AGG | - | chr4_3:7550348-7550367 | Msa0627410:intron | 30.0% |
| ! | TTGGTAGTTTCATGCAATAA+GGG | - | chr4_3:7550349-7550368 | Msa0627410:intron | 30.0% |
| ! | TCAAATCTTGTATTTGGTGA+AGG | - | chr4_3:7550624-7550643 | Msa0627410:intron | 30.0% |
| ! | ACTGTCTAATTGTTGCATTT+TGG | - | chr4_3:7550845-7550864 | Msa0627410:CDS | 30.0% |
| CAACGACATAACATCTTAAT+CGG | + | chr4_3:7550878-7550897 | None:intergenic | 30.0% | |
| GATTTGTCAGTAATTGCAAA+TGG | - | chr4_3:7550907-7550926 | Msa0627410:intron | 30.0% | |
| TTTGTCAGTAATTGCAAATG+GGG | - | chr4_3:7550909-7550928 | Msa0627410:intron | 30.0% | |
| GTCACACTTATGTCAAAAAA+TGG | - | chr4_3:7551137-7551156 | Msa0627410:intron | 30.0% | |
| !! | AATGGACAGTGTTGAAATTT+TGG | - | chr4_3:7551155-7551174 | Msa0627410:intron | 30.0% |
| !! | GATATTTGTGTAATGGATAG+AGG | - | chr4_3:7551511-7551530 | Msa0627410:intron | 30.0% |
| CATACACATTTACTGAGATT+TGG | + | chr4_3:7551695-7551714 | None:intergenic | 30.0% | |
| GAAGGAAAATAAAACACCTA+AGG | + | chr4_3:7551748-7551767 | None:intergenic | 30.0% | |
| ! | ATTTGATGATTCTTCAGTTG+TGG | - | chr4_3:7551831-7551850 | Msa0627410:intron | 30.0% |
| ! | ACTTGATGACATGAGTTTAT+GGG | - | chr4_3:7551869-7551888 | Msa0627410:intron | 30.0% |
| TAAACTGATACTCTAACTCA+TGG | - | chr4_3:7551912-7551931 | Msa0627410:intron | 30.0% | |
| AAATGCTGACAGAATTACAT+CGG | + | chr4_3:7552042-7552061 | None:intergenic | 30.0% | |
| ! | TTTGGTAGTTTCATGCAATA+AGG | - | chr4_3:7550348-7550367 | Msa0627410:intron | 30.0% |
| ! | TTGGTAGTTTCATGCAATAA+GGG | - | chr4_3:7550349-7550368 | Msa0627410:intron | 30.0% |
| ! | TCAAATCTTGTATTTGGTGA+AGG | - | chr4_3:7550624-7550643 | Msa0627410:intron | 30.0% |
| ! | ACTGTCTAATTGTTGCATTT+TGG | - | chr4_3:7550845-7550864 | Msa0627410:CDS | 30.0% |
| CAACGACATAACATCTTAAT+CGG | + | chr4_3:7550878-7550897 | None:intergenic | 30.0% | |
| GATTTGTCAGTAATTGCAAA+TGG | - | chr4_3:7550907-7550926 | Msa0627410:intron | 30.0% | |
| TTTGTCAGTAATTGCAAATG+GGG | - | chr4_3:7550909-7550928 | Msa0627410:intron | 30.0% | |
| GTCACACTTATGTCAAAAAA+TGG | - | chr4_3:7551137-7551156 | Msa0627410:intron | 30.0% | |
| !! | AATGGACAGTGTTGAAATTT+TGG | - | chr4_3:7551155-7551174 | Msa0627410:intron | 30.0% |
| !! | GATATTTGTGTAATGGATAG+AGG | - | chr4_3:7551511-7551530 | Msa0627410:intron | 30.0% |
| CATACACATTTACTGAGATT+TGG | + | chr4_3:7551695-7551714 | None:intergenic | 30.0% | |
| GAAGGAAAATAAAACACCTA+AGG | + | chr4_3:7551748-7551767 | None:intergenic | 30.0% | |
| ! | ATTTGATGATTCTTCAGTTG+TGG | - | chr4_3:7551831-7551850 | Msa0627410:intron | 30.0% |
| ! | ACTTGATGACATGAGTTTAT+GGG | - | chr4_3:7551869-7551888 | Msa0627410:intron | 30.0% |
| TAAACTGATACTCTAACTCA+TGG | - | chr4_3:7551912-7551931 | Msa0627410:intron | 30.0% | |
| AAATGCTGACAGAATTACAT+CGG | + | chr4_3:7552042-7552061 | None:intergenic | 30.0% | |
| ! | ACAAAGGGGTGTATAGAAAA+GGG | + | chr4_3:7550303-7550322 | None:intergenic | 35.0% |
| ! | TACAAAGGGGTGTATAGAAA+AGG | + | chr4_3:7550304-7550323 | None:intergenic | 35.0% |
| TGGTAGTTTCATGCAATAAG+GGG | - | chr4_3:7550350-7550369 | Msa0627410:intron | 35.0% | |
| GAGATAAACATCACCTTCAA+CGG | + | chr4_3:7550606-7550625 | None:intergenic | 35.0% | |
| ! | GATGGGATGATAATTTGTGT+TGG | - | chr4_3:7550931-7550950 | Msa0627410:intron | 35.0% |
| AAGAGAGACTAAATGATTGG+AGG | + | chr4_3:7551058-7551077 | None:intergenic | 35.0% | |
| CCAAAGAGAGACTAAATGAT+TGG | + | chr4_3:7551061-7551080 | None:intergenic | 35.0% | |
| CCAATCATTTAGTCTCTCTT+TGG | - | chr4_3:7551058-7551077 | Msa0627410:intron | 35.0% | |
| GTGGTTACATCTTTGTTACA+TGG | - | chr4_3:7551187-7551206 | Msa0627410:intron | 35.0% | |
| TAACATCACACATTTCACCA+TGG | + | chr4_3:7551255-7551274 | None:intergenic | 35.0% | |
| ! | TTTGGGACAGATAAAGAACA+TGG | - | chr4_3:7551612-7551631 | Msa0627410:intron | 35.0% |
| TGCTCATAAAATGGATCTTC+AGG | + | chr4_3:7551648-7551667 | None:intergenic | 35.0% | |
| ! | AGATCCATTTTATGAGCAGA+TGG | - | chr4_3:7551650-7551669 | Msa0627410:intron | 35.0% |
| GGAAAATAAAACACCTAAGG+AGG | + | chr4_3:7551745-7551764 | None:intergenic | 35.0% | |
| ! | GACTTGATGACATGAGTTTA+TGG | - | chr4_3:7551868-7551887 | Msa0627410:intron | 35.0% |
| GGATCTATTTGACTATGAAC+TGG | - | chr4_3:7551933-7551952 | Msa0627410:intron | 35.0% | |
| AATGCTGACAGAATTACATC+GGG | + | chr4_3:7552041-7552060 | None:intergenic | 35.0% | |
| TGTAATTCTGTCAGCATTTG+CGG | - | chr4_3:7552043-7552062 | Msa0627410:intron | 35.0% | |
| !!! | GTTTTTTTTCCTGTCTGTGT+AGG | - | chr4_3:7552120-7552139 | Msa0627410:intron | 35.0% |
| ! | ACAAAGGGGTGTATAGAAAA+GGG | + | chr4_3:7550303-7550322 | None:intergenic | 35.0% |
| ! | TACAAAGGGGTGTATAGAAA+AGG | + | chr4_3:7550304-7550323 | None:intergenic | 35.0% |
| TGGTAGTTTCATGCAATAAG+GGG | - | chr4_3:7550350-7550369 | Msa0627410:intron | 35.0% | |
| GAGATAAACATCACCTTCAA+CGG | + | chr4_3:7550606-7550625 | None:intergenic | 35.0% | |
| ! | GATGGGATGATAATTTGTGT+TGG | - | chr4_3:7550931-7550950 | Msa0627410:intron | 35.0% |
| AAGAGAGACTAAATGATTGG+AGG | + | chr4_3:7551058-7551077 | None:intergenic | 35.0% | |
| CCAAAGAGAGACTAAATGAT+TGG | + | chr4_3:7551061-7551080 | None:intergenic | 35.0% | |
| CCAATCATTTAGTCTCTCTT+TGG | - | chr4_3:7551058-7551077 | Msa0627410:intron | 35.0% | |
| GTGGTTACATCTTTGTTACA+TGG | - | chr4_3:7551187-7551206 | Msa0627410:intron | 35.0% | |
| TAACATCACACATTTCACCA+TGG | + | chr4_3:7551255-7551274 | None:intergenic | 35.0% | |
| ! | TTTGGGACAGATAAAGAACA+TGG | - | chr4_3:7551612-7551631 | Msa0627410:intron | 35.0% |
| TGCTCATAAAATGGATCTTC+AGG | + | chr4_3:7551648-7551667 | None:intergenic | 35.0% | |
| ! | AGATCCATTTTATGAGCAGA+TGG | - | chr4_3:7551650-7551669 | Msa0627410:intron | 35.0% |
| GGAAAATAAAACACCTAAGG+AGG | + | chr4_3:7551745-7551764 | None:intergenic | 35.0% | |
| ! | GACTTGATGACATGAGTTTA+TGG | - | chr4_3:7551868-7551887 | Msa0627410:intron | 35.0% |
| GGATCTATTTGACTATGAAC+TGG | - | chr4_3:7551933-7551952 | Msa0627410:intron | 35.0% | |
| AATGCTGACAGAATTACATC+GGG | + | chr4_3:7552041-7552060 | None:intergenic | 35.0% | |
| TGTAATTCTGTCAGCATTTG+CGG | - | chr4_3:7552043-7552062 | Msa0627410:intron | 35.0% | |
| !!! | GTTTTTTTTCCTGTCTGTGT+AGG | - | chr4_3:7552120-7552139 | Msa0627410:intron | 35.0% |
| AAAGGTCCACATGTTGTTGT+AGG | - | chr4_3:7550239-7550258 | Msa0627410:CDS | 40.0% | |
| AAGGTCCACATGTTGTTGTA+GGG | - | chr4_3:7550240-7550259 | Msa0627410:CDS | 40.0% | |
| ! | CAAAGGGGTGTATAGAAAAG+GGG | + | chr4_3:7550302-7550321 | None:intergenic | 40.0% |
| TCATGCAATAAGGGGTAGTT+TGG | - | chr4_3:7550358-7550377 | Msa0627410:intron | 40.0% | |
| ! | GATTTGTTCAGAAGAGGAAG+AGG | + | chr4_3:7550413-7550432 | None:intergenic | 40.0% |
| !! | AAGGTCGATTTGTTCAGAAG+AGG | + | chr4_3:7550419-7550438 | None:intergenic | 40.0% |
| !! | AGTTGATGGAGGTGATAGAA+CGG | + | chr4_3:7550486-7550505 | None:intergenic | 40.0% |
| AGGAGTTGTGATTCGATAGT+GGG | + | chr4_3:7550509-7550528 | None:intergenic | 40.0% | |
| AAGGAGTTGTGATTCGATAG+TGG | + | chr4_3:7550510-7550529 | None:intergenic | 40.0% | |
| GAGGAAAACGCAAAAAGAGT+GGG | + | chr4_3:7550562-7550581 | None:intergenic | 40.0% | |
| TCAGTAATTGCAAATGGGGA+TGG | - | chr4_3:7550913-7550932 | Msa0627410:intron | 40.0% | |
| CAGTAATTGCAAATGGGGAT+GGG | - | chr4_3:7550914-7550933 | Msa0627410:intron | 40.0% | |
| !! | TAATGGATAGAGGCATTGAG+TGG | - | chr4_3:7551521-7551540 | Msa0627410:intron | 40.0% |
| CTTTCCAATCAGCTACTCAT+GGG | - | chr4_3:7552187-7552206 | Msa0627410:intron | 40.0% | |
| TTTCCAATCAGCTACTCATG+GGG | - | chr4_3:7552188-7552207 | Msa0627410:intron | 40.0% | |
| AAAGGTCCACATGTTGTTGT+AGG | - | chr4_3:7550239-7550258 | Msa0627410:CDS | 40.0% | |
| AAGGTCCACATGTTGTTGTA+GGG | - | chr4_3:7550240-7550259 | Msa0627410:CDS | 40.0% | |
| ! | CAAAGGGGTGTATAGAAAAG+GGG | + | chr4_3:7550302-7550321 | None:intergenic | 40.0% |
| TCATGCAATAAGGGGTAGTT+TGG | - | chr4_3:7550358-7550377 | Msa0627410:intron | 40.0% | |
| ! | GATTTGTTCAGAAGAGGAAG+AGG | + | chr4_3:7550413-7550432 | None:intergenic | 40.0% |
| !! | AAGGTCGATTTGTTCAGAAG+AGG | + | chr4_3:7550419-7550438 | None:intergenic | 40.0% |
| !! | AGTTGATGGAGGTGATAGAA+CGG | + | chr4_3:7550486-7550505 | None:intergenic | 40.0% |
| AGGAGTTGTGATTCGATAGT+GGG | + | chr4_3:7550509-7550528 | None:intergenic | 40.0% | |
| AAGGAGTTGTGATTCGATAG+TGG | + | chr4_3:7550510-7550529 | None:intergenic | 40.0% | |
| GAGGAAAACGCAAAAAGAGT+GGG | + | chr4_3:7550562-7550581 | None:intergenic | 40.0% | |
| TCAGTAATTGCAAATGGGGA+TGG | - | chr4_3:7550913-7550932 | Msa0627410:intron | 40.0% | |
| CAGTAATTGCAAATGGGGAT+GGG | - | chr4_3:7550914-7550933 | Msa0627410:intron | 40.0% | |
| !! | TAATGGATAGAGGCATTGAG+TGG | - | chr4_3:7551521-7551540 | Msa0627410:intron | 40.0% |
| CTTTCCAATCAGCTACTCAT+GGG | - | chr4_3:7552187-7552206 | Msa0627410:intron | 40.0% | |
| TTTCCAATCAGCTACTCATG+GGG | - | chr4_3:7552188-7552207 | Msa0627410:intron | 40.0% | |
| AGGTCCACATGTTGTTGTAG+GGG | - | chr4_3:7550241-7550260 | Msa0627410:CDS | 45.0% | |
| ACATCAGCAGTGGTACAAAG+GGG | + | chr4_3:7550317-7550336 | None:intergenic | 45.0% | |
| CACATCAGCAGTGGTACAAA+GGG | + | chr4_3:7550318-7550337 | None:intergenic | 45.0% | |
| AGGAAGAGGAGAAGATTGTG+GGG | + | chr4_3:7550399-7550418 | None:intergenic | 45.0% | |
| GAGGAAGAGGAGAAGATTGT+GGG | + | chr4_3:7550400-7550419 | None:intergenic | 45.0% | |
| AGAGGAAGAGGAGAAGATTG+TGG | + | chr4_3:7550401-7550420 | None:intergenic | 45.0% | |
| TCCTCTTCCTCTTCTCTCTT+TGG | - | chr4_3:7550440-7550459 | Msa0627410:intron | 45.0% | |
| !! | GATTCGATAGTGGGAGTTGA+TGG | + | chr4_3:7550500-7550519 | None:intergenic | 45.0% |
| GGAGAGAAAGGTAGTGATGA+AGG | + | chr4_3:7550529-7550548 | None:intergenic | 45.0% | |
| AAAAGAGTGGGAGGAAATGG+CGG | + | chr4_3:7550550-7550569 | None:intergenic | 45.0% | |
| GCAAAAAGAGTGGGAGGAAA+TGG | + | chr4_3:7550553-7550572 | None:intergenic | 45.0% | |
| GAAAACGCAAAAAGAGTGGG+AGG | + | chr4_3:7550559-7550578 | None:intergenic | 45.0% | |
| GGAGGAAAACGCAAAAAGAG+TGG | + | chr4_3:7550563-7550582 | None:intergenic | 45.0% | |
| ! | CTTTTTGCGTTTTCCTCCGA+CGG | - | chr4_3:7550565-7550584 | Msa0627410:intron | 45.0% |
| TTCAACGGAGAGAGAGATAG+CGG | + | chr4_3:7550591-7550610 | None:intergenic | 45.0% | |
| CTCTTTGGTTGTTCCTCTGA+AGG | - | chr4_3:7551073-7551092 | Msa0627410:intron | 45.0% | |
| CTTAATCACTACGCCTTCAG+AGG | + | chr4_3:7551089-7551108 | None:intergenic | 45.0% | |
| TAAGGCTTGTGCTCTGTCTT+GGG | + | chr4_3:7551435-7551454 | None:intergenic | 45.0% | |
| ! | CATTGAGTGGTGGAATTGGT+TGG | - | chr4_3:7551534-7551553 | Msa0627410:intron | 45.0% |
| GCAGCCATCTGCTCATAAAA+TGG | + | chr4_3:7551657-7551676 | None:intergenic | 45.0% | |
| TACACTGACATAGCCTCCTT+AGG | - | chr4_3:7551729-7551748 | Msa0627410:intron | 45.0% | |
| ACAGAATTACATCGGGACAC+GGG | + | chr4_3:7552034-7552053 | None:intergenic | 45.0% | |
| GACAGAATTACATCGGGACA+CGG | + | chr4_3:7552035-7552054 | None:intergenic | 45.0% | |
| CATCAGCACGCAAGACTATA+TGG | + | chr4_3:7552077-7552096 | None:intergenic | 45.0% | |
| TGAGTAGCTGATTGGAAAGC+TGG | + | chr4_3:7552186-7552205 | None:intergenic | 45.0% | |
| GCTTTCCAATCAGCTACTCA+TGG | - | chr4_3:7552186-7552205 | Msa0627410:intron | 45.0% | |
| AGGTCCACATGTTGTTGTAG+GGG | - | chr4_3:7550241-7550260 | Msa0627410:CDS | 45.0% | |
| ACATCAGCAGTGGTACAAAG+GGG | + | chr4_3:7550317-7550336 | None:intergenic | 45.0% | |
| CACATCAGCAGTGGTACAAA+GGG | + | chr4_3:7550318-7550337 | None:intergenic | 45.0% | |
| AGGAAGAGGAGAAGATTGTG+GGG | + | chr4_3:7550399-7550418 | None:intergenic | 45.0% | |
| GAGGAAGAGGAGAAGATTGT+GGG | + | chr4_3:7550400-7550419 | None:intergenic | 45.0% | |
| AGAGGAAGAGGAGAAGATTG+TGG | + | chr4_3:7550401-7550420 | None:intergenic | 45.0% | |
| TCCTCTTCCTCTTCTCTCTT+TGG | - | chr4_3:7550440-7550459 | Msa0627410:intron | 45.0% | |
| !! | GATTCGATAGTGGGAGTTGA+TGG | + | chr4_3:7550500-7550519 | None:intergenic | 45.0% |
| GGAGAGAAAGGTAGTGATGA+AGG | + | chr4_3:7550529-7550548 | None:intergenic | 45.0% | |
| AAAAGAGTGGGAGGAAATGG+CGG | + | chr4_3:7550550-7550569 | None:intergenic | 45.0% | |
| GCAAAAAGAGTGGGAGGAAA+TGG | + | chr4_3:7550553-7550572 | None:intergenic | 45.0% | |
| GAAAACGCAAAAAGAGTGGG+AGG | + | chr4_3:7550559-7550578 | None:intergenic | 45.0% | |
| GGAGGAAAACGCAAAAAGAG+TGG | + | chr4_3:7550563-7550582 | None:intergenic | 45.0% | |
| ! | CTTTTTGCGTTTTCCTCCGA+CGG | - | chr4_3:7550565-7550584 | Msa0627410:intron | 45.0% |
| TTCAACGGAGAGAGAGATAG+CGG | + | chr4_3:7550591-7550610 | None:intergenic | 45.0% | |
| CTCTTTGGTTGTTCCTCTGA+AGG | - | chr4_3:7551073-7551092 | Msa0627410:intron | 45.0% | |
| CTTAATCACTACGCCTTCAG+AGG | + | chr4_3:7551089-7551108 | None:intergenic | 45.0% | |
| TAAGGCTTGTGCTCTGTCTT+GGG | + | chr4_3:7551435-7551454 | None:intergenic | 45.0% | |
| ! | CATTGAGTGGTGGAATTGGT+TGG | - | chr4_3:7551534-7551553 | Msa0627410:intron | 45.0% |
| GCAGCCATCTGCTCATAAAA+TGG | + | chr4_3:7551657-7551676 | None:intergenic | 45.0% | |
| TACACTGACATAGCCTCCTT+AGG | - | chr4_3:7551729-7551748 | Msa0627410:intron | 45.0% | |
| ACAGAATTACATCGGGACAC+GGG | + | chr4_3:7552034-7552053 | None:intergenic | 45.0% | |
| GACAGAATTACATCGGGACA+CGG | + | chr4_3:7552035-7552054 | None:intergenic | 45.0% | |
| CATCAGCACGCAAGACTATA+TGG | + | chr4_3:7552077-7552096 | None:intergenic | 45.0% | |
| TGAGTAGCTGATTGGAAAGC+TGG | + | chr4_3:7552186-7552205 | None:intergenic | 45.0% | |
| GCTTTCCAATCAGCTACTCA+TGG | - | chr4_3:7552186-7552205 | Msa0627410:intron | 45.0% | |
| GTAGCCCCTACAACAACATG+TGG | + | chr4_3:7550248-7550267 | None:intergenic | 50.0% | |
| CCACATCAGCAGTGGTACAA+AGG | + | chr4_3:7550319-7550338 | None:intergenic | 50.0% | |
| CCTTTGTACCACTGCTGATG+TGG | - | chr4_3:7550316-7550335 | Msa0627410:CDS | 50.0% | |
| CTGATGTGGCAGGGGTAATT+TGG | - | chr4_3:7550330-7550349 | Msa0627410:CDS | 50.0% | |
| GAGAGAAGAGGAAGAGGAGA+AGG | + | chr4_3:7550438-7550457 | None:intergenic | 50.0% | |
| GCCAAAGAGAGAAGAGGAAG+AGG | + | chr4_3:7550444-7550463 | None:intergenic | 50.0% | |
| ! | AGGTGATAGAACGGCATCGA+CGG | + | chr4_3:7550477-7550496 | None:intergenic | 50.0% |
| !! | TCGATAGTGGGAGTTGATGG+AGG | + | chr4_3:7550497-7550516 | None:intergenic | 50.0% |
| GCTATCTCTCTCTCCGTTGA+AGG | - | chr4_3:7550590-7550609 | Msa0627410:intron | 50.0% | |
| GTAAGGCTTGTGCTCTGTCT+TGG | + | chr4_3:7551436-7551455 | None:intergenic | 50.0% | |
| !! | TGGATAGAGGCATTGAGTGG+TGG | - | chr4_3:7551524-7551543 | Msa0627410:intron | 50.0% |
| !! | GAGGCATTGAGTGGTGGAAT+TGG | - | chr4_3:7551530-7551549 | Msa0627410:intron | 50.0% |
| CAGAATTACATCGGGACACG+GGG | + | chr4_3:7552033-7552052 | None:intergenic | 50.0% | |
| TCCTGTCTGTGTAGGAACTC+TGG | - | chr4_3:7552128-7552147 | Msa0627410:intron | 50.0% | |
| ACTCTGGCAAAGTACACTGC+TGG | - | chr4_3:7552144-7552163 | Msa0627410:intron | 50.0% | |
| TCTCCCCATGAGTAGCTGAT+TGG | + | chr4_3:7552194-7552213 | None:intergenic | 50.0% | |
| ACCTCACAAGAGAGACTGCA+TGG | - | chr4_3:7552238-7552257 | Msa0627410:intron | 50.0% | |
| CCTCACAAGAGAGACTGCAT+GGG | - | chr4_3:7552239-7552258 | Msa0627410:intron | 50.0% | |
| GTAGCCCCTACAACAACATG+TGG | + | chr4_3:7550248-7550267 | None:intergenic | 50.0% | |
| CCACATCAGCAGTGGTACAA+AGG | + | chr4_3:7550319-7550338 | None:intergenic | 50.0% | |
| CCTTTGTACCACTGCTGATG+TGG | - | chr4_3:7550316-7550335 | Msa0627410:CDS | 50.0% | |
| CTGATGTGGCAGGGGTAATT+TGG | - | chr4_3:7550330-7550349 | Msa0627410:CDS | 50.0% | |
| GAGAGAAGAGGAAGAGGAGA+AGG | + | chr4_3:7550438-7550457 | None:intergenic | 50.0% | |
| GCCAAAGAGAGAAGAGGAAG+AGG | + | chr4_3:7550444-7550463 | None:intergenic | 50.0% | |
| ! | AGGTGATAGAACGGCATCGA+CGG | + | chr4_3:7550477-7550496 | None:intergenic | 50.0% |
| !! | TCGATAGTGGGAGTTGATGG+AGG | + | chr4_3:7550497-7550516 | None:intergenic | 50.0% |
| GCTATCTCTCTCTCCGTTGA+AGG | - | chr4_3:7550590-7550609 | Msa0627410:intron | 50.0% | |
| GTAAGGCTTGTGCTCTGTCT+TGG | + | chr4_3:7551436-7551455 | None:intergenic | 50.0% | |
| !! | TGGATAGAGGCATTGAGTGG+TGG | - | chr4_3:7551524-7551543 | Msa0627410:intron | 50.0% |
| !! | GAGGCATTGAGTGGTGGAAT+TGG | - | chr4_3:7551530-7551549 | Msa0627410:intron | 50.0% |
| CAGAATTACATCGGGACACG+GGG | + | chr4_3:7552033-7552052 | None:intergenic | 50.0% | |
| TCCTGTCTGTGTAGGAACTC+TGG | - | chr4_3:7552128-7552147 | Msa0627410:intron | 50.0% | |
| ACTCTGGCAAAGTACACTGC+TGG | - | chr4_3:7552144-7552163 | Msa0627410:intron | 50.0% | |
| TCTCCCCATGAGTAGCTGAT+TGG | + | chr4_3:7552194-7552213 | None:intergenic | 50.0% | |
| ACCTCACAAGAGAGACTGCA+TGG | - | chr4_3:7552238-7552257 | Msa0627410:intron | 50.0% | |
| CCTCACAAGAGAGACTGCAT+GGG | - | chr4_3:7552239-7552258 | Msa0627410:intron | 50.0% | |
| TGTACCACTGCTGATGTGGC+AGG | - | chr4_3:7550320-7550339 | Msa0627410:CDS | 55.0% | |
| GTACCACTGCTGATGTGGCA+GGG | - | chr4_3:7550321-7550340 | Msa0627410:CDS | 55.0% | |
| TACCACTGCTGATGTGGCAG+GGG | - | chr4_3:7550322-7550341 | Msa0627410:CDS | 55.0% | |
| GGTGAGGCCAAAGAGAGAAG+AGG | + | chr4_3:7550450-7550469 | None:intergenic | 55.0% | |
| ! | GGAGGAAATGGCGGAGAGAA+AGG | + | chr4_3:7550541-7550560 | None:intergenic | 55.0% |
| GCCAGAGTTCCTACACAGAC+AGG | + | chr4_3:7552132-7552151 | None:intergenic | 55.0% | |
| CCCATGCAGTCTCTCTTGTG+AGG | + | chr4_3:7552242-7552261 | None:intergenic | 55.0% | |
| GAGAGACTGCATGGGAAGCA+TGG | - | chr4_3:7552247-7552266 | Msa0627410:intron | 55.0% | |
| TGTACCACTGCTGATGTGGC+AGG | - | chr4_3:7550320-7550339 | Msa0627410:CDS | 55.0% | |
| GTACCACTGCTGATGTGGCA+GGG | - | chr4_3:7550321-7550340 | Msa0627410:CDS | 55.0% | |
| TACCACTGCTGATGTGGCAG+GGG | - | chr4_3:7550322-7550341 | Msa0627410:CDS | 55.0% | |
| GGTGAGGCCAAAGAGAGAAG+AGG | + | chr4_3:7550450-7550469 | None:intergenic | 55.0% | |
| ! | GGAGGAAATGGCGGAGAGAA+AGG | + | chr4_3:7550541-7550560 | None:intergenic | 55.0% |
| GCCAGAGTTCCTACACAGAC+AGG | + | chr4_3:7552132-7552151 | None:intergenic | 55.0% | |
| CCCATGCAGTCTCTCTTGTG+AGG | + | chr4_3:7552242-7552261 | None:intergenic | 55.0% | |
| GAGAGACTGCATGGGAAGCA+TGG | - | chr4_3:7552247-7552266 | Msa0627410:intron | 55.0% | |
| TACCCCTGCCACATCAGCAG+TGG | + | chr4_3:7550327-7550346 | None:intergenic | 60.0% | |
| !! | TAGAACGGCATCGACGGCGA+CGG | + | chr4_3:7550471-7550490 | None:intergenic | 60.0% |
| ! | GAGAGAGAGATAGCGGCCGT+CGG | + | chr4_3:7550584-7550603 | None:intergenic | 60.0% |
| TACCCCTGCCACATCAGCAG+TGG | + | chr4_3:7550327-7550346 | None:intergenic | 60.0% | |
| !! | TAGAACGGCATCGACGGCGA+CGG | + | chr4_3:7550471-7550490 | None:intergenic | 60.0% |
| ! | GAGAGAGAGATAGCGGCCGT+CGG | + | chr4_3:7550584-7550603 | None:intergenic | 60.0% |
| ! | AGAGAGATAGCGGCCGTCGG+AGG | + | chr4_3:7550581-7550600 | None:intergenic | 65.0% |
| ! | AGAGAGATAGCGGCCGTCGG+AGG | + | chr4_3:7550581-7550600 | None:intergenic | 65.0% |
| !! | CGGCATCGACGGCGACGGTG+AGG | + | chr4_3:7550466-7550485 | None:intergenic | 75.0% |
| !! | CGGCATCGACGGCGACGGTG+AGG | + | chr4_3:7550466-7550485 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 7550193 | 7552302 | 7550193 | ID=Msa0627410;Name=Msa0627410 |
| chr4_3 | mRNA | 7550193 | 7552302 | 7550193 | ID=Msa0627410-mRNA-1;Parent=Msa0627410;Name=Msa0627410-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.66|0.5|0.66|3|0|98 |
| chr4_3 | exon | 7552296 | 7552302 | 7552296 | ID=Msa0627410-mRNA-1:exon:2242;Parent=Msa0627410-mRNA-1 |
| chr4_3 | exon | 7550745 | 7550873 | 7550745 | ID=Msa0627410-mRNA-1:exon:2241;Parent=Msa0627410-mRNA-1 |
| chr4_3 | exon | 7550193 | 7550353 | 7550193 | ID=Msa0627410-mRNA-1:exon:2240;Parent=Msa0627410-mRNA-1 |
| chr4_3 | CDS | 7552296 | 7552302 | 7552296 | ID=Msa0627410-mRNA-1:cds;Parent=Msa0627410-mRNA-1 |
| chr4_3 | CDS | 7550745 | 7550873 | 7550745 | ID=Msa0627410-mRNA-1:cds;Parent=Msa0627410-mRNA-1 |
| chr4_3 | CDS | 7550193 | 7550353 | 7550193 | ID=Msa0627410-mRNA-1:cds;Parent=Msa0627410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
