Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161530 | A0A396JPZ8 | 91.900 | 321 | 20 | 2 | 1 | 321 | 1 | 315 | 0.0 | 551 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022310 | Msa0161530 | 0.847923 | 8.502017e-60 | -8.615850e-47 |
| Msa0118000 | Msa0161530 | 0.810310 | 1.228482e-50 | -8.615850e-47 |
| Msa0161530 | Msa0164220 | 0.801072 | 1.070115e-48 | -8.615850e-47 |
| Msa0161530 | Msa0608200 | 0.829808 | 4.184787e-55 | -8.615850e-47 |
| Msa0161530 | Msa0648520 | 0.837750 | 4.324445e-57 | -8.615850e-47 |
| Msa0161530 | Msa0691050 | 0.835704 | 1.437198e-56 | -8.615850e-47 |
| Msa0161530 | Msa0743680 | 0.807853 | 4.126992e-50 | -8.615850e-47 |
| Msa0161530 | Msa0863800 | 0.815923 | 7.207273e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161530 | MtrunA17_Chr1g0175521 | 91.900 | 321 | 20 | 2 | 1 | 321 | 1 | 315 | 0.0 | 551 |
| Msa0161530 | MtrunA17_Chr7g0258791 | 49.552 | 335 | 125 | 12 | 12 | 321 | 23 | 338 | 5.55e-78 | 241 |
| Msa0161530 | MtrunA17_Chr7g0258801 | 49.401 | 334 | 131 | 10 | 12 | 321 | 23 | 342 | 2.61e-77 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161530 | AT2G42040.1 | 54.630 | 108 | 21 | 3 | 203 | 310 | 163 | 242 | 1.43e-21 | 92.8 |
Find 88 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATAGAAGGATCTAAATT+TGG | 0.138899 | 1_4:+37145679 | None:intergenic |
| GCACAAGAAGCAAGAAATTT+TGG | 0.142499 | 1_4:-37145330 | Msa0161530:intron |
| AAGAATGCGTTGTTTGATTT+TGG | 0.169330 | 1_4:-37143386 | Msa0161530:three_prime_UTR |
| TCTCTATGTGAGCATCATTT+AGG | 0.194755 | 1_4:-37143911 | Msa0161530:CDS |
| CTTCCTCTTCGTTTCTTTAG+AGG | 0.201417 | 1_4:+37144298 | None:intergenic |
| TATTATTAAATTTAAGATAT+TGG | 0.229930 | 1_4:-37143412 | Msa0161530:three_prime_UTR |
| GTTCTTGGTTGGTTTCTATC+TGG | 0.254125 | 1_4:+37145870 | None:intergenic |
| CTAAATTTGGGTTTAGATTT+CGG | 0.256077 | 1_4:+37145692 | None:intergenic |
| GGAGGTTCAGTTTGAGATAT+TGG | 0.256335 | 1_4:+37143815 | None:intergenic |
| CTCTCACTAAGATATGTTCT+TGG | 0.279403 | 1_4:+37145855 | None:intergenic |
| CTCTATGTGAGCATCATTTA+GGG | 0.282907 | 1_4:-37143910 | Msa0161530:CDS |
| GGTAAGAGGTGGTGCACTTA+TGG | 0.318134 | 1_4:-37144002 | Msa0161530:CDS |
| TCGCGGTGCAGTCGTGTTAA+TGG | 0.321151 | 1_4:-37143974 | Msa0161530:CDS |
| GCATGACAAGTGTAAGAAAT+AGG | 0.329001 | 1_4:-37143871 | Msa0161530:CDS |
| CTATAGAAGGATCTAAATTT+GGG | 0.347816 | 1_4:+37145680 | None:intergenic |
| TTACCTTGTTTATGACTAGA+AGG | 0.355956 | 1_4:+37144501 | None:intergenic |
| AAATTTCTTGCTTCTTGTGC+TGG | 0.356796 | 1_4:+37145333 | None:intergenic |
| GAAAAGCTAACCAAGTTTGA+TGG | 0.358390 | 1_4:-37143785 | Msa0161530:CDS |
| TGAGAGAAAGAAAGTGCATT+AGG | 0.387249 | 1_4:-37145838 | Msa0161530:five_prime_UTR |
| AGTACTAATCGCAAAATACT+AGG | 0.391185 | 1_4:-37143625 | Msa0161530:three_prime_UTR |
| TCATGAGTGCAAGAAAGTTT+TGG | 0.398524 | 1_4:+37145458 | None:intergenic |
| TGAACTTGCACTCACGTATA+AGG | 0.423080 | 1_4:+37143537 | None:intergenic |
| CTCTTCTTCGCGATAATCAT+CGG | 0.437633 | 1_4:+37143740 | None:intergenic |
| CACTAAGATATGTTCTTGGT+TGG | 0.444824 | 1_4:+37145859 | None:intergenic |
| CAGATCTCAACATGATCAAC+CGG | 0.459291 | 1_4:-37145523 | Msa0161530:CDS |
| TTATGACTAGAAGGCCTTGA+AGG | 0.462959 | 1_4:+37144510 | None:intergenic |
| GCGATCGATGAGTAGTTTGT+TGG | 0.464541 | 1_4:-37143693 | Msa0161530:CDS |
| ATTGTCTTCACCATCAAACT+TGG | 0.466393 | 1_4:+37143775 | None:intergenic |
| TATAGTCTCTTGCAAATATG+AGG | 0.466409 | 1_4:-37145571 | Msa0161530:exon |
| TACTGCACTGTTATCTCTCT+CGG | 0.470852 | 1_4:-37145429 | Msa0161530:CDS |
| GCGAAGAAGAGGATGAAGAT+TGG | 0.473786 | 1_4:-37143728 | Msa0161530:CDS |
| AGAGGGCATGTCAAGGAAGG+GGG | 0.481397 | 1_4:-37145045 | Msa0161530:CDS |
| TTTAGTTTCATAAACTAGAT+GGG | 0.482660 | 1_4:-37145756 | Msa0161530:five_prime_UTR |
| GGAAGATCATAAAGAAGAAG+AGG | 0.484016 | 1_4:-37144173 | Msa0161530:CDS |
| ACTTTCTTGCACTCATGACT+TGG | 0.484902 | 1_4:-37145453 | Msa0161530:CDS |
| GATCAACCGGTCACCGGTGG+TGG | 0.490122 | 1_4:-37145510 | Msa0161530:CDS |
| AAATCATCACAGCCGTTGGC+TGG | 0.492934 | 1_4:+37145362 | None:intergenic |
| ATCAACTACTCCCACCGATC+GGG | 0.492964 | 1_4:-37145388 | Msa0161530:CDS |
| TTTGTGTTGTAATTTCTTGC+GGG | 0.493711 | 1_4:-37143440 | Msa0161530:three_prime_UTR |
| GAGAGGGCATGTCAAGGAAG+GGG | 0.502321 | 1_4:-37145046 | Msa0161530:CDS |
| TGCAGTCGTGTTAATGGAAG+AGG | 0.503807 | 1_4:-37143968 | Msa0161530:CDS |
| GGGAGAGGGCATGTCAAGGA+AGG | 0.508157 | 1_4:-37145048 | Msa0161530:CDS |
| TAGAGAAACAAAACAAAAGA+AGG | 0.509554 | 1_4:-37144140 | Msa0161530:intron |
| AGTGTTATGATAGTAATGAA+TGG | 0.510545 | 1_4:-37144204 | Msa0161530:CDS |
| TCATTTATATAGATTGGAGA+TGG | 0.513170 | 1_4:-37144342 | Msa0161530:intron |
| CGATCGATGAGTAGTTTGTT+GGG | 0.513939 | 1_4:-37143692 | Msa0161530:CDS |
| CGATGATTATCGCGAAGAAG+AGG | 0.515105 | 1_4:-37143739 | Msa0161530:CDS |
| TCATAAAGAAGAAGAGGTAG+TGG | 0.518196 | 1_4:-37144167 | Msa0161530:CDS |
| TTGGCTGGTTTCCCGATCGG+TGG | 0.518762 | 1_4:+37145377 | None:intergenic |
| CCGTTGGCTGGTTTCCCGAT+CGG | 0.519531 | 1_4:+37145374 | None:intergenic |
| ATTTGTGTTGTAATTTCTTG+CGG | 0.519726 | 1_4:-37143441 | Msa0161530:three_prime_UTR |
| GTTGCACCACCACCGGTGAC+CGG | 0.532197 | 1_4:+37145504 | None:intergenic |
| TCATAAATAACAATAGACTT+TGG | 0.532209 | 1_4:+37145630 | None:intergenic |
| TGGCTGGTTTCCCGATCGGT+GGG | 0.543310 | 1_4:+37145378 | None:intergenic |
| AGCATCATTTAGGGAAAGGA+AGG | 0.554136 | 1_4:-37143901 | Msa0161530:CDS |
| TGTGATTTGCAGGTAGAAGA+TGG | 0.559441 | 1_4:-37145069 | Msa0161530:intron |
| GGAGAGGGCATGTCAAGGAA+GGG | 0.559602 | 1_4:-37145047 | Msa0161530:CDS |
| TAGTAATGAATGGGATGAAG+AGG | 0.560430 | 1_4:-37144194 | Msa0161530:CDS |
| GTACTAATCGCAAAATACTA+GGG | 0.561295 | 1_4:-37143624 | Msa0161530:three_prime_UTR |
| GTGTTATGATAGTAATGAAT+GGG | 0.561410 | 1_4:-37144203 | Msa0161530:CDS |
| TGTAAGAAATAGGTCTATTG+TGG | 0.562415 | 1_4:-37143861 | Msa0161530:CDS |
| TCGTTGAGTTGCACCACCAC+CGG | 0.564805 | 1_4:+37145497 | None:intergenic |
| TGTGAGCATCATTTAGGGAA+AGG | 0.571914 | 1_4:-37143905 | Msa0161530:CDS |
| GATCAACTACTCCCACCGAT+CGG | 0.572727 | 1_4:-37145389 | Msa0161530:CDS |
| GAGTGCACAAACTTCAACTG+AGG | 0.575039 | 1_4:-37144541 | Msa0161530:CDS |
| CAACATGATCAACCGGTCAC+CGG | 0.577249 | 1_4:-37145516 | Msa0161530:CDS |
| GTGATTTGCAGGTAGAAGAT+GGG | 0.581315 | 1_4:-37145068 | Msa0161530:intron |
| AGTAGTTGATCAGACGGCTG+AGG | 0.594515 | 1_4:+37145401 | None:intergenic |
| TAAGAAATCATCACAGCCGT+TGG | 0.596090 | 1_4:+37145358 | None:intergenic |
| TTGCAGGTAGAAGATGGGAG+AGG | 0.602099 | 1_4:-37145063 | Msa0161530:intron |
| GAAGAGGATGAAGATTGGAA+TGG | 0.603128 | 1_4:-37143723 | Msa0161530:CDS |
| GTGTTAATGGAAGAGGATGG+AGG | 0.605411 | 1_4:-37143961 | Msa0161530:CDS |
| GTGCACTTATGGAAGGTTCG+CGG | 0.606666 | 1_4:-37143991 | Msa0161530:CDS |
| TTTCCTCTAAAGAAACGAAG+AGG | 0.607920 | 1_4:-37144301 | Msa0161530:CDS |
| ATAACAATAGACTTTGGAGA+AGG | 0.607975 | 1_4:+37145636 | None:intergenic |
| AGAGAATAACCGACTAGTGT+TGG | 0.608366 | 1_4:+37143929 | None:intergenic |
| TGCAGGTAGAAGATGGGAGA+GGG | 0.613399 | 1_4:-37145062 | Msa0161530:intron |
| AGATGGGAGAGGGCATGTCA+AGG | 0.620023 | 1_4:-37145052 | Msa0161530:CDS |
| AGAGGTGGTGCACTTATGGA+AGG | 0.620926 | 1_4:-37143998 | Msa0161530:CDS |
| GGTGGGAGTAGTTGATCAGA+CGG | 0.626321 | 1_4:+37145395 | None:intergenic |
| ACAAACAATCAGTGATCTCG+TGG | 0.632907 | 1_4:-37143669 | Msa0161530:CDS |
| GACAAAAGGGTAATGATACC+AGG | 0.635672 | 1_4:-37145023 | Msa0161530:intron |
| CATGATCAACCGGTCACCGG+TGG | 0.646362 | 1_4:-37145513 | Msa0161530:CDS |
| TGTTGTCAACCAACACTAGT+CGG | 0.655661 | 1_4:-37143938 | Msa0161530:CDS |
| AGGCCTTCTAGTCATAAACA+AGG | 0.659693 | 1_4:-37144504 | Msa0161530:intron |
| CCGATCGGGAAACCAGCCAA+CGG | 0.672458 | 1_4:-37145374 | Msa0161530:CDS |
| GTCGTGTTAATGGAAGAGGA+TGG | 0.680449 | 1_4:-37143964 | Msa0161530:CDS |
| ATAGATTGGAGATGGAACGA+CGG | 0.693875 | 1_4:-37144334 | Msa0161530:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTAATTTTTTTTTT+AGG | - | chr1_4:37143980-37143999 | Msa0161530:CDS | 0.0% |
| !! | TATTAATGTGTTATATTTAT+TGG | - | chr1_4:37144777-37144796 | Msa0161530:intron | 10.0% |
| !! | TAAAATCAAAATAAAAAAGA+AGG | - | chr1_4:37145230-37145249 | Msa0161530:intron | 10.0% |
| !!! | ATTTTATTTCACATTCATAA+AGG | - | chr1_4:37144068-37144087 | Msa0161530:intron | 15.0% |
| !!! | TTTTATTTCACATTCATAAA+GGG | - | chr1_4:37144069-37144088 | Msa0161530:intron | 15.0% |
| !! | AATATCTCATAGTAAAAAAA+AGG | - | chr1_4:37144294-37144313 | Msa0161530:CDS | 15.0% |
| !!! | GATTTTATAAACATCATATA+AGG | + | chr1_4:37145217-37145236 | None:intergenic | 15.0% |
| !!! | TTTTAGTTTCATAAACTAGA+TGG | - | chr1_4:37143496-37143515 | Msa0161530:three_prime_UTR | 20.0% |
| !!! | TTTAGTTTCATAAACTAGAT+GGG | - | chr1_4:37143497-37143516 | Msa0161530:three_prime_UTR | 20.0% |
| !! | TCATAAATAACAATAGACTT+TGG | + | chr1_4:37143626-37143645 | None:intergenic | 20.0% |
| !! | TTTATTTCACATTCATAAAG+GGG | - | chr1_4:37144070-37144089 | Msa0161530:intron | 20.0% |
| !!! | AATATTTTTGAAAGACACAA+AGG | - | chr1_4:37144094-37144113 | Msa0161530:intron | 20.0% |
| !!! | ATATTTTTGAAAGACACAAA+GGG | - | chr1_4:37144095-37144114 | Msa0161530:intron | 20.0% |
| !!! | TTTTTACTATGAGATATTCA+TGG | + | chr1_4:37144292-37144311 | None:intergenic | 20.0% |
| !! | AAAAAAGATGTGATGTAAAT+GGG | + | chr1_4:37144573-37144592 | None:intergenic | 20.0% |
| !! | AAAAAAAGATGTGATGTAAA+TGG | + | chr1_4:37144574-37144593 | None:intergenic | 20.0% |
| !! | TTGTGTGATATATATATTTG+TGG | - | chr1_4:37144653-37144672 | Msa0161530:intron | 20.0% |
| !!! | CTATTGTCATTTATATAGAT+TGG | - | chr1_4:37144905-37144924 | Msa0161530:intron | 20.0% |
| !! | AAAATAAAAAAGAAGGTAAG+AGG | - | chr1_4:37145237-37145256 | Msa0161530:intron | 20.0% |
| !! | CTAAATTTGGGTTTAGATTT+CGG | + | chr1_4:37143564-37143583 | None:intergenic | 25.0% |
| ! | CTATAGAAGGATCTAAATTT+GGG | + | chr1_4:37143576-37143595 | None:intergenic | 25.0% |
| ! | ACTATAGAAGGATCTAAATT+TGG | + | chr1_4:37143577-37143596 | None:intergenic | 25.0% |
| ! | GAAAAATCACATACTATAGA+AGG | + | chr1_4:37143589-37143608 | None:intergenic | 25.0% |
| !!! | TATTTTTGAAAGACACAAAG+GGG | - | chr1_4:37144096-37144115 | Msa0161530:intron | 25.0% |
| !! | ACCAACCATATTAATTTTAG+TGG | - | chr1_4:37144130-37144149 | Msa0161530:intron | 25.0% |
| ! | TCCACTAAAATTAATATGGT+TGG | + | chr1_4:37144134-37144153 | None:intergenic | 25.0% |
| ! | AGGATCCACTAAAATTAATA+TGG | + | chr1_4:37144138-37144157 | None:intergenic | 25.0% |
| ! | CACAAAAAAGAAACATACAT+AGG | + | chr1_4:37144158-37144177 | None:intergenic | 25.0% |
| ! | TAATTTCATGTGTCTTTCTT+TGG | + | chr1_4:37144261-37144280 | None:intergenic | 25.0% |
| ! | GTAAAAAAAAGGTGAAAACA+TGG | - | chr1_4:37144305-37144324 | Msa0161530:CDS | 25.0% |
| !!! | AACTATATGTTTTTTCATGC+CGG | + | chr1_4:37144351-37144370 | None:intergenic | 25.0% |
| !!! | AGTTTTGAGAAAAAAACGAT+CGG | + | chr1_4:37144484-37144503 | None:intergenic | 25.0% |
| ! | AAAAAGATGTGATGTAAATG+GGG | + | chr1_4:37144572-37144591 | None:intergenic | 25.0% |
| ! | ACTTCAAGGTAAAAAAGAAA+AGG | + | chr1_4:37144622-37144641 | None:intergenic | 25.0% |
| ! | TCATTTATATAGATTGGAGA+TGG | - | chr1_4:37144911-37144930 | Msa0161530:intron | 25.0% |
| ! | AGTGTTATGATAGTAATGAA+TGG | - | chr1_4:37145049-37145068 | Msa0161530:CDS | 25.0% |
| ! | GTGTTATGATAGTAATGAAT+GGG | - | chr1_4:37145050-37145069 | Msa0161530:CDS | 25.0% |
| ! | TAGAGAAACAAAACAAAAGA+AGG | - | chr1_4:37145113-37145132 | Msa0161530:intron | 25.0% |
| ! | ATTTGTGTTGTAATTTCTTG+CGG | - | chr1_4:37145812-37145831 | Msa0161530:five_prime_UTR | 25.0% |
| ! | ATAACAATAGACTTTGGAGA+AGG | + | chr1_4:37143620-37143639 | None:intergenic | 30.0% |
| TATAGTCTCTTGCAAATATG+AGG | - | chr1_4:37143682-37143701 | Msa0161530:CDS | 30.0% | |
| TCTAACACTTTGTAAAAGGT+TGG | + | chr1_4:37144037-37144056 | None:intergenic | 30.0% | |
| CCAATCTAACACTTTGTAAA+AGG | + | chr1_4:37144041-37144060 | None:intergenic | 30.0% | |
| !! | CCTTTTACAAAGTGTTAGAT+TGG | - | chr1_4:37144038-37144057 | Msa0161530:intron | 30.0% |
| TTACTATGAGATATTCATGG+AGG | + | chr1_4:37144289-37144308 | None:intergenic | 30.0% | |
| AAAAGATGTGATGTAAATGG+GGG | + | chr1_4:37144571-37144590 | None:intergenic | 30.0% | |
| !!! | CTTTTTTACCTTGAAGTGTA+TGG | - | chr1_4:37144625-37144644 | Msa0161530:intron | 30.0% |
| !!! | GATGTGTCTTTTTTGTTAGT+AGG | - | chr1_4:37144675-37144694 | Msa0161530:intron | 30.0% |
| !!! | GTCTTTTTTGTTAGTAGGAA+TGG | - | chr1_4:37144680-37144699 | Msa0161530:intron | 30.0% |
| ! | TTACCTTGTTTATGACTAGA+AGG | + | chr1_4:37144755-37144774 | None:intergenic | 30.0% |
| ATAAAAAAGAAGGTAAGAGG+TGG | - | chr1_4:37145240-37145259 | Msa0161530:intron | 30.0% | |
| TGTAAGAAATAGGTCTATTG+TGG | - | chr1_4:37145392-37145411 | Msa0161530:CDS | 30.0% | |
| AGTACTAATCGCAAAATACT+AGG | - | chr1_4:37145628-37145647 | Msa0161530:five_prime_UTR | 30.0% | |
| GTACTAATCGCAAAATACTA+GGG | - | chr1_4:37145629-37145648 | Msa0161530:five_prime_UTR | 30.0% | |
| TTTGTGTTGTAATTTCTTGC+GGG | - | chr1_4:37145813-37145832 | Msa0161530:five_prime_UTR | 30.0% | |
| !! | AAGAATGCGTTGTTTGATTT+TGG | - | chr1_4:37145867-37145886 | Msa0161530:five_prime_UTR | 30.0% |
| CACTAAGATATGTTCTTGGT+TGG | + | chr1_4:37143397-37143416 | None:intergenic | 35.0% | |
| CTCTCACTAAGATATGTTCT+TGG | + | chr1_4:37143401-37143420 | None:intergenic | 35.0% | |
| ! | TGAGAGAAAGAAAGTGCATT+AGG | - | chr1_4:37143415-37143434 | Msa0161530:three_prime_UTR | 35.0% |
| ! | AGAGAGTAGAGTAAGCTTTT+CGG | + | chr1_4:37143710-37143729 | None:intergenic | 35.0% |
| ! | TCATGAGTGCAAGAAAGTTT+TGG | + | chr1_4:37143798-37143817 | None:intergenic | 35.0% |
| AAATTTCTTGCTTCTTGTGC+TGG | + | chr1_4:37143923-37143942 | None:intergenic | 35.0% | |
| ! | GCACAAGAAGCAAGAAATTT+TGG | - | chr1_4:37143923-37143942 | Msa0161530:CDS | 35.0% |
| !!! | TGTCTTTCTTTGGTTTTACC+TGG | + | chr1_4:37144251-37144270 | None:intergenic | 35.0% |
| GACCCATAACTTGATTTAAC+CGG | - | chr1_4:37144329-37144348 | Msa0161530:CDS | 35.0% | |
| ! | TGCCGGTTAAATCAAGTTAT+GGG | + | chr1_4:37144334-37144353 | None:intergenic | 35.0% |
| ! | ATGCCGGTTAAATCAAGTTA+TGG | + | chr1_4:37144335-37144354 | None:intergenic | 35.0% |
| ! | AACGATCGGTTTAGATAAGA+GGG | + | chr1_4:37144470-37144489 | None:intergenic | 35.0% |
| ! | AAACGATCGGTTTAGATAAG+AGG | + | chr1_4:37144471-37144490 | None:intergenic | 35.0% |
| CAATTACACCATACACTTCA+AGG | + | chr1_4:37144636-37144655 | None:intergenic | 35.0% | |
| ! | TTTCCTCTAAAGAAACGAAG+AGG | - | chr1_4:37144952-37144971 | Msa0161530:intron | 35.0% |
| TAGTAATGAATGGGATGAAG+AGG | - | chr1_4:37145059-37145078 | Msa0161530:CDS | 35.0% | |
| GGAAGATCATAAAGAAGAAG+AGG | - | chr1_4:37145080-37145099 | Msa0161530:intron | 35.0% | |
| TCATAAAGAAGAAGAGGTAG+TGG | - | chr1_4:37145086-37145105 | Msa0161530:intron | 35.0% | |
| TCTCTATGTGAGCATCATTT+AGG | - | chr1_4:37145342-37145361 | Msa0161530:CDS | 35.0% | |
| CTCTATGTGAGCATCATTTA+GGG | - | chr1_4:37145343-37145362 | Msa0161530:CDS | 35.0% | |
| GCATGACAAGTGTAAGAAAT+AGG | - | chr1_4:37145382-37145401 | Msa0161530:CDS | 35.0% | |
| !!! | TTGGTTAGCTTTTCAAGAGA+TGG | + | chr1_4:37145462-37145481 | None:intergenic | 35.0% |
| GAAAAGCTAACCAAGTTTGA+TGG | - | chr1_4:37145468-37145487 | Msa0161530:CDS | 35.0% | |
| ATTGTCTTCACCATCAAACT+TGG | + | chr1_4:37145481-37145500 | None:intergenic | 35.0% | |
| !! | GTTCTTGGTTGGTTTCTATC+TGG | + | chr1_4:37143386-37143405 | None:intergenic | 40.0% |
| CAGATCTCAACATGATCAAC+CGG | - | chr1_4:37143730-37143749 | Msa0161530:CDS | 40.0% | |
| ACTTTCTTGCACTCATGACT+TGG | - | chr1_4:37143800-37143819 | Msa0161530:CDS | 40.0% | |
| TACTGCACTGTTATCTCTCT+CGG | - | chr1_4:37143824-37143843 | Msa0161530:CDS | 40.0% | |
| TAAGAAATCATCACAGCCGT+TGG | + | chr1_4:37143898-37143917 | None:intergenic | 40.0% | |
| ! | TGTGATTTGCAGGTAGAAGA+TGG | - | chr1_4:37144184-37144203 | Msa0161530:CDS | 40.0% |
| ! | GTGATTTGCAGGTAGAAGAT+GGG | - | chr1_4:37144185-37144204 | Msa0161530:CDS | 40.0% |
| GACAAAAGGGTAATGATACC+AGG | - | chr1_4:37144230-37144249 | Msa0161530:CDS | 40.0% | |
| TTATGACTAGAAGGCCTTGA+AGG | + | chr1_4:37144746-37144765 | None:intergenic | 40.0% | |
| AGGCCTTCTAGTCATAAACA+AGG | - | chr1_4:37144749-37144768 | Msa0161530:intron | 40.0% | |
| ATAGATTGGAGATGGAACGA+CGG | - | chr1_4:37144919-37144938 | Msa0161530:intron | 40.0% | |
| CTTCCTCTTCGTTTCTTTAG+AGG | + | chr1_4:37144958-37144977 | None:intergenic | 40.0% | |
| TGTTGTCAACCAACACTAGT+CGG | - | chr1_4:37145315-37145334 | Msa0161530:intron | 40.0% | |
| AGAGAATAACCGACTAGTGT+TGG | + | chr1_4:37145327-37145346 | None:intergenic | 40.0% | |
| TGTGAGCATCATTTAGGGAA+AGG | - | chr1_4:37145348-37145367 | Msa0161530:CDS | 40.0% | |
| AGCATCATTTAGGGAAAGGA+AGG | - | chr1_4:37145352-37145371 | Msa0161530:CDS | 40.0% | |
| ! | GGAGGTTCAGTTTGAGATAT+TGG | + | chr1_4:37145441-37145460 | None:intergenic | 40.0% |
| !!! | GTTAGCTTTTCAAGAGATGG+AGG | + | chr1_4:37145459-37145478 | None:intergenic | 40.0% |
| CTCTTCTTCGCGATAATCAT+CGG | + | chr1_4:37145516-37145535 | None:intergenic | 40.0% | |
| GAAGAGGATGAAGATTGGAA+TGG | - | chr1_4:37145530-37145549 | Msa0161530:CDS | 40.0% | |
| !! | CGATCGATGAGTAGTTTGTT+GGG | - | chr1_4:37145561-37145580 | Msa0161530:exon | 40.0% |
| ACAAACAATCAGTGATCTCG+TGG | - | chr1_4:37145584-37145603 | Msa0161530:five_prime_UTR | 40.0% | |
| TGAACTTGCACTCACGTATA+AGG | + | chr1_4:37145719-37145738 | None:intergenic | 40.0% | |
| CAGCTAAAGGGCAAATTGGT+AGG | + | chr1_4:37144512-37144531 | None:intergenic | 45.0% | |
| TGTGCAGCTAAAGGGCAAAT+TGG | + | chr1_4:37144516-37144535 | None:intergenic | 45.0% | |
| TACCTGCTTGTGCAGCTAAA+GGG | + | chr1_4:37144524-37144543 | None:intergenic | 45.0% | |
| GAGTGCACAAACTTCAACTG+AGG | - | chr1_4:37144712-37144731 | Msa0161530:intron | 45.0% | |
| ! | CTGAGGTTTTCTCTCCTTCA+AGG | - | chr1_4:37144729-37144748 | Msa0161530:intron | 45.0% |
| TGCAGTCGTGTTAATGGAAG+AGG | - | chr1_4:37145285-37145304 | Msa0161530:intron | 45.0% | |
| GTCGTGTTAATGGAAGAGGA+TGG | - | chr1_4:37145289-37145308 | Msa0161530:intron | 45.0% | |
| GTGTTAATGGAAGAGGATGG+AGG | - | chr1_4:37145292-37145311 | Msa0161530:intron | 45.0% | |
| CGATGATTATCGCGAAGAAG+AGG | - | chr1_4:37145514-37145533 | Msa0161530:CDS | 45.0% | |
| GCGAAGAAGAGGATGAAGAT+TGG | - | chr1_4:37145525-37145544 | Msa0161530:CDS | 45.0% | |
| ! | GCGATCGATGAGTAGTTTGT+TGG | - | chr1_4:37145560-37145579 | Msa0161530:exon | 45.0% |
| !!! | TATTTTTTTATGAAATTATA+AGG | - | chr1_4:37144375-37144394 | Msa0161530:intron | 5.0% |
| !!! | TATTATTAAATTTAAGATAT+TGG | - | chr1_4:37145841-37145860 | Msa0161530:five_prime_UTR | 5.0% |
| CAACATGATCAACCGGTCAC+CGG | - | chr1_4:37143737-37143756 | Msa0161530:CDS | 50.0% | |
| AGTAGTTGATCAGACGGCTG+AGG | + | chr1_4:37143855-37143874 | None:intergenic | 50.0% | |
| GGTGGGAGTAGTTGATCAGA+CGG | + | chr1_4:37143861-37143880 | None:intergenic | 50.0% | |
| GATCAACTACTCCCACCGAT+CGG | - | chr1_4:37143864-37143883 | Msa0161530:CDS | 50.0% | |
| ATCAACTACTCCCACCGATC+GGG | - | chr1_4:37143865-37143884 | Msa0161530:CDS | 50.0% | |
| AAATCATCACAGCCGTTGGC+TGG | + | chr1_4:37143894-37143913 | None:intergenic | 50.0% | |
| TTGCAGGTAGAAGATGGGAG+AGG | - | chr1_4:37144190-37144209 | Msa0161530:CDS | 50.0% | |
| TGCAGGTAGAAGATGGGAGA+GGG | - | chr1_4:37144191-37144210 | Msa0161530:CDS | 50.0% | |
| TGTCAAGGAAGGGGGACAAA+AGG | - | chr1_4:37144216-37144235 | Msa0161530:CDS | 50.0% | |
| GTCAAGGAAGGGGGACAAAA+GGG | - | chr1_4:37144217-37144236 | Msa0161530:CDS | 50.0% | |
| CTACCTGCTTGTGCAGCTAA+AGG | + | chr1_4:37144525-37144544 | None:intergenic | 50.0% | |
| GATCGAGTGGAACCAAATGC+TGG | - | chr1_4:37144544-37144563 | Msa0161530:CDS | 50.0% | |
| GTAAATGGGGGACCAGCATT+TGG | + | chr1_4:37144559-37144578 | None:intergenic | 50.0% | |
| GGTAAGAGGTGGTGCACTTA+TGG | - | chr1_4:37145251-37145270 | Msa0161530:intron | 50.0% | |
| AGAGGTGGTGCACTTATGGA+AGG | - | chr1_4:37145255-37145274 | Msa0161530:intron | 50.0% | |
| GTGCACTTATGGAAGGTTCG+CGG | - | chr1_4:37145262-37145281 | Msa0161530:intron | 50.0% | |
| ! | TCGTTGAGTTGCACCACCAC+CGG | + | chr1_4:37143759-37143778 | None:intergenic | 55.0% |
| ! | TGTGCGTGCGTGTGATTTGC+AGG | - | chr1_4:37144174-37144193 | Msa0161530:CDS | 55.0% |
| ! | AGATGGGAGAGGGCATGTCA+AGG | - | chr1_4:37144201-37144220 | Msa0161530:CDS | 55.0% |
| ! | GGAGAGGGCATGTCAAGGAA+GGG | - | chr1_4:37144206-37144225 | Msa0161530:CDS | 55.0% |
| ! | GAGAGGGCATGTCAAGGAAG+GGG | - | chr1_4:37144207-37144226 | Msa0161530:CDS | 55.0% |
| ! | AGAGGGCATGTCAAGGAAGG+GGG | - | chr1_4:37144208-37144227 | Msa0161530:CDS | 55.0% |
| TGCCCTTTAGCTGCACAAGC+AGG | - | chr1_4:37144519-37144538 | Msa0161530:CDS | 55.0% | |
| GCACAAGCAGGTAGATCGAG+TGG | - | chr1_4:37144531-37144550 | Msa0161530:CDS | 55.0% | |
| TCGCGGTGCAGTCGTGTTAA+TGG | - | chr1_4:37145279-37145298 | Msa0161530:intron | 55.0% | |
| CATGATCAACCGGTCACCGG+TGG | - | chr1_4:37143740-37143759 | Msa0161530:CDS | 60.0% | |
| !! | TGGCTGGTTTCCCGATCGGT+GGG | + | chr1_4:37143878-37143897 | None:intergenic | 60.0% |
| !! | TTGGCTGGTTTCCCGATCGG+TGG | + | chr1_4:37143879-37143898 | None:intergenic | 60.0% |
| !! | CCGTTGGCTGGTTTCCCGAT+CGG | + | chr1_4:37143882-37143901 | None:intergenic | 60.0% |
| CCGATCGGGAAACCAGCCAA+CGG | - | chr1_4:37143879-37143898 | Msa0161530:CDS | 60.0% | |
| ! | GGGAGAGGGCATGTCAAGGA+AGG | - | chr1_4:37144205-37144224 | Msa0161530:CDS | 60.0% |
| GATCAACCGGTCACCGGTGG+TGG | - | chr1_4:37143743-37143762 | Msa0161530:CDS | 65.0% | |
| GTTGCACCACCACCGGTGAC+CGG | + | chr1_4:37143752-37143771 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 37143356 | 37145919 | 37143356 | ID=Msa0161530;Name=Msa0161530 |
| chr1_4 | mRNA | 37143356 | 37145919 | 37143356 | ID=Msa0161530-mRNA-1;Parent=Msa0161530;Name=Msa0161530-mRNA-1;_AED=0.11;_eAED=0.11;_QI=343|1|1|1|1|1|5|293|321 |
| chr1_4 | exon | 37143356 | 37144026 | 37143356 | ID=Msa0161530-mRNA-1:exon:10877;Parent=Msa0161530-mRNA-1 |
| chr1_4 | exon | 37144141 | 37144352 | 37144141 | ID=Msa0161530-mRNA-1:exon:10876;Parent=Msa0161530-mRNA-1 |
| chr1_4 | exon | 37144505 | 37144578 | 37144505 | ID=Msa0161530-mRNA-1:exon:10875;Parent=Msa0161530-mRNA-1 |
| chr1_4 | exon | 37145024 | 37145079 | 37145024 | ID=Msa0161530-mRNA-1:exon:10874;Parent=Msa0161530-mRNA-1 |
| chr1_4 | exon | 37145331 | 37145919 | 37145331 | ID=Msa0161530-mRNA-1:exon:10873;Parent=Msa0161530-mRNA-1 |
| chr1_4 | five_prime_UTR | 37145577 | 37145919 | 37145577 | ID=Msa0161530-mRNA-1:five_prime_utr;Parent=Msa0161530-mRNA-1 |
| chr1_4 | CDS | 37145331 | 37145576 | 37145331 | ID=Msa0161530-mRNA-1:cds;Parent=Msa0161530-mRNA-1 |
| chr1_4 | CDS | 37145024 | 37145079 | 37145024 | ID=Msa0161530-mRNA-1:cds;Parent=Msa0161530-mRNA-1 |
| chr1_4 | CDS | 37144505 | 37144578 | 37144505 | ID=Msa0161530-mRNA-1:cds;Parent=Msa0161530-mRNA-1 |
| chr1_4 | CDS | 37144141 | 37144352 | 37144141 | ID=Msa0161530-mRNA-1:cds;Parent=Msa0161530-mRNA-1 |
| chr1_4 | CDS | 37143649 | 37144026 | 37143649 | ID=Msa0161530-mRNA-1:cds;Parent=Msa0161530-mRNA-1 |
| chr1_4 | three_prime_UTR | 37143356 | 37143648 | 37143356 | ID=Msa0161530-mRNA-1:three_prime_utr;Parent=Msa0161530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
