AlfalfaGEDB | Msa0095150

M. sativa cultivar zhongmu-4 / Msa0095150

KEGG: K02640
GO: -
PFAM: PF02529.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0095150	WP_202958637.1	77.333	75	17	0	1	75	4	78	4.50e-33	119

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0095150	sp\|A4QLL3\|PETG_LOBMA	100.000	36	0	0	39	74	1	36	6.76e-18	72.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0095150	A0A396GH67	97.872	47	1	0	29	75	25	71	3.76e-24	95.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa0095150	0.819880	9.203804e-53	-8.615850e-47
Msa0002690	Msa0095150	0.835534	1.586683e-56	-8.615850e-47
Msa0002700	Msa0095150	0.834564	2.786908e-56	-8.615850e-47
Msa0004180	Msa0095150	0.808121	3.618174e-50	-8.615850e-47
Msa0005500	Msa0095150	0.823955	1.048214e-53	-8.615850e-47
Msa0011410	Msa0095150	0.826185	3.116527e-54	-8.615850e-47
Msa0011440	Msa0095150	0.813746	2.189282e-51	-8.615850e-47
Msa0011450	Msa0095150	0.813846	2.081548e-51	-8.615850e-47
Msa0020080	Msa0095150	0.815445	9.212417e-52	-8.615850e-47
Msa0021570	Msa0095150	0.827514	1.499780e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0095150	MtrunA17_Chr8g0355631	97.872	47	1	29	75	25	71	7.25e-28	95.5
Msa0095150	MtrunA17_Chr4g0015761	97.872	47	1	29	75	25	71	8.54e-28	95.1
Msa0095150	MtrunA17_CPg0492811	97.872	47	1	29	75	25	71	8.54e-28	95.1
Msa0095150	MtrunA17_Chr4g0016861	100.000	35	0	39	73	1	35	3.92e-18	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0095150	ATCG00600.1	97.222	36	1	0	39	74	1	36	1.27e-17	68.9

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Find 16 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTCAATCATTTGAGTT+TGG	0.328054	1_2:+79013262	None:intergenic
AATAATCCAGCCAAAGTAAT+AGG	0.315680	1_2:+79013210	None:intergenic
AATTGGCAATTGACATGATA+AGG	0.448909	1_2:+79013360	None:intergenic
AGGTCTAATTCCTATTACTT+TGG	0.388074	1_2:-79013220	Msa0095150:CDS
ATATCGACGTGGTGATCAGT+TGG	0.572503	1_2:-79013169	Msa0095150:CDS
ATCATTTGAGTTTGGTTGAA+AGG	0.406278	1_2:+79013270	None:intergenic
ATGATTGAAGTTTCTCTATT+TGG	0.115333	1_2:-79013252	Msa0095150:CDS
CTAATTCCTATTACTTTGGC+TGG	0.352028	1_2:-79013216	Msa0095150:CDS
GAATCTCAATGACCAAGAAT+TGG	0.414372	1_2:+79013343	None:intergenic
GCATATTTACAATATCGACG+TGG	0.789819	1_2:-79013180	Msa0095150:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTAGAAAACCGAAATAAC+TGG	+	chr1_2:79013400-79013419	None:intergenic	30.0%
AATTGGCAATTGACATGATA+AGG	+	chr1_2:79013538-79013557	None:intergenic	30.0%
TCAATACAGATTCCTATTGA+AGG	-	chr1_2:79013579-79013598	Msa0095150:intron	30.0%
GGTAATATCTATCCTTCAAT+AGG	+	chr1_2:79013594-79013613	None:intergenic	30.0%
TTGGTTGAAAGGAAAAAAGT+GGG	+	chr1_2:79013617-79013636	None:intergenic	30.0%
TTTGGTTGAAAGGAAAAAAG+TGG	+	chr1_2:79013618-79013637	None:intergenic	30.0%
AGGTCTAATTCCTATTACTT+TGG	-	chr1_2:79013675-79013694	Msa0095150:intron	30.0%
AATAATCCAGCCAAAGTAAT+AGG	+	chr1_2:79013688-79013707	None:intergenic	30.0%
TTTGGCTGGATTATTTGTAA+CGG	-	chr1_2:79013693-79013712	Msa0095150:intron	30.0%
CCGAAATAACTGGTTATAGT+GGG	+	chr1_2:79013390-79013409	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	79013161	79013756	79013161	ID=Msa0095150;Name=Msa0095150
chr1_2	mRNA	79013161	79013756	79013161	ID=Msa0095150-mRNA-1;Parent=Msa0095150;Name=Msa0095150-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|75
chr1_2	exon	79013753	79013756	79013753	ID=Msa0095150-mRNA-1:exon:28066;Parent=Msa0095150-mRNA-1
chr1_2	exon	79013161	79013384	79013161	ID=Msa0095150-mRNA-1:exon:28065;Parent=Msa0095150-mRNA-1
chr1_2	CDS	79013753	79013756	79013753	ID=Msa0095150-mRNA-1:cds;Parent=Msa0095150-mRNA-1
chr1_2	CDS	79013161	79013384	79013161	ID=Msa0095150-mRNA-1:cds;Parent=Msa0095150-mRNA-1

Gene Sequence	>Msa0095150 ATGGTTCCTTATCATGTCAATTGCCAATTCTTGGTCATTGAGATTCACGGTCAATACAGATTCCTATTGAAGGATAGATATTACCCCCACTTTTTTCCTTTCAACCAAACTCAAATGATTGAAGTTTCTCTATTTGGAATCGTGTTAGGTCTAATTCCTATTACTTTGGCTGGATTATTTGTAACGGCATATTTACAATATCGACGTGGTGATCAGTTGGATATTTGA
Protein sequence	>Msa0095150 MVPYHVNCQFLVIEIHGQYRFLLKDRYYPHFFPFNQTQMIEVSLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDI*