Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164220 | XP_024632783.1 | 90.031 | 321 | 27 | 1 | 1 | 321 | 1 | 316 | 0.0 | 551 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164220 | A0A396JPZ8 | 89.720 | 321 | 27 | 2 | 1 | 321 | 1 | 315 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039250 | Msa0164220 | 0.810671 | 1.026465e-50 | -8.615850e-47 |
| Msa0070430 | Msa0164220 | 0.806465 | 8.119357e-50 | -8.615850e-47 |
| Msa0133720 | Msa0164220 | 0.818447 | 1.951323e-52 | -8.615850e-47 |
| Msa0133820 | Msa0164220 | 0.808044 | 3.757520e-50 | -8.615850e-47 |
| Msa0152840 | Msa0164220 | 0.801556 | 8.517563e-49 | -8.615850e-47 |
| Msa0161530 | Msa0164220 | 0.801072 | 1.070115e-48 | -8.615850e-47 |
| Msa0164220 | Msa0171850 | 0.803760 | 2.988492e-49 | -8.615850e-47 |
| Msa0164220 | Msa0198520 | 0.812201 | 4.775890e-51 | -8.615850e-47 |
| Msa0164220 | Msa0198530 | 0.801869 | 7.347084e-49 | -8.615850e-47 |
| Msa0164220 | Msa0337510 | 0.804030 | 2.627312e-49 | -8.615850e-47 |
| Msa0164220 | Msa0346990 | 0.805945 | 1.044529e-49 | -8.615850e-47 |
| Msa0164220 | Msa0431770 | 0.853981 | 1.667957e-61 | -8.615850e-47 |
| Msa0164220 | Msa0487780 | 0.806770 | 7.001534e-50 | -8.615850e-47 |
| Msa0164220 | Msa0619180 | 0.803797 | 2.936328e-49 | -8.615850e-47 |
| Msa0164220 | Msa0658480 | 0.804069 | 2.578539e-49 | -8.615850e-47 |
| Msa0164220 | Msa0940830 | 0.804846 | 1.775391e-49 | -8.615850e-47 |
| Msa0164220 | Msa1004420 | 0.815098 | 1.100134e-51 | -8.615850e-47 |
| Msa0164220 | Msa1030930 | 0.804451 | 2.146597e-49 | -8.615850e-47 |
| Msa0164220 | Msa1198880 | 0.804611 | 1.987759e-49 | -8.615850e-47 |
| Msa0164220 | Msa1199290 | 0.807326 | 5.339614e-50 | -8.615850e-47 |
| Msa0164220 | Msa1201830 | 0.814247 | 1.698242e-51 | -8.615850e-47 |
| Msa0164220 | Msa1223330 | 0.809523 | 1.814338e-50 | -8.615850e-47 |
| Msa0164220 | Msa1294840 | 0.803703 | 3.071283e-49 | -8.615850e-47 |
| Msa0164220 | Msa1294960 | 0.823728 | 1.184682e-53 | -8.615850e-47 |
| Msa0164220 | Msa1323990 | 0.816549 | 5.222091e-52 | -8.615850e-47 |
| Msa0164220 | Msa1390230 | 0.802491 | 5.471986e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164220 | MtrunA17_Chr1g0175521 | 89.720 | 321 | 27 | 2 | 1 | 321 | 1 | 315 | 0.0 | 545 |
| Msa0164220 | MtrunA17_Chr7g0258791 | 50.000 | 334 | 125 | 11 | 12 | 321 | 23 | 338 | 2.47e-80 | 247 |
| Msa0164220 | MtrunA17_Chr7g0258801 | 49.701 | 334 | 130 | 10 | 12 | 321 | 23 | 342 | 1.60e-77 | 240 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164220 | AT2G42040.1 | 54.630 | 108 | 21 | 3 | 203 | 310 | 163 | 242 | 1.29e-21 | 92.8 |
Find 90 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATACAAAGGATCTAAATT+TGG | 0.129110 | 1_4:-43334948 | None:intergenic |
| GCACAAGAAGCAAGAAATTT+TGG | 0.142499 | 1_4:+43335292 | Msa0164220:CDS |
| AAGAATGCGTTGTTTGATTT+TGG | 0.169330 | 1_4:+43337274 | Msa0164220:three_prime_UTR |
| TCTCTATGTGAGCATCATTT+AGG | 0.194755 | 1_4:+43336749 | Msa0164220:CDS |
| CTTCCTCTCCGTTTCTTTAG+AGG | 0.209046 | 1_4:-43336365 | None:intergenic |
| GTTCTTGGTTGGTTTCTATC+TGG | 0.254125 | 1_4:-43334762 | None:intergenic |
| CTAAATTTGGGTTTAGATTT+CGG | 0.256077 | 1_4:-43334935 | None:intergenic |
| GGAGGTTCAGTTTGAGATAT+TGG | 0.256335 | 1_4:-43336845 | None:intergenic |
| TTGCTTCTTGTGCTGGCTTA+AGG | 0.272517 | 1_4:-43335282 | None:intergenic |
| CTCTCACTAAGATATGTTCT+TGG | 0.279403 | 1_4:-43334777 | None:intergenic |
| CTCTATGTGAGCATCATTTA+GGG | 0.282907 | 1_4:+43336750 | Msa0164220:CDS |
| TATTATTAAATATTAGATAT+TGG | 0.301453 | 1_4:+43337248 | Msa0164220:three_prime_UTR |
| GGTAAGAGGTGGTGCACTTA+TGG | 0.318134 | 1_4:+43336658 | Msa0164220:CDS |
| TCGCGGTGCAGTCGTGTTAA+TGG | 0.321151 | 1_4:+43336686 | Msa0164220:CDS |
| GCATGACAAGTGTAAGAAAT+AGG | 0.329001 | 1_4:+43336789 | Msa0164220:CDS |
| CATACAAAGGATCTAAATTT+GGG | 0.333566 | 1_4:-43334947 | None:intergenic |
| TTACCTTGTTTATGACTAGA+AGG | 0.355956 | 1_4:-43336208 | None:intergenic |
| AAATTTCTTGCTTCTTGTGC+TGG | 0.356796 | 1_4:-43335289 | None:intergenic |
| GAAAAGCTAACCAAGTTTGA+TGG | 0.358390 | 1_4:+43336875 | Msa0164220:CDS |
| TGAGAGAAAGAAAGTGCATT+AGG | 0.387249 | 1_4:+43334794 | Msa0164220:five_prime_UTR |
| AGTACTAATCGCAAAATACT+AGG | 0.391185 | 1_4:+43337035 | Msa0164220:three_prime_UTR |
| TGAACTTGCACTCACGTATA+AGG | 0.423080 | 1_4:-43337123 | None:intergenic |
| TATTTCATGTACTTCAGATT+GGG | 0.439552 | 1_4:+43337075 | Msa0164220:three_prime_UTR |
| CTCTTCTTCGCGATAACCAT+CGG | 0.442228 | 1_4:-43336920 | None:intergenic |
| CACTAAGATATGTTCTTGGT+TGG | 0.444824 | 1_4:-43334773 | None:intergenic |
| TCATGAGTGCAAGAATGTTT+TGG | 0.453295 | 1_4:-43335164 | None:intergenic |
| TTATGACTAGAAGGCCTTGA+AGG | 0.462959 | 1_4:-43336199 | None:intergenic |
| GCGATCGATGAGTAGTTTGT+TGG | 0.464541 | 1_4:+43336967 | Msa0164220:CDS |
| CAGATCTAAACATGATCAAC+CGG | 0.465764 | 1_4:+43335099 | Msa0164220:CDS |
| ATTGTCTTCACCATCAAACT+TGG | 0.466393 | 1_4:-43336885 | None:intergenic |
| ATATTTCATGTACTTCAGAT+TGG | 0.466810 | 1_4:+43337074 | Msa0164220:three_prime_UTR |
| GCGAAGAAGAGGATGAAGAT+TGG | 0.473786 | 1_4:+43336932 | Msa0164220:CDS |
| CTCATAAATAACAATAGACT+TGG | 0.478778 | 1_4:-43334993 | None:intergenic |
| AGAGGGCATGTCAAGGAAGG+GGG | 0.481397 | 1_4:+43335677 | Msa0164220:CDS |
| GGAAGATCATAAAGAAGAAG+AGG | 0.484016 | 1_4:+43336490 | Msa0164220:CDS |
| GATCAACCGGTCACCGGTGG+TGG | 0.490122 | 1_4:+43335112 | Msa0164220:CDS |
| ATCAACTACTCCCACCGATC+GGG | 0.492964 | 1_4:+43335234 | Msa0164220:CDS |
| TTTGTGTTGTAATTTCTTGC+GGG | 0.493711 | 1_4:+43337220 | Msa0164220:three_prime_UTR |
| TTTAGTTTCATAAACTAGAT+GGG | 0.501968 | 1_4:+43334876 | Msa0164220:five_prime_UTR |
| GAGAGGGCATGTCAAGGAAG+GGG | 0.502321 | 1_4:+43335676 | Msa0164220:CDS |
| GAATCATCATAGCCGTTGGC+TGG | 0.502354 | 1_4:-43335260 | None:intergenic |
| TGCAGTCGTGTTAATGGAAG+AGG | 0.503807 | 1_4:+43336692 | Msa0164220:CDS |
| GGGAGAGGGCATGTCAAGGA+AGG | 0.508157 | 1_4:+43335674 | Msa0164220:CDS |
| TAGAGAAACAAAACAAAAGA+AGG | 0.509554 | 1_4:+43336523 | Msa0164220:CDS |
| AGTGTTATGACAGTAATGAA+TGG | 0.510545 | 1_4:+43336459 | Msa0164220:CDS |
| TATAGTATCTTGCAACTATG+AGG | 0.511241 | 1_4:+43335051 | Msa0164220:exon |
| TCATTTATATAGATTGGAGA+TGG | 0.513170 | 1_4:+43336321 | Msa0164220:intron |
| CGATCGATGAGTAGTTTGTT+GGG | 0.513939 | 1_4:+43336968 | Msa0164220:CDS |
| TCATAAAGAAGAAGAGGTAG+TGG | 0.518196 | 1_4:+43336496 | Msa0164220:CDS |
| TTGGCTGGTTTCCCGATCGG+TGG | 0.518762 | 1_4:-43335245 | None:intergenic |
| ATTTGTGTTGTAATTTCTTG+CGG | 0.519726 | 1_4:+43337219 | Msa0164220:three_prime_UTR |
| CCGTTGGCTGGTTTCCCGAT+CGG | 0.520449 | 1_4:-43335248 | None:intergenic |
| GTTGCACCACCACCGGTGAC+CGG | 0.532197 | 1_4:-43335118 | None:intergenic |
| CAGTAATGAATGGGATGAAG+AGG | 0.542280 | 1_4:+43336469 | Msa0164220:CDS |
| TGGCTGGTTTCCCGATCGGT+GGG | 0.543310 | 1_4:-43335244 | None:intergenic |
| CGATGGTTATCGCGAAGAAG+AGG | 0.553139 | 1_4:+43336921 | Msa0164220:CDS |
| AGCATCATTTAGGGAAAGGA+AGG | 0.554136 | 1_4:+43336759 | Msa0164220:CDS |
| TGTGATTTGCAGGTAGAAGA+TGG | 0.559441 | 1_4:+43335653 | Msa0164220:intron |
| GGAGAGGGCATGTCAAGGAA+GGG | 0.559602 | 1_4:+43335675 | Msa0164220:CDS |
| GTACTAATCGCAAAATACTA+GGG | 0.561295 | 1_4:+43337036 | Msa0164220:three_prime_UTR |
| GTGTTATGACAGTAATGAAT+GGG | 0.561410 | 1_4:+43336460 | Msa0164220:CDS |
| TGTAAGAAATAGGTCTATTG+TGG | 0.562415 | 1_4:+43336799 | Msa0164220:CDS |
| TCGTTGAGTTGCACCACCAC+CGG | 0.564805 | 1_4:-43335125 | None:intergenic |
| TGTGAGCATCATTTAGGGAA+AGG | 0.571914 | 1_4:+43336755 | Msa0164220:CDS |
| GATCAACTACTCCCACCGAT+CGG | 0.572727 | 1_4:+43335233 | Msa0164220:CDS |
| GAGTGCACAAACTTCAACTG+AGG | 0.575039 | 1_4:+43336168 | Msa0164220:CDS |
| GTGATTTGCAGGTAGAAGAT+GGG | 0.581315 | 1_4:+43335654 | Msa0164220:intron |
| AAACATGATCAACCGGTCAC+CGG | 0.587713 | 1_4:+43335106 | Msa0164220:CDS |
| TAAGGAATCATCATAGCCGT+TGG | 0.591615 | 1_4:-43335264 | None:intergenic |
| ACATTCTTGCACTCATGACA+TGG | 0.593391 | 1_4:+43335169 | Msa0164220:CDS |
| AGTAGTTGATCAGACGGCTG+AGG | 0.594515 | 1_4:-43335221 | None:intergenic |
| TTGCAGGTAGAAGATGGGAG+AGG | 0.602099 | 1_4:+43335659 | Msa0164220:intron |
| GAAGAGGATGAAGATTGGAA+TGG | 0.603128 | 1_4:+43336937 | Msa0164220:CDS |
| GTGTTAATGGAAGAGGATGG+AGG | 0.605411 | 1_4:+43336699 | Msa0164220:CDS |
| GTGCACTTATGGAAGGTTCG+CGG | 0.606666 | 1_4:+43336669 | Msa0164220:CDS |
| AGAGAATAACCGACTAGTGT+TGG | 0.608366 | 1_4:-43336731 | None:intergenic |
| TGCAGGTAGAAGATGGGAGA+GGG | 0.613399 | 1_4:+43335660 | Msa0164220:intron |
| AGATGGGAGAGGGCATGTCA+AGG | 0.620023 | 1_4:+43335670 | Msa0164220:CDS |
| AGAGGTGGTGCACTTATGGA+AGG | 0.620926 | 1_4:+43336662 | Msa0164220:CDS |
| GGTGGGAGTAGTTGATCAGA+CGG | 0.626321 | 1_4:-43335227 | None:intergenic |
| GACAAAAGGGTAATGATACC+AGG | 0.635672 | 1_4:+43335699 | Msa0164220:CDS |
| ACAAACAATCAATGATCTCG+TGG | 0.641658 | 1_4:+43336991 | Msa0164220:CDS |
| CAATGATGAGAAGAAGCCGA+TGG | 0.650219 | 1_4:+43336904 | Msa0164220:CDS |
| CATGATCAACCGGTCACCGG+TGG | 0.651100 | 1_4:+43335109 | Msa0164220:CDS |
| TGTTGTCAACCAACACTAGT+CGG | 0.655661 | 1_4:+43336722 | Msa0164220:CDS |
| AGGCCTTCTAGTCATAAACA+AGG | 0.659693 | 1_4:+43336205 | Msa0164220:CDS |
| TTTCCTCTAAAGAAACGGAG+AGG | 0.668761 | 1_4:+43336362 | Msa0164220:CDS |
| GTCGTGTTAATGGAAGAGGA+TGG | 0.680449 | 1_4:+43336696 | Msa0164220:CDS |
| ATAGATTGGAGATGGAACGA+CGG | 0.693875 | 1_4:+43336329 | Msa0164220:intron |
| CCGATCGGGAAACCAGCCAA+CGG | 0.698032 | 1_4:+43335248 | Msa0164220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTAATTTTTTTTTT+AGG | + | chr1_4:43335449-43335468 | Msa0164220:intron | 0.0% |
| !! | TATTAATGTGTTATATTTAT+TGG | + | chr1_4:43336233-43336252 | Msa0164220:intron | 10.0% |
| !! | TAAAATCAAAATAAAAAAGA+AGG | + | chr1_4:43336637-43336656 | Msa0164220:intron | 10.0% |
| !!! | ATTTTATTTCACATTCATAA+AGG | + | chr1_4:43335537-43335556 | Msa0164220:intron | 15.0% |
| !!! | TTTTATTTCACATTCATAAA+GGG | + | chr1_4:43335538-43335557 | Msa0164220:intron | 15.0% |
| !! | AATATCTCATAGTAAAAAAA+AGG | + | chr1_4:43335763-43335782 | Msa0164220:intron | 15.0% |
| !!! | GATTTTATAAACATCATATA+AGG | - | chr1_4:43336624-43336643 | None:intergenic | 15.0% |
| !!! | TTTTAGTTTCATAAACTAGA+TGG | + | chr1_4:43334875-43334894 | Msa0164220:five_prime_UTR | 20.0% |
| !!! | TTTAGTTTCATAAACTAGAT+GGG | + | chr1_4:43334876-43334895 | Msa0164220:five_prime_UTR | 20.0% |
| !! | AAATGAAAAATCACATACAA+AGG | - | chr1_4:43334963-43334982 | None:intergenic | 20.0% |
| !! | TTTATTTCACATTCATAAAG+GGG | + | chr1_4:43335539-43335558 | Msa0164220:intron | 20.0% |
| !!! | AATATTTTTGAAAGACACAA+AGG | + | chr1_4:43335563-43335582 | Msa0164220:intron | 20.0% |
| !!! | ATATTTTTGAAAGACACAAA+GGG | + | chr1_4:43335564-43335583 | Msa0164220:intron | 20.0% |
| !!! | TTTTTACTATGAGATATTCA+TGG | - | chr1_4:43335761-43335780 | None:intergenic | 20.0% |
| !! | AAAAGATATGTGATGTAAAT+GGG | - | chr1_4:43336040-43336059 | None:intergenic | 20.0% |
| !! | AAAAAGATATGTGATGTAAA+TGG | - | chr1_4:43336041-43336060 | None:intergenic | 20.0% |
| !!! | CTATTGTCATTTATATAGAT+TGG | + | chr1_4:43336315-43336334 | Msa0164220:intron | 20.0% |
| !! | AAAATAAAAAAGAAGGTAAG+AGG | + | chr1_4:43336644-43336663 | Msa0164220:intron | 20.0% |
| !! | CTAAATTTGGGTTTAGATTT+CGG | - | chr1_4:43334938-43334957 | None:intergenic | 25.0% |
| ! | CATACAAAGGATCTAAATTT+GGG | - | chr1_4:43334950-43334969 | None:intergenic | 25.0% |
| ! | ACATACAAAGGATCTAAATT+TGG | - | chr1_4:43334951-43334970 | None:intergenic | 25.0% |
| ! | CTCATAAATAACAATAGACT+TGG | - | chr1_4:43334996-43335015 | None:intergenic | 25.0% |
| !!! | TATTTTTGAAAGACACAAAG+GGG | + | chr1_4:43335565-43335584 | Msa0164220:intron | 25.0% |
| !! | ACCAACCATATTAATTTTAG+TGG | + | chr1_4:43335599-43335618 | Msa0164220:intron | 25.0% |
| ! | TCCACTAAAATTAATATGGT+TGG | - | chr1_4:43335603-43335622 | None:intergenic | 25.0% |
| ! | AGGATCCACTAAAATTAATA+TGG | - | chr1_4:43335607-43335626 | None:intergenic | 25.0% |
| ! | CACAAAAAAGAAACATACAT+AGG | - | chr1_4:43335627-43335646 | None:intergenic | 25.0% |
| ! | TAATTTCATGTGTCTTTCTT+TGG | - | chr1_4:43335730-43335749 | None:intergenic | 25.0% |
| ! | GTAAAAAAAAGGTGAAAACA+TGG | + | chr1_4:43335774-43335793 | Msa0164220:intron | 25.0% |
| !!! | TTAACTATGTTTTTTCATGC+CGG | - | chr1_4:43335820-43335839 | None:intergenic | 25.0% |
| ! | AAAGATATGTGATGTAAATG+GGG | - | chr1_4:43336039-43336058 | None:intergenic | 25.0% |
| ! | TTGTGTGATATTTATGTTTG+TGG | + | chr1_4:43336120-43336139 | Msa0164220:intron | 25.0% |
| ! | TCATTTATATAGATTGGAGA+TGG | + | chr1_4:43336321-43336340 | Msa0164220:intron | 25.0% |
| ! | TAGAGAAACAAAACAAAAGA+AGG | + | chr1_4:43336523-43336542 | Msa0164220:CDS | 25.0% |
| ! | ATATTTCATGTACTTCAGAT+TGG | + | chr1_4:43337074-43337093 | Msa0164220:three_prime_UTR | 25.0% |
| ! | TATTTCATGTACTTCAGATT+GGG | + | chr1_4:43337075-43337094 | Msa0164220:three_prime_UTR | 25.0% |
| ! | ATTTGTGTTGTAATTTCTTG+CGG | + | chr1_4:43337219-43337238 | Msa0164220:three_prime_UTR | 25.0% |
| TATAGTATCTTGCAACTATG+AGG | + | chr1_4:43335051-43335070 | Msa0164220:exon | 30.0% | |
| TCTAACACTTTGTAAAAGGT+TGG | - | chr1_4:43335506-43335525 | None:intergenic | 30.0% | |
| CCAATCTAACACTTTGTAAA+AGG | - | chr1_4:43335510-43335529 | None:intergenic | 30.0% | |
| !! | CCTTTTACAAAGTGTTAGAT+TGG | + | chr1_4:43335507-43335526 | Msa0164220:intron | 30.0% |
| TTACTATGAGATATTCATGG+AGG | - | chr1_4:43335758-43335777 | None:intergenic | 30.0% | |
| !!! | AGTTTTGAGGAAAAAACGAT+CGG | - | chr1_4:43335951-43335970 | None:intergenic | 30.0% |
| AAGATATGTGATGTAAATGG+GGG | - | chr1_4:43336038-43336057 | None:intergenic | 30.0% | |
| ACTTCAAGGTGAAAAAGAAA+AGG | - | chr1_4:43336089-43336108 | None:intergenic | 30.0% | |
| TTATGTTTGTGGATGTGAAT+AGG | + | chr1_4:43336131-43336150 | Msa0164220:intron | 30.0% | |
| ! | TTACCTTGTTTATGACTAGA+AGG | - | chr1_4:43336211-43336230 | None:intergenic | 30.0% |
| !! | AAGCTTTTCCTCTAAAGAAA+CGG | + | chr1_4:43336357-43336376 | Msa0164220:CDS | 30.0% |
| AGTGTTATGACAGTAATGAA+TGG | + | chr1_4:43336459-43336478 | Msa0164220:CDS | 30.0% | |
| GTGTTATGACAGTAATGAAT+GGG | + | chr1_4:43336460-43336479 | Msa0164220:CDS | 30.0% | |
| ATAAAAAAGAAGGTAAGAGG+TGG | + | chr1_4:43336647-43336666 | Msa0164220:intron | 30.0% | |
| TGTAAGAAATAGGTCTATTG+TGG | + | chr1_4:43336799-43336818 | Msa0164220:CDS | 30.0% | |
| AGTACTAATCGCAAAATACT+AGG | + | chr1_4:43337035-43337054 | Msa0164220:three_prime_UTR | 30.0% | |
| GTACTAATCGCAAAATACTA+GGG | + | chr1_4:43337036-43337055 | Msa0164220:three_prime_UTR | 30.0% | |
| TTTGTGTTGTAATTTCTTGC+GGG | + | chr1_4:43337220-43337239 | Msa0164220:three_prime_UTR | 30.0% | |
| !! | AAGAATGCGTTGTTTGATTT+TGG | + | chr1_4:43337274-43337293 | Msa0164220:three_prime_UTR | 30.0% |
| CACTAAGATATGTTCTTGGT+TGG | - | chr1_4:43334776-43334795 | None:intergenic | 35.0% | |
| CTCTCACTAAGATATGTTCT+TGG | - | chr1_4:43334780-43334799 | None:intergenic | 35.0% | |
| ! | TGAGAGAAAGAAAGTGCATT+AGG | + | chr1_4:43334794-43334813 | Msa0164220:five_prime_UTR | 35.0% |
| ! | AGAGAGTAGAGTAAGCTTTT+CGG | - | chr1_4:43335079-43335098 | None:intergenic | 35.0% |
| CAGATCTAAACATGATCAAC+CGG | + | chr1_4:43335099-43335118 | Msa0164220:CDS | 35.0% | |
| ! | TCATGAGTGCAAGAATGTTT+TGG | - | chr1_4:43335167-43335186 | None:intergenic | 35.0% |
| AAATTTCTTGCTTCTTGTGC+TGG | - | chr1_4:43335292-43335311 | None:intergenic | 35.0% | |
| ! | GCACAAGAAGCAAGAAATTT+TGG | + | chr1_4:43335292-43335311 | Msa0164220:CDS | 35.0% |
| !!! | TGTCTTTCTTTGGTTTTACC+TGG | - | chr1_4:43335720-43335739 | None:intergenic | 35.0% |
| GACCCATAACTTGATTTAAC+CGG | + | chr1_4:43335798-43335817 | Msa0164220:intron | 35.0% | |
| ! | TGCCGGTTAAATCAAGTTAT+GGG | - | chr1_4:43335803-43335822 | None:intergenic | 35.0% |
| ! | ATGCCGGTTAAATCAAGTTA+TGG | - | chr1_4:43335804-43335823 | None:intergenic | 35.0% |
| ! | AACGATCGGTTTAGATAAGA+GGG | - | chr1_4:43335937-43335956 | None:intergenic | 35.0% |
| ! | AAACGATCGGTTTAGATAAG+AGG | - | chr1_4:43335938-43335957 | None:intergenic | 35.0% |
| !! | CTTTTTCACCTTGAAGTGTA+TGG | + | chr1_4:43336092-43336111 | Msa0164220:intron | 35.0% |
| CAATTACACCATACACTTCA+AGG | - | chr1_4:43336103-43336122 | None:intergenic | 35.0% | |
| TTTGTGGATGTGAATAGGAA+TGG | + | chr1_4:43336136-43336155 | Msa0164220:intron | 35.0% | |
| GGAAGATCATAAAGAAGAAG+AGG | + | chr1_4:43336490-43336509 | Msa0164220:CDS | 35.0% | |
| TCATAAAGAAGAAGAGGTAG+TGG | + | chr1_4:43336496-43336515 | Msa0164220:CDS | 35.0% | |
| TCTCTATGTGAGCATCATTT+AGG | + | chr1_4:43336749-43336768 | Msa0164220:CDS | 35.0% | |
| CTCTATGTGAGCATCATTTA+GGG | + | chr1_4:43336750-43336769 | Msa0164220:CDS | 35.0% | |
| GCATGACAAGTGTAAGAAAT+AGG | + | chr1_4:43336789-43336808 | Msa0164220:CDS | 35.0% | |
| !!! | TTGGTTAGCTTTTCAAGAGA+TGG | - | chr1_4:43336869-43336888 | None:intergenic | 35.0% |
| GAAAAGCTAACCAAGTTTGA+TGG | + | chr1_4:43336875-43336894 | Msa0164220:CDS | 35.0% | |
| ATTGTCTTCACCATCAAACT+TGG | - | chr1_4:43336888-43336907 | None:intergenic | 35.0% | |
| ACAAACAATCAATGATCTCG+TGG | + | chr1_4:43336991-43337010 | Msa0164220:CDS | 35.0% | |
| !! | GTTCTTGGTTGGTTTCTATC+TGG | - | chr1_4:43334765-43334784 | None:intergenic | 40.0% |
| ACATTCTTGCACTCATGACA+TGG | + | chr1_4:43335169-43335188 | Msa0164220:CDS | 40.0% | |
| TAAGGAATCATCATAGCCGT+TGG | - | chr1_4:43335267-43335286 | None:intergenic | 40.0% | |
| ! | TGTGATTTGCAGGTAGAAGA+TGG | + | chr1_4:43335653-43335672 | Msa0164220:intron | 40.0% |
| ! | GTGATTTGCAGGTAGAAGAT+GGG | + | chr1_4:43335654-43335673 | Msa0164220:intron | 40.0% |
| GACAAAAGGGTAATGATACC+AGG | + | chr1_4:43335699-43335718 | Msa0164220:CDS | 40.0% | |
| !!! | TTGGTAGGTAGCTAGTTTTG+AGG | - | chr1_4:43335964-43335983 | None:intergenic | 40.0% |
| TACCTTCTTGTGCAGCTAAA+GGG | - | chr1_4:43335991-43336010 | None:intergenic | 40.0% | |
| TTATGACTAGAAGGCCTTGA+AGG | - | chr1_4:43336202-43336221 | None:intergenic | 40.0% | |
| AGGCCTTCTAGTCATAAACA+AGG | + | chr1_4:43336205-43336224 | Msa0164220:CDS | 40.0% | |
| ATAGATTGGAGATGGAACGA+CGG | + | chr1_4:43336329-43336348 | Msa0164220:intron | 40.0% | |
| ! | TTTCCTCTAAAGAAACGGAG+AGG | + | chr1_4:43336362-43336381 | Msa0164220:CDS | 40.0% |
| CAGTAATGAATGGGATGAAG+AGG | + | chr1_4:43336469-43336488 | Msa0164220:CDS | 40.0% | |
| TGTTGTCAACCAACACTAGT+CGG | + | chr1_4:43336722-43336741 | Msa0164220:CDS | 40.0% | |
| AGAGAATAACCGACTAGTGT+TGG | - | chr1_4:43336734-43336753 | None:intergenic | 40.0% | |
| TGTGAGCATCATTTAGGGAA+AGG | + | chr1_4:43336755-43336774 | Msa0164220:CDS | 40.0% | |
| AGCATCATTTAGGGAAAGGA+AGG | + | chr1_4:43336759-43336778 | Msa0164220:CDS | 40.0% | |
| ! | GGAGGTTCAGTTTGAGATAT+TGG | - | chr1_4:43336848-43336867 | None:intergenic | 40.0% |
| !!! | GTTAGCTTTTCAAGAGATGG+AGG | - | chr1_4:43336866-43336885 | None:intergenic | 40.0% |
| GAAGAGGATGAAGATTGGAA+TGG | + | chr1_4:43336937-43336956 | Msa0164220:CDS | 40.0% | |
| !! | CGATCGATGAGTAGTTTGTT+GGG | + | chr1_4:43336968-43336987 | Msa0164220:CDS | 40.0% |
| TGAACTTGCACTCACGTATA+AGG | - | chr1_4:43337126-43337145 | None:intergenic | 40.0% | |
| AAACATGATCAACCGGTCAC+CGG | + | chr1_4:43335106-43335125 | Msa0164220:CDS | 45.0% | |
| !! | TTGCTTCTTGTGCTGGCTTA+AGG | - | chr1_4:43335285-43335304 | None:intergenic | 45.0% |
| CAGCTAAAGGGCAAATTGGT+AGG | - | chr1_4:43335979-43335998 | None:intergenic | 45.0% | |
| TGTGCAGCTAAAGGGCAAAT+TGG | - | chr1_4:43335983-43336002 | None:intergenic | 45.0% | |
| CTACCTTCTTGTGCAGCTAA+AGG | - | chr1_4:43335992-43336011 | None:intergenic | 45.0% | |
| GAGTGCACAAACTTCAACTG+AGG | + | chr1_4:43336168-43336187 | Msa0164220:CDS | 45.0% | |
| ! | CTGAGGTTTTCTCTCCTTCA+AGG | + | chr1_4:43336185-43336204 | Msa0164220:CDS | 45.0% |
| CTTCCTCTCCGTTTCTTTAG+AGG | - | chr1_4:43336368-43336387 | None:intergenic | 45.0% | |
| TGCAGTCGTGTTAATGGAAG+AGG | + | chr1_4:43336692-43336711 | Msa0164220:CDS | 45.0% | |
| GTCGTGTTAATGGAAGAGGA+TGG | + | chr1_4:43336696-43336715 | Msa0164220:CDS | 45.0% | |
| GTGTTAATGGAAGAGGATGG+AGG | + | chr1_4:43336699-43336718 | Msa0164220:CDS | 45.0% | |
| CAATGATGAGAAGAAGCCGA+TGG | + | chr1_4:43336904-43336923 | Msa0164220:CDS | 45.0% | |
| CTCTTCTTCGCGATAACCAT+CGG | - | chr1_4:43336923-43336942 | None:intergenic | 45.0% | |
| GCGAAGAAGAGGATGAAGAT+TGG | + | chr1_4:43336932-43336951 | Msa0164220:CDS | 45.0% | |
| ! | GCGATCGATGAGTAGTTTGT+TGG | + | chr1_4:43336967-43336986 | Msa0164220:CDS | 45.0% |
| !!! | AATTTTTTTATGAAATTATA+AGG | + | chr1_4:43335842-43335861 | Msa0164220:intron | 5.0% |
| !! | TATTATTAAATATTAGATAT+TGG | + | chr1_4:43337248-43337267 | Msa0164220:three_prime_UTR | 5.0% |
| AGTAGTTGATCAGACGGCTG+AGG | - | chr1_4:43335224-43335243 | None:intergenic | 50.0% | |
| GGTGGGAGTAGTTGATCAGA+CGG | - | chr1_4:43335230-43335249 | None:intergenic | 50.0% | |
| GATCAACTACTCCCACCGAT+CGG | + | chr1_4:43335233-43335252 | Msa0164220:CDS | 50.0% | |
| ATCAACTACTCCCACCGATC+GGG | + | chr1_4:43335234-43335253 | Msa0164220:CDS | 50.0% | |
| GAATCATCATAGCCGTTGGC+TGG | - | chr1_4:43335263-43335282 | None:intergenic | 50.0% | |
| TTGCAGGTAGAAGATGGGAG+AGG | + | chr1_4:43335659-43335678 | Msa0164220:intron | 50.0% | |
| TGCAGGTAGAAGATGGGAGA+GGG | + | chr1_4:43335660-43335679 | Msa0164220:intron | 50.0% | |
| TGTCAAGGAAGGGGGACAAA+AGG | + | chr1_4:43335685-43335704 | Msa0164220:CDS | 50.0% | |
| GTCAAGGAAGGGGGACAAAA+GGG | + | chr1_4:43335686-43335705 | Msa0164220:CDS | 50.0% | |
| TGCCCTTTAGCTGCACAAGA+AGG | + | chr1_4:43335986-43336005 | Msa0164220:intron | 50.0% | |
| GCACAAGAAGGTAGATCGAG+TGG | + | chr1_4:43335998-43336017 | Msa0164220:intron | 50.0% | |
| GATCGAGTGGAACCAAATGC+TGG | + | chr1_4:43336011-43336030 | Msa0164220:intron | 50.0% | |
| GTAAATGGGGGACCAGCATT+TGG | - | chr1_4:43336026-43336045 | None:intergenic | 50.0% | |
| GGTAAGAGGTGGTGCACTTA+TGG | + | chr1_4:43336658-43336677 | Msa0164220:CDS | 50.0% | |
| AGAGGTGGTGCACTTATGGA+AGG | + | chr1_4:43336662-43336681 | Msa0164220:CDS | 50.0% | |
| GTGCACTTATGGAAGGTTCG+CGG | + | chr1_4:43336669-43336688 | Msa0164220:CDS | 50.0% | |
| CGATGGTTATCGCGAAGAAG+AGG | + | chr1_4:43336921-43336940 | Msa0164220:CDS | 50.0% | |
| ! | TCGTTGAGTTGCACCACCAC+CGG | - | chr1_4:43335128-43335147 | None:intergenic | 55.0% |
| ! | TGTGCGTGCGTGTGATTTGC+AGG | + | chr1_4:43335643-43335662 | Msa0164220:intron | 55.0% |
| ! | AGATGGGAGAGGGCATGTCA+AGG | + | chr1_4:43335670-43335689 | Msa0164220:CDS | 55.0% |
| ! | GGAGAGGGCATGTCAAGGAA+GGG | + | chr1_4:43335675-43335694 | Msa0164220:CDS | 55.0% |
| ! | GAGAGGGCATGTCAAGGAAG+GGG | + | chr1_4:43335676-43335695 | Msa0164220:CDS | 55.0% |
| ! | AGAGGGCATGTCAAGGAAGG+GGG | + | chr1_4:43335677-43335696 | Msa0164220:CDS | 55.0% |
| TCGCGGTGCAGTCGTGTTAA+TGG | + | chr1_4:43336686-43336705 | Msa0164220:CDS | 55.0% | |
| CATGATCAACCGGTCACCGG+TGG | + | chr1_4:43335109-43335128 | Msa0164220:CDS | 60.0% | |
| !! | TGGCTGGTTTCCCGATCGGT+GGG | - | chr1_4:43335247-43335266 | None:intergenic | 60.0% |
| !! | TTGGCTGGTTTCCCGATCGG+TGG | - | chr1_4:43335248-43335267 | None:intergenic | 60.0% |
| !! | CCGTTGGCTGGTTTCCCGAT+CGG | - | chr1_4:43335251-43335270 | None:intergenic | 60.0% |
| CCGATCGGGAAACCAGCCAA+CGG | + | chr1_4:43335248-43335267 | Msa0164220:CDS | 60.0% | |
| ! | GGGAGAGGGCATGTCAAGGA+AGG | + | chr1_4:43335674-43335693 | Msa0164220:CDS | 60.0% |
| GATCAACCGGTCACCGGTGG+TGG | + | chr1_4:43335112-43335131 | Msa0164220:CDS | 65.0% | |
| GTTGCACCACCACCGGTGAC+CGG | - | chr1_4:43335121-43335140 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 43334735 | 43337326 | 43334735 | ID=Msa0164220;Name=Msa0164220 |
| chr1_4 | mRNA | 43334735 | 43337326 | 43334735 | ID=Msa0164220-mRNA-1;Parent=Msa0164220;Name=Msa0164220-mRNA-1;_AED=0.11;_eAED=0.11;_QI=333|1|1|1|1|1|5|293|321 |
| chr1_4 | exon | 43334735 | 43335313 | 43334735 | ID=Msa0164220-mRNA-1:exon:12448;Parent=Msa0164220-mRNA-1 |
| chr1_4 | exon | 43335665 | 43335720 | 43335665 | ID=Msa0164220-mRNA-1:exon:12449;Parent=Msa0164220-mRNA-1 |
| chr1_4 | exon | 43336153 | 43336226 | 43336153 | ID=Msa0164220-mRNA-1:exon:12450;Parent=Msa0164220-mRNA-1 |
| chr1_4 | exon | 43336333 | 43336544 | 43336333 | ID=Msa0164220-mRNA-1:exon:12451;Parent=Msa0164220-mRNA-1 |
| chr1_4 | exon | 43336656 | 43337326 | 43336656 | ID=Msa0164220-mRNA-1:exon:12452;Parent=Msa0164220-mRNA-1 |
| chr1_4 | five_prime_UTR | 43334735 | 43335067 | 43334735 | ID=Msa0164220-mRNA-1:five_prime_utr;Parent=Msa0164220-mRNA-1 |
| chr1_4 | CDS | 43335068 | 43335313 | 43335068 | ID=Msa0164220-mRNA-1:cds;Parent=Msa0164220-mRNA-1 |
| chr1_4 | CDS | 43335665 | 43335720 | 43335665 | ID=Msa0164220-mRNA-1:cds;Parent=Msa0164220-mRNA-1 |
| chr1_4 | CDS | 43336153 | 43336226 | 43336153 | ID=Msa0164220-mRNA-1:cds;Parent=Msa0164220-mRNA-1 |
| chr1_4 | CDS | 43336333 | 43336544 | 43336333 | ID=Msa0164220-mRNA-1:cds;Parent=Msa0164220-mRNA-1 |
| chr1_4 | CDS | 43336656 | 43337033 | 43336656 | ID=Msa0164220-mRNA-1:cds;Parent=Msa0164220-mRNA-1 |
| chr1_4 | three_prime_UTR | 43337034 | 43337326 | 43337034 | ID=Msa0164220-mRNA-1:three_prime_utr;Parent=Msa0164220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
