AlfalfaGEDB | Msa0171930

M. sativa cultivar zhongmu-4 / Msa0171930

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF17177.7

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0171930	XP_013468936.2	96.861	892	20	2	1	892	1	884	0.0	1781

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0171930	A0A396K1Y8	96.861	892	20	2	1	892	1	884	0.0	1781

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0171930	0.846737	1.800095e-59	-8.615850e-47
Msa0001460	Msa0171930	0.882814	7.597305e-71	-8.615850e-47
Msa0001540	Msa0171930	0.830135	3.483373e-55	-8.615850e-47
Msa0001950	Msa0171930	0.837004	6.713620e-57	-8.615850e-47
Msa0003470	Msa0171930	0.809396	1.932065e-50	-8.615850e-47
Msa0004350	Msa0171930	0.825402	4.780861e-54	-8.615850e-47
Msa0010460	Msa0171930	-0.804471	2.126656e-49	-8.615850e-47
Msa0012460	Msa0171930	0.842471	2.533813e-58	-8.615850e-47
Msa0015370	Msa0171930	0.808650	2.789892e-50	-8.615850e-47
Msa0017120	Msa0171930	0.846422	2.193815e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0171930	MtrunA17_Chr1g0189881	96.861	892	20	2	1	892	1	884	0.0	1781
Msa0171930	MtrunA17_Chr1g0170071	23.003	313	211	8	95	402	446	733	2.13e-13	74.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0171930	AT3G04260.1	69.627	912	217	10	15	886	9	900	0.0	1244
Msa0171930	AT1G18900.4	20.664	271	205	4	59	327	366	628	2.05e-11	68.6
Msa0171930	AT1G18900.2	20.664	271	205	4	59	327	366	628	2.05e-11	68.6
Msa0171930	AT1G18900.1	20.664	271	205	4	59	327	366	628	2.05e-11	68.6
Msa0171930	AT1G18900.3	20.664	271	205	4	59	327	366	628	2.35e-11	68.2
Msa0171930	AT4G20090.2	21.555	283	186	4	68	316	268	548	3.90e-11	67.4
Msa0171930	AT4G20090.1	21.555	283	186	4	68	316	268	548	3.90e-11	67.4
Msa0171930	AT3G06920.2	21.672	323	230	5	59	377	114	417	4.12e-11	67.4
Msa0171930	AT3G06920.3	21.672	323	230	5	59	377	114	417	4.12e-11	67.4
Msa0171930	AT3G06920.1	21.672	323	230	5	59	377	100	403	4.31e-11	67.4

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Find 274 sgRNAs with CRISPR-Local

Find 619 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTAGTACCGCATGA+AGG	0.659287	1_4:+56778948	None:intergenic
AAACGGTGGGTGCCCCGAAG+TGG	0.606401	1_4:-56781828	Msa0171930:CDS
AAACGTCGCTTCTTAGGAGA+AGG	0.535168	1_4:-56781230	Msa0171930:CDS
AAACTTCATCAGTAGCCCGG+AGG	0.754800	1_4:+56786247	None:intergenic
AACAGATATGTTGAAGAAGG+TGG	0.621152	1_4:-56781867	Msa0171930:intron
AACCGCTTAACTCCTCGAAC+CGG	0.523138	1_4:-56787588	Msa0171930:CDS
AACGCCTCAAATATGTCCAA+AGG	0.589906	1_4:+56780631	None:intergenic
AACTAACCTGTCATAAGAGT+CGG	0.597204	1_4:+56785148	None:intergenic
AAGAAGATCAAGACGGAATA+TGG	0.330554	1_4:-56780913	Msa0171930:CDS
AAGAGCTCATGAACCGGGCT+AGG	0.488986	1_4:-56787458	Msa0171930:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATGTTACAGTTACAGTTA+CGG	-	chr1_4:56778762-56778781	Msa0171930:three_prime_UTR	30.0%
ATACATAACTTGAGAAACTC+CGG	+	chr1_4:56778979-56778998	None:intergenic	30.0%
AGTGAATTTAAACATTACCG+CGG	+	chr1_4:56779087-56779106	None:intergenic	30.0%
CGTAAATACTTGAGACTATT+TGG	-	chr1_4:56779313-56779332	Msa0171930:CDS	30.0%
GCAACAAAAGTTTCATGAAT+CGG	+	chr1_4:56779845-56779864	None:intergenic	30.0%
TCTAAAGGTCATTCAACTAA+AGG	-	chr1_4:56779884-56779903	Msa0171930:intron	30.0%
ACTAAAGGTTTAGAGATACT+TGG	-	chr1_4:56779899-56779918	Msa0171930:intron	30.0%
ATTATGATATTCGTCATGCT+TGG	-	chr1_4:56779939-56779958	Msa0171930:intron	30.0%
CATGCTTGGATAATTCTTAT+TGG	-	chr1_4:56779953-56779972	Msa0171930:intron	30.0%
AGTTTATGATCTCCTAATTG+AGG	-	chr1_4:56780169-56780188	Msa0171930:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	56778622	56787798	56778622	ID=Msa0171930;Name=Msa0171930
chr1_4	mRNA	56778622	56787798	56778622	ID=Msa0171930-mRNA-1;Parent=Msa0171930;Name=Msa0171930-mRNA-1;_AED=0.17;_eAED=0.17;_QI=134\|0.91\|0.92\|1\|1\|1\|13\|357\|892
chr1_4	exon	56778622	56779162	56778622	ID=Msa0171930-mRNA-1:exon:17301;Parent=Msa0171930-mRNA-1
chr1_4	exon	56779312	56779445	56779312	ID=Msa0171930-mRNA-1:exon:17300;Parent=Msa0171930-mRNA-1
chr1_4	exon	56780474	56780677	56780474	ID=Msa0171930-mRNA-1:exon:17299;Parent=Msa0171930-mRNA-1
chr1_4	exon	56780908	56781318	56780908	ID=Msa0171930-mRNA-1:exon:17298;Parent=Msa0171930-mRNA-1
chr1_4	exon	56781401	56781884	56781401	ID=Msa0171930-mRNA-1:exon:17297;Parent=Msa0171930-mRNA-1
chr1_4	exon	56782494	56782662	56782494	ID=Msa0171930-mRNA-1:exon:17296;Parent=Msa0171930-mRNA-1
chr1_4	exon	56783108	56783265	56783108	ID=Msa0171930-mRNA-1:exon:17295;Parent=Msa0171930-mRNA-1
chr1_4	exon	56784264	56784341	56784264	ID=Msa0171930-mRNA-1:exon:17294;Parent=Msa0171930-mRNA-1
chr1_4	exon	56785155	56785227	56785155	ID=Msa0171930-mRNA-1:exon:17293;Parent=Msa0171930-mRNA-1
chr1_4	exon	56785423	56785483	56785423	ID=Msa0171930-mRNA-1:exon:17292;Parent=Msa0171930-mRNA-1
chr1_4	exon	56786119	56786336	56786119	ID=Msa0171930-mRNA-1:exon:17291;Parent=Msa0171930-mRNA-1
chr1_4	exon	56786446	56786617	56786446	ID=Msa0171930-mRNA-1:exon:17290;Parent=Msa0171930-mRNA-1
chr1_4	exon	56787332	56787798	56787332	ID=Msa0171930-mRNA-1:exon:17289;Parent=Msa0171930-mRNA-1
chr1_4	five_prime_UTR	56787665	56787798	56787665	ID=Msa0171930-mRNA-1:five_prime_utr;Parent=Msa0171930-mRNA-1
chr1_4	CDS	56787332	56787664	56787332	ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4	CDS	56786446	56786617	56786446	ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4	CDS	56786119	56786336	56786119	ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4	CDS	56785423	56785483	56785423	ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4	CDS	56785155	56785227	56785155	ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4	CDS	56784264	56784341	56784264	ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4	CDS	56783108	56783265	56783108	ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4	CDS	56782494	56782662	56782494	ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4	CDS	56781401	56781884	56781401	ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4	CDS	56780908	56781318	56780908	ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4	CDS	56780474	56780677	56780474	ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4	CDS	56779312	56779445	56779312	ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4	CDS	56778979	56779162	56778979	ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4	three_prime_UTR	56778622	56778978	56778622	ID=Msa0171930-mRNA-1:three_prime_utr;Parent=Msa0171930-mRNA-1

Gene Sequence

>Msa0171930

ATGCATTCATGTTACAGTTACAGTTACGGCTCCACTTACATCCCCTTCAAATTAAACCGCTTAACTCCTCGAACCGGACCGGTTCGAGCAGCGCTATCTTCTCCAGAGAAGCGGACCAGAAAGAAGAAGCAAGTGAAAGATGATGACACTTTACTTGAGAACAGTCTCCGGTTCAGTTTCATGGAAGAGCTCATGAACCGGGCTAGGAACCGTGACTCAACCGGAGTTTCTCAAGTTATGTATGATATGATTGCTGCTGGTTTGAGTCCTGGTCCTAGGTCGTTTCATGGTTTGGTTGTTTCCTATGCTCTTAATGGCGATGAACAAGCCGCGATGGATTCGTTGAGGAGAGAGTTAGGTGCAGGGCTTCGACCGATTCATGAAACTTTTGTTGCATTGGTGAGATTGTTTGGGTCTAAAGGTCATTCAACTAAAGGTTTAGAGATACTTGGAGCTATGGAGAATCTAAATTATGATATTCGTCATGCTTGGATAATTCTTATTGAGGAACTTGTTCGGAACAAGCATTTGGAAGATGCTAATAAAGTGTTCTTGAAGGGTGCTAAGGGTGGCCTCCGGGCTACTGATGAAGTTTATGATCTCCTAATTGAGGAAGATTGCAAAGCTGGAGATCACTCTAATGCTTTGGAAATTTCGTACGAGATGGAAGCTGCTGGACGAATGGCAACAACATTCCATTTTAATTGCCTACTTTCTGTGCAGGCTACCTGCGGAATACCTGAAATAGCCTTTACAACATTTGAGAACATGGAATATGGAGAAGATTATATGAAGCCTGATACAGAAACATACAATTGGGTCATTCAAGCGTATACTAGAGCCGACTCTTATGACAGAGTTCAAGATGTCGCTGAGTTGCTTGGCATGATGGTTGAAGATCATAAGCGCGTACAGCCAAATGTTAAGACCCATGCGCTGTTAGTGGAGTGTTTTACCAAGTACTGTGTAGTACGAGAAGCTATCAGGCATTTCCGAGCACTTAAAAACTTTGAAGGGGGAACGAAAATTCTACATATGGATGGGAACCACGGAGATCCTCTTTCTTTGTACCTTCGGGCATTGTGTCGGGAAGGTAGGATTATTGACATGCTTGAAGCTTTAGAGGCTATGGCCAACGATAACCAGAAAATCCCTCCACGGGCAATGATCTTGAGCAGAAAATACCGGACATTAGTGAGCTCATGGATTGAACCTTTGCAAGAGGAGGCTGAACTTGGTTATGAGATTGATTATATTGCTAGATATGTTGAAGAAGGTGGCCTTACTGGAGAGCGCAAACGGTGGGTGCCCCGAAGTGGTAAAACACCTCTAGATCCTGATGCTGATGGATTTATATATTCAAACCCAATGGAGACTTCCTTCAAACAAAGATGCCTTGAGGAGAAGAAGGTGTACCATAAGAAGCTTCTGAAGAAGTTGCAGTATGAAGGAATTGTAGCTTTAGGGGATGGTGCATCTGAATCCGATTATGTTAGAGTGATTGAGTGGCTAAAGAAAATCATAAAGGGGCCTGAACAGAATGCATTAAAGCCTAAGGCGGCTAGTAAAATGCTTGTGAATGAATTGAAGGAAGAACTAGAAGCACAAGGTTTACCAATCGATGGAACCAGAAATGTTCTTTACCAGCGTGTTCAGAAAGCAAGAAGAATAAATCAATCTCGTGGTCGGCCGCTTTGGGTTCCTCCCGTTGAAGAGGAAGAAGAAGTGGTTGATTCTTTATCTGTTGTGGATGAAGAGCTGGATGCATTGATCTCACGCATAAAGCTGGAGGAAGGAAATACAGAGTATTGGAAACGTCGCTTCTTAGGAGAAGGCTTAAATGGTGATAATGGAAATGCAATGGATGAAGGTGAATCAGAGTCCCCTGATGTTCAAGATTATATTGATGTTGTAGGGGATGATGCAAAAGAGGCTGAAGATGATGAAGCAGATGAGGATGAGGAGGAGGAAGTAGAACAGGTAGAAGAGGAAGTAGCACCAGTAGAGAACCAAGATGTAGAGAGGATAAAGGAAAAGGAAGTTGAATCTAAAAAACCCCTTCAAATGATTGGAGTCCAGCTGTTGAAAGATTCTGACGAACCCTCTGCCACTTCTAAAAAGTCAAGAAGAAGAAGATCAAGACGGAATATGGTTGAGGATGATGCCGATGATGATTGGTTTCCTTTGGACATATTTGAGGCGTTTAAGGAAATGAGGAATCGAAGAGTGTTTGATGTATCAGACATGTATACCTTAGCAGATGCTTGGGGATGGACATGGGAGAGAGAACTGAAGAACAAACCTCCTCATAGGTGGTCACAGGAATGGGAAGTAGATTTGGCAATAAAAGTTATGCAGAAGGTCATACAATTGGGAGGGACACCAACTATCGGAGATTGTGCCGTGATCTTGCGCGCAGCTATAACAGCACCTCTACCTTCAGCTTTCTTGACAATTCTGCAGACAACTCATAGTCTTGGCTATAAGTTTGGGAGACCGCTTTATGACGAGGTCATCTCTCTCTGCCTTGATCTTGGGGAACTAGATGCAGCTGTTGCCGTTGTGGCAGACTTGGAGACCACGGGGATCTCAGTTTCAGATCAGACTTTGGACAGGGTGATTTCTGCTAAACAGGGGATTGACAATCCTTCAAATGATGGCATGGATGCTGGACTGTAA

Protein sequence

>Msa0171930

MHSCYSYSYGSTYIPFKLNRLTPRTGPVRAALSSPEKRTRKKKQVKDDDTLLENSLRFSFMEELMNRARNRDSTGVSQVMYDMIAAGLSPGPRSFHGLVVSYALNGDEQAAMDSLRRELGAGLRPIHETFVALVRLFGSKGHSTKGLEILGAMENLNYDIRHAWIILIEELVRNKHLEDANKVFLKGAKGGLRATDEVYDLLIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFTTFENMEYGEDYMKPDTETYNWVIQAYTRADSYDRVQDVAELLGMMVEDHKRVQPNVKTHALLVECFTKYCVVREAIRHFRALKNFEGGTKILHMDGNHGDPLSLYLRALCREGRIIDMLEALEAMANDNQKIPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYVEEGGLTGERKRWVPRSGKTPLDPDADGFIYSNPMETSFKQRCLEEKKVYHKKLLKKLQYEGIVALGDGASESDYVRVIEWLKKIIKGPEQNALKPKAASKMLVNELKEELEAQGLPIDGTRNVLYQRVQKARRINQSRGRPLWVPPVEEEEEVVDSLSVVDEELDALISRIKLEEGNTEYWKRRFLGEGLNGDNGNAMDEGESESPDVQDYIDVVGDDAKEAEDDEADEDEEEEVEQVEEEVAPVENQDVERIKEKEVESKKPLQMIGVQLLKDSDEPSATSKKSRRRRSRRNMVEDDADDDWFPLDIFEAFKEMRNRRVFDVSDMYTLADAWGWTWERELKNKPPHRWSQEWEVDLAIKVMQKVIQLGGTPTIGDCAVILRAAITAPLPSAFLTILQTTHSLGYKFGRPLYDEVISLCLDLGELDAAVAVVADLETTGISVSDQTLDRVISAKQGIDNPSNDGMDAGL*