Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118000 | A0A396JPZ8 | 90.343 | 321 | 24 | 3 | 1 | 320 | 1 | 315 | 0.0 | 534 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007970 | Msa0118000 | 0.809226 | 2.100648e-50 | -8.615850e-47 |
| Msa0012940 | Msa0118000 | 0.809945 | 1.472082e-50 | -8.615850e-47 |
| Msa0022750 | Msa0118000 | -0.828615 | 8.145263e-55 | -8.615850e-47 |
| Msa0027320 | Msa0118000 | 0.803724 | 3.041000e-49 | -8.615850e-47 |
| Msa0027390 | Msa0118000 | 0.806123 | 9.583139e-50 | -8.615850e-47 |
| Msa0030280 | Msa0118000 | 0.813832 | 2.096654e-51 | -8.615850e-47 |
| Msa0036130 | Msa0118000 | 0.807860 | 4.111564e-50 | -8.615850e-47 |
| Msa0039250 | Msa0118000 | 0.834679 | 2.606555e-56 | -8.615850e-47 |
| Msa0049780 | Msa0118000 | 0.804145 | 2.486197e-49 | -8.615850e-47 |
| Msa0055070 | Msa0118000 | 0.806029 | 1.002849e-49 | -8.615850e-47 |
| Msa0055150 | Msa0118000 | 0.803284 | 3.751862e-49 | -8.615850e-47 |
| Msa0069600 | Msa0118000 | 0.800989 | 1.112375e-48 | -8.615850e-47 |
| Msa0090030 | Msa0118000 | 0.820804 | 5.651164e-53 | -8.615850e-47 |
| Msa0092170 | Msa0118000 | 0.804099 | 2.541231e-49 | -8.615850e-47 |
| Msa0097950 | Msa0118000 | 0.801859 | 7.379791e-49 | -8.615850e-47 |
| Msa0098470 | Msa0118000 | 0.801554 | 8.525740e-49 | -8.615850e-47 |
| Msa0100800 | Msa0118000 | 0.818453 | 1.944948e-52 | -8.615850e-47 |
| Msa0101020 | Msa0118000 | 0.804118 | 2.518308e-49 | -8.615850e-47 |
| Msa0101880 | Msa0118000 | 0.825200 | 5.337419e-54 | -8.615850e-47 |
| Msa0103250 | Msa0118000 | 0.801015 | 1.099029e-48 | -8.615850e-47 |
| Msa0118000 | Msa0133720 | 0.840795 | 7.012122e-58 | -8.615850e-47 |
| Msa0118000 | Msa0133820 | 0.821628 | 3.648756e-53 | -8.615850e-47 |
| Msa0118000 | Msa0145110 | 0.806066 | 9.853428e-50 | -8.615850e-47 |
| Msa0118000 | Msa0160670 | 0.802612 | 5.164789e-49 | -8.615850e-47 |
| Msa0118000 | Msa0161530 | 0.810310 | 1.228482e-50 | -8.615850e-47 |
| Msa0118000 | Msa0165300 | 0.805536 | 1.272910e-49 | -8.615850e-47 |
| Msa0118000 | Msa0181230 | 0.834132 | 3.576649e-56 | -8.615850e-47 |
| Msa0118000 | Msa0187030 | 0.812644 | 3.821509e-51 | -8.615850e-47 |
| Msa0118000 | Msa0197520 | 0.811755 | 5.973337e-51 | -8.615850e-47 |
| Msa0118000 | Msa0197780 | 0.807253 | 5.533308e-50 | -8.615850e-47 |
| Msa0118000 | Msa0207350 | 0.813792 | 2.139414e-51 | -8.615850e-47 |
| Msa0118000 | Msa0208810 | 0.822026 | 2.951723e-53 | -8.615850e-47 |
| Msa0118000 | Msa0230370 | 0.802305 | 5.974799e-49 | -8.615850e-47 |
| Msa0118000 | Msa0238230 | 0.808696 | 2.728710e-50 | -8.615850e-47 |
| Msa0118000 | Msa0346990 | 0.829923 | 3.922479e-55 | -8.615850e-47 |
| Msa0118000 | Msa0363810 | 0.803165 | 3.971293e-49 | -8.615850e-47 |
| Msa0118000 | Msa0392200 | 0.833598 | 4.865715e-56 | -8.615850e-47 |
| Msa0118000 | Msa0397820 | 0.803625 | 3.188607e-49 | -8.615850e-47 |
| Msa0118000 | Msa0420590 | -0.801188 | 1.013204e-48 | -8.615850e-47 |
| Msa0118000 | Msa0431770 | 0.835939 | 1.252727e-56 | -8.615850e-47 |
| Msa0118000 | Msa0437510 | 0.837276 | 5.720205e-57 | -8.615850e-47 |
| Msa0118000 | Msa0455740 | 0.813418 | 2.585786e-51 | -8.615850e-47 |
| Msa0118000 | Msa0461590 | 0.813119 | 3.007352e-51 | -8.615850e-47 |
| Msa0118000 | Msa0487780 | 0.820797 | 5.673333e-53 | -8.615850e-47 |
| Msa0118000 | Msa0510290 | 0.808134 | 3.595447e-50 | -8.615850e-47 |
| Msa0118000 | Msa0517090 | 0.812225 | 4.718851e-51 | -8.615850e-47 |
| Msa0118000 | Msa0519130 | 0.800536 | 1.376393e-48 | -8.615850e-47 |
| Msa0118000 | Msa0545060 | 0.808961 | 2.394099e-50 | -8.615850e-47 |
| Msa0118000 | Msa0548150 | 0.816125 | 6.497666e-52 | -8.615850e-47 |
| Msa0118000 | Msa0556010 | 0.816401 | 5.635852e-52 | -8.615850e-47 |
| Msa0118000 | Msa0557050 | 0.800520 | 1.387068e-48 | -8.615850e-47 |
| Msa0118000 | Msa0578090 | 0.848306 | 6.664850e-60 | -8.615850e-47 |
| Msa0118000 | Msa0581690 | 0.817484 | 3.219660e-52 | -8.615850e-47 |
| Msa0118000 | Msa0583500 | 0.807227 | 5.602585e-50 | -8.615850e-47 |
| Msa0118000 | Msa0584550 | 0.812573 | 3.961172e-51 | -8.615850e-47 |
| Msa0118000 | Msa0586850 | 0.835758 | 1.392387e-56 | -8.615850e-47 |
| Msa0118000 | Msa0610090 | 0.803034 | 4.226587e-49 | -8.615850e-47 |
| Msa0118000 | Msa0610500 | 0.809452 | 1.878890e-50 | -8.615850e-47 |
| Msa0118000 | Msa0626680 | 0.826774 | 2.255355e-54 | -8.615850e-47 |
| Msa0118000 | Msa0633760 | 0.807457 | 5.007152e-50 | -8.615850e-47 |
| Msa0118000 | Msa0640500 | 0.802261 | 6.102337e-49 | -8.615850e-47 |
| Msa0118000 | Msa0648520 | 0.821318 | 4.304204e-53 | -8.615850e-47 |
| Msa0118000 | Msa0651150 | 0.822107 | 2.827814e-53 | -8.615850e-47 |
| Msa0118000 | Msa0652760 | 0.800120 | 1.672865e-48 | -8.615850e-47 |
| Msa0118000 | Msa0664760 | 0.845286 | 4.464328e-59 | -8.615850e-47 |
| Msa0118000 | Msa0687230 | 0.800884 | 1.168823e-48 | -8.615850e-47 |
| Msa0118000 | Msa0689760 | 0.806368 | 8.509869e-50 | -8.615850e-47 |
| Msa0118000 | Msa0691050 | 0.823616 | 1.258400e-53 | -8.615850e-47 |
| Msa0118000 | Msa0707390 | 0.817742 | 2.815634e-52 | -8.615850e-47 |
| Msa0118000 | Msa0716410 | 0.828994 | 6.597854e-55 | -8.615850e-47 |
| Msa0118000 | Msa0716860 | 0.809267 | 2.059275e-50 | -8.615850e-47 |
| Msa0118000 | Msa0744090 | 0.812141 | 4.922064e-51 | -8.615850e-47 |
| Msa0118000 | Msa0744100 | 0.806201 | 9.228408e-50 | -8.615850e-47 |
| Msa0118000 | Msa0750250 | 0.805653 | 1.203266e-49 | -8.615850e-47 |
| Msa0118000 | Msa0757800 | 0.813348 | 2.679311e-51 | -8.615850e-47 |
| Msa0118000 | Msa0758230 | 0.832270 | 1.040298e-55 | -8.615850e-47 |
| Msa0118000 | Msa0788110 | 0.839120 | 1.916177e-57 | -8.615850e-47 |
| Msa0118000 | Msa0788120 | 0.812310 | 4.521350e-51 | -8.615850e-47 |
| Msa0118000 | Msa0799000 | 0.811934 | 5.459923e-51 | -8.615850e-47 |
| Msa0118000 | Msa0818630 | 0.827035 | 1.954136e-54 | -8.615850e-47 |
| Msa0118000 | Msa0819540 | 0.819446 | 1.156627e-52 | -8.615850e-47 |
| Msa0118000 | Msa0825270 | 0.802948 | 4.401883e-49 | -8.615850e-47 |
| Msa0118000 | Msa0825280 | 0.820408 | 6.967825e-53 | -8.615850e-47 |
| Msa0118000 | Msa0830390 | 0.817024 | 4.085177e-52 | -8.615850e-47 |
| Msa0118000 | Msa0850710 | 0.801127 | 1.042350e-48 | -8.615850e-47 |
| Msa0118000 | Msa0851470 | 0.816431 | 5.549463e-52 | -8.615850e-47 |
| Msa0118000 | Msa0873860 | 0.804976 | 1.667507e-49 | -8.615850e-47 |
| Msa0118000 | Msa0879080 | 0.813727 | 2.210519e-51 | -8.615850e-47 |
| Msa0118000 | Msa0888940 | 0.841860 | 3.676888e-58 | -8.615850e-47 |
| Msa0118000 | Msa0944660 | 0.830592 | 2.691938e-55 | -8.615850e-47 |
| Msa0118000 | Msa0947530 | -0.838249 | 3.217653e-57 | -8.615850e-47 |
| Msa0118000 | Msa0980940 | 0.802545 | 5.332965e-49 | -8.615850e-47 |
| Msa0118000 | Msa1000930 | 0.804097 | 2.543379e-49 | -8.615850e-47 |
| Msa0118000 | Msa1004420 | 0.829749 | 4.325858e-55 | -8.615850e-47 |
| Msa0118000 | Msa1010070 | 0.807163 | 5.781478e-50 | -8.615850e-47 |
| Msa0118000 | Msa1025260 | 0.813088 | 3.054937e-51 | -8.615850e-47 |
| Msa0118000 | Msa1033660 | 0.819049 | 1.424304e-52 | -8.615850e-47 |
| Msa0118000 | Msa1033970 | 0.812213 | 4.747644e-51 | -8.615850e-47 |
| Msa0118000 | Msa1040840 | 0.821332 | 4.272243e-53 | -8.615850e-47 |
| Msa0118000 | Msa1050700 | 0.809338 | 1.987919e-50 | -8.615850e-47 |
| Msa0118000 | Msa1051600 | 0.814837 | 1.257186e-51 | -8.615850e-47 |
| Msa0118000 | Msa1082690 | 0.814063 | 1.864163e-51 | -8.615850e-47 |
| Msa0118000 | Msa1109350 | 0.806023 | 1.005952e-49 | -8.615850e-47 |
| Msa0118000 | Msa1113590 | 0.817045 | 4.041623e-52 | -8.615850e-47 |
| Msa0118000 | Msa1114040 | 0.801119 | 1.046660e-48 | -8.615850e-47 |
| Msa0118000 | Msa1128330 | 0.801674 | 8.053911e-49 | -8.615850e-47 |
| Msa0118000 | Msa1145240 | 0.803524 | 3.345256e-49 | -8.615850e-47 |
| Msa0118000 | Msa1169720 | 0.847392 | 1.190409e-59 | -8.615850e-47 |
| Msa0118000 | Msa1173900 | 0.800103 | 1.686151e-48 | -8.615850e-47 |
| Msa0118000 | Msa1178370 | 0.834232 | 3.375755e-56 | -8.615850e-47 |
| Msa0118000 | Msa1198880 | 0.845141 | 4.887914e-59 | -8.615850e-47 |
| Msa0118000 | Msa1207730 | 0.810644 | 1.040315e-50 | -8.615850e-47 |
| Msa0118000 | Msa1214240 | 0.800919 | 1.149937e-48 | -8.615850e-47 |
| Msa0118000 | Msa1223330 | 0.800204 | 1.608144e-48 | -8.615850e-47 |
| Msa0118000 | Msa1262960 | 0.801528 | 8.629133e-49 | -8.615850e-47 |
| Msa0118000 | Msa1286550 | 0.809107 | 2.227834e-50 | -8.615850e-47 |
| Msa0118000 | Msa1294960 | 0.820316 | 7.315504e-53 | -8.615850e-47 |
| Msa0118000 | Msa1302060 | 0.814807 | 1.276350e-51 | -8.615850e-47 |
| Msa0118000 | Msa1307550 | 0.802108 | 6.561178e-49 | -8.615850e-47 |
| Msa0118000 | Msa1311960 | 0.800100 | 1.688600e-48 | -8.615850e-47 |
| Msa0118000 | Msa1317810 | -0.804702 | 1.903246e-49 | -8.615850e-47 |
| Msa0118000 | Msa1340040 | -0.819313 | 1.240019e-52 | -8.615850e-47 |
| Msa0118000 | Msa1340830 | 0.807601 | 4.666517e-50 | -8.615850e-47 |
| Msa0118000 | Msa1363700 | 0.818012 | 2.447935e-52 | -8.615850e-47 |
| Msa0118000 | Msa1365760 | 0.828116 | 1.074936e-54 | -8.615850e-47 |
| Msa0118000 | Msa1407970 | 0.806580 | 7.678281e-50 | -8.615850e-47 |
| Msa0118000 | Msa1420250 | 0.804079 | 2.566461e-49 | -8.615850e-47 |
| Msa0118000 | Msa1422910 | 0.827838 | 1.254007e-54 | -8.615850e-47 |
| Msa0118000 | Msa1447110 | 0.803482 | 3.414336e-49 | -8.615850e-47 |
| Msa0118000 | Msa1449910 | 0.842079 | 3.218610e-58 | -8.615850e-47 |
| Msa0118000 | Msa1466090 | 0.830399 | 3.002707e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118000 | MtrunA17_Chr1g0175521 | 90.343 | 321 | 24 | 3 | 1 | 320 | 1 | 315 | 0.0 | 534 |
| Msa0118000 | MtrunA17_Chr7g0258791 | 48.204 | 334 | 130 | 12 | 12 | 320 | 23 | 338 | 1.62e-72 | 227 |
| Msa0118000 | MtrunA17_Chr7g0258801 | 48.673 | 339 | 125 | 14 | 12 | 320 | 23 | 342 | 2.04e-71 | 224 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118000 | AT2G42040.1 | 52.336 | 107 | 24 | 1 | 203 | 309 | 163 | 242 | 2.78e-22 | 94.7 |
Find 91 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATAGAAGGATCTAAATT+TGG | 0.138899 | 1_3:-40259405 | None:intergenic |
| GCACAAGAAGCAAGAAATTT+TGG | 0.142499 | 1_3:+40259746 | Msa0118000:CDS |
| AAGAATGCGTTGTTTGATTT+TGG | 0.169330 | 1_3:+40261646 | Msa0118000:three_prime_UTR |
| TCTCTTTGTGAGCATCATTT+AGG | 0.194755 | 1_3:+40261124 | Msa0118000:CDS |
| CTTCCTCTCCGTTTCTTTAG+AGG | 0.209046 | 1_3:-40260737 | None:intergenic |
| TATTATTAAATTTAAGATAT+TGG | 0.229930 | 1_3:+40261620 | Msa0118000:three_prime_UTR |
| GGAGGTTCAGTTTGAGATAT+TGG | 0.234305 | 1_3:-40261220 | None:intergenic |
| GTTCTTGGTTGGTTTCTATC+TGG | 0.254125 | 1_3:-40259223 | None:intergenic |
| CTAAATTTGGGTTTAGATTT+CGG | 0.256077 | 1_3:-40259392 | None:intergenic |
| CTCTTTGTGAGCATCATTTA+GGG | 0.266093 | 1_3:+40261125 | Msa0118000:CDS |
| CTTGCTTCTTGTGCTGGCTT+AGG | 0.269170 | 1_3:-40259737 | None:intergenic |
| CTCTCACTAAGATATGTTCT+TGG | 0.279403 | 1_3:-40259238 | None:intergenic |
| TCGCGGTGCAGTCGAGTTAA+TGG | 0.280856 | 1_3:+40261061 | Msa0118000:CDS |
| GGTAAGAGGTGGTGCGCTTA+TGG | 0.322432 | 1_3:+40261033 | Msa0118000:CDS |
| GCATGACAAGTGTAAGAAAT+AGG | 0.329001 | 1_3:+40261164 | Msa0118000:CDS |
| TTGCTTCTTGTGCTGGCTTA+GGG | 0.336473 | 1_3:-40259736 | None:intergenic |
| CTATAGAAGGATCTAAATTT+GGG | 0.347816 | 1_3:-40259404 | None:intergenic |
| TTACCTTGTTTATGACTAGA+AGG | 0.355956 | 1_3:-40260580 | None:intergenic |
| AAATTTCTTGCTTCTTGTGC+TGG | 0.356796 | 1_3:-40259743 | None:intergenic |
| TTTAGTTTCATAAACAAGAT+AGG | 0.368528 | 1_3:+40259336 | Msa0118000:five_prime_UTR |
| TCATGAGTGCAAGAAAGTTT+TGG | 0.385868 | 1_3:-40259618 | None:intergenic |
| TGAGAGAAAGAAAGTGCATT+AGG | 0.387249 | 1_3:+40259255 | Msa0118000:five_prime_UTR |
| AGTACTAATCGCAAAATACT+AGG | 0.391185 | 1_3:+40261407 | Msa0118000:three_prime_UTR |
| TGAACTTGCACTCACGTATA+AGG | 0.423080 | 1_3:-40261495 | None:intergenic |
| ATCCTCTTCGCAATCATCAA+TGG | 0.427214 | 1_3:-40261295 | None:intergenic |
| TATTTCATGTACTTCAGATT+GGG | 0.439552 | 1_3:+40261447 | Msa0118000:three_prime_UTR |
| CACTAAGATATGTTCTTGGT+TGG | 0.444824 | 1_3:-40259234 | None:intergenic |
| ATCGACTACTCCCACCGATC+GGG | 0.452207 | 1_3:+40259688 | Msa0118000:CDS |
| AGAGGAAGCTTTGCGATGAA+TGG | 0.458410 | 1_3:+40260752 | Msa0118000:CDS |
| CAGATCTCAACATGATCAAC+CGG | 0.459291 | 1_3:+40259553 | Msa0118000:CDS |
| TTATGACTAGAAGGCCTTGA+AGG | 0.462959 | 1_3:-40260571 | None:intergenic |
| GCGATCGATGAGTAGTTTGT+TGG | 0.464541 | 1_3:+40261339 | Msa0118000:CDS |
| ATTGCGAAGAGGATGAAGAT+TGG | 0.464668 | 1_3:+40261304 | Msa0118000:CDS |
| ATCTTGTGACATAGATTCAT+AGG | 0.466229 | 1_3:+40259482 | Msa0118000:five_prime_UTR |
| ATATTTCATGTACTTCAGAT+TGG | 0.466810 | 1_3:+40261446 | Msa0118000:three_prime_UTR |
| GGGAGAGGGCATGTCAAGAA+AGG | 0.468944 | 1_3:+40260033 | Msa0118000:CDS |
| GGAGAGGGCATGTCAAGAAA+GGG | 0.478865 | 1_3:+40260034 | Msa0118000:CDS |
| GGAAGATCATAAAGAAGAAG+AGG | 0.484016 | 1_3:+40260862 | Msa0118000:CDS |
| TCATAAAGAAGAAGAGGTAG+TGG | 0.485495 | 1_3:+40260868 | Msa0118000:CDS |
| TACTGCACTGTTATCTCTCT+CGG | 0.487895 | 1_3:+40259647 | Msa0118000:CDS |
| GAATCATCACAGCCGTTGGC+TGG | 0.490915 | 1_3:-40259714 | None:intergenic |
| TTTGTGTTGTAATTTCTTGC+GGG | 0.493711 | 1_3:+40261592 | Msa0118000:three_prime_UTR |
| ATTGTCTTCACCATAAAACT+TGG | 0.503168 | 1_3:-40261260 | None:intergenic |
| TAGAGAAACAAAACAAAAGA+AGG | 0.509554 | 1_3:+40260895 | Msa0118000:CDS |
| AGTGTTATGATAGTAATGAA+TGG | 0.510545 | 1_3:+40260831 | Msa0118000:CDS |
| TCATTTATATAGATTGGAGA+TGG | 0.513170 | 1_3:+40260693 | Msa0118000:intron |
| CGATCGATGAGTAGTTTGTT+GGG | 0.513939 | 1_3:+40261340 | Msa0118000:CDS |
| TTGGCTGGTTTCCCGATCGG+TGG | 0.518762 | 1_3:-40259699 | None:intergenic |
| ATATAATATTTACAAATATG+AGG | 0.519294 | 1_3:+40259505 | Msa0118000:exon |
| CCGTTGGCTGGTTTCCCGAT+CGG | 0.519531 | 1_3:-40259702 | None:intergenic |
| ATTTGTGTTGTAATTTCTTG+CGG | 0.519726 | 1_3:+40261591 | Msa0118000:three_prime_UTR |
| TGCAGTCGAGTTAATGGAAG+AGG | 0.520583 | 1_3:+40261067 | Msa0118000:CDS |
| GATCGACTACTCCCACCGAT+CGG | 0.531970 | 1_3:+40259687 | Msa0118000:CDS |
| TCATAAATAACAATAGACTT+TGG | 0.532209 | 1_3:-40259454 | None:intergenic |
| TGTGAGCATCATTTAGGGAA+AGG | 0.539369 | 1_3:+40261130 | Msa0118000:CDS |
| GATCAACCGGTCACAGGTGG+TGG | 0.541227 | 1_3:+40259566 | Msa0118000:CDS |
| TGGCTGGTTTCCCGATCGGT+GGG | 0.543310 | 1_3:-40259698 | None:intergenic |
| GGGACAAACAATCAGTGATC+TGG | 0.552513 | 1_3:+40261360 | Msa0118000:CDS |
| TGTGATTTGCAGGTAGAAGA+TGG | 0.559441 | 1_3:+40260012 | Msa0118000:intron |
| TAGTAATGAATGGGATGAAG+AGG | 0.560430 | 1_3:+40260841 | Msa0118000:CDS |
| GTACTAATCGCAAAATACTA+GGG | 0.561295 | 1_3:+40261408 | Msa0118000:three_prime_UTR |
| GTGTTATGATAGTAATGAAT+GGG | 0.561410 | 1_3:+40260832 | Msa0118000:CDS |
| TGTAAGAAATAGGTCTATTG+TGG | 0.562415 | 1_3:+40261174 | Msa0118000:CDS |
| CAACATGATCAACCGGTCAC+AGG | 0.565198 | 1_3:+40259560 | Msa0118000:CDS |
| GAGTTAATGGAAGAGGATGG+AGG | 0.574908 | 1_3:+40261074 | Msa0118000:CDS |
| GAGTGCACAAACTTCAACTG+AGG | 0.575039 | 1_3:+40260540 | Msa0118000:CDS |
| GTGATTTGCAGGTAGAAGAT+GGG | 0.581315 | 1_3:+40260013 | Msa0118000:intron |
| AGAGGTGGTGCGCTTATGGA+AGG | 0.587002 | 1_3:+40261037 | Msa0118000:CDS |
| AGTAGTCGATCAGACGGCTG+AGG | 0.594515 | 1_3:-40259675 | None:intergenic |
| TAAAGAAGAAGAGGTAGTGG+TGG | 0.595967 | 1_3:+40260871 | Msa0118000:CDS |
| AGAGAATAACCGACTAGTGT+TGG | 0.599308 | 1_3:-40261106 | None:intergenic |
| GTTGCACCACCACCTGTGAC+CGG | 0.601392 | 1_3:-40259572 | None:intergenic |
| TTGCAGGTAGAAGATGGGAG+AGG | 0.602099 | 1_3:+40260018 | Msa0118000:intron |
| GTGCGCTTATGGAAGGTTCG+CGG | 0.612805 | 1_3:+40261044 | Msa0118000:CDS |
| TGCAGGTAGAAGATGGGAGA+GGG | 0.613399 | 1_3:+40260019 | Msa0118000:intron |
| GTCGAGTTAATGGAAGAGGA+TGG | 0.615801 | 1_3:+40261071 | Msa0118000:CDS |
| TAGGGAATCATCACAGCCGT+TGG | 0.624031 | 1_3:-40259718 | None:intergenic |
| AGAGGGCATGTCAAGAAAGG+GGG | 0.627383 | 1_3:+40260036 | Msa0118000:CDS |
| ATGGTGAAGACAATGATGAG+AGG | 0.630239 | 1_3:+40261269 | Msa0118000:CDS |
| ACAAACAATCAGTGATCTGG+TGG | 0.630725 | 1_3:+40261363 | Msa0118000:CDS |
| GACAAAAGGGTAATGATACC+AGG | 0.635672 | 1_3:+40260058 | Msa0118000:CDS |
| GAGAGGGCATGTCAAGAAAG+GGG | 0.638539 | 1_3:+40260035 | Msa0118000:CDS |
| TGTTGTCAACCAACACTAGT+CGG | 0.655661 | 1_3:+40261097 | Msa0118000:CDS |
| AACCATTGATGATTGCGAAG+AGG | 0.657323 | 1_3:+40261293 | Msa0118000:CDS |
| AGGCCTTCTAGTCATAAACA+AGG | 0.659693 | 1_3:+40260577 | Msa0118000:CDS |
| CATGATCAACCGGTCACAGG+TGG | 0.668404 | 1_3:+40259563 | Msa0118000:CDS |
| TTTCCTCTAAAGAAACGGAG+AGG | 0.668761 | 1_3:+40260734 | Msa0118000:CDS |
| GGTGGGAGTAGTCGATCAGA+CGG | 0.671530 | 1_3:-40259681 | None:intergenic |
| CCGATCGGGAAACCAGCCAA+CGG | 0.672458 | 1_3:+40259702 | Msa0118000:CDS |
| ATAGATTGGAGATGGAACGA+CGG | 0.693875 | 1_3:+40260701 | Msa0118000:intron |
| GAAGAGGATGAAGATTGGAA+TGG | 0.694087 | 1_3:+40261309 | Msa0118000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATATTTACAAATATG+AGG | + | chr1_3:40259505-40259524 | Msa0118000:exon | 10.0% |
| !! | TATTAATGTGTTATATTTAT+TGG | + | chr1_3:40260605-40260624 | Msa0118000:intron | 10.0% |
| !! | TAAAATCAAAATAAAAAAGA+AGG | + | chr1_3:40261012-40261031 | Msa0118000:intron | 10.0% |
| !! | AAAAAAAAGAAACATTACAT+AGG | - | chr1_3:40259984-40260003 | None:intergenic | 15.0% |
| !!! | GATTTTATAAACATCATATA+AGG | - | chr1_3:40260999-40261018 | None:intergenic | 15.0% |
| !!! | TTTAGTTTCATAAACAAGAT+AGG | + | chr1_3:40259336-40259355 | Msa0118000:five_prime_UTR | 20.0% |
| !! | TCATAAATAACAATAGACTT+TGG | - | chr1_3:40259457-40259476 | None:intergenic | 20.0% |
| !!! | ATTTTATTTCACATTCACAA+AGG | + | chr1_3:40259894-40259913 | Msa0118000:intron | 20.0% |
| !!! | AATATTTTTGAAAGACACAA+AGG | + | chr1_3:40259920-40259939 | Msa0118000:intron | 20.0% |
| !!! | ATATTTTTGAAAGACACAAA+GGG | + | chr1_3:40259921-40259940 | Msa0118000:intron | 20.0% |
| !! | AATAATTTCATGTCTTTCTT+TGG | - | chr1_3:40260099-40260118 | None:intergenic | 20.0% |
| !!! | TTTTTACTATGAGATATTCA+TGG | - | chr1_3:40260131-40260150 | None:intergenic | 20.0% |
| !! | GAATATCTCATAGTAAAAAA+AGG | + | chr1_3:40260132-40260151 | Msa0118000:intron | 20.0% |
| !! | AAAAGATATGTGATGTAAAT+GGG | - | chr1_3:40260411-40260430 | None:intergenic | 20.0% |
| !! | AAAAAGATATGTGATGTAAA+TGG | - | chr1_3:40260412-40260431 | None:intergenic | 20.0% |
| !!! | CTATTGTCATTTATATAGAT+TGG | + | chr1_3:40260687-40260706 | Msa0118000:intron | 20.0% |
| !! | AAAATAAAAAAGAAGGTAAG+AGG | + | chr1_3:40261019-40261038 | Msa0118000:intron | 20.0% |
| !! | CTAAATTTGGGTTTAGATTT+CGG | - | chr1_3:40259395-40259414 | None:intergenic | 25.0% |
| ! | CTATAGAAGGATCTAAATTT+GGG | - | chr1_3:40259407-40259426 | None:intergenic | 25.0% |
| ! | ACTATAGAAGGATCTAAATT+TGG | - | chr1_3:40259408-40259427 | None:intergenic | 25.0% |
| ! | GAAAAATCACATACTATAGA+AGG | - | chr1_3:40259420-40259439 | None:intergenic | 25.0% |
| !!! | TATTTTTGAAAGACACAAAG+GGG | + | chr1_3:40259922-40259941 | Msa0118000:intron | 25.0% |
| !! | ACCAACCATATTAATTTTAG+TGG | + | chr1_3:40259956-40259975 | Msa0118000:intron | 25.0% |
| ! | TCCACTAAAATTAATATGGT+TGG | - | chr1_3:40259960-40259979 | None:intergenic | 25.0% |
| ! | AGGATCCACTAAAATTAATA+TGG | - | chr1_3:40259964-40259983 | None:intergenic | 25.0% |
| ! | GTAAAAAAAGGTGAAAAACA+TGG | + | chr1_3:40260144-40260163 | Msa0118000:intron | 25.0% |
| !!! | GTTTTGAGAAAAAAAACGAT+CGG | - | chr1_3:40260321-40260340 | None:intergenic | 25.0% |
| ! | AAAGATATGTGATGTAAATG+GGG | - | chr1_3:40260410-40260429 | None:intergenic | 25.0% |
| ! | TTGTGTGATATTTATGTTTG+TGG | + | chr1_3:40260492-40260511 | Msa0118000:intron | 25.0% |
| ! | TCATTTATATAGATTGGAGA+TGG | + | chr1_3:40260693-40260712 | Msa0118000:intron | 25.0% |
| ! | AGTGTTATGATAGTAATGAA+TGG | + | chr1_3:40260831-40260850 | Msa0118000:CDS | 25.0% |
| ! | GTGTTATGATAGTAATGAAT+GGG | + | chr1_3:40260832-40260851 | Msa0118000:CDS | 25.0% |
| ! | TAGAGAAACAAAACAAAAGA+AGG | + | chr1_3:40260895-40260914 | Msa0118000:CDS | 25.0% |
| ! | ATATTTCATGTACTTCAGAT+TGG | + | chr1_3:40261446-40261465 | Msa0118000:three_prime_UTR | 25.0% |
| ! | TATTTCATGTACTTCAGATT+GGG | + | chr1_3:40261447-40261466 | Msa0118000:three_prime_UTR | 25.0% |
| ! | ATTTGTGTTGTAATTTCTTG+CGG | + | chr1_3:40261591-40261610 | Msa0118000:three_prime_UTR | 25.0% |
| ATCTTGTGACATAGATTCAT+AGG | + | chr1_3:40259482-40259501 | Msa0118000:five_prime_UTR | 30.0% | |
| ! | TTTTGTCCAACCTTTTACAA+AGG | + | chr1_3:40259854-40259873 | Msa0118000:intron | 30.0% |
| ! | TTTGTCCAACCTTTTACAAA+GGG | + | chr1_3:40259855-40259874 | Msa0118000:intron | 30.0% |
| ! | TGGTTTTTCATTTCTTTACC+TGG | - | chr1_3:40260079-40260098 | None:intergenic | 30.0% |
| TTACTATGAGATATTCATGG+AGG | - | chr1_3:40260128-40260147 | None:intergenic | 30.0% | |
| TGCCTGTTAAATCAAGTTAT+GGG | - | chr1_3:40260173-40260192 | None:intergenic | 30.0% | |
| ATGCCTGTTAAATCAAGTTA+TGG | - | chr1_3:40260174-40260193 | None:intergenic | 30.0% | |
| AAGATATGTGATGTAAATGG+GGG | - | chr1_3:40260409-40260428 | None:intergenic | 30.0% | |
| ACTTCAAGGTGAAAAAGAAA+AGG | - | chr1_3:40260461-40260480 | None:intergenic | 30.0% | |
| TTATGTTTGTGGATGTGAAT+AGG | + | chr1_3:40260503-40260522 | Msa0118000:intron | 30.0% | |
| ! | TTACCTTGTTTATGACTAGA+AGG | - | chr1_3:40260583-40260602 | None:intergenic | 30.0% |
| !! | AAGCTTTTCCTCTAAAGAAA+CGG | + | chr1_3:40260729-40260748 | Msa0118000:CDS | 30.0% |
| ATAAAAAAGAAGGTAAGAGG+TGG | + | chr1_3:40261022-40261041 | Msa0118000:intron | 30.0% | |
| TGTAAGAAATAGGTCTATTG+TGG | + | chr1_3:40261174-40261193 | Msa0118000:CDS | 30.0% | |
| ! | GAAAAGCTAACCAAGTTTTA+TGG | + | chr1_3:40261250-40261269 | Msa0118000:CDS | 30.0% |
| ATTGTCTTCACCATAAAACT+TGG | - | chr1_3:40261263-40261282 | None:intergenic | 30.0% | |
| AGTACTAATCGCAAAATACT+AGG | + | chr1_3:40261407-40261426 | Msa0118000:three_prime_UTR | 30.0% | |
| GTACTAATCGCAAAATACTA+GGG | + | chr1_3:40261408-40261427 | Msa0118000:three_prime_UTR | 30.0% | |
| TTTGTGTTGTAATTTCTTGC+GGG | + | chr1_3:40261592-40261611 | Msa0118000:three_prime_UTR | 30.0% | |
| !! | AAGAATGCGTTGTTTGATTT+TGG | + | chr1_3:40261646-40261665 | Msa0118000:three_prime_UTR | 30.0% |
| CACTAAGATATGTTCTTGGT+TGG | - | chr1_3:40259237-40259256 | None:intergenic | 35.0% | |
| CTCTCACTAAGATATGTTCT+TGG | - | chr1_3:40259241-40259260 | None:intergenic | 35.0% | |
| ! | TGAGAGAAAGAAAGTGCATT+AGG | + | chr1_3:40259255-40259274 | Msa0118000:five_prime_UTR | 35.0% |
| ! | AGAGAGTAGAGTAAGCTTTT+CGG | - | chr1_3:40259533-40259552 | None:intergenic | 35.0% |
| ! | TCATGAGTGCAAGAAAGTTT+TGG | - | chr1_3:40259621-40259640 | None:intergenic | 35.0% |
| AAATTTCTTGCTTCTTGTGC+TGG | - | chr1_3:40259746-40259765 | None:intergenic | 35.0% | |
| ! | GCACAAGAAGCAAGAAATTT+TGG | + | chr1_3:40259746-40259765 | Msa0118000:CDS | 35.0% |
| TCTAACCCTTTGTAAAAGGT+TGG | - | chr1_3:40259863-40259882 | None:intergenic | 35.0% | |
| CCAATCTAACCCTTTGTAAA+AGG | - | chr1_3:40259867-40259886 | None:intergenic | 35.0% | |
| ! | CCTTTTACAAAGGGTTAGAT+TGG | + | chr1_3:40259864-40259883 | Msa0118000:intron | 35.0% |
| GACCCATAACTTGATTTAAC+AGG | + | chr1_3:40260168-40260187 | Msa0118000:intron | 35.0% | |
| ! | AACGATCGGTTTAGATAAGA+GGG | - | chr1_3:40260307-40260326 | None:intergenic | 35.0% |
| ! | AAACGATCGGTTTAGATAAG+AGG | - | chr1_3:40260308-40260327 | None:intergenic | 35.0% |
| !! | CTTTTTCACCTTGAAGTGTA+TGG | + | chr1_3:40260464-40260483 | Msa0118000:intron | 35.0% |
| CAATTACACCATACACTTCA+AGG | - | chr1_3:40260475-40260494 | None:intergenic | 35.0% | |
| TTTGTGGATGTGAATAGGAA+TGG | + | chr1_3:40260508-40260527 | Msa0118000:intron | 35.0% | |
| TAGTAATGAATGGGATGAAG+AGG | + | chr1_3:40260841-40260860 | Msa0118000:CDS | 35.0% | |
| GGAAGATCATAAAGAAGAAG+AGG | + | chr1_3:40260862-40260881 | Msa0118000:CDS | 35.0% | |
| TCATAAAGAAGAAGAGGTAG+TGG | + | chr1_3:40260868-40260887 | Msa0118000:CDS | 35.0% | |
| TCTCTTTGTGAGCATCATTT+AGG | + | chr1_3:40261124-40261143 | Msa0118000:CDS | 35.0% | |
| CTCTTTGTGAGCATCATTTA+GGG | + | chr1_3:40261125-40261144 | Msa0118000:CDS | 35.0% | |
| GCATGACAAGTGTAAGAAAT+AGG | + | chr1_3:40261164-40261183 | Msa0118000:CDS | 35.0% | |
| !!! | TTGGTTAGCTTTTCAAGAGA+TGG | - | chr1_3:40261244-40261263 | None:intergenic | 35.0% |
| !! | GTTCTTGGTTGGTTTCTATC+TGG | - | chr1_3:40259226-40259245 | None:intergenic | 40.0% |
| CAGATCTCAACATGATCAAC+CGG | + | chr1_3:40259553-40259572 | Msa0118000:CDS | 40.0% | |
| TACTGCACTGTTATCTCTCT+CGG | + | chr1_3:40259647-40259666 | Msa0118000:CDS | 40.0% | |
| ! | TGTGATTTGCAGGTAGAAGA+TGG | + | chr1_3:40260012-40260031 | Msa0118000:intron | 40.0% |
| ! | GTGATTTGCAGGTAGAAGAT+GGG | + | chr1_3:40260013-40260032 | Msa0118000:intron | 40.0% |
| GACAAAAGGGTAATGATACC+AGG | + | chr1_3:40260058-40260077 | Msa0118000:CDS | 40.0% | |
| TACCTTCTTGTGCAGCTAAA+GGG | - | chr1_3:40260362-40260381 | None:intergenic | 40.0% | |
| TTATGACTAGAAGGCCTTGA+AGG | - | chr1_3:40260574-40260593 | None:intergenic | 40.0% | |
| AGGCCTTCTAGTCATAAACA+AGG | + | chr1_3:40260577-40260596 | Msa0118000:CDS | 40.0% | |
| ATAGATTGGAGATGGAACGA+CGG | + | chr1_3:40260701-40260720 | Msa0118000:intron | 40.0% | |
| ! | TTTCCTCTAAAGAAACGGAG+AGG | + | chr1_3:40260734-40260753 | Msa0118000:CDS | 40.0% |
| ! | TAAAGAAGAAGAGGTAGTGG+TGG | + | chr1_3:40260871-40260890 | Msa0118000:CDS | 40.0% |
| TGTTGTCAACCAACACTAGT+CGG | + | chr1_3:40261097-40261116 | Msa0118000:CDS | 40.0% | |
| AGAGAATAACCGACTAGTGT+TGG | - | chr1_3:40261109-40261128 | None:intergenic | 40.0% | |
| TGTGAGCATCATTTAGGGAA+AGG | + | chr1_3:40261130-40261149 | Msa0118000:CDS | 40.0% | |
| ! | GGAGGTTCAGTTTGAGATAT+TGG | - | chr1_3:40261223-40261242 | None:intergenic | 40.0% |
| !!! | GTTAGCTTTTCAAGAGATGG+AGG | - | chr1_3:40261241-40261260 | None:intergenic | 40.0% |
| ATGGTGAAGACAATGATGAG+AGG | + | chr1_3:40261269-40261288 | Msa0118000:CDS | 40.0% | |
| ! | AACCATTGATGATTGCGAAG+AGG | + | chr1_3:40261293-40261312 | Msa0118000:CDS | 40.0% |
| ATCCTCTTCGCAATCATCAA+TGG | - | chr1_3:40261298-40261317 | None:intergenic | 40.0% | |
| ATTGCGAAGAGGATGAAGAT+TGG | + | chr1_3:40261304-40261323 | Msa0118000:CDS | 40.0% | |
| GAAGAGGATGAAGATTGGAA+TGG | + | chr1_3:40261309-40261328 | Msa0118000:CDS | 40.0% | |
| !! | CGATCGATGAGTAGTTTGTT+GGG | + | chr1_3:40261340-40261359 | Msa0118000:CDS | 40.0% |
| ACAAACAATCAGTGATCTGG+TGG | + | chr1_3:40261363-40261382 | Msa0118000:CDS | 40.0% | |
| TGAACTTGCACTCACGTATA+AGG | - | chr1_3:40261498-40261517 | None:intergenic | 40.0% | |
| !! | TTGCTTCTTGTGCTGGCTTA+GGG | - | chr1_3:40259739-40259758 | None:intergenic | 45.0% |
| ! | TTTGTGTGCGTGTGATTTGC+AGG | + | chr1_3:40260002-40260021 | Msa0118000:intron | 45.0% |
| TGTCAAGAAAGGGGGACAAA+AGG | + | chr1_3:40260044-40260063 | Msa0118000:CDS | 45.0% | |
| GTCAAGAAAGGGGGACAAAA+GGG | + | chr1_3:40260045-40260064 | Msa0118000:CDS | 45.0% | |
| CAGCTAAAGGGCAAATTGGT+AGG | - | chr1_3:40260350-40260369 | None:intergenic | 45.0% | |
| TGTGCAGCTAAAGGGCAAAT+TGG | - | chr1_3:40260354-40260373 | None:intergenic | 45.0% | |
| CTACCTTCTTGTGCAGCTAA+AGG | - | chr1_3:40260363-40260382 | None:intergenic | 45.0% | |
| GAGTGCACAAACTTCAACTG+AGG | + | chr1_3:40260540-40260559 | Msa0118000:CDS | 45.0% | |
| ! | CTGAGGTTTTCTCTCCTTCA+AGG | + | chr1_3:40260557-40260576 | Msa0118000:CDS | 45.0% |
| CTTCCTCTCCGTTTCTTTAG+AGG | - | chr1_3:40260740-40260759 | None:intergenic | 45.0% | |
| AGAGGAAGCTTTGCGATGAA+TGG | + | chr1_3:40260752-40260771 | Msa0118000:CDS | 45.0% | |
| TGCAGTCGAGTTAATGGAAG+AGG | + | chr1_3:40261067-40261086 | Msa0118000:CDS | 45.0% | |
| GTCGAGTTAATGGAAGAGGA+TGG | + | chr1_3:40261071-40261090 | Msa0118000:CDS | 45.0% | |
| GAGTTAATGGAAGAGGATGG+AGG | + | chr1_3:40261074-40261093 | Msa0118000:CDS | 45.0% | |
| ! | GCGATCGATGAGTAGTTTGT+TGG | + | chr1_3:40261339-40261358 | Msa0118000:CDS | 45.0% |
| GGGACAAACAATCAGTGATC+TGG | + | chr1_3:40261360-40261379 | Msa0118000:CDS | 45.0% | |
| !!! | TTAATTTTGTTTTATTTTTT+TGG | + | chr1_3:40259806-40259825 | Msa0118000:intron | 5.0% |
| !!! | AATTATTTTATGAAATTATA+AGG | + | chr1_3:40260212-40260231 | Msa0118000:intron | 5.0% |
| !!! | TATTATTAAATTTAAGATAT+TGG | + | chr1_3:40261620-40261639 | Msa0118000:three_prime_UTR | 5.0% |
| CAACATGATCAACCGGTCAC+AGG | + | chr1_3:40259560-40259579 | Msa0118000:CDS | 50.0% | |
| TAGGGAATCATCACAGCCGT+TGG | - | chr1_3:40259721-40259740 | None:intergenic | 50.0% | |
| !! | CTTGCTTCTTGTGCTGGCTT+AGG | - | chr1_3:40259740-40259759 | None:intergenic | 50.0% |
| TTGCAGGTAGAAGATGGGAG+AGG | + | chr1_3:40260018-40260037 | Msa0118000:intron | 50.0% | |
| TGCAGGTAGAAGATGGGAGA+GGG | + | chr1_3:40260019-40260038 | Msa0118000:intron | 50.0% | |
| ! | GGAGAGGGCATGTCAAGAAA+GGG | + | chr1_3:40260034-40260053 | Msa0118000:CDS | 50.0% |
| ! | GAGAGGGCATGTCAAGAAAG+GGG | + | chr1_3:40260035-40260054 | Msa0118000:CDS | 50.0% |
| ! | AGAGGGCATGTCAAGAAAGG+GGG | + | chr1_3:40260036-40260055 | Msa0118000:CDS | 50.0% |
| TGCCCTTTAGCTGCACAAGA+AGG | + | chr1_3:40260357-40260376 | Msa0118000:intron | 50.0% | |
| GCACAAGAAGGTAGATCGAG+TGG | + | chr1_3:40260369-40260388 | Msa0118000:intron | 50.0% | |
| GATCGAGTGGAACCAAATGC+TGG | + | chr1_3:40260382-40260401 | Msa0118000:intron | 50.0% | |
| GTAAATGGGGGACCAGCATT+TGG | - | chr1_3:40260397-40260416 | None:intergenic | 50.0% | |
| CATGATCAACCGGTCACAGG+TGG | + | chr1_3:40259563-40259582 | Msa0118000:CDS | 55.0% | |
| AGTAGTCGATCAGACGGCTG+AGG | - | chr1_3:40259678-40259697 | None:intergenic | 55.0% | |
| GGTGGGAGTAGTCGATCAGA+CGG | - | chr1_3:40259684-40259703 | None:intergenic | 55.0% | |
| GATCGACTACTCCCACCGAT+CGG | + | chr1_3:40259687-40259706 | Msa0118000:CDS | 55.0% | |
| ATCGACTACTCCCACCGATC+GGG | + | chr1_3:40259688-40259707 | Msa0118000:CDS | 55.0% | |
| GAATCATCACAGCCGTTGGC+TGG | - | chr1_3:40259717-40259736 | None:intergenic | 55.0% | |
| ! | GGGAGAGGGCATGTCAAGAA+AGG | + | chr1_3:40260033-40260052 | Msa0118000:CDS | 55.0% |
| GGTAAGAGGTGGTGCGCTTA+TGG | + | chr1_3:40261033-40261052 | Msa0118000:CDS | 55.0% | |
| AGAGGTGGTGCGCTTATGGA+AGG | + | chr1_3:40261037-40261056 | Msa0118000:CDS | 55.0% | |
| GTGCGCTTATGGAAGGTTCG+CGG | + | chr1_3:40261044-40261063 | Msa0118000:CDS | 55.0% | |
| TCGCGGTGCAGTCGAGTTAA+TGG | + | chr1_3:40261061-40261080 | Msa0118000:CDS | 55.0% | |
| GATCAACCGGTCACAGGTGG+TGG | + | chr1_3:40259566-40259585 | Msa0118000:CDS | 60.0% | |
| GTTGCACCACCACCTGTGAC+CGG | - | chr1_3:40259575-40259594 | None:intergenic | 60.0% | |
| !! | TGGCTGGTTTCCCGATCGGT+GGG | - | chr1_3:40259701-40259720 | None:intergenic | 60.0% |
| !! | TTGGCTGGTTTCCCGATCGG+TGG | - | chr1_3:40259702-40259721 | None:intergenic | 60.0% |
| !! | CCGTTGGCTGGTTTCCCGAT+CGG | - | chr1_3:40259705-40259724 | None:intergenic | 60.0% |
| CCGATCGGGAAACCAGCCAA+CGG | + | chr1_3:40259702-40259721 | Msa0118000:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 40259196 | 40261697 | 40259196 | ID=Msa0118000;Name=Msa0118000 |
| chr1_3 | mRNA | 40259196 | 40261697 | 40259196 | ID=Msa0118000-mRNA-1;Parent=Msa0118000;Name=Msa0118000-mRNA-1;_AED=0.11;_eAED=0.11;_QI=326|1|1|1|1|1|5|292|320 |
| chr1_3 | exon | 40259196 | 40259767 | 40259196 | ID=Msa0118000-mRNA-1:exon:12269;Parent=Msa0118000-mRNA-1 |
| chr1_3 | exon | 40260024 | 40260079 | 40260024 | ID=Msa0118000-mRNA-1:exon:12270;Parent=Msa0118000-mRNA-1 |
| chr1_3 | exon | 40260525 | 40260598 | 40260525 | ID=Msa0118000-mRNA-1:exon:12271;Parent=Msa0118000-mRNA-1 |
| chr1_3 | exon | 40260705 | 40260916 | 40260705 | ID=Msa0118000-mRNA-1:exon:12272;Parent=Msa0118000-mRNA-1 |
| chr1_3 | exon | 40261031 | 40261697 | 40261031 | ID=Msa0118000-mRNA-1:exon:12273;Parent=Msa0118000-mRNA-1 |
| chr1_3 | five_prime_UTR | 40259196 | 40259521 | 40259196 | ID=Msa0118000-mRNA-1:five_prime_utr;Parent=Msa0118000-mRNA-1 |
| chr1_3 | CDS | 40259522 | 40259767 | 40259522 | ID=Msa0118000-mRNA-1:cds;Parent=Msa0118000-mRNA-1 |
| chr1_3 | CDS | 40260024 | 40260079 | 40260024 | ID=Msa0118000-mRNA-1:cds;Parent=Msa0118000-mRNA-1 |
| chr1_3 | CDS | 40260525 | 40260598 | 40260525 | ID=Msa0118000-mRNA-1:cds;Parent=Msa0118000-mRNA-1 |
| chr1_3 | CDS | 40260705 | 40260916 | 40260705 | ID=Msa0118000-mRNA-1:cds;Parent=Msa0118000-mRNA-1 |
| chr1_3 | CDS | 40261031 | 40261405 | 40261031 | ID=Msa0118000-mRNA-1:cds;Parent=Msa0118000-mRNA-1 |
| chr1_3 | three_prime_UTR | 40261406 | 40261697 | 40261406 | ID=Msa0118000-mRNA-1:three_prime_utr;Parent=Msa0118000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
