AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0171930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171930 MtrunA17_Chr1g0189881 96.861 892 20 2 1 892 1 884 0.0 1781
Msa0171930 MtrunA17_Chr1g0170071 23.003 313 211 8 95 402 446 733 2.13e-13 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171930 AT3G04260.1 69.627 912 217 10 15 886 9 900 0.0 1244
Msa0171930 AT1G18900.4 20.664 271 205 4 59 327 366 628 2.05e-11 68.6
Msa0171930 AT1G18900.2 20.664 271 205 4 59 327 366 628 2.05e-11 68.6
Msa0171930 AT1G18900.1 20.664 271 205 4 59 327 366 628 2.05e-11 68.6
Msa0171930 AT1G18900.3 20.664 271 205 4 59 327 366 628 2.35e-11 68.2
Msa0171930 AT4G20090.2 21.555 283 186 4 68 316 268 548 3.90e-11 67.4
Msa0171930 AT4G20090.1 21.555 283 186 4 68 316 268 548 3.90e-11 67.4
Msa0171930 AT3G06920.2 21.672 323 230 5 59 377 114 417 4.12e-11 67.4
Msa0171930 AT3G06920.3 21.672 323 230 5 59 377 114 417 4.12e-11 67.4
Msa0171930 AT3G06920.1 21.672 323 230 5 59 377 100 403 4.31e-11 67.4

Find 274 sgRNAs with CRISPR-Local

Find 619 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCACTTGCTTCTTCTTTC+TGG 0.041062 1_4:+56787527 None:intergenic
ATTTGACTTTGTTGTGAATT+TGG 0.167450 1_4:-56778750 Msa0171930:three_prime_UTR
CAATTGTATGTTTCTGTATC+AGG 0.199796 1_4:+56785194 None:intergenic
GGACATATTTGAGGCGTTTA+AGG 0.213661 1_4:-56780626 Msa0171930:CDS
GTTGAAGAAGGTGGCCTTAC+TGG 0.228055 1_4:-56781858 Msa0171930:CDS
CATGCTTGGATAATTCTTAT+TGG 0.232865 1_4:-56786445 Msa0171930:intron
CATAGTCTTGGCTATAAGTT+TGG 0.235188 1_4:-56779315 Msa0171930:CDS
GTTGTTTCCTATGCTCTTAA+TGG 0.237736 1_4:-56787348 Msa0171930:CDS
AGAAATATTGCATTGGAAAA+TGG 0.245483 1_4:+56778636 None:intergenic
AATCTCGTGGTCGGCCGCTT+TGG 0.249279 1_4:-56781449 Msa0171930:CDS
ATCTCTCTCTGCCTTGATCT+TGG 0.250220 1_4:-56779121 Msa0171930:CDS
ATCTCGTGGTCGGCCGCTTT+GGG 0.251517 1_4:-56781448 Msa0171930:CDS
TGACATGCTTGAAGCTTTAG+AGG 0.252961 1_4:-56782630 Msa0171930:CDS
AATGTTGTAAAGGCTATTTC+AGG 0.254892 1_4:+56785446 None:intergenic
TTCTTTCTGGTCCGCTTCTC+TGG 0.257169 1_4:+56787540 None:intergenic
CTTTGCAATCTTCCTCAATT+AGG 0.261134 1_4:+56786217 None:intergenic
TATGAAGGAATTGTAGCTTT+AGG 0.264884 1_4:-56781681 Msa0171930:CDS
TTCTTAGGAGAAGGCTTAAA+TGG 0.269093 1_4:-56781221 Msa0171930:CDS
TCTCTCTCTGCCTTGATCTT+GGG 0.272245 1_4:-56779120 Msa0171930:CDS
TATTGGAAACGTCGCTTCTT+AGG 0.272559 1_4:-56781236 Msa0171930:CDS
GGCTTTAATGCATTCTGTTC+AGG 0.274497 1_4:+56781594 None:intergenic
ATCCTCTTTCTTTGTACCTT+CGG 0.284296 1_4:-56783124 Msa0171930:CDS
CAGGGTGATTTCTGCTAAAC+AGG 0.287108 1_4:-56779023 Msa0171930:CDS
TACAAACATGGCAAGTTTCC+TGG 0.289374 1_4:+56778818 None:intergenic
ATGAAGGAATTGTAGCTTTA+GGG 0.297375 1_4:-56781680 Msa0171930:CDS
CCTGGTCCTAGGTCGTTTCA+TGG 0.300418 1_4:-56787375 Msa0171930:CDS
GTTGCATTGGTGAGATTGTT+TGG 0.310243 1_4:-56786538 Msa0171930:CDS
CCTTTATCCTCTCTACATCT+TGG 0.319914 1_4:+56781033 None:intergenic
TCCTAGGTCGTTTCATGGTT+TGG 0.321573 1_4:-56787370 Msa0171930:CDS
CAGAAAGTAGGCAATTAAAA+TGG 0.327312 1_4:+56786124 None:intergenic
AAGAAGATCAAGACGGAATA+TGG 0.330554 1_4:-56780913 Msa0171930:CDS
ACTTCTTCAGAAGCTTCTTA+TGG 0.332257 1_4:+56781709 None:intergenic
CAAGATTATATTGATGTTGT+AGG 0.332546 1_4:-56781149 Msa0171930:CDS
CAGTCTCCGGTTCAGTTTCA+TGG 0.340281 1_4:-56787481 Msa0171930:CDS
TCCTCTTTCTTTGTACCTTC+GGG 0.347813 1_4:-56783123 Msa0171930:CDS
GAAGGCTTAAATGGTGATAA+TGG 0.348591 1_4:-56781212 Msa0171930:CDS
ACATTTGAGAACATGGAATA+TGG 0.349524 1_4:-56785428 Msa0171930:CDS
TACGCATGGGTCTTAACATT+TGG 0.361720 1_4:+56784261 None:intergenic
ACGCTGGTAAAGAACATTTC+TGG 0.365600 1_4:+56781497 None:intergenic
TTCCACACATATAAGTTTAG+TGG 0.366305 1_4:+56778714 None:intergenic
CTCAAGGCATCTTTGTTTGA+AGG 0.368508 1_4:+56781746 None:intergenic
AATGCATGTGTAATGAGTTT+TGG 0.370623 1_4:+56787658 None:intergenic
GATTCGTTGAGGAGAGAGTT+AGG 0.373234 1_4:-56786592 Msa0171930:CDS
TGAGGAGGAGGAAGTAGAAC+AGG 0.374648 1_4:-56781084 Msa0171930:CDS
CCAAGATGTAGAGAGGATAA+AGG 0.374896 1_4:-56781033 Msa0171930:CDS
CTCAATCACTCTAACATAAT+CGG 0.375012 1_4:+56781641 None:intergenic
ACAGGAATGGGAAGTAGATT+TGG 0.377821 1_4:-56780494 Msa0171930:CDS
TCAATATAATCTTGAACATC+AGG 0.378485 1_4:+56781158 None:intergenic
CGATGATGATTGGTTTCCTT+TGG 0.382643 1_4:-56780647 Msa0171930:CDS
TATTACTCAGGTCATACAAT+TGG 0.387619 1_4:-56779433 Msa0171930:intron
CTGATACAGAAACATACAAT+TGG 0.391148 1_4:-56785193 Msa0171930:CDS
GTGTAGTACGAGAAGCTATC+AGG 0.395805 1_4:-56783214 Msa0171930:CDS
TTGCATTGGTGAGATTGTTT+GGG 0.403589 1_4:-56786537 Msa0171930:CDS
ACTTGTTCGGAACAAGCATT+TGG 0.403714 1_4:-56786310 Msa0171930:CDS
TCTAAAGGTCATTCAACTAA+AGG 0.403798 1_4:-56786514 Msa0171930:CDS
GTATACCTTAGCAGATGCTT+GGG 0.406507 1_4:-56780566 Msa0171930:CDS
GTGGCTAAAGAAAATCATAA+AGG 0.407640 1_4:-56781619 Msa0171930:CDS
AAGATTATATTGATGTTGTA+GGG 0.408658 1_4:-56781148 Msa0171930:CDS
TCAAATGATGGCATGGATGC+TGG 0.411727 1_4:-56778986 Msa0171930:CDS
CTCTCTCTGCCTTGATCTTG+GGG 0.413360 1_4:-56779119 Msa0171930:CDS
ATTGCTGCTGGTTTGAGTCC+TGG 0.414764 1_4:-56787393 Msa0171930:CDS
TGGCTAAAGAAAATCATAAA+GGG 0.417296 1_4:-56781618 Msa0171930:CDS
CTCAGTTTCAGATCAGACTT+TGG 0.418813 1_4:-56779047 Msa0171930:CDS
GTGTCTCTGTAGGCTGTTAG+TGG 0.422094 1_4:-56783255 Msa0171930:intron
TGACTGACTGGGTTGGTTGT+TGG 0.429704 1_4:+56778675 None:intergenic
CACTTCTTCTTCCTCTTCAA+CGG 0.429858 1_4:+56781419 None:intergenic
AGGGTGCTAAGGGTGGCCTC+CGG 0.429874 1_4:-56786263 Msa0171930:CDS
GTACCTTCGGGCATTGTGTC+GGG 0.434022 1_4:-56783111 Msa0171930:CDS
TCATGGAAGAGCTCATGAAC+CGG 0.435524 1_4:-56787464 Msa0171930:CDS
GTGAGATTGTTTGGGTCTAA+AGG 0.436042 1_4:-56786529 Msa0171930:CDS
GCTCGAACCGGTCCGGTTCG+AGG 0.436749 1_4:+56787576 None:intergenic
ATAGTCTTGGCTATAAGTTT+GGG 0.438580 1_4:-56779314 Msa0171930:CDS
CTGGTTTGAGTCCTGGTCCT+AGG 0.439993 1_4:-56787386 Msa0171930:CDS
TAATTTGAAGGGGATGTAAG+TGG 0.442112 1_4:+56787611 None:intergenic
GGGTGCTAAGGGTGGCCTCC+GGG 0.442546 1_4:-56786262 Msa0171930:CDS
TGATGAAGCAGATGAGGATG+AGG 0.443071 1_4:-56781102 Msa0171930:CDS
GGGAACGAAAATTCTACATA+TGG 0.444084 1_4:-56783162 Msa0171930:CDS
TCATAGGTGGTCACAGGAAT+GGG 0.445146 1_4:-56780506 Msa0171930:CDS
TTGCAAGAGGAGGCTGAACT+TGG 0.445377 1_4:-56782518 Msa0171930:CDS
TTGAGTCACGGTTCCTAGCC+CGG 0.446872 1_4:+56787445 None:intergenic
AGTTAAGCGGTTTAATTTGA+AGG 0.447280 1_4:+56787599 None:intergenic
GTTTCCTTTGGACATATTTG+AGG 0.447679 1_4:-56780635 Msa0171930:CDS
ACTAAAGGTTTAGAGATACT+TGG 0.447828 1_4:-56786499 Msa0171930:CDS
ACTTCTTCTTCCTCTTCAAC+GGG 0.449381 1_4:+56781420 None:intergenic
GTTTGAAGGAAGTCTCCATT+GGG 0.451557 1_4:+56781760 None:intergenic
TCTACATCTTGGTTCTCTAC+TGG 0.452436 1_4:+56781044 None:intergenic
ACATTTCTGGTTCCATCGAT+TGG 0.452894 1_4:+56781510 None:intergenic
GCATCCATGCCATCATTTGA+AGG 0.454328 1_4:+56778989 None:intergenic
AGCAGATGAGGATGAGGAGG+AGG 0.454688 1_4:-56781096 Msa0171930:CDS
TGGAGATCACTCTAATGCTT+TGG 0.454772 1_4:-56786193 Msa0171930:CDS
TGCTAATAAAGTGTTCTTGA+AGG 0.455076 1_4:-56786283 Msa0171930:CDS
TGTTTGAAGGAAGTCTCCAT+TGG 0.456929 1_4:+56781759 None:intergenic
CGTCAGAATCTTTCAACAGC+TGG 0.459389 1_4:+56780967 None:intergenic
ATTGAGGAAGATTGCAAAGC+TGG 0.461029 1_4:-56786213 Msa0171930:CDS
CGCTGAGTTGCTTGGCATGA+TGG 0.461983 1_4:-56784307 Msa0171930:CDS
TAATTGCCTACTTTCTGTGC+AGG 0.463917 1_4:-56786118 Msa0171930:intron
CATGTTCTCAAATGTTGTAA+AGG 0.465556 1_4:+56785436 None:intergenic
TTGAGGAGAGAGTTAGGTGC+AGG 0.466086 1_4:-56786586 Msa0171930:CDS
GCAACAAAAGTTTCATGAAT+CGG 0.467606 1_4:+56786556 None:intergenic
TATATAAATCCATCAGCATC+AGG 0.468220 1_4:+56781789 None:intergenic
GCTAGGAACCGTGACTCAAC+CGG 0.468909 1_4:-56787441 Msa0171930:CDS
AATGCTTGTGAATGAATTGA+AGG 0.472351 1_4:-56781556 Msa0171930:CDS
GAAGATAGCGCTGCTCGAAC+CGG 0.473315 1_4:+56787564 None:intergenic
TGTAGAGAGGATAAAGGAAA+AGG 0.474054 1_4:-56781027 Msa0171930:CDS
ATTATGATATTCGTCATGCT+TGG 0.475108 1_4:-56786459 Msa0171930:CDS
TTTAGAGATACTTGGAGCTA+TGG 0.477423 1_4:-56786491 Msa0171930:CDS
TGAAGAACAAACCTCCTCAT+AGG 0.478258 1_4:-56780522 Msa0171930:CDS
GCTTGAAGCTTTAGAGGCTA+TGG 0.478270 1_4:-56782624 Msa0171930:CDS
GCCTTACTGGAGAGCGCAAA+CGG 0.481001 1_4:-56781845 Msa0171930:CDS
ACGAAAATTCTACATATGGA+TGG 0.481360 1_4:-56783158 Msa0171930:CDS
AGGATGATGCCGATGATGAT+TGG 0.484108 1_4:-56780657 Msa0171930:CDS
TGTACCTTCGGGCATTGTGT+CGG 0.486756 1_4:-56783112 Msa0171930:CDS
AAGAGCTCATGAACCGGGCT+AGG 0.488986 1_4:-56787458 Msa0171930:CDS
GCTCTTCCATGAAACTGAAC+CGG 0.489171 1_4:+56787475 None:intergenic
TTGAGGCGTTTAAGGAAATG+AGG 0.491957 1_4:-56780618 Msa0171930:CDS
CTCATAGGTGGTCACAGGAA+TGG 0.492800 1_4:-56780507 Msa0171930:CDS
TCATGTTACAGTTACAGTTA+CGG 0.493562 1_4:-56787636 Msa0171930:CDS
CTGAAGAAGTTGCAGTATGA+AGG 0.497200 1_4:-56781696 Msa0171930:CDS
TTCTCGTACTACACAGTACT+TGG 0.497777 1_4:+56783223 None:intergenic
GGAAGTAGAACAGGTAGAAG+AGG 0.498046 1_4:-56781075 Msa0171930:CDS
TGTATACCTTAGCAGATGCT+TGG 0.498537 1_4:-56780567 Msa0171930:CDS
GTTAAGCGGTTTAATTTGAA+GGG 0.500541 1_4:+56787600 None:intergenic
CTTTACAACATTTGAGAACA+TGG 0.500631 1_4:-56785435 Msa0171930:CDS
ACCGTTTGCGCTCTCCAGTA+AGG 0.500952 1_4:+56781844 None:intergenic
AAGTGATGAATTTGACTGAC+TGG 0.502470 1_4:+56778663 None:intergenic
AGTGTTCTTGAAGGGTGCTA+AGG 0.503999 1_4:-56786274 Msa0171930:CDS
CAAGATGTCGCTGAGTTGCT+TGG 0.504075 1_4:-56784315 Msa0171930:CDS
ATGAGATTGATTATATTGCT+AGG 0.506892 1_4:-56782493 Msa0171930:intron
GGCAATAAAAGTTATGCAGA+AGG 0.507370 1_4:-56780473 Msa0171930:intron
AGTTTATGATCTCCTAATTG+AGG 0.508876 1_4:-56786229 Msa0171930:CDS
GCTGGACTCCAATCATTTGA+AGG 0.509707 1_4:+56780985 None:intergenic
ATTACTCAGGTCATACAATT+GGG 0.512330 1_4:-56779432 Msa0171930:intron
TAGCGCTGCTCGAACCGGTC+CGG 0.512424 1_4:+56787569 None:intergenic
ATAGTGTTCTGTTGAGTGTC+GGG 0.514135 1_4:+56787708 None:intergenic
ACCGGACATTAGTGAGCTCA+TGG 0.514155 1_4:-56782550 Msa0171930:CDS
TCGTGTGTGTGTTGATGATA+AGG 0.515833 1_4:+56787747 None:intergenic
ATTGACAATCCTTCAAATGA+TGG 0.516346 1_4:-56778998 Msa0171930:CDS
TTTCAGATCAGACTTTGGAC+AGG 0.516371 1_4:-56779042 Msa0171930:CDS
CCATGAAACGACCTAGGACC+AGG 0.516577 1_4:+56787375 None:intergenic
CATCTAGTTCCCCAAGATCA+AGG 0.517160 1_4:+56779110 None:intergenic
ATGTATGATATGATTGCTGC+TGG 0.518748 1_4:-56787405 Msa0171930:CDS
AGGAAGGAAATACAGAGTAT+TGG 0.519082 1_4:-56781253 Msa0171930:CDS
CAGATGCTTGGGGATGGACA+TGG 0.521819 1_4:-56780555 Msa0171930:CDS
TACTGGAGAGCGCAAACGGT+GGG 0.522806 1_4:-56781841 Msa0171930:CDS
CGAAAATTCTACATATGGAT+GGG 0.522815 1_4:-56783157 Msa0171930:CDS
AACCGCTTAACTCCTCGAAC+CGG 0.523138 1_4:-56787588 Msa0171930:CDS
GTGTTCTTGAAGGGTGCTAA+GGG 0.523495 1_4:-56786273 Msa0171930:CDS
TGAAGCAGATGAGGATGAGG+AGG 0.524641 1_4:-56781099 Msa0171930:CDS
CCTCTAGATCCTGATGCTGA+TGG 0.527945 1_4:-56781798 Msa0171930:CDS
GGAATTGTAGCTTTAGGGGA+TGG 0.529201 1_4:-56781675 Msa0171930:CDS
CTGCAGACAACTCATAGTCT+TGG 0.531365 1_4:-56779327 Msa0171930:CDS
CTGGACTCCAATCATTTGAA+GGG 0.535035 1_4:+56780986 None:intergenic
AAACGTCGCTTCTTAGGAGA+AGG 0.535168 1_4:-56781230 Msa0171930:CDS
GGCTATTTCAGGTATTCCGC+AGG 0.537975 1_4:+56785457 None:intergenic
TGAAACAGATATGTTGAAGA+AGG 0.538831 1_4:-56781870 Msa0171930:intron
ATTGATCTCACGCATAAAGC+TGG 0.539841 1_4:-56781276 Msa0171930:CDS
TGTTGCCGTTGTGGCAGACT+TGG 0.541052 1_4:-56779083 Msa0171930:CDS
CGCTATCTTCTCCAGAGAAG+CGG 0.541700 1_4:-56787551 Msa0171930:CDS
GTCAAGAAAGCTGAAGGTAG+AGG 0.542367 1_4:+56779354 None:intergenic
CATTCCTGTGACCACCTATG+AGG 0.543065 1_4:+56780508 None:intergenic
GTGGCAGACTTGGAGACCAC+GGG 0.546147 1_4:-56779073 Msa0171930:CDS
ATCAAGACGGAATATGGTTG+AGG 0.548653 1_4:-56780907 Msa0171930:intron
TGATACAGAAACATACAATT+GGG 0.550134 1_4:-56785192 Msa0171930:CDS
GAGAACATGGAATATGGAGA+AGG 0.551432 1_4:-56785422 Msa0171930:intron
TCGTACGAGATGGAAGCTGC+TGG 0.553912 1_4:-56786165 Msa0171930:CDS
GCTAATAAAGTGTTCTTGAA+GGG 0.554329 1_4:-56786282 Msa0171930:CDS
AAGATGCCTTGAGGAGAAGA+AGG 0.554498 1_4:-56781736 Msa0171930:CDS
GTGATGTAGAGGAACTTGTT+CGG 0.554653 1_4:-56786323 Msa0171930:intron
TCCATGAGCTCACTAATGTC+CGG 0.555426 1_4:+56782549 None:intergenic
CTTTACTTGAGAACAGTCTC+CGG 0.555521 1_4:-56787494 Msa0171930:CDS
CATGGAAGAGCTCATGAACC+GGG 0.556722 1_4:-56787463 Msa0171930:CDS
AGTTGACCTGCACAGAAAGT+AGG 0.557940 1_4:+56786112 None:intergenic
CATAAACTTCATCAGTAGCC+CGG 0.562590 1_4:+56786244 None:intergenic
GATAGTGTTCTGTTGAGTGT+CGG 0.567440 1_4:+56787707 None:intergenic
TCAAGATCATTGCCCGTGGA+GGG 0.567551 1_4:+56782582 None:intergenic
AATGGAAATGCAATGGATGA+AGG 0.568839 1_4:-56781194 Msa0171930:CDS
CCTTAGCAGATGCTTGGGGA+TGG 0.569249 1_4:-56780561 Msa0171930:CDS
GCCCGAAGGTACAAAGAAAG+AGG 0.570089 1_4:+56783122 None:intergenic
TATAGCTGCGCGCAAGATCA+CGG 0.570372 1_4:+56779383 None:intergenic
CAATATAATCTTGAACATCA+GGG 0.571529 1_4:+56781159 None:intergenic
CAATCCTTCAAATGATGGCA+TGG 0.571720 1_4:-56778993 Msa0171930:CDS
ACCTCCTCATAGGTGGTCAC+AGG 0.573478 1_4:-56780512 Msa0171930:CDS
ACGGCACAATCTCCGATAGT+TGG 0.574114 1_4:+56779402 None:intergenic
GATGGAAGCTGCTGGACGAA+TGG 0.574338 1_4:-56786157 Msa0171930:CDS
TTGGGTTCCTCCCGTTGAAG+AGG 0.576094 1_4:-56781430 Msa0171930:CDS
TTCATCGCCATTAAGAGCAT+AGG 0.576915 1_4:+56787341 None:intergenic
GTTGCAGGTGGATGAAGAGC+TGG 0.578409 1_4:-56781303 Msa0171930:intron
ATTTATATATTCAAACCCAA+TGG 0.578723 1_4:-56781775 Msa0171930:CDS
CACCACTAAACTTATATGTG+TGG 0.579770 1_4:-56778716 Msa0171930:three_prime_UTR
TTCTTGAAGGGTGCTAAGGG+TGG 0.579853 1_4:-56786270 Msa0171930:CDS
AGATTATATTGATGTTGTAG+GGG 0.580630 1_4:-56781147 Msa0171930:CDS
CTTAACTCCTCGAACCGGAC+CGG 0.580909 1_4:-56787583 Msa0171930:CDS
AGTTCAGCCTCCTCTTGCAA+AGG 0.581011 1_4:+56782521 None:intergenic
GTCTTGGCTATAAGTTTGGG+AGG 0.581497 1_4:-56779311 Msa0171930:intron
ACAGAATGCATTAAAGCCTA+AGG 0.584058 1_4:-56781589 Msa0171930:CDS
CTCAAGATCATTGCCCGTGG+AGG 0.584251 1_4:+56782581 None:intergenic
TTTGGAAATTTCGTACGAGA+TGG 0.584263 1_4:-56786175 Msa0171930:CDS
TGATCTTGAGCAGAAAATAC+CGG 0.584433 1_4:-56782568 Msa0171930:CDS
ATGAATTTGACTGACTGGGT+TGG 0.587864 1_4:+56778668 None:intergenic
TGGTGATAATGGAAATGCAA+TGG 0.588240 1_4:-56781201 Msa0171930:CDS
TTAATGTATAGTATCAGTCC+AGG 0.588921 1_4:-56778836 Msa0171930:three_prime_UTR
AACGCCTCAAATATGTCCAA+AGG 0.589906 1_4:+56780631 None:intergenic
CAAAGGAAACCAATCATCAT+CGG 0.590127 1_4:+56780648 None:intergenic
GGTACACCTTCTTCTCCTCA+AGG 0.591446 1_4:+56781730 None:intergenic
ATGGATTGAACCTTTGCAAG+AGG 0.591732 1_4:-56782531 Msa0171930:CDS
TTAAGCGGTTTAATTTGAAG+GGG 0.591930 1_4:+56787601 None:intergenic
TCCTGTGACCACCTATGAGG+AGG 0.592541 1_4:+56780511 None:intergenic
CCATCAGCATCAGGATCTAG+AGG 0.596125 1_4:+56781798 None:intergenic
AACTAACCTGTCATAAGAGT+CGG 0.597204 1_4:+56785148 None:intergenic
TGAAGGAATTGTAGCTTTAG+GGG 0.598298 1_4:-56781679 Msa0171930:CDS
GCACAAGGTTTACCAATCGA+TGG 0.599603 1_4:-56781522 Msa0171930:CDS
AGAATTGTCAAGAAAGCTGA+AGG 0.601296 1_4:+56779348 None:intergenic
TTGGGAGGGACACCAACTAT+CGG 0.601421 1_4:-56779414 Msa0171930:CDS
CCATCCCCAAGCATCTGCTA+AGG 0.602394 1_4:+56780561 None:intergenic
TGGACTCCAATCATTTGAAG+GGG 0.603662 1_4:+56780987 None:intergenic
CTGCTCAAGATCATTGCCCG+TGG 0.604098 1_4:+56782578 None:intergenic
CGTTGAAGAGGAAGAAGAAG+TGG 0.604494 1_4:-56781418 Msa0171930:CDS
GAGAAACTCCGGTTGAGTCA+CGG 0.604588 1_4:+56787433 None:intergenic
TTCAGATCAGACTTTGGACA+GGG 0.605217 1_4:-56779041 Msa0171930:CDS
TAACCAGAAAATCCCTCCAC+GGG 0.606115 1_4:-56782594 Msa0171930:CDS
AAACGGTGGGTGCCCCGAAG+TGG 0.606401 1_4:-56781828 Msa0171930:CDS
AGATGCAGCTGTTGCCGTTG+TGG 0.606633 1_4:-56779092 Msa0171930:CDS
TCACGCATAAAGCTGGAGGA+AGG 0.607414 1_4:-56781269 Msa0171930:CDS
CTAGAGCCGACTCTTATGAC+AGG 0.610474 1_4:-56785154 Msa0171930:intron
GAATAAATCAATCTCGTGGT+CGG 0.611091 1_4:-56781458 Msa0171930:CDS
TAGAGAACCAAGATGTAGAG+AGG 0.611802 1_4:-56781040 Msa0171930:CDS
CTTCGGGCATTGTGTCGGGA+AGG 0.612050 1_4:-56783107 Msa0171930:intron
AGATGCTTGGGGATGGACAT+GGG 0.614332 1_4:-56780554 Msa0171930:CDS
ATACATAACTTGAGAAACTC+CGG 0.614556 1_4:+56787422 None:intergenic
GATTGAACCTTTGCAAGAGG+AGG 0.617007 1_4:-56782528 Msa0171930:CDS
GTCCGGTTCGAGGAGTTAAG+CGG 0.620169 1_4:+56787586 None:intergenic
AACAGATATGTTGAAGAAGG+TGG 0.621152 1_4:-56781867 Msa0171930:intron
TGTAGGGGATGATGCAAAAG+AGG 0.623728 1_4:-56781132 Msa0171930:CDS
TGTGGCAGACTTGGAGACCA+CGG 0.624571 1_4:-56779074 Msa0171930:CDS
TGAGGAGAGAGTTAGGTGCA+GGG 0.625282 1_4:-56786585 Msa0171930:CDS
CTCAGGTCATACAATTGGGA+GGG 0.626997 1_4:-56779428 Msa0171930:intron
TGAGAGTTGAAAGAGTGAAG+TGG 0.632866 1_4:+56787683 None:intergenic
ACTCAGGTCATACAATTGGG+AGG 0.634186 1_4:-56779429 Msa0171930:intron
ATTATGTTAGAGTGATTGAG+TGG 0.634643 1_4:-56781638 Msa0171930:CDS
TTGCAGACCGCTTTATGACG+AGG 0.635470 1_4:-56779146 Msa0171930:intron
GCACGACAGTTCTACAAACA+TGG 0.635632 1_4:+56778806 None:intergenic
TCTTCTTCCTCTTCAACGGG+AGG 0.635806 1_4:+56781423 None:intergenic
TTATGCAGATGGATTCGTTG+AGG 0.636188 1_4:-56786603 Msa0171930:intron
GGTCTCCAAGTCTGCCACAA+CGG 0.639161 1_4:+56779078 None:intergenic
TGAAGATGATGAAGCAGATG+AGG 0.643572 1_4:-56781108 Msa0171930:CDS
AATATAATCTTGAACATCAG+GGG 0.644115 1_4:+56781160 None:intergenic
CAAGAAGAAGAAGATCAAGA+CGG 0.644210 1_4:-56780920 Msa0171930:CDS
TTACTGGAGAGCGCAAACGG+TGG 0.645299 1_4:-56781842 Msa0171930:CDS
GGCTAAAGAAAATCATAAAG+GGG 0.647563 1_4:-56781617 Msa0171930:CDS
AGAAGAATAAATCAATCTCG+TGG 0.648152 1_4:-56781462 Msa0171930:CDS
CAAATTAAATAGGCTACCTG+CGG 0.650468 1_4:-56785473 Msa0171930:intron
GAGATGACCTCGTCATAAAG+CGG 0.653121 1_4:+56779139 None:intergenic
ATAACCAGAAAATCCCTCCA+CGG 0.655773 1_4:-56782595 Msa0171930:CDS
AAAACAGTAGTACCGCATGA+AGG 0.659287 1_4:+56778948 None:intergenic
AGGGTGATTTCTGCTAAACA+GGG 0.660207 1_4:-56779022 Msa0171930:CDS
CTACATATGGATGGGAACCA+CGG 0.664930 1_4:-56783149 Msa0171930:CDS
CTTCAAACAAAGATGCCTTG+AGG 0.665499 1_4:-56781745 Msa0171930:CDS
AGTGATGAATTTGACTGACT+GGG 0.666099 1_4:+56778664 None:intergenic
TCAACGGGAGGAACCCAAAG+CGG 0.666771 1_4:+56781435 None:intergenic
AGAACAAACCTCCTCATAGG+TGG 0.666839 1_4:-56780519 Msa0171930:CDS
GATCTCACGCATAAAGCTGG+AGG 0.669561 1_4:-56781273 Msa0171930:CDS
TAATGGCGATGAACAAGCCG+CGG 0.672755 1_4:-56787331 Msa0171930:intron
AAGGAAGAACTAGAAGCACA+AGG 0.676402 1_4:-56781537 Msa0171930:CDS
ACCAAACCATGAAACGACCT+AGG 0.676899 1_4:+56787369 None:intergenic
GAATGCATTAAAGCCTAAGG+CGG 0.680846 1_4:-56781586 Msa0171930:CDS
CTTCCCGACACAATGCCCGA+AGG 0.685812 1_4:+56783108 None:intergenic
TATACCTTAGCAGATGCTTG+GGG 0.690390 1_4:-56780565 Msa0171930:CDS
GGGTGATTTCTGCTAAACAG+GGG 0.701939 1_4:-56779021 Msa0171930:CDS
GTAATATTATAACCTTCATG+CGG 0.705297 1_4:-56778960 Msa0171930:exon
ATCTGAAACTGAGATCCCCG+TGG 0.712322 1_4:+56779057 None:intergenic
TTCTTGCTTTCTGAACACGC+TGG 0.712889 1_4:+56781481 None:intergenic
TGGCAGACTTGGAGACCACG+GGG 0.745351 1_4:-56779072 Msa0171930:CDS
AAACTTCATCAGTAGCCCGG+AGG 0.754800 1_4:+56786247 None:intergenic
ACAAAGAAAGAGGATCTCCG+TGG 0.767708 1_4:+56783132 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATGATTTTATTTC+CGG - chr1_4:56781630-56781649 Msa0171930:CDS 10.0%
!!! GGTTATTTTATTATTTATTA+TGG - chr1_4:56783968-56783987 Msa0171930:intron 10.0%
!! ATTATAATAATTTCAATTTG+GGG + chr1_4:56784063-56784082 None:intergenic 10.0%
!! CATTATAATAATTTCAATTT+GGG + chr1_4:56784064-56784083 None:intergenic 10.0%
!! TCATTATAATAATTTCAATT+TGG + chr1_4:56784065-56784084 None:intergenic 10.0%
!! ATCAATATAATAATATGTAT+TGG + chr1_4:56784468-56784487 None:intergenic 10.0%
!! AAAGATATCAAAAAATTTAT+TGG + chr1_4:56787193-56787212 None:intergenic 10.0%
!! ATTAATAAATATTATGCAGA+TGG - chr1_4:56779784-56779803 Msa0171930:intron 15.0%
!! TTTCATATCACAATAAAAAT+GGG - chr1_4:56780345-56780364 Msa0171930:intron 15.0%
!! ATACAATGTTAAAAACAATA+CGG + chr1_4:56780464-56780483 None:intergenic 15.0%
!!! TAGCTTTTTTACTTTTAAAA+TGG - chr1_4:56780527-56780546 Msa0171930:CDS 15.0%
!!! AGCTTTTTTACTTTTAAAAT+GGG - chr1_4:56780528-56780547 Msa0171930:CDS 15.0%
!! TAATATTCTGTAGAAAATTT+AGG - chr1_4:56783392-56783411 Msa0171930:intron 15.0%
!! AATATTCTGTAGAAAATTTA+GGG - chr1_4:56783393-56783412 Msa0171930:intron 15.0%
!! ACAAATAATTTACATTACTA+TGG - chr1_4:56783605-56783624 Msa0171930:intron 15.0%
!!! ATACTTTTATTTCTTATTCT+TGG - chr1_4:56784024-56784043 Msa0171930:intron 15.0%
!! TAAAATAACAATTATTAGGT+AGG + chr1_4:56784168-56784187 None:intergenic 15.0%
!! AAGGTAAAATAACAATTATT+AGG + chr1_4:56784172-56784191 None:intergenic 15.0%
!!! ATTTTCAAGCTTTTTTATTT+TGG - chr1_4:56784368-56784387 Msa0171930:intron 15.0%
!! TTATATATTAAAGATCAAGA+TGG + chr1_4:56785051-56785070 None:intergenic 15.0%
!! TGAAATATCATAAAACTAAA+GGG - chr1_4:56786219-56786238 Msa0171930:CDS 15.0%
!!! TATTTTCATCTTTTTTTTAC+TGG + chr1_4:56786364-56786383 None:intergenic 15.0%
!! TAATTGAGATATTCATAATT+TGG - chr1_4:56786939-56786958 Msa0171930:intron 15.0%
!! TAAAAATAGAAATATTGCAT+TGG + chr1_4:56787772-56787791 None:intergenic 15.0%
!!! ATTTCTATTTTGAGTATGTA+TGG - chr1_4:56779454-56779473 Msa0171930:intron 20.0%
!! AATTCCTCAATAAATAGATT+GGG + chr1_4:56780314-56780333 None:intergenic 20.0%
!! GTTTCATATCACAATAAAAA+TGG - chr1_4:56780344-56780363 Msa0171930:intron 20.0%
!!! GCTTTTTTACTTTTAAAATG+GGG - chr1_4:56780529-56780548 Msa0171930:CDS 20.0%
!! TTACTTCCTTCAAATTAAAT+AGG - chr1_4:56780915-56780934 Msa0171930:CDS 20.0%
!! GTATTTAGAAAAAAGATGTT+TGG - chr1_4:56781421-56781440 Msa0171930:CDS 20.0%
!! GTTAACATTATAATATTCCA+AGG - chr1_4:56781443-56781462 Msa0171930:CDS 20.0%
!!! TATTATATTCCCCATTTTTA+AGG + chr1_4:56781471-56781490 None:intergenic 20.0%
!! TTAAAAATGGGGAATATAAT+AGG - chr1_4:56781470-56781489 Msa0171930:CDS 20.0%
!!! AGTTTACTAAATTTTATTCC+CGG + chr1_4:56781589-56781608 None:intergenic 20.0%
!! ATTCAATTTAAGAAATCCAA+TGG + chr1_4:56781992-56782011 None:intergenic 20.0%
!! TTCTTAAATTGAATATTTCC+TGG - chr1_4:56781998-56782017 Msa0171930:intron 20.0%
!! TGAATTCATTAGTATAGATT+TGG - chr1_4:56782226-56782245 Msa0171930:intron 20.0%
!! AGCAGATAAATTGATATAAA+AGG - chr1_4:56782703-56782722 Msa0171930:intron 20.0%
!!! GTAAATTAAAGTATTCATAG+TGG + chr1_4:56782812-56782831 None:intergenic 20.0%
!!! CAAAAACTTTTTTCACAAAA+GGG + chr1_4:56782927-56782946 None:intergenic 20.0%
!! ATATTCTGTAGAAAATTTAG+GGG - chr1_4:56783394-56783413 Msa0171930:intron 20.0%
!! ATTACTATGGATAATAATCA+TGG - chr1_4:56783618-56783637 Msa0171930:intron 20.0%
!!! GAATTTTATAGTATAACACT+GGG + chr1_4:56784259-56784278 None:intergenic 20.0%
!!! AGAATTTTATAGTATAACAC+TGG + chr1_4:56784260-56784279 None:intergenic 20.0%
!!! TTTCTAGCTAAAAAAATTTC+AGG + chr1_4:56784348-56784367 None:intergenic 20.0%
!! GTCTAGTATATATTAGTTAA+GGG - chr1_4:56784432-56784451 Msa0171930:intron 20.0%
!! TCTAGTATATATTAGTTAAG+GGG - chr1_4:56784433-56784452 Msa0171930:intron 20.0%
!! ATTTATATATTCAAACCCAA+TGG - chr1_4:56784623-56784642 Msa0171930:intron 20.0%
!! ATAATGCCTAAACTTAAATA+TGG - chr1_4:56785067-56785086 Msa0171930:intron 20.0%
!! AAGATTATATTGATGTTGTA+GGG - chr1_4:56785250-56785269 Msa0171930:intron 20.0%
!! AAAAAAAAAAAAACTAGTCC+AGG + chr1_4:56785963-56785982 None:intergenic 20.0%
!!! CAGTTTTTATTTTATTCACA+TGG + chr1_4:56786080-56786099 None:intergenic 20.0%
!!! AAACTGTTTAAACTTTTTTG+TGG - chr1_4:56786094-56786113 Msa0171930:intron 20.0%
!! CTGAAATATCATAAAACTAA+AGG - chr1_4:56786218-56786237 Msa0171930:CDS 20.0%
!! ATAAGAAATACCAAATGTAA+TGG + chr1_4:56786328-56786347 None:intergenic 20.0%
!! TGCTATAATTAAGAAATAGT+CGG - chr1_4:56786572-56786591 Msa0171930:CDS 20.0%
!! GAATTTATAAATACTCTAAG+TGG - chr1_4:56786776-56786795 Msa0171930:intron 20.0%
!!! TATCAAAAAATTTATTGGCT+GGG + chr1_4:56787188-56787207 None:intergenic 20.0%
!! ATATCAAAAAATTTATTGGC+TGG + chr1_4:56787189-56787208 None:intergenic 20.0%
!!! CTTATTTTCATAAGCTCTAT+AGG - chr1_4:56779184-56779203 Msa0171930:intron 25.0%
! CTATAGGATAGTTTATGAAA+TGG - chr1_4:56779200-56779219 Msa0171930:intron 25.0%
! GTGTCAAACATATCTTATAT+TGG + chr1_4:56779234-56779253 None:intergenic 25.0%
! GAACTTATACAAACATCTTA+TGG - chr1_4:56779338-56779357 Msa0171930:CDS 25.0%
! CTTATTTACATAAGCTCTTT+AGG - chr1_4:56779580-56779599 Msa0171930:intron 25.0%
!! TTATGTTGTTTATCCAAACA+AGG - chr1_4:56779750-56779769 Msa0171930:intron 25.0%
!! ATTCTATTTAAGTTAGTGAC+TGG - chr1_4:56780028-56780047 Msa0171930:intron 25.0%
! GAATTCCTCAATAAATAGAT+TGG + chr1_4:56780315-56780334 None:intergenic 25.0%
! CTATTTATTGAGGAATTCTA+AGG - chr1_4:56780317-56780336 Msa0171930:intron 25.0%
! TGTAGAAAGTAGAAACTATT+AGG - chr1_4:56780368-56780387 Msa0171930:intron 25.0%
! GCGTATCAGTTTATTTAAAA+TGG + chr1_4:56780413-56780432 None:intergenic 25.0%
! TGTGACTGTAAAAAATGTTA+AGG - chr1_4:56780726-56780745 Msa0171930:intron 25.0%
! ACTTGAAAGAACATGTAAAA+GGG + chr1_4:56780784-56780803 None:intergenic 25.0%
! TTTCAAATTTCAATTAGCTG+TGG - chr1_4:56780827-56780846 Msa0171930:intron 25.0%
! AATTGCGTATGAATATTCTT+CGG - chr1_4:56781080-56781099 Msa0171930:CDS 25.0%
! TGATACAGAAACATACAATT+GGG - chr1_4:56781206-56781225 Msa0171930:CDS 25.0%
! ATGACAATCTTTGTTCTTTA+AGG - chr1_4:56781318-56781337 Msa0171930:intron 25.0%
! TGACAATCTTTGTTCTTTAA+GGG - chr1_4:56781319-56781338 Msa0171930:intron 25.0%
! AGTGTAACAAATTTATTCCT+AGG - chr1_4:56781355-56781374 Msa0171930:intron 25.0%
! ATTCCTTGGAATATAAAGAT+AGG - chr1_4:56781384-56781403 Msa0171930:intron 25.0%
! ATTCCTATCTTTATATTCCA+AGG + chr1_4:56781390-56781409 None:intergenic 25.0%
!! AAGATAGGAATTTTATTCCA+AGG - chr1_4:56781399-56781418 Msa0171930:intron 25.0%
!!! CATCTTTTTTCTAAATACCT+TGG + chr1_4:56781419-56781438 None:intergenic 25.0%
!! AAAAGTTTTCCCAAAGAAAA+TGG + chr1_4:56781543-56781562 None:intergenic 25.0%
!! GTTTACTAAATTTTATTCCC+GGG + chr1_4:56781588-56781607 None:intergenic 25.0%
! AGAACAATTCTAAACTGTTA+GGG + chr1_4:56781686-56781705 None:intergenic 25.0%
! AAGAACAATTCTAAACTGTT+AGG + chr1_4:56781687-56781706 None:intergenic 25.0%
! AAATAATGTATCTTACGCAT+GGG + chr1_4:56782153-56782172 None:intergenic 25.0%
! TAAATAATGTATCTTACGCA+TGG + chr1_4:56782154-56782173 None:intergenic 25.0%
! CAACATTCAATATGCTAAAA+TGG + chr1_4:56782199-56782218 None:intergenic 25.0%
!!! TATAGATTTGGCCTTTTTAT+TGG - chr1_4:56782238-56782257 Msa0171930:intron 25.0%
! AATGAATACAGCCAATAAAA+AGG + chr1_4:56782252-56782271 None:intergenic 25.0%
! CTGTATTCATTAGTATTTGT+AGG - chr1_4:56782261-56782280 Msa0171930:intron 25.0%
! AAAGAGGGAATATAAACTTA+GGG - chr1_4:56782415-56782434 Msa0171930:intron 25.0%
! TATAAAAGATATCAGCAATG+AGG - chr1_4:56782458-56782477 Msa0171930:intron 25.0%
!!! GCAAAAACTTTTTTCACAAA+AGG + chr1_4:56782928-56782947 None:intergenic 25.0%
! TGAAATCTATACATTAAAGC+AGG + chr1_4:56783062-56783081 None:intergenic 25.0%
!! AGCTGAAAGAATTATTTTCA+GGG - chr1_4:56783455-56783474 Msa0171930:intron 25.0%
! TGTAAGAAAATAGATTCTCA+AGG + chr1_4:56783564-56783583 None:intergenic 25.0%
! TATAGTAAAAAAATGTGTGC+CGG + chr1_4:56783737-56783756 None:intergenic 25.0%
!!! CACATTTTTTTACTATAGGT+AGG - chr1_4:56783740-56783759 Msa0171930:intron 25.0%
! ATGAGATTGATTATATTGCT+AGG - chr1_4:56783905-56783924 Msa0171930:intron 25.0%
!!! AGTAGTTGCTATTTTGTATT+TGG - chr1_4:56783947-56783966 Msa0171930:intron 25.0%
!! TTTATTTCTTATTCTTGGTC+AGG - chr1_4:56784029-56784048 Msa0171930:intron 25.0%
!!! ATTGTTATTTTACCTTGTGA+TGG - chr1_4:56784176-56784195 Msa0171930:intron 25.0%
! TAAAATTCTGTACCCAATAT+TGG - chr1_4:56784271-56784290 Msa0171930:CDS 25.0%
! TTTGCTAATAGTCCAATATT+GGG + chr1_4:56784286-56784305 None:intergenic 25.0%
!! TTTTGCTAATAGTCCAATAT+TGG + chr1_4:56784287-56784306 None:intergenic 25.0%
! ATATTGGACTATTAGCAAAA+TGG - chr1_4:56784287-56784306 Msa0171930:CDS 25.0%
! TATTGGACTATTAGCAAAAT+GGG - chr1_4:56784288-56784307 Msa0171930:CDS 25.0%
! GGTCTAGTATATATTAGTTA+AGG - chr1_4:56784431-56784450 Msa0171930:intron 25.0%
! TGGCTAAAGAAAATCATAAA+GGG - chr1_4:56784780-56784799 Msa0171930:intron 25.0%
! AGATGGCATACAAAAAAAAA+CGG + chr1_4:56785034-56785053 None:intergenic 25.0%
! AATATAATCTTGAACATCAG+GGG + chr1_4:56785241-56785260 None:intergenic 25.0%
! CAATATAATCTTGAACATCA+GGG + chr1_4:56785242-56785261 None:intergenic 25.0%
! TCAATATAATCTTGAACATC+AGG + chr1_4:56785243-56785262 None:intergenic 25.0%
! CAAGATTATATTGATGTTGT+AGG - chr1_4:56785249-56785268 Msa0171930:intron 25.0%
! AGATTATATTGATGTTGTAG+GGG - chr1_4:56785251-56785270 Msa0171930:intron 25.0%
!!! AATCAGGATGATTTGTTTTT+TGG - chr1_4:56785577-56785596 Msa0171930:intron 25.0%
!! TTTGAAATGATTAAATGCCT+TGG - chr1_4:56786013-56786032 Msa0171930:intron 25.0%
! ATATCAGAATTTAAGAACCA+AGG + chr1_4:56786033-56786052 None:intergenic 25.0%
!!! TTTATTTTATTCACATGGAG+AGG + chr1_4:56786075-56786094 None:intergenic 25.0%
!!! GAATGAATAAACTCTGAAAT+CGG + chr1_4:56786190-56786209 None:intergenic 25.0%
! TATATTGTGAGAAAGATTCA+TGG - chr1_4:56786255-56786274 Msa0171930:CDS 25.0%
! TATCACTACTATCTATGTAT+TGG - chr1_4:56786281-56786300 Msa0171930:CDS 25.0%
! TATAGGATATCCATTACATT+TGG - chr1_4:56786315-56786334 Msa0171930:CDS 25.0%
! TCCTATTACACATTAATTCA+CGG + chr1_4:56786507-56786526 None:intergenic 25.0%
! ACGTGTAAAAAACTAAAAGT+TGG - chr1_4:56786611-56786630 Msa0171930:intron 25.0%
! AAAAAACTAAAAGTTGGCTA+TGG - chr1_4:56786617-56786636 Msa0171930:intron 25.0%
! GTAATATTATAACCTTCATG+CGG - chr1_4:56787438-56787457 Msa0171930:CDS 25.0%
! CAAATAAAAGCGAAAAACTA+GGG + chr1_4:56787633-56787652 None:intergenic 25.0%
! TCAAATAAAAGCGAAAAACT+AGG + chr1_4:56787634-56787653 None:intergenic 25.0%
!! ATTTGACTTTGTTGTGAATT+TGG - chr1_4:56787648-56787667 Msa0171930:exon 25.0%
! AGAAATATTGCATTGGAAAA+TGG + chr1_4:56787765-56787784 None:intergenic 25.0%
! AATGCATGTGTAATGAGTTT+TGG + chr1_4:56778743-56778762 None:intergenic 30.0%
TCATGTTACAGTTACAGTTA+CGG - chr1_4:56778762-56778781 Msa0171930:three_prime_UTR 30.0%
!! TTAAGCGGTTTAATTTGAAG+GGG + chr1_4:56778800-56778819 None:intergenic 30.0%
!! GTTAAGCGGTTTAATTTGAA+GGG + chr1_4:56778801-56778820 None:intergenic 30.0%
!! AGTTAAGCGGTTTAATTTGA+AGG + chr1_4:56778802-56778821 None:intergenic 30.0%
ATACATAACTTGAGAAACTC+CGG + chr1_4:56778979-56778998 None:intergenic 30.0%
AGTGAATTTAAACATTACCG+CGG + chr1_4:56779087-56779106 None:intergenic 30.0%
CGTAAATACTTGAGACTATT+TGG - chr1_4:56779313-56779332 Msa0171930:CDS 30.0%
!! CTTATTTCTATAAGCTCTCT+AGG - chr1_4:56779383-56779402 Msa0171930:CDS 30.0%
GCAACAAAAGTTTCATGAAT+CGG + chr1_4:56779845-56779864 None:intergenic 30.0%
! TCATGAAACTTTTGTTGCAT+TGG - chr1_4:56779847-56779866 Msa0171930:intron 30.0%
TCTAAAGGTCATTCAACTAA+AGG - chr1_4:56779884-56779903 Msa0171930:intron 30.0%
ACTAAAGGTTTAGAGATACT+TGG - chr1_4:56779899-56779918 Msa0171930:intron 30.0%
ATTATGATATTCGTCATGCT+TGG - chr1_4:56779939-56779958 Msa0171930:intron 30.0%
CATGCTTGGATAATTCTTAT+TGG - chr1_4:56779953-56779972 Msa0171930:intron 30.0%
!! TTAAGTTAGTGACTGGTTTA+TGG - chr1_4:56780035-56780054 Msa0171930:intron 30.0%
! TGCTAATAAAGTGTTCTTGA+AGG - chr1_4:56780115-56780134 Msa0171930:intron 30.0%
! GCTAATAAAGTGTTCTTGAA+GGG - chr1_4:56780116-56780135 Msa0171930:intron 30.0%
AGTTTATGATCTCCTAATTG+AGG - chr1_4:56780169-56780188 Msa0171930:intron 30.0%
CAGAAAGTAGGCAATTAAAA+TGG + chr1_4:56780277-56780296 None:intergenic 30.0%
CTTTCCCAATCTATTTATTG+AGG - chr1_4:56780307-56780326 Msa0171930:intron 30.0%
CACTTGAAAGAACATGTAAA+AGG + chr1_4:56780785-56780804 None:intergenic 30.0%
AAACAAATTATGAGTGTGCT+TGG - chr1_4:56780852-56780871 Msa0171930:intron 30.0%
!! AGGTAGCCTATTTAATTTGA+AGG + chr1_4:56780924-56780943 None:intergenic 30.0%
! AATGTTGTAAAGGCTATTTC+AGG + chr1_4:56780955-56780974 None:intergenic 30.0%
CATGTTCTCAAATGTTGTAA+AGG + chr1_4:56780965-56780984 None:intergenic 30.0%
CTTTACAACATTTGAGAACA+TGG - chr1_4:56780963-56780982 Msa0171930:CDS 30.0%
ACATTTGAGAACATGGAATA+TGG - chr1_4:56780970-56780989 Msa0171930:CDS 30.0%
AGCAATAAGAAATAGAGAAG+TGG + chr1_4:56781010-56781029 None:intergenic 30.0%
ATTGCGTATGAATATTCTTC+GGG - chr1_4:56781081-56781100 Msa0171930:CDS 30.0%
GGCTATATCAATCTAGAAAA+GGG + chr1_4:56781116-56781135 None:intergenic 30.0%
AGGCTATATCAATCTAGAAA+AGG + chr1_4:56781117-56781136 None:intergenic 30.0%
! GTAGTTCATAATGGAGAAAT+AGG + chr1_4:56781137-56781156 None:intergenic 30.0%
! CAATTGTATGTTTCTGTATC+AGG + chr1_4:56781207-56781226 None:intergenic 30.0%
CTGATACAGAAACATACAAT+TGG - chr1_4:56781205-56781224 Msa0171930:CDS 30.0%
ATTCCAAGGAACCTTAAAAA+TGG - chr1_4:56781457-56781476 Msa0171930:CDS 30.0%
TTCCAAGGAACCTTAAAAAT+GGG - chr1_4:56781458-56781477 Msa0171930:CDS 30.0%
! TAATTTTATTCCCATCTCCA+TGG - chr1_4:56781503-56781522 Msa0171930:CDS 30.0%
! AATTTTATTCCCATCTCCAT+GGG - chr1_4:56781504-56781523 Msa0171930:CDS 30.0%
AGTAAACTTGTAACAAACGT+AGG - chr1_4:56781601-56781620 Msa0171930:CDS 30.0%
CAAGTTATATCTGTAGATTC+CGG + chr1_4:56781652-56781671 None:intergenic 30.0%
AGTGTTGTGAATCTGAAAAA+TGG - chr1_4:56781809-56781828 Msa0171930:CDS 30.0%
GAATATTTCCTGGATTGAAT+TGG - chr1_4:56782008-56782027 Msa0171930:intron 30.0%
! TAATCAAACTTGTTTCCGTT+TGG - chr1_4:56782049-56782068 Msa0171930:intron 30.0%
TTCAATATGCTAAAATGGTC+AGG + chr1_4:56782194-56782213 None:intergenic 30.0%
CAAAGAGGGAATATAAACTT+AGG - chr1_4:56782414-56782433 Msa0171930:intron 30.0%
! CTGATATCTTTTATACTCTC+TGG + chr1_4:56782453-56782472 None:intergenic 30.0%
AGACTGATATTCAATAGCTT+TGG + chr1_4:56782495-56782514 None:intergenic 30.0%
!! AGCTTCACTCAATGTTTTAA+TGG + chr1_4:56782526-56782545 None:intergenic 30.0%
!! ATTTTGCTGAATAGTCTTAG+TGG + chr1_4:56782682-56782701 None:intergenic 30.0%
ATTTAAATTCAGAAGCCTTG+TGG - chr1_4:56783033-56783052 Msa0171930:intron 30.0%
!!! CTTCAAAGTTTTTAAGTGCT+CGG + chr1_4:56783215-56783234 None:intergenic 30.0%
GAGCACTTAAAAACTTTGAA+GGG - chr1_4:56783214-56783233 Msa0171930:CDS 30.0%
! AGCACTTAAAAACTTTGAAG+GGG - chr1_4:56783215-56783234 Msa0171930:CDS 30.0%
ACGAAAATTCTACATATGGA+TGG - chr1_4:56783240-56783259 Msa0171930:CDS 30.0%
CGAAAATTCTACATATGGAT+GGG - chr1_4:56783241-56783260 Msa0171930:CDS 30.0%
! CAGCTGAAAGAATTATTTTC+AGG - chr1_4:56783454-56783473 Msa0171930:intron 30.0%
GGTATTACTTAGTAGTTGAA+GGG - chr1_4:56783476-56783495 Msa0171930:intron 30.0%
ATGGTAAATGTAATTGTCTG+TGG - chr1_4:56783637-56783656 Msa0171930:intron 30.0%
TATTTACGACCAAAATTGTC+TGG - chr1_4:56783694-56783713 Msa0171930:intron 30.0%
ATTTACGACCAAAATTGTCT+GGG - chr1_4:56783695-56783714 Msa0171930:intron 30.0%
!!! GGCACACATTTTTTTACTAT+AGG - chr1_4:56783736-56783755 Msa0171930:intron 30.0%
!!! GTCTTTTTTAGTTTTGATCG+AGG - chr1_4:56784093-56784112 Msa0171930:intron 30.0%
AAACACAATTTACCATCACA+AGG + chr1_4:56784191-56784210 None:intergenic 30.0%
CCTGCATTAAATAGAAAGAA+AGG + chr1_4:56784397-56784416 None:intergenic 30.0%
CCTTTCTTTCTATTTAATGC+AGG - chr1_4:56784394-56784413 Msa0171930:intron 30.0%
TGAAACAGATATGTTGAAGA+AGG - chr1_4:56784528-56784547 Msa0171930:intron 30.0%
TATATAAATCCATCAGCATC+AGG + chr1_4:56784612-56784631 None:intergenic 30.0%
TATGAAGGAATTGTAGCTTT+AGG - chr1_4:56784717-56784736 Msa0171930:intron 30.0%
! ATGAAGGAATTGTAGCTTTA+GGG - chr1_4:56784718-56784737 Msa0171930:intron 30.0%
CTCAATCACTCTAACATAAT+CGG + chr1_4:56784760-56784779 None:intergenic 30.0%
ATTATGTTAGAGTGATTGAG+TGG - chr1_4:56784760-56784779 Msa0171930:intron 30.0%
GTGGCTAAAGAAAATCATAA+AGG - chr1_4:56784779-56784798 Msa0171930:intron 30.0%
GGCTAAAGAAAATCATAAAG+GGG - chr1_4:56784781-56784800 Msa0171930:intron 30.0%
AATGCTTGTGAATGAATTGA+AGG - chr1_4:56784842-56784861 Msa0171930:intron 30.0%
AGAAGAATAAATCAATCTCG+TGG - chr1_4:56784936-56784955 Msa0171930:intron 30.0%
TACAAAAAAAAACGGCATTC+AGG + chr1_4:56785026-56785045 None:intergenic 30.0%
AAAAAACCCCTTCAAATGAT+TGG - chr1_4:56785405-56785424 Msa0171930:intron 30.0%
!! TCTTCTTGACTTTTTAGAAG+TGG + chr1_4:56785466-56785485 None:intergenic 30.0%
AAAGAAAAAGAAGACACCAA+GGG + chr1_4:56785526-56785545 None:intergenic 30.0%
TAAAGAAAAAGAAGACACCA+AGG + chr1_4:56785527-56785546 None:intergenic 30.0%
! CTTTTTCTTTACACATGTTC+TGG - chr1_4:56785536-56785555 Msa0171930:intron 30.0%
!!! ATTTGTTTTTTGGACCTTGA+GGG - chr1_4:56785587-56785606 Msa0171930:intron 30.0%
ATTTCAAACCAATTCAACAG+AGG + chr1_4:56786001-56786020 None:intergenic 30.0%
!! ACTATCTATGTATTGGTTAG+TGG - chr1_4:56786288-56786307 Msa0171930:CDS 30.0%
! TATTGGTTAGTGGCATATAT+AGG - chr1_4:56786298-56786317 Msa0171930:CDS 30.0%
!! TATTGTTTTACTCCAACCTT+TGG - chr1_4:56786423-56786442 Msa0171930:intron 30.0%
CCTATTACACATTAATTCAC+GGG + chr1_4:56786506-56786525 None:intergenic 30.0%
!! TGAAGATATGCTTGTTATAG+TGG - chr1_4:56786537-56786556 Msa0171930:CDS 30.0%
TATGGCGTAATGATTAAGTA+TGG - chr1_4:56786635-56786654 Msa0171930:intron 30.0%
GATCAAGAAGGAAATCTAAA+AGG - chr1_4:56786671-56786690 Msa0171930:intron 30.0%
ATAATTTGGCTGTATTACTC+AGG - chr1_4:56786953-56786972 Msa0171930:intron 30.0%
TATTACTCAGGTCATACAAT+TGG - chr1_4:56786965-56786984 Msa0171930:intron 30.0%
ATTACTCAGGTCATACAATT+GGG - chr1_4:56786966-56786985 Msa0171930:intron 30.0%
! ATAGTCTTGGCTATAAGTTT+GGG - chr1_4:56787084-56787103 Msa0171930:intron 30.0%
TATGATAAGACTCTTGTAGT+TGG - chr1_4:56787127-56787146 Msa0171930:intron 30.0%
! AAAAATTTATTGGCTGGGTT+GGG + chr1_4:56787183-56787202 None:intergenic 30.0%
! AAAAAATTTATTGGCTGGGT+TGG + chr1_4:56787184-56787203 None:intergenic 30.0%
ATTGACAATCCTTCAAATGA+TGG - chr1_4:56787400-56787419 Msa0171930:CDS 30.0%
TTAATGTATAGTATCAGTCC+AGG - chr1_4:56787562-56787581 Msa0171930:CDS 30.0%
TTCCACACATATAAGTTTAG+TGG + chr1_4:56787687-56787706 None:intergenic 30.0%
TAATTTGAAGGGGATGTAAG+TGG + chr1_4:56778790-56778809 None:intergenic 35.0%
TTTCACTTGCTTCTTCTTTC+TGG + chr1_4:56778874-56778893 None:intergenic 35.0%
ATGTATGATATGATTGCTGC+TGG - chr1_4:56778993-56779012 Msa0171930:CDS 35.0%
! GTTGTTTCCTATGCTCTTAA+TGG - chr1_4:56779050-56779069 Msa0171930:CDS 35.0%
AACAATCTCACATGTGCTTA+CGG + chr1_4:56779506-56779525 None:intergenic 35.0%
TAAGCACATGTGAGATTGTT+TGG - chr1_4:56779506-56779525 Msa0171930:intron 35.0%
! ATCAATAACTACGCCTTGTT+TGG + chr1_4:56779766-56779785 None:intergenic 35.0%
! TTGCATTGGTGAGATTGTTT+GGG - chr1_4:56779861-56779880 Msa0171930:intron 35.0%
TTTAGAGATACTTGGAGCTA+TGG - chr1_4:56779907-56779926 Msa0171930:intron 35.0%
TGTTATCCTATGTGATGTAG+AGG - chr1_4:56780064-56780083 Msa0171930:intron 35.0%
CTTTGCAATCTTCCTCAATT+AGG + chr1_4:56780184-56780203 None:intergenic 35.0%
TTTGGAAATTTCGTACGAGA+TGG - chr1_4:56780223-56780242 Msa0171930:intron 35.0%
AAATGGGGCTGCATATATTT+AGG - chr1_4:56780544-56780563 Msa0171930:CDS 35.0%
!! TTTGGTTGGTGTTTTCAGTA+TGG + chr1_4:56780680-56780699 None:intergenic 35.0%
AAAACATAACACAAACAGCC+AGG + chr1_4:56780884-56780903 None:intergenic 35.0%
CAAATTAAATAGGCTACCTG+CGG - chr1_4:56780925-56780944 Msa0171930:CDS 35.0%
TCCATTATGAACTACATCTG+AGG - chr1_4:56781142-56781161 Msa0171930:CDS 35.0%
ACCTCAGATGTAGTTCATAA+TGG + chr1_4:56781146-56781165 None:intergenic 35.0%
AACTAACCTGTCATAAGAGT+CGG + chr1_4:56781253-56781272 None:intergenic 35.0%
! TGTTGCCTTTTGCTTATTGT+TGG + chr1_4:56781291-56781310 None:intergenic 35.0%
TTCCTAGGAATAACATTCCT+TGG - chr1_4:56781370-56781389 Msa0171930:intron 35.0%
TTCCAAGGAATGTTATTCCT+AGG + chr1_4:56781375-56781394 None:intergenic 35.0%
TCCAAGGAACCTTAAAAATG+GGG - chr1_4:56781459-56781478 Msa0171930:CDS 35.0%
! TTTAGTCCCACCATTTTCTT+TGG - chr1_4:56781530-56781549 Msa0171930:CDS 35.0%
! TTAGTCCCACCATTTTCTTT+GGG - chr1_4:56781531-56781550 Msa0171930:CDS 35.0%
! GTTTTCCCAAAGAAAATGGT+GGG + chr1_4:56781539-56781558 None:intergenic 35.0%
! AGTTTTCCCAAAGAAAATGG+TGG + chr1_4:56781540-56781559 None:intergenic 35.0%
ATTAAACTATGCCAGGTGAT+AGG + chr1_4:56781780-56781799 None:intergenic 35.0%
CTCAACTATTAAACTATGCC+AGG + chr1_4:56781787-56781806 None:intergenic 35.0%
CTGGCATAGTTTAATAGTTG+AGG - chr1_4:56781785-56781804 Msa0171930:CDS 35.0%
!! TGGTTTGTTTAAATACCGCT+AGG - chr1_4:56781922-56781941 Msa0171930:intron 35.0%
CAACATATCCAATTCAATCC+AGG + chr1_4:56782019-56782038 None:intergenic 35.0%
AAGAAGAAACGTCATCAAAG+AGG - chr1_4:56782399-56782418 Msa0171930:intron 35.0%
AGAAGAAACGTCATCAAAGA+GGG - chr1_4:56782400-56782419 Msa0171930:intron 35.0%
AGGGAATATAAACTTAGGGA+AGG - chr1_4:56782419-56782438 Msa0171930:intron 35.0%
ATTGAGTGAAGCTACAATAG+AGG - chr1_4:56782533-56782552 Msa0171930:CDS 35.0%
GGGCTTAAGGTTCATATTTA+TGG + chr1_4:56782559-56782578 None:intergenic 35.0%
TCTTAGCACATACAGTTGTT+GGG + chr1_4:56782579-56782598 None:intergenic 35.0%
ATCATAATCTGTGTGAGTGT+TGG - chr1_4:56782974-56782993 Msa0171930:intron 35.0%
CAAAGTAATCTCCTTGTAGA+AGG + chr1_4:56783094-56783113 None:intergenic 35.0%
CGAGCACTTAAAAACTTTGA+AGG - chr1_4:56783213-56783232 Msa0171930:CDS 35.0%
! GCACTTAAAAACTTTGAAGG+GGG - chr1_4:56783216-56783235 Msa0171930:CDS 35.0%
GGGAACGAAAATTCTACATA+TGG - chr1_4:56783236-56783255 Msa0171930:CDS 35.0%
ATCCTCTTTCTTTGTACCTT+CGG - chr1_4:56783274-56783293 Msa0171930:intron 35.0%
TAGAAAATTTAGGGGATCTG+AGG - chr1_4:56783402-56783421 Msa0171930:intron 35.0%
GGGTATTACTTAGTAGTTGA+AGG - chr1_4:56783475-56783494 Msa0171930:intron 35.0%
CATGATTCATCATGTGTAGA+AGG - chr1_4:56783512-56783531 Msa0171930:intron 35.0%
! CTTACATTTTGTTGCTCTTG+TGG - chr1_4:56783578-56783597 Msa0171930:intron 35.0%
!! AAAGCATTCCCAGACAATTT+TGG + chr1_4:56783706-56783725 None:intergenic 35.0%
TGATCTTGAGCAGAAAATAC+CGG - chr1_4:56783830-56783849 Msa0171930:intron 35.0%
AACATTAGTGACACTACTCT+TGG + chr1_4:56784145-56784164 None:intergenic 35.0%
TCAGACCATTACTTGGAATT+TGG + chr1_4:56784318-56784337 None:intergenic 35.0%
AGTTTCTTCAGACCATTACT+TGG + chr1_4:56784325-56784344 None:intergenic 35.0%
AACAGATATGTTGAAGAAGG+TGG - chr1_4:56784531-56784550 Msa0171930:intron 35.0%
ACTTCTTCAGAAGCTTCTTA+TGG + chr1_4:56784692-56784711 None:intergenic 35.0%
!! TGAAGGAATTGTAGCTTTAG+GGG - chr1_4:56784719-56784738 Msa0171930:intron 35.0%
ACAGAATGCATTAAAGCCTA+AGG - chr1_4:56784809-56784828 Msa0171930:intron 35.0%
GAATAAATCAATCTCGTGGT+CGG - chr1_4:56784940-56784959 Msa0171930:intron 35.0%
! CACGGACCATATTTAAGTTT+AGG + chr1_4:56785076-56785095 None:intergenic 35.0%
AGGAAGGAAATACAGAGTAT+TGG - chr1_4:56785145-56785164 Msa0171930:intron 35.0%
TTCTTAGGAGAAGGCTTAAA+TGG - chr1_4:56785177-56785196 Msa0171930:CDS 35.0%
GAAGGCTTAAATGGTGATAA+TGG - chr1_4:56785186-56785205 Msa0171930:CDS 35.0%
!! TGGTGATAATGGAAATGCAA+TGG - chr1_4:56785197-56785216 Msa0171930:CDS 35.0%
AATGGAAATGCAATGGATGA+AGG - chr1_4:56785204-56785223 Msa0171930:CDS 35.0%
TGTAGAGAGGATAAAGGAAA+AGG - chr1_4:56785371-56785390 Msa0171930:intron 35.0%
CAAGAAGAAGAAGATCAAGA+CGG - chr1_4:56785478-56785497 Msa0171930:intron 35.0%
AAGAAGATCAAGACGGAATA+TGG - chr1_4:56785485-56785504 Msa0171930:intron 35.0%
TTCTTTACACATGTTCTGGT+TGG - chr1_4:56785540-56785559 Msa0171930:intron 35.0%
!!! GATTTGTTTTTTGGACCTTG+AGG - chr1_4:56785586-56785605 Msa0171930:intron 35.0%
TATCGTGAAATTCAAGCTCA+AGG + chr1_4:56785644-56785663 None:intergenic 35.0%
! ACCTAAAGTTGTTTCCTTAC+AGG - chr1_4:56785721-56785740 Msa0171930:intron 35.0%
TCCTGTAAGGAAACAACTTT+AGG + chr1_4:56785725-56785744 None:intergenic 35.0%
CAAAGGAAACCAATCATCAT+CGG + chr1_4:56785753-56785772 None:intergenic 35.0%
GTTTCCTTTGGACATATTTG+AGG - chr1_4:56785763-56785782 Msa0171930:intron 35.0%
GGCAATAAAAGTTATGCAGA+AGG - chr1_4:56785925-56785944 Msa0171930:intron 35.0%
AAACTTCACTCAAACACTCA+CGG + chr1_4:56786131-56786150 None:intergenic 35.0%
! TAACTTTTTGCTCAGTCCAA+AGG + chr1_4:56786442-56786461 None:intergenic 35.0%
CCCGTGAATTAATGTGTAAT+AGG - chr1_4:56786503-56786522 Msa0171930:CDS 35.0%
! TAAGTATGGTGATAATGCAG+CGG - chr1_4:56786649-56786668 Msa0171930:intron 35.0%
AGATTACACTATGCTTGAAC+AGG + chr1_4:56786883-56786902 None:intergenic 35.0%
AGAATTGTCAAGAAAGCTGA+AGG + chr1_4:56787053-56787072 None:intergenic 35.0%
! CATAGTCTTGGCTATAAGTT+TGG - chr1_4:56787083-56787102 Msa0171930:intron 35.0%
! TACTGTTTTGCACGGAAAAA+AGG - chr1_4:56787464-56787483 Msa0171930:CDS 35.0%
! ACTGTTTTGCACGGAAAAAA+GGG - chr1_4:56787465-56787484 Msa0171930:CDS 35.0%
CACCACTAAACTTATATGTG+TGG - chr1_4:56787682-56787701 Msa0171930:five_prime_UTR 35.0%
AGTGATGAATTTGACTGACT+GGG + chr1_4:56787737-56787756 None:intergenic 35.0%
AAGTGATGAATTTGACTGAC+TGG + chr1_4:56787738-56787757 None:intergenic 35.0%
!! TCGTGTGTGTGTTGATGATA+AGG + chr1_4:56778654-56778673 None:intergenic 40.0%
TGTCGGGAGAAAAAACAAAG+TGG + chr1_4:56778677-56778696 None:intergenic 40.0%
ATAGTGTTCTGTTGAGTGTC+GGG + chr1_4:56778693-56778712 None:intergenic 40.0%
GATAGTGTTCTGTTGAGTGT+CGG + chr1_4:56778694-56778713 None:intergenic 40.0%
TGAGAGTTGAAAGAGTGAAG+TGG + chr1_4:56778718-56778737 None:intergenic 40.0%
CTTTACTTGAGAACAGTCTC+CGG - chr1_4:56778904-56778923 Msa0171930:three_prime_UTR 40.0%
! TTCATCGCCATTAAGAGCAT+AGG + chr1_4:56779060-56779079 None:intergenic 40.0%
AGCTTACTTGTGAGACTCTT+TGG - chr1_4:56779114-56779133 Msa0171930:CDS 40.0%
AGCTAGCTGAAAACAGCTTA+TGG + chr1_4:56779562-56779581 None:intergenic 40.0%
! TTATGCAGATGGATTCGTTG+AGG - chr1_4:56779795-56779814 Msa0171930:intron 40.0%
! GTTGCATTGGTGAGATTGTT+TGG - chr1_4:56779860-56779879 Msa0171930:intron 40.0%
GTGAGATTGTTTGGGTCTAA+AGG - chr1_4:56779869-56779888 Msa0171930:intron 40.0%
CAAGTTCCTCTACATCACAT+AGG + chr1_4:56780073-56780092 None:intergenic 40.0%
! GTGATGTAGAGGAACTTGTT+CGG - chr1_4:56780075-56780094 Msa0171930:intron 40.0%
ACTTGTTCGGAACAAGCATT+TGG - chr1_4:56780088-56780107 Msa0171930:intron 40.0%
CATAAACTTCATCAGTAGCC+CGG + chr1_4:56780157-56780176 None:intergenic 40.0%
ATTGAGGAAGATTGCAAAGC+TGG - chr1_4:56780185-56780204 Msa0171930:intron 40.0%
TGGAGATCACTCTAATGCTT+TGG - chr1_4:56780205-56780224 Msa0171930:intron 40.0%
TAATTGCCTACTTTCTGTGC+AGG - chr1_4:56780280-56780299 Msa0171930:intron 40.0%
GTCTCTAGTCGCAAATGTAA+TGG - chr1_4:56780487-56780506 Msa0171930:CDS 40.0%
CAATCCATGAAGCAAGGATT+TGG + chr1_4:56780698-56780717 None:intergenic 40.0%
! AATCCTTGCTTCATGGATTG+TGG - chr1_4:56780698-56780717 Msa0171930:intron 40.0%
AAACCACAATCCATGAAGCA+AGG + chr1_4:56780704-56780723 None:intergenic 40.0%
GAGAACATGGAATATGGAGA+AGG - chr1_4:56780976-56780995 Msa0171930:CDS 40.0%
! CTTTTGCTTATTGTTGGCCA+TGG + chr1_4:56781285-56781304 None:intergenic 40.0%
CATGGCCAACAATAAGCAAA+AGG - chr1_4:56781283-56781302 Msa0171930:CDS 40.0%
!!! TCCCCATTTTTAAGGTTCCT+TGG + chr1_4:56781463-56781482 None:intergenic 40.0%
ACTAAAGTTCCCATGGAGAT+GGG + chr1_4:56781516-56781535 None:intergenic 40.0%
! GGGAAAACTTTTCTATTCCC+AGG - chr1_4:56781551-56781570 Msa0171930:CDS 40.0%
! TCCCAGGAACATTTTATACC+CGG - chr1_4:56781567-56781586 Msa0171930:CDS 40.0%
TCAGAATCAAACTCCAAACG+TGG + chr1_4:56781753-56781772 None:intergenic 40.0%
GAACACTTTGTGCTAAACTG+TGG - chr1_4:56781891-56781910 Msa0171930:intron 40.0%
CTCAACACAGTGTTCTTGAA+CGG + chr1_4:56781965-56781984 None:intergenic 40.0%
CTTGAACTCTACAAGCCAAA+CGG + chr1_4:56782067-56782086 None:intergenic 40.0%
TACGCATGGGTCTTAACATT+TGG + chr1_4:56782140-56782159 None:intergenic 40.0%
!! TGCAATCTGTTGCTTTGTGA+TGG + chr1_4:56782348-56782367 None:intergenic 40.0%
ACATACAGTTGTTGGGCTTA+AGG + chr1_4:56782572-56782591 None:intergenic 40.0%
CTCTTAGCACATACAGTTGT+TGG + chr1_4:56782580-56782599 None:intergenic 40.0%
! GAGGAATGCTCACATTTTCA+AGG + chr1_4:56782606-56782625 None:intergenic 40.0%
TGTGGAATGTCTAGTTAGAG+AGG + chr1_4:56782625-56782644 None:intergenic 40.0%
TCTCTAACTAGACATTCCAC+AGG - chr1_4:56782624-56782643 Msa0171930:CDS 40.0%
CTCTAACTAGACATTCCACA+GGG - chr1_4:56782625-56782644 Msa0171930:CDS 40.0%
!! ATAATCTGTGTGAGTGTTGG+TGG - chr1_4:56782977-56782996 Msa0171930:intron 40.0%
CAGTGATACTTCCTTCTACA+AGG - chr1_4:56783080-56783099 Msa0171930:intron 40.0%
TTCTCGTACTACACAGTACT+TGG + chr1_4:56783178-56783197 None:intergenic 40.0%
TCCTCTTTCTTTGTACCTTC+GGG - chr1_4:56783275-56783294 Msa0171930:intron 40.0%
! TCTGAGGCATGCATTCTATA+AGG - chr1_4:56783418-56783437 Msa0171930:intron 40.0%
! TGACATGCTTGAAGCTTTAG+AGG - chr1_4:56783768-56783787 Msa0171930:intron 40.0%
!!! AGGGATTTTCTGGTTATCGT+TGG + chr1_4:56783800-56783819 None:intergenic 40.0%
ATAACCAGAAAATCCCTCCA+CGG - chr1_4:56783803-56783822 Msa0171930:intron 40.0%
! ATGGATTGAACCTTTGCAAG+AGG - chr1_4:56783867-56783886 Msa0171930:intron 40.0%
GCACTTTCACATTAATGTCC+AGG - chr1_4:56784216-56784235 Msa0171930:intron 40.0%
AGTATAACACTGGGTCTAGT+GGG + chr1_4:56784250-56784269 None:intergenic 40.0%
TAGTATAACACTGGGTCTAG+TGG + chr1_4:56784251-56784270 None:intergenic 40.0%
GCAGACCAAATTCCAAGTAA+TGG - chr1_4:56784310-56784329 Msa0171930:CDS 40.0%
!!! TAGAGGTGTTTTACCACTTC+GGG + chr1_4:56784586-56784605 None:intergenic 40.0%
!!! CTAGAGGTGTTTTACCACTT+CGG + chr1_4:56784587-56784606 None:intergenic 40.0%
GTTTGAAGGAAGTCTCCATT+GGG + chr1_4:56784641-56784660 None:intergenic 40.0%
TGTTTGAAGGAAGTCTCCAT+TGG + chr1_4:56784642-56784661 None:intergenic 40.0%
! CTCAAGGCATCTTTGTTTGA+AGG + chr1_4:56784655-56784674 None:intergenic 40.0%
CTTCAAACAAAGATGCCTTG+AGG - chr1_4:56784653-56784672 Msa0171930:intron 40.0%
CTGAAGAAGTTGCAGTATGA+AGG - chr1_4:56784702-56784721 Msa0171930:intron 40.0%
! GGCTTTAATGCATTCTGTTC+AGG + chr1_4:56784807-56784826 None:intergenic 40.0%
GAATGCATTAAAGCCTAAGG+CGG - chr1_4:56784812-56784831 Msa0171930:intron 40.0%
! AAGGAAGAACTAGAAGCACA+AGG - chr1_4:56784861-56784880 Msa0171930:intron 40.0%
!! ACATTTCTGGTTCCATCGAT+TGG + chr1_4:56784891-56784910 None:intergenic 40.0%
ACGCTGGTAAAGAACATTTC+TGG + chr1_4:56784904-56784923 None:intergenic 40.0%
ACTTCTTCTTCCTCTTCAAC+GGG + chr1_4:56784981-56785000 None:intergenic 40.0%
CACTTCTTCTTCCTCTTCAA+CGG + chr1_4:56784982-56785001 None:intergenic 40.0%
TTAAATATGGTCCGTGTTGC+AGG - chr1_4:56785080-56785099 Msa0171930:intron 40.0%
ATTGATCTCACGCATAAAGC+TGG - chr1_4:56785122-56785141 Msa0171930:intron 40.0%
TATTGGAAACGTCGCTTCTT+AGG - chr1_4:56785162-56785181 Msa0171930:CDS 40.0%
TGAAGATGATGAAGCAGATG+AGG - chr1_4:56785290-56785309 Msa0171930:intron 40.0%
! TCTACATCTTGGTTCTCTAC+TGG + chr1_4:56785357-56785376 None:intergenic 40.0%
TAGAGAACCAAGATGTAGAG+AGG - chr1_4:56785358-56785377 Msa0171930:intron 40.0%
CCTTTATCCTCTCTACATCT+TGG + chr1_4:56785368-56785387 None:intergenic 40.0%
CCAAGATGTAGAGAGGATAA+AGG - chr1_4:56785365-56785384 Msa0171930:intron 40.0%
TGGACTCCAATCATTTGAAG+GGG + chr1_4:56785414-56785433 None:intergenic 40.0%
CTGGACTCCAATCATTTGAA+GGG + chr1_4:56785415-56785434 None:intergenic 40.0%
!! GACTTTTTAGAAGTGGCAGA+GGG + chr1_4:56785459-56785478 None:intergenic 40.0%
!! TGACTTTTTAGAAGTGGCAG+AGG + chr1_4:56785460-56785479 None:intergenic 40.0%
ATCAAGACGGAATATGGTTG+AGG - chr1_4:56785491-56785510 Msa0171930:intron 40.0%
GTTGAGGTATGATAATCCCT+TGG - chr1_4:56785507-56785526 Msa0171930:intron 40.0%
! TTACACATGTTCTGGTTGGT+TGG - chr1_4:56785544-56785563 Msa0171930:intron 40.0%
! TACACATGTTCTGGTTGGTT+GGG - chr1_4:56785545-56785564 Msa0171930:intron 40.0%
! ATGAAAGGCTGAGTCTGTTT+TGG - chr1_4:56785617-56785636 Msa0171930:intron 40.0%
!! CGATGATGATTGGTTTCCTT+TGG - chr1_4:56785751-56785770 Msa0171930:intron 40.0%
AACGCCTCAAATATGTCCAA+AGG + chr1_4:56785770-56785789 None:intergenic 40.0%
! GGACATATTTGAGGCGTTTA+AGG - chr1_4:56785772-56785791 Msa0171930:intron 40.0%
! TTGAGGCGTTTAAGGAAATG+AGG - chr1_4:56785780-56785799 Msa0171930:intron 40.0%
TGTATACCTTAGCAGATGCT+TGG - chr1_4:56785831-56785850 Msa0171930:intron 40.0%
GTATACCTTAGCAGATGCTT+GGG - chr1_4:56785832-56785851 Msa0171930:intron 40.0%
TATACCTTAGCAGATGCTTG+GGG - chr1_4:56785833-56785852 Msa0171930:intron 40.0%
TGAAGAACAAACCTCCTCAT+AGG - chr1_4:56785876-56785895 Msa0171930:intron 40.0%
ACAGGAATGGGAAGTAGATT+TGG - chr1_4:56785904-56785923 Msa0171930:intron 40.0%
AGAAGGCAAGTAACTTAACC+TGG - chr1_4:56785942-56785961 Msa0171930:intron 40.0%
CAAGCTTTCCTCTGTTGAAT+TGG - chr1_4:56785990-56786009 Msa0171930:intron 40.0%
! TTTTTGCTCAGTCCAAAGGT+TGG + chr1_4:56786438-56786457 None:intergenic 40.0%
GTGTTATCAGCTACTCTAGA+AGG - chr1_4:56786728-56786747 Msa0171930:intron 40.0%
ATAAAGCGGTCTGCAACATA+GGG + chr1_4:56787248-56787267 None:intergenic 40.0%
CTCAGTTTCAGATCAGACTT+TGG - chr1_4:56787351-56787370 Msa0171930:CDS 40.0%
TTTCAGATCAGACTTTGGAC+AGG - chr1_4:56787356-56787375 Msa0171930:CDS 40.0%
TTCAGATCAGACTTTGGACA+GGG - chr1_4:56787357-56787376 Msa0171930:CDS 40.0%
AGGGTGATTTCTGCTAAACA+GGG - chr1_4:56787376-56787395 Msa0171930:CDS 40.0%
CAATCCTTCAAATGATGGCA+TGG - chr1_4:56787405-56787424 Msa0171930:CDS 40.0%
AAAACAGTAGTACCGCATGA+AGG + chr1_4:56787453-56787472 None:intergenic 40.0%
TACAAACATGGCAAGTTTCC+TGG + chr1_4:56787583-56787602 None:intergenic 40.0%
AAAAGCGAAAAACTAGGGAG+AGG + chr1_4:56787628-56787647 None:intergenic 40.0%
ATGAATTTGACTGACTGGGT+TGG + chr1_4:56787733-56787752 None:intergenic 40.0%
GCTCTTCCATGAAACTGAAC+CGG + chr1_4:56778926-56778945 None:intergenic 45.0%
TCATGGAAGAGCTCATGAAC+CGG - chr1_4:56778934-56778953 Msa0171930:three_prime_UTR 45.0%
TCCTAGGTCGTTTCATGGTT+TGG - chr1_4:56779028-56779047 Msa0171930:CDS 45.0%
ACCAAACCATGAAACGACCT+AGG + chr1_4:56779032-56779051 None:intergenic 45.0%
GATTCGTTGAGGAGAGAGTT+AGG - chr1_4:56779806-56779825 Msa0171930:intron 45.0%
ATTCCACTCTCAGCTGATGA+TGG - chr1_4:56780001-56780020 Msa0171930:intron 45.0%
AAACCATCATCAGCTGAGAG+TGG + chr1_4:56780007-56780026 None:intergenic 45.0%
!! AGTGTTCTTGAAGGGTGCTA+AGG - chr1_4:56780124-56780143 Msa0171930:intron 45.0%
!! GTGTTCTTGAAGGGTGCTAA+GGG - chr1_4:56780125-56780144 Msa0171930:intron 45.0%
AGTTGACCTGCACAGAAAGT+AGG + chr1_4:56780289-56780308 None:intergenic 45.0%
! CCATGAAGCAAGGATTTGGT+TGG + chr1_4:56780694-56780713 None:intergenic 45.0%
CCAACCAAATCCTTGCTTCA+TGG - chr1_4:56780691-56780710 Msa0171930:intron 45.0%
GACTAAAGTTCCCATGGAGA+TGG + chr1_4:56781517-56781536 None:intergenic 45.0%
CCCGGGTATAAAATGTTCCT+GGG + chr1_4:56781571-56781590 None:intergenic 45.0%
! CCCAGGAACATTTTATACCC+GGG - chr1_4:56781568-56781587 Msa0171930:CDS 45.0%
TCCCGGGTATAAAATGTTCC+TGG + chr1_4:56781572-56781591 None:intergenic 45.0%
!! GTATCTCTAGAGTCCACGTT+TGG - chr1_4:56781737-56781756 Msa0171930:CDS 45.0%
ATTCTGACTCTCCTATCACC+TGG - chr1_4:56781766-56781785 Msa0171930:CDS 45.0%
GCTAAACTGTGGAACAACAG+TGG - chr1_4:56781902-56781921 Msa0171930:intron 45.0%
CGTTCAAGAACACTGTGTTG+AGG - chr1_4:56781963-56781982 Msa0171930:intron 45.0%
! GTCTTTGTTTGGTTACCCTG+TGG + chr1_4:56782643-56782662 None:intergenic 45.0%
! ATAGTCTTAGTGGCAGACTG+TGG + chr1_4:56782672-56782691 None:intergenic 45.0%
GTATTCATAGTGGCAGACTG+TGG + chr1_4:56782802-56782821 None:intergenic 45.0%
CATTAAAGCAGGACACCACA+AGG + chr1_4:56783051-56783070 None:intergenic 45.0%
CTAGTGACTAAGTAACCCTG+TGG - chr1_4:56783116-56783135 Msa0171930:CDS 45.0%
GTGTAGTACGAGAAGCTATC+AGG - chr1_4:56783184-56783203 Msa0171930:CDS 45.0%
CTACATATGGATGGGAACCA+CGG - chr1_4:56783249-56783268 Msa0171930:intron 45.0%
ACAAAGAAAGAGGATCTCCG+TGG + chr1_4:56783269-56783288 None:intergenic 45.0%
!! GCTTGAAGCTTTAGAGGCTA+TGG - chr1_4:56783774-56783793 Msa0171930:intron 45.0%
TAACCAGAAAATCCCTCCAC+GGG - chr1_4:56783804-56783823 Msa0171930:intron 45.0%
TCCATGAGCTCACTAATGTC+CGG + chr1_4:56783852-56783871 None:intergenic 45.0%
GATTGAACCTTTGCAAGAGG+AGG - chr1_4:56783870-56783889 Msa0171930:intron 45.0%
!!! AGAGGTGTTTTACCACTTCG+GGG + chr1_4:56784585-56784604 None:intergenic 45.0%
AAGATGCCTTGAGGAGAAGA+AGG - chr1_4:56784662-56784681 Msa0171930:intron 45.0%
!! GGAATTGTAGCTTTAGGGGA+TGG - chr1_4:56784723-56784742 Msa0171930:intron 45.0%
! AGCATTTTACTAGCCGCCTT+AGG + chr1_4:56784828-56784847 None:intergenic 45.0%
GCACAAGGTTTACCAATCGA+TGG - chr1_4:56784876-56784895 Msa0171930:intron 45.0%
TTCTTGCTTTCTGAACACGC+TGG + chr1_4:56784920-56784939 None:intergenic 45.0%
CGTTGAAGAGGAAGAAGAAG+TGG - chr1_4:56784980-56784999 Msa0171930:intron 45.0%
AAACGTCGCTTCTTAGGAGA+AGG - chr1_4:56785168-56785187 Msa0171930:CDS 45.0%
TGTAGGGGATGATGCAAAAG+AGG - chr1_4:56785266-56785285 Msa0171930:intron 45.0%
TGATGAAGCAGATGAGGATG+AGG - chr1_4:56785296-56785315 Msa0171930:intron 45.0%
GGAAGTAGAACAGGTAGAAG+AGG - chr1_4:56785323-56785342 Msa0171930:intron 45.0%
GCTGGACTCCAATCATTTGA+AGG + chr1_4:56785416-56785435 None:intergenic 45.0%
CGTCAGAATCTTTCAACAGC+TGG + chr1_4:56785434-56785453 None:intergenic 45.0%
! ACACATGTTCTGGTTGGTTG+GGG - chr1_4:56785546-56785565 Msa0171930:intron 45.0%
CTTTCATGCATGATCCCTCA+AGG + chr1_4:56785604-56785623 None:intergenic 45.0%
CTTGAGGGATCATGCATGAA+AGG - chr1_4:56785602-56785621 Msa0171930:intron 45.0%
ATCATCGGCATCATCCTGTA+AGG + chr1_4:56785738-56785757 None:intergenic 45.0%
AGGATGATGCCGATGATGAT+TGG - chr1_4:56785741-56785760 Msa0171930:intron 45.0%
AGAACAAACCTCCTCATAGG+TGG - chr1_4:56785879-56785898 Msa0171930:intron 45.0%
TCATAGGTGGTCACAGGAAT+GGG - chr1_4:56785892-56785911 Msa0171930:intron 45.0%
GATAATGCAGCGGATCAAGA+AGG - chr1_4:56786659-56786678 Msa0171930:intron 45.0%
ACTCAGGTCATACAATTGGG+AGG - chr1_4:56786969-56786988 Msa0171930:intron 45.0%
CTCAGGTCATACAATTGGGA+GGG - chr1_4:56786970-56786989 Msa0171930:intron 45.0%
GTCAAGAAAGCTGAAGGTAG+AGG + chr1_4:56787047-56787066 None:intergenic 45.0%
CTGCAGACAACTCATAGTCT+TGG - chr1_4:56787071-56787090 Msa0171930:intron 45.0%
GTCTTGGCTATAAGTTTGGG+AGG - chr1_4:56787087-56787106 Msa0171930:intron 45.0%
! TTATTGGCTGGGTTGGGTAA+CGG + chr1_4:56787177-56787196 None:intergenic 45.0%
! AAACAAGGGAAAGCATGAGC+TGG + chr1_4:56787224-56787243 None:intergenic 45.0%
CTGCAACATAGGGGAAACAA+GGG + chr1_4:56787238-56787257 None:intergenic 45.0%
TCTGCAACATAGGGGAAACA+AGG + chr1_4:56787239-56787258 None:intergenic 45.0%
TAAAGCGGTCTGCAACATAG+GGG + chr1_4:56787247-56787266 None:intergenic 45.0%
CATAAAGCGGTCTGCAACAT+AGG + chr1_4:56787249-56787268 None:intergenic 45.0%
GAGATGACCTCGTCATAAAG+CGG + chr1_4:56787262-56787281 None:intergenic 45.0%
ATCTCTCTCTGCCTTGATCT+TGG - chr1_4:56787277-56787296 Msa0171930:intron 45.0%
TCTCTCTCTGCCTTGATCTT+GGG - chr1_4:56787278-56787297 Msa0171930:intron 45.0%
! CATCTAGTTCCCCAAGATCA+AGG + chr1_4:56787291-56787310 None:intergenic 45.0%
CAGGGTGATTTCTGCTAAAC+AGG - chr1_4:56787375-56787394 Msa0171930:CDS 45.0%
GGGTGATTTCTGCTAAACAG+GGG - chr1_4:56787377-56787396 Msa0171930:CDS 45.0%
GCATCCATGCCATCATTTGA+AGG + chr1_4:56787412-56787431 None:intergenic 45.0%
TCAAATGATGGCATGGATGC+TGG - chr1_4:56787412-56787431 Msa0171930:CDS 45.0%
! TGCGGTACTACTGTTTTGCA+CGG - chr1_4:56787456-56787475 Msa0171930:CDS 45.0%
TTTGCACGGAAAAAAGGGAG+TGG - chr1_4:56787470-56787489 Msa0171930:CDS 45.0%
GCACGACAGTTCTACAAACA+TGG + chr1_4:56787595-56787614 None:intergenic 45.0%
!!! TTATTTTAAATACTTTTTTA+TGG - chr1_4:56782885-56782904 Msa0171930:intron 5.0%
AACCGCTTAACTCCTCGAAC+CGG - chr1_4:56778810-56778829 Msa0171930:three_prime_UTR 50.0%
CGCTATCTTCTCCAGAGAAG+CGG - chr1_4:56778847-56778866 Msa0171930:three_prime_UTR 50.0%
! TTCTTTCTGGTCCGCTTCTC+TGG + chr1_4:56778861-56778880 None:intergenic 50.0%
CAGTCTCCGGTTCAGTTTCA+TGG - chr1_4:56778917-56778936 Msa0171930:three_prime_UTR 50.0%
CATGGAAGAGCTCATGAACC+GGG - chr1_4:56778935-56778954 Msa0171930:three_prime_UTR 50.0%
GAGAAACTCCGGTTGAGTCA+CGG + chr1_4:56778968-56778987 None:intergenic 50.0%
!! ATTGCTGCTGGTTTGAGTCC+TGG - chr1_4:56779005-56779024 Msa0171930:CDS 50.0%
TAATGGCGATGAACAAGCCG+CGG - chr1_4:56779067-56779086 Msa0171930:CDS 50.0%
TTGAGGAGAGAGTTAGGTGC+AGG - chr1_4:56779812-56779831 Msa0171930:intron 50.0%
TGAGGAGAGAGTTAGGTGCA+GGG - chr1_4:56779813-56779832 Msa0171930:intron 50.0%
!! TTCTTGAAGGGTGCTAAGGG+TGG - chr1_4:56780128-56780147 Msa0171930:intron 50.0%
AAACTTCATCAGTAGCCCGG+AGG + chr1_4:56780154-56780173 None:intergenic 50.0%
! GGCTATTTCAGGTATTCCGC+AGG + chr1_4:56780944-56780963 None:intergenic 50.0%
! CTAGAGCCGACTCTTATGAC+AGG - chr1_4:56781244-56781263 Msa0171930:CDS 50.0%
! GGTTAGTTGTTGCGTGTCCA+TGG - chr1_4:56781265-56781284 Msa0171930:CDS 50.0%
TGGTGGGACTAAAGTTCCCA+TGG + chr1_4:56781523-56781542 None:intergenic 50.0%
ATAGCAGCGCTATAGCCTAG+CGG + chr1_4:56781940-56781959 None:intergenic 50.0%
CACTGTGTTGAGGTCTCCAT+TGG - chr1_4:56781973-56781992 Msa0171930:intron 50.0%
CAAGATGTCGCTGAGTTGCT+TGG - chr1_4:56782083-56782102 Msa0171930:intron 50.0%
TGTGGTGTGCGGTCTTTGTT+TGG + chr1_4:56782654-56782673 None:intergenic 50.0%
!! ATCTGTGTGAGTGTTGGTGG+TGG - chr1_4:56782980-56782999 Msa0171930:intron 50.0%
!! TCTGTGTGAGTGTTGGTGGT+GGG - chr1_4:56782981-56783000 Msa0171930:intron 50.0%
GACTAAGTAACCCTGTGGAC+TGG - chr1_4:56783121-56783140 Msa0171930:CDS 50.0%
TACAGAGACACCAGTCCACA+GGG + chr1_4:56783134-56783153 None:intergenic 50.0%
GTGTCTCTGTAGGCTGTTAG+TGG - chr1_4:56783143-56783162 Msa0171930:CDS 50.0%
! GCCCGAAGGTACAAAGAAAG+AGG + chr1_4:56783279-56783298 None:intergenic 50.0%
! TGTACCTTCGGGCATTGTGT+CGG - chr1_4:56783286-56783305 Msa0171930:intron 50.0%
GGGAATGCTTTGACACAAGC+CGG - chr1_4:56783715-56783734 Msa0171930:intron 50.0%
TCAAGATCATTGCCCGTGGA+GGG + chr1_4:56783819-56783838 None:intergenic 50.0%
ACCGGACATTAGTGAGCTCA+TGG - chr1_4:56783848-56783867 Msa0171930:intron 50.0%
AGTTCAGCCTCCTCTTGCAA+AGG + chr1_4:56783880-56783899 None:intergenic 50.0%
TTGCAAGAGGAGGCTGAACT+TGG - chr1_4:56783880-56783899 Msa0171930:intron 50.0%
! ACTGGGTCTAGTGGGCATAT+TGG + chr1_4:56784242-56784261 None:intergenic 50.0%
! GTTGAAGAAGGTGGCCTTAC+TGG - chr1_4:56784540-56784559 Msa0171930:intron 50.0%
CCATCAGCATCAGGATCTAG+AGG + chr1_4:56784603-56784622 None:intergenic 50.0%
CCTCTAGATCCTGATGCTGA+TGG - chr1_4:56784600-56784619 Msa0171930:intron 50.0%
GGTACACCTTCTTCTCCTCA+AGG + chr1_4:56784671-56784690 None:intergenic 50.0%
TCTTCTTCCTCTTCAACGGG+AGG + chr1_4:56784978-56784997 None:intergenic 50.0%
AATATGGTCCGTGTTGCAGG+TGG - chr1_4:56785083-56785102 Msa0171930:intron 50.0%
CTCTTCATCCACCTGCAACA+CGG + chr1_4:56785094-56785113 None:intergenic 50.0%
GATCTCACGCATAAAGCTGG+AGG - chr1_4:56785125-56785144 Msa0171930:intron 50.0%
TCACGCATAAAGCTGGAGGA+AGG - chr1_4:56785129-56785148 Msa0171930:intron 50.0%
TGAAGCAGATGAGGATGAGG+AGG - chr1_4:56785299-56785318 Msa0171930:intron 50.0%
TGAGGAGGAGGAAGTAGAAC+AGG - chr1_4:56785314-56785333 Msa0171930:intron 50.0%
! CACATGTTCTGGTTGGTTGG+GGG - chr1_4:56785547-56785566 Msa0171930:intron 50.0%
! ACATGTTCTGGTTGGTTGGG+GGG - chr1_4:56785548-56785567 Msa0171930:intron 50.0%
AGATGCTTGGGGATGGACAT+GGG - chr1_4:56785844-56785863 Msa0171930:intron 50.0%
CATTCCTGTGACCACCTATG+AGG + chr1_4:56785893-56785912 None:intergenic 50.0%
CTCATAGGTGGTCACAGGAA+TGG - chr1_4:56785891-56785910 Msa0171930:intron 50.0%
TTGGGAGGGACACCAACTAT+CGG - chr1_4:56786984-56787003 Msa0171930:intron 50.0%
ACGGCACAATCTCCGATAGT+TGG + chr1_4:56786999-56787018 None:intergenic 50.0%
TATAGCTGCGCGCAAGATCA+CGG + chr1_4:56787018-56787037 None:intergenic 50.0%
ACGGAGTGAGTCTCTAGACT+TGG + chr1_4:56787158-56787177 None:intergenic 50.0%
TTGCAGACCGCTTTATGACG+AGG - chr1_4:56787252-56787271 Msa0171930:intron 50.0%
CTCTCTCTGCCTTGATCTTG+GGG - chr1_4:56787279-56787298 Msa0171930:intron 50.0%
! ATCTGAAACTGAGATCCCCG+TGG + chr1_4:56787344-56787363 None:intergenic 50.0%
!! TGACTGACTGGGTTGGTTGT+TGG + chr1_4:56787726-56787745 None:intergenic 50.0%
! GTCCGGTTCGAGGAGTTAAG+CGG + chr1_4:56778815-56778834 None:intergenic 55.0%
CTTAACTCCTCGAACCGGAC+CGG - chr1_4:56778815-56778834 Msa0171930:three_prime_UTR 55.0%
GAAGATAGCGCTGCTCGAAC+CGG + chr1_4:56778837-56778856 None:intergenic 55.0%
AAGAGCTCATGAACCGGGCT+AGG - chr1_4:56778940-56778959 Msa0171930:three_prime_UTR 55.0%
TTGAGTCACGGTTCCTAGCC+CGG + chr1_4:56778956-56778975 None:intergenic 55.0%
GCTAGGAACCGTGACTCAAC+CGG - chr1_4:56778957-56778976 Msa0171930:three_prime_UTR 55.0%
! CTGGTTTGAGTCCTGGTCCT+AGG - chr1_4:56779012-56779031 Msa0171930:CDS 55.0%
CCATGAAACGACCTAGGACC+AGG + chr1_4:56779026-56779045 None:intergenic 55.0%
CCTGGTCCTAGGTCGTTTCA+TGG - chr1_4:56779023-56779042 Msa0171930:CDS 55.0%
TCGTACGAGATGGAAGCTGC+TGG - chr1_4:56780233-56780252 Msa0171930:intron 55.0%
GATGGAAGCTGCTGGACGAA+TGG - chr1_4:56780241-56780260 Msa0171930:intron 55.0%
!! GAGTGTGCTTGGTCTTGACC+TGG - chr1_4:56780863-56780882 Msa0171930:intron 55.0%
CGCTGAGTTGCTTGGCATGA+TGG - chr1_4:56782091-56782110 Msa0171930:intron 55.0%
TAGTGGCAGACTGTGGTGTG+CGG + chr1_4:56782665-56782684 None:intergenic 55.0%
!! CTGTGTGAGTGTTGGTGGTG+GGG - chr1_4:56782982-56783001 Msa0171930:intron 55.0%
!! TGTGTGAGTGTTGGTGGTGG+GGG - chr1_4:56782983-56783002 Msa0171930:intron 55.0%
!! TTGGTGGTGGGGGAGTGTTA+AGG - chr1_4:56782993-56783012 Msa0171930:intron 55.0%
CTACAGAGACACCAGTCCAC+AGG + chr1_4:56783135-56783154 None:intergenic 55.0%
!! CTGTGGACTGGTGTCTCTGT+AGG - chr1_4:56783133-56783152 Msa0171930:CDS 55.0%
! GTACCTTCGGGCATTGTGTC+GGG - chr1_4:56783287-56783306 Msa0171930:intron 55.0%
! TTGCCCGTGGAGGGATTTTC+TGG + chr1_4:56783810-56783829 None:intergenic 55.0%
CTCAAGATCATTGCCCGTGG+AGG + chr1_4:56783820-56783839 None:intergenic 55.0%
CTGCTCAAGATCATTGCCCG+TGG + chr1_4:56783823-56783842 None:intergenic 55.0%
! GTCTAGTGGGCATATTGGCC+TGG + chr1_4:56784237-56784256 None:intergenic 55.0%
! ATGCAGGCAAGTGCTACTGC+TGG - chr1_4:56784410-56784429 Msa0171930:intron 55.0%
! GCCTTACTGGAGAGCGCAAA+CGG - chr1_4:56784553-56784572 Msa0171930:intron 55.0%
ACCGTTTGCGCTCTCCAGTA+AGG + chr1_4:56784557-56784576 None:intergenic 55.0%
! TTACTGGAGAGCGCAAACGG+TGG - chr1_4:56784556-56784575 Msa0171930:intron 55.0%
! TACTGGAGAGCGCAAACGGT+GGG - chr1_4:56784557-56784576 Msa0171930:intron 55.0%
TCAACGGGAGGAACCCAAAG+CGG + chr1_4:56784966-56784985 None:intergenic 55.0%
TTGGGTTCCTCCCGTTGAAG+AGG - chr1_4:56784968-56784987 Msa0171930:intron 55.0%
GTTGCAGGTGGATGAAGAGC+TGG - chr1_4:56785095-56785114 Msa0171930:intron 55.0%
AGCAGATGAGGATGAGGAGG+AGG - chr1_4:56785302-56785321 Msa0171930:intron 55.0%
! CATGTTCTGGTTGGTTGGGG+GGG - chr1_4:56785549-56785568 Msa0171930:intron 55.0%
CCATCCCCAAGCATCTGCTA+AGG + chr1_4:56785840-56785859 None:intergenic 55.0%
CCTTAGCAGATGCTTGGGGA+TGG - chr1_4:56785837-56785856 Msa0171930:intron 55.0%
CAGATGCTTGGGGATGGACA+TGG - chr1_4:56785843-56785862 Msa0171930:intron 55.0%
ACCTCCTCATAGGTGGTCAC+AGG - chr1_4:56785886-56785905 Msa0171930:intron 55.0%
TCCTGTGACCACCTATGAGG+AGG + chr1_4:56785890-56785909 None:intergenic 55.0%
AGATGCAGCTGTTGCCGTTG+TGG - chr1_4:56787306-56787325 Msa0171930:intron 55.0%
TGTTGCCGTTGTGGCAGACT+TGG - chr1_4:56787315-56787334 Msa0171930:intron 55.0%
GGTCTCCAAGTCTGCCACAA+CGG + chr1_4:56787323-56787342 None:intergenic 55.0%
TGTGGCAGACTTGGAGACCA+CGG - chr1_4:56787324-56787343 Msa0171930:intron 55.0%
!! GGTGGGGGAGTGTTAAGGTC+AGG - chr1_4:56782998-56783017 Msa0171930:intron 60.0%
CTTCCCGACACAATGCCCGA+AGG + chr1_4:56783293-56783312 None:intergenic 60.0%
! CTTCGGGCATTGTGTCGGGA+AGG - chr1_4:56783291-56783310 Msa0171930:intron 60.0%
AATCTCGTGGTCGGCCGCTT+TGG - chr1_4:56784949-56784968 Msa0171930:intron 60.0%
! ATCTCGTGGTCGGCCGCTTT+GGG - chr1_4:56784950-56784969 Msa0171930:intron 60.0%
GGTTGGGGGGGTTGACAATC+AGG - chr1_4:56785561-56785580 Msa0171930:intron 60.0%
GTGGCAGACTTGGAGACCAC+GGG - chr1_4:56787325-56787344 Msa0171930:intron 60.0%
TGGCAGACTTGGAGACCACG+GGG - chr1_4:56787326-56787345 Msa0171930:intron 60.0%
TAGCGCTGCTCGAACCGGTC+CGG + chr1_4:56778832-56778851 None:intergenic 65.0%
! AGGGTGCTAAGGGTGGCCTC+CGG - chr1_4:56780135-56780154 Msa0171930:intron 65.0%
AAACGGTGGGTGCCCCGAAG+TGG - chr1_4:56784570-56784589 Msa0171930:intron 65.0%
! GCTCGAACCGGTCCGGTTCG+AGG + chr1_4:56778825-56778844 None:intergenic 70.0%
GGGTGCTAAGGGTGGCCTCC+GGG - chr1_4:56780136-56780155 Msa0171930:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 56778622 56787798 56778622 ID=Msa0171930;Name=Msa0171930
chr1_4 mRNA 56778622 56787798 56778622 ID=Msa0171930-mRNA-1;Parent=Msa0171930;Name=Msa0171930-mRNA-1;_AED=0.17;_eAED=0.17;_QI=134|0.91|0.92|1|1|1|13|357|892
chr1_4 exon 56778622 56779162 56778622 ID=Msa0171930-mRNA-1:exon:17301;Parent=Msa0171930-mRNA-1
chr1_4 exon 56779312 56779445 56779312 ID=Msa0171930-mRNA-1:exon:17300;Parent=Msa0171930-mRNA-1
chr1_4 exon 56780474 56780677 56780474 ID=Msa0171930-mRNA-1:exon:17299;Parent=Msa0171930-mRNA-1
chr1_4 exon 56780908 56781318 56780908 ID=Msa0171930-mRNA-1:exon:17298;Parent=Msa0171930-mRNA-1
chr1_4 exon 56781401 56781884 56781401 ID=Msa0171930-mRNA-1:exon:17297;Parent=Msa0171930-mRNA-1
chr1_4 exon 56782494 56782662 56782494 ID=Msa0171930-mRNA-1:exon:17296;Parent=Msa0171930-mRNA-1
chr1_4 exon 56783108 56783265 56783108 ID=Msa0171930-mRNA-1:exon:17295;Parent=Msa0171930-mRNA-1
chr1_4 exon 56784264 56784341 56784264 ID=Msa0171930-mRNA-1:exon:17294;Parent=Msa0171930-mRNA-1
chr1_4 exon 56785155 56785227 56785155 ID=Msa0171930-mRNA-1:exon:17293;Parent=Msa0171930-mRNA-1
chr1_4 exon 56785423 56785483 56785423 ID=Msa0171930-mRNA-1:exon:17292;Parent=Msa0171930-mRNA-1
chr1_4 exon 56786119 56786336 56786119 ID=Msa0171930-mRNA-1:exon:17291;Parent=Msa0171930-mRNA-1
chr1_4 exon 56786446 56786617 56786446 ID=Msa0171930-mRNA-1:exon:17290;Parent=Msa0171930-mRNA-1
chr1_4 exon 56787332 56787798 56787332 ID=Msa0171930-mRNA-1:exon:17289;Parent=Msa0171930-mRNA-1
chr1_4 five_prime_UTR 56787665 56787798 56787665 ID=Msa0171930-mRNA-1:five_prime_utr;Parent=Msa0171930-mRNA-1
chr1_4 CDS 56787332 56787664 56787332 ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4 CDS 56786446 56786617 56786446 ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4 CDS 56786119 56786336 56786119 ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4 CDS 56785423 56785483 56785423 ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4 CDS 56785155 56785227 56785155 ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4 CDS 56784264 56784341 56784264 ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4 CDS 56783108 56783265 56783108 ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4 CDS 56782494 56782662 56782494 ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4 CDS 56781401 56781884 56781401 ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4 CDS 56780908 56781318 56780908 ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4 CDS 56780474 56780677 56780474 ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4 CDS 56779312 56779445 56779312 ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4 CDS 56778979 56779162 56778979 ID=Msa0171930-mRNA-1:cds;Parent=Msa0171930-mRNA-1
chr1_4 three_prime_UTR 56778622 56778978 56778622 ID=Msa0171930-mRNA-1:three_prime_utr;Parent=Msa0171930-mRNA-1
Gene Sequence

>Msa0171930

ATGCATTCATGTTACAGTTACAGTTACGGCTCCACTTACATCCCCTTCAAATTAAACCGCTTAACTCCTCGAACCGGACCGGTTCGAGCAGCGCTATCTTCTCCAGAGAAGCGGACCAGAAAGAAGAAGCAAGTGAAAGATGATGACACTTTACTTGAGAACAGTCTCCGGTTCAGTTTCATGGAAGAGCTCATGAACCGGGCTAGGAACCGTGACTCAACCGGAGTTTCTCAAGTTATGTATGATATGATTGCTGCTGGTTTGAGTCCTGGTCCTAGGTCGTTTCATGGTTTGGTTGTTTCCTATGCTCTTAATGGCGATGAACAAGCCGCGATGGATTCGTTGAGGAGAGAGTTAGGTGCAGGGCTTCGACCGATTCATGAAACTTTTGTTGCATTGGTGAGATTGTTTGGGTCTAAAGGTCATTCAACTAAAGGTTTAGAGATACTTGGAGCTATGGAGAATCTAAATTATGATATTCGTCATGCTTGGATAATTCTTATTGAGGAACTTGTTCGGAACAAGCATTTGGAAGATGCTAATAAAGTGTTCTTGAAGGGTGCTAAGGGTGGCCTCCGGGCTACTGATGAAGTTTATGATCTCCTAATTGAGGAAGATTGCAAAGCTGGAGATCACTCTAATGCTTTGGAAATTTCGTACGAGATGGAAGCTGCTGGACGAATGGCAACAACATTCCATTTTAATTGCCTACTTTCTGTGCAGGCTACCTGCGGAATACCTGAAATAGCCTTTACAACATTTGAGAACATGGAATATGGAGAAGATTATATGAAGCCTGATACAGAAACATACAATTGGGTCATTCAAGCGTATACTAGAGCCGACTCTTATGACAGAGTTCAAGATGTCGCTGAGTTGCTTGGCATGATGGTTGAAGATCATAAGCGCGTACAGCCAAATGTTAAGACCCATGCGCTGTTAGTGGAGTGTTTTACCAAGTACTGTGTAGTACGAGAAGCTATCAGGCATTTCCGAGCACTTAAAAACTTTGAAGGGGGAACGAAAATTCTACATATGGATGGGAACCACGGAGATCCTCTTTCTTTGTACCTTCGGGCATTGTGTCGGGAAGGTAGGATTATTGACATGCTTGAAGCTTTAGAGGCTATGGCCAACGATAACCAGAAAATCCCTCCACGGGCAATGATCTTGAGCAGAAAATACCGGACATTAGTGAGCTCATGGATTGAACCTTTGCAAGAGGAGGCTGAACTTGGTTATGAGATTGATTATATTGCTAGATATGTTGAAGAAGGTGGCCTTACTGGAGAGCGCAAACGGTGGGTGCCCCGAAGTGGTAAAACACCTCTAGATCCTGATGCTGATGGATTTATATATTCAAACCCAATGGAGACTTCCTTCAAACAAAGATGCCTTGAGGAGAAGAAGGTGTACCATAAGAAGCTTCTGAAGAAGTTGCAGTATGAAGGAATTGTAGCTTTAGGGGATGGTGCATCTGAATCCGATTATGTTAGAGTGATTGAGTGGCTAAAGAAAATCATAAAGGGGCCTGAACAGAATGCATTAAAGCCTAAGGCGGCTAGTAAAATGCTTGTGAATGAATTGAAGGAAGAACTAGAAGCACAAGGTTTACCAATCGATGGAACCAGAAATGTTCTTTACCAGCGTGTTCAGAAAGCAAGAAGAATAAATCAATCTCGTGGTCGGCCGCTTTGGGTTCCTCCCGTTGAAGAGGAAGAAGAAGTGGTTGATTCTTTATCTGTTGTGGATGAAGAGCTGGATGCATTGATCTCACGCATAAAGCTGGAGGAAGGAAATACAGAGTATTGGAAACGTCGCTTCTTAGGAGAAGGCTTAAATGGTGATAATGGAAATGCAATGGATGAAGGTGAATCAGAGTCCCCTGATGTTCAAGATTATATTGATGTTGTAGGGGATGATGCAAAAGAGGCTGAAGATGATGAAGCAGATGAGGATGAGGAGGAGGAAGTAGAACAGGTAGAAGAGGAAGTAGCACCAGTAGAGAACCAAGATGTAGAGAGGATAAAGGAAAAGGAAGTTGAATCTAAAAAACCCCTTCAAATGATTGGAGTCCAGCTGTTGAAAGATTCTGACGAACCCTCTGCCACTTCTAAAAAGTCAAGAAGAAGAAGATCAAGACGGAATATGGTTGAGGATGATGCCGATGATGATTGGTTTCCTTTGGACATATTTGAGGCGTTTAAGGAAATGAGGAATCGAAGAGTGTTTGATGTATCAGACATGTATACCTTAGCAGATGCTTGGGGATGGACATGGGAGAGAGAACTGAAGAACAAACCTCCTCATAGGTGGTCACAGGAATGGGAAGTAGATTTGGCAATAAAAGTTATGCAGAAGGTCATACAATTGGGAGGGACACCAACTATCGGAGATTGTGCCGTGATCTTGCGCGCAGCTATAACAGCACCTCTACCTTCAGCTTTCTTGACAATTCTGCAGACAACTCATAGTCTTGGCTATAAGTTTGGGAGACCGCTTTATGACGAGGTCATCTCTCTCTGCCTTGATCTTGGGGAACTAGATGCAGCTGTTGCCGTTGTGGCAGACTTGGAGACCACGGGGATCTCAGTTTCAGATCAGACTTTGGACAGGGTGATTTCTGCTAAACAGGGGATTGACAATCCTTCAAATGATGGCATGGATGCTGGACTGTAA
Protein sequence

>Msa0171930

MHSCYSYSYGSTYIPFKLNRLTPRTGPVRAALSSPEKRTRKKKQVKDDDTLLENSLRFSFMEELMNRARNRDSTGVSQVMYDMIAAGLSPGPRSFHGLVVSYALNGDEQAAMDSLRRELGAGLRPIHETFVALVRLFGSKGHSTKGLEILGAMENLNYDIRHAWIILIEELVRNKHLEDANKVFLKGAKGGLRATDEVYDLLIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFTTFENMEYGEDYMKPDTETYNWVIQAYTRADSYDRVQDVAELLGMMVEDHKRVQPNVKTHALLVECFTKYCVVREAIRHFRALKNFEGGTKILHMDGNHGDPLSLYLRALCREGRIIDMLEALEAMANDNQKIPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYVEEGGLTGERKRWVPRSGKTPLDPDADGFIYSNPMETSFKQRCLEEKKVYHKKLLKKLQYEGIVALGDGASESDYVRVIEWLKKIIKGPEQNALKPKAASKMLVNELKEELEAQGLPIDGTRNVLYQRVQKARRINQSRGRPLWVPPVEEEEEVVDSLSVVDEELDALISRIKLEEGNTEYWKRRFLGEGLNGDNGNAMDEGESESPDVQDYIDVVGDDAKEAEDDEADEDEEEEVEQVEEEVAPVENQDVERIKEKEVESKKPLQMIGVQLLKDSDEPSATSKKSRRRRSRRNMVEDDADDDWFPLDIFEAFKEMRNRRVFDVSDMYTLADAWGWTWERELKNKPPHRWSQEWEVDLAIKVMQKVIQLGGTPTIGDCAVILRAAITAPLPSAFLTILQTTHSLGYKFGRPLYDEVISLCLDLGELDAAVAVVADLETTGISVSDQTLDRVISAKQGIDNPSNDGMDAGL*