AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0869060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0869060 MtrunA17_Chr6g0449891 97.613 419 9 1 6 424 1 418 0.0 825
Msa0869060 MtrunA17_Chr4g0058971 72.787 305 80 1 113 417 79 380 8.95e-162 460
Msa0869060 MtrunA17_Chr3g0117501 69.725 327 95 2 95 421 87 409 1.25e-157 451
Msa0869060 MtrunA17_Chr2g0288011 46.358 302 154 4 115 414 100 395 4.88e-76 242
Msa0869060 MtrunA17_Chr3g0097931 43.548 310 171 3 105 414 96 401 7.03e-74 236
Msa0869060 MtrunA17_Chr4g0074541 39.416 411 208 8 13 414 14 392 1.59e-73 235
Msa0869060 MtrunA17_Chr2g0291851 45.253 316 165 6 100 411 81 392 1.78e-72 233
Msa0869060 MtrunA17_Chr4g0046561 41.776 304 160 7 116 413 96 388 1.59e-67 220
Msa0869060 MtrunA17_Chr5g0419001 36.888 347 199 7 91 424 65 404 3.98e-62 206
Msa0869060 MtrunA17_Chr4g0008071 29.630 297 194 7 125 414 19 307 8.30e-24 100
Msa0869060 MtrunA17_Chr3g0114581 28.846 312 191 11 126 421 22 318 1.65e-23 100
Msa0869060 MtrunA17_Chr1g0160071 28.076 317 212 10 104 415 2 307 1.24e-22 98.2
Msa0869060 MtrunA17_Chr8g0382081 27.393 303 201 5 121 414 14 306 4.20e-21 93.2
Msa0869060 MtrunA17_Chr3g0112981 28.146 302 198 7 122 414 28 319 1.90e-19 88.6
Msa0869060 MtrunA17_Chr5g0436341 27.243 301 202 5 122 414 12 303 1.99e-17 82.4
Msa0869060 MtrunA17_Chr4g0056661 26.246 301 207 6 121 414 55 347 1.28e-15 77.8
Msa0869060 MtrunA17_Chr8g0341861 23.101 316 218 7 117 416 167 473 8.59e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0869060 AT3G01550.1 67.847 339 104 4 84 420 46 381 2.08e-153 439
Msa0869060 AT5G33320.1 59.169 409 143 8 14 421 22 407 3.95e-151 434
Msa0869060 AT3G01550.2 66.667 339 103 5 84 420 46 376 1.25e-146 422
Msa0869060 AT5G17630.1 42.188 384 211 8 35 416 32 406 3.26e-82 259
Msa0869060 AT5G54800.1 39.529 382 220 5 38 413 11 387 1.09e-75 241
Msa0869060 AT1G61800.1 39.231 390 199 9 36 414 26 388 8.26e-74 236
Msa0869060 AT1G61800.2 38.718 390 201 9 36 414 26 388 4.97e-72 232
Msa0869060 AT5G46110.4 38.700 323 185 8 96 413 83 397 3.71e-66 217
Msa0869060 AT5G46110.1 38.700 323 185 8 96 413 83 397 3.82e-66 217
Msa0869060 AT5G46110.2 40.550 291 162 7 126 413 2 284 5.94e-65 210
Msa0869060 AT5G46110.3 37.461 323 178 9 96 413 83 386 3.97e-60 201
Msa0869060 AT4G03950.1 30.592 304 141 11 119 416 18 257 2.18e-26 107
Msa0869060 AT1G21870.1 28.383 303 188 9 126 415 22 308 2.13e-23 100
Msa0869060 AT1G77610.1 28.814 295 197 9 126 415 16 302 1.89e-22 97.8
Msa0869060 AT3G10290.1 25.545 321 228 5 99 414 38 352 1.38e-21 95.9
Msa0869060 AT1G12500.1 27.401 354 224 8 82 414 12 353 1.75e-21 95.5
Msa0869060 AT5G05820.1 29.560 318 204 7 102 414 3 305 5.27e-21 93.2
Msa0869060 AT3G11320.1 29.338 317 204 7 103 414 4 305 5.83e-21 93.2
Msa0869060 AT5G04160.1 26.885 305 212 6 115 414 8 306 1.29e-20 92.4
Msa0869060 AT2G25520.1 26.959 319 211 9 105 413 3 309 5.82e-16 79.3
Msa0869060 AT1G43310.1 75.556 45 11 0 233 277 43 87 8.99e-16 72.8
Msa0869060 AT1G06470.4 24.611 321 215 8 121 423 77 388 3.09e-15 77.4
Msa0869060 AT1G06470.2 24.611 321 215 8 121 423 77 388 3.09e-15 77.4
Msa0869060 AT1G06470.1 24.611 321 215 8 121 423 77 388 3.09e-15 77.4
Msa0869060 AT1G06470.3 24.611 321 215 8 121 423 77 388 3.09e-15 77.4
Msa0869060 AT5G11230.1 26.332 319 213 9 105 413 3 309 1.56e-14 75.1
Msa0869060 AT4G32390.1 26.498 317 215 10 105 413 3 309 9.04e-14 72.8
Msa0869060 AT5G25400.1 25.532 329 223 9 105 424 3 318 1.01e-13 72.4

Find 85 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAACAGATGCCTACTTTA+TGG 0.163343 6_1:-2892879 Msa0869060:intron
TGTTCTTTCATCCCTTCTTT+TGG 0.207239 6_1:-2893596 Msa0869060:CDS
AATTATGCTTCCTTTGTCTT+TGG 0.270898 6_1:+2890320 None:intergenic
ATCATGAAGTAACCTTAAAA+AGG 0.272883 6_1:+2890152 None:intergenic
GAAGGGAAACAACAAACTTC+TGG 0.281220 6_1:-2895289 Msa0869060:CDS
CCACTTAGACTCACCATTGA+TGG 0.288106 6_1:-2895439 Msa0869060:CDS
TCTTCTCTTCTACCTATAGT+TGG 0.295688 6_1:-2892850 Msa0869060:CDS
CTTCTCTTCTACCTATAGTT+GGG 0.300468 6_1:-2892849 Msa0869060:CDS
AGGTTTGATGAGAGAAAATA+AGG 0.305575 6_1:+2895580 None:intergenic
CCAGTTCGGCTTTGCTTCAT+TGG 0.318767 6_1:-2893925 Msa0869060:CDS
TTGGTTTCATGTTTGCTACT+TGG 0.322424 6_1:-2895246 Msa0869060:CDS
CACTCACACCATCAAATCTA+TGG 0.327426 6_1:-2893635 Msa0869060:CDS
TGGAATGTTGTAACTGTTGC+TGG 0.349362 6_1:+2893945 None:intergenic
GCTTCCTTTGTCTTTGGCAC+TGG 0.363988 6_1:+2890326 None:intergenic
ATTTGGTGGCAGGTTTCATA+TGG 0.368164 6_1:-2890736 Msa0869060:intron
ACTTGCCGTGGCTCATACAT+TGG 0.369426 6_1:-2893704 Msa0869060:CDS
GCTATGTATAAGATCCGTTT+TGG 0.372703 6_1:-2891848 Msa0869060:CDS
CCTTCATCACTCTGTGCCTC+AGG 0.380559 6_1:+2895307 None:intergenic
GTTGTAACTGTTGCTGGAAA+TGG 0.381845 6_1:+2893951 None:intergenic
CATTGGTAATCAATTTGATC+TGG 0.388883 6_1:-2893908 Msa0869060:CDS
TGACAGGTGAGACAGGAGTT+TGG 0.392266 6_1:+2890626 None:intergenic
CTTCAACATTTACAACAAAC+AGG 0.393424 6_1:-2895206 Msa0869060:intron
GAAAGGTTCCATAGATTTGA+TGG 0.395306 6_1:+2893627 None:intergenic
CCAATGAAGCAAAGCCGAAC+TGG 0.397512 6_1:+2893925 None:intergenic
TGAACAGATGCCTACTTTAT+GGG 0.406348 6_1:-2892878 Msa0869060:intron
TTAACTCTTTCAAAAGAGTA+AGG 0.418575 6_1:-2890299 Msa0869060:three_prime_UTR
CTTGCCGTGGCTCATACATT+GGG 0.418644 6_1:-2893703 Msa0869060:CDS
CTTGTTCAGTCTCTTCAGCT+TGG 0.421995 6_1:-2895265 Msa0869060:CDS
TGACTGAAGTCTCTTTCAAT+TGG 0.437171 6_1:-2892807 Msa0869060:intron
TTTGGATTTGAAATGAAGAA+AGG 0.438772 6_1:+2895367 None:intergenic
AATTACATACCGCAGATTGC+AGG 0.448472 6_1:+2892201 None:intergenic
TATGTGGTTTGAAAGGTGTA+AGG 0.451066 6_1:+2895519 None:intergenic
GGAACTGCTATTGCACTTGT+TGG 0.456119 6_1:-2890383 Msa0869060:CDS
GCTCTCGAACATTCAATCCT+TGG 0.458325 6_1:+2891869 None:intergenic
AAGGGAAACAACAAACTTCT+GGG 0.458763 6_1:-2895288 Msa0869060:CDS
GTCTCACCTGTCAATGCCCT+TGG 0.465418 6_1:-2890616 Msa0869060:intron
CCTGAGGCACAGAGTGATGA+AGG 0.470545 6_1:-2895307 Msa0869060:CDS
TTCTCTTCTACCTATAGTTG+GGG 0.472836 6_1:-2892848 Msa0869060:CDS
ATGTTTCTGACAGGAAGCTT+TGG 0.475357 6_1:-2892321 Msa0869060:intron
ACCTCACCTGCTGGTATGCA+TGG 0.479845 6_1:+2891812 None:intergenic
TGCTGCTTCTTCTGTTCCTG+AGG 0.480346 6_1:-2895323 Msa0869060:CDS
ATATAGCATATGGTACCAAC+AGG 0.484432 6_1:+2892255 None:intergenic
GTTTGGTTATGTGGTTTGAA+AGG 0.492167 6_1:+2895512 None:intergenic
CCCTCCGAAAATATAGCATA+TGG 0.496477 6_1:+2892245 None:intergenic
AAAGAGAGAGAGATAGAGAG+AGG 0.505465 6_1:-2890275 Msa0869060:three_prime_UTR
ACAGTTACAACATTCCAGTT+CGG 0.514414 6_1:-2893939 Msa0869060:CDS
CCGCGATTGATTCGTAAGGT+TGG 0.514774 6_1:+2892441 None:intergenic
GACTTACCAAGGGCATTGAC+AGG 0.516195 6_1:+2890610 None:intergenic
AGGTGTAAGGTTGAAGAAGA+AGG 0.521775 6_1:+2895532 None:intergenic
ACATTACCTCACCCAAAAGA+AGG 0.524079 6_1:+2893584 None:intergenic
AGGGCATTGACAGGTGAGAC+AGG 0.524854 6_1:+2890619 None:intergenic
TTTGGTGGCAGGTTTCATAT+GGG 0.526674 6_1:-2890735 Msa0869060:intron
CATAGAGATTATGCATGTTG+AGG 0.527396 6_1:+2895560 None:intergenic
TTTCCGACTGAGTGTGTCAC+AGG 0.527740 6_1:+2890694 None:intergenic
GAAGCAGAATGCAGCCAAAA+CGG 0.532187 6_1:+2891834 None:intergenic
AATGTATGAGCCACGGCAAG+TGG 0.534798 6_1:+2893706 None:intergenic
GTTACTTCATGATCAAATGT+TGG 0.534841 6_1:-2890142 Msa0869060:three_prime_UTR
GTTTGGAAGAAAGAAGAAGA+TGG 0.535689 6_1:+2895406 None:intergenic
GAAGAAACCACCCATAAAGT+AGG 0.541772 6_1:+2892868 None:intergenic
GAAAGAACAACAGTGAAGAA+AGG 0.544323 6_1:+2893610 None:intergenic
CCATCAATGGTGAGTCTAAG+TGG 0.550995 6_1:+2895439 None:intergenic
AAGAGAGAGAGATAGAGAGA+GGG 0.555665 6_1:-2890274 Msa0869060:three_prime_UTR
CTGCTTCCATGCATACCAGC+AGG 0.555668 6_1:-2891818 Msa0869060:intron
ACCGAAAATTAGTAGATCAC+AGG 0.555814 6_1:-2893865 Msa0869060:intron
GACGAACATTAGTCTTGGCA+AGG 0.560588 6_1:-2893671 Msa0869060:CDS
TATGAGCCACGGCAAGTGGA+AGG 0.564903 6_1:+2893710 None:intergenic
TGGGCATGAAAATCCATCAA+TGG 0.566301 6_1:+2895426 None:intergenic
CATTCCGCGATTGATTCGTA+AGG 0.566766 6_1:+2892437 None:intergenic
AAAACTAATGGCTAATGAAG+AGG 0.569321 6_1:-2892404 Msa0869060:intron
TTTGGAAGAAAGAAGAAGAT+GGG 0.579779 6_1:+2895407 None:intergenic
GATTGGATTCAGCACTGCAA+TGG 0.589169 6_1:-2892467 Msa0869060:CDS
CATTACCTCACCCAAAAGAA+GGG 0.591595 6_1:+2893585 None:intergenic
TCTTGTATTCAAGGGCAAAG+AGG 0.597986 6_1:-2890355 Msa0869060:CDS
AGCAATCCTTCCACTTGCCG+TGG 0.598900 6_1:-2893716 Msa0869060:CDS
CTTCCTATATAGGCAAGCCA+AGG 0.608037 6_1:-2891886 Msa0869060:intron
TCTCTTCTACCTATAGTTGG+GGG 0.608716 6_1:-2892847 Msa0869060:CDS
ACAGATGCCTACTTTATGGG+TGG 0.618256 6_1:-2892875 Msa0869060:intron
TAAGCCAGTGCCAAAGACAA+AGG 0.620413 6_1:-2890330 Msa0869060:CDS
ATTCCCCAATGTATGAGCCA+CGG 0.635689 6_1:+2893699 None:intergenic
ACCGCAGATTGCAGGTACGA+AGG 0.647636 6_1:+2892209 None:intergenic
TCACCTGTGACACACTCAGT+CGG 0.658587 6_1:-2890697 Msa0869060:CDS
TCCTTCGTACCTGCAATCTG+CGG 0.661719 6_1:-2892210 Msa0869060:intron
TTGCCGTGGCTCATACATTG+GGG 0.675815 6_1:-2893702 Msa0869060:CDS
CTGAGGCACAGAGTGATGAA+GGG 0.684073 6_1:-2895306 Msa0869060:CDS
CCAACCTTACGAATCAATCG+CGG 0.759621 6_1:-2892441 Msa0869060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAATTTCAATACATTT+AGG - chr6_1:2892462-2892481 Msa0869060:CDS 10.0%
!! TTATAATTTCAATACATTTA+GGG - chr6_1:2892463-2892482 Msa0869060:CDS 10.0%
!!! ACAGGTATTTTTTTTTTTTA+AGG - chr6_1:2890479-2890498 Msa0869060:intron 15.0%
!! TATAAAGTTATTCATTTGAT+TGG - chr6_1:2890727-2890746 Msa0869060:CDS 15.0%
!!! TATCCTTATTTAAATAATTG+AGG - chr6_1:2893725-2893744 Msa0869060:intron 15.0%
!!! TAAAAAGCATTTACTATAAT+CGG + chr6_1:2894156-2894175 None:intergenic 15.0%
!!! TTTAAAATGAAACATTTTTC+TGG - chr6_1:2894265-2894284 Msa0869060:intron 15.0%
!!! AATAGTATATTTTGGTTTAT+AGG - chr6_1:2894540-2894559 Msa0869060:intron 15.0%
!! GAAAATTAAAAGAAGAAATA+TGG + chr6_1:2895175-2895194 None:intergenic 15.0%
!! AAAATAAAAAAATTGATGAG+TGG + chr6_1:2895447-2895466 None:intergenic 15.0%
!!! AAAGAAATGTCTTTTTAATT+TGG - chr6_1:2895600-2895619 Msa0869060:CDS 15.0%
!! TACTTATTAAGTCATTCATT+TGG - chr6_1:2890603-2890622 Msa0869060:intron 20.0%
!!! TCTCTAATGTATGTATATTT+TGG - chr6_1:2891163-2891182 Msa0869060:intron 20.0%
!!! AGAGTATCATAATTCAATAT+TGG + chr6_1:2891382-2891401 None:intergenic 20.0%
!!! ATCTATTTTGTTAGATAGTT+TGG - chr6_1:2892265-2892284 Msa0869060:CDS 20.0%
!!! ATCTTTTGTTAGTAAATTGA+CGG + chr6_1:2892324-2892343 None:intergenic 20.0%
!! TAAAAAGTCGTGATATTATA+AGG + chr6_1:2893544-2893563 None:intergenic 20.0%
!! AATTGAATAAAATTCATGCA+AGG - chr6_1:2893623-2893642 Msa0869060:CDS 20.0%
!! CTTCCTCAATTATTTAAATA+AGG + chr6_1:2893731-2893750 None:intergenic 20.0%
!! CATATTAATTATAATCTGCA+TGG - chr6_1:2893941-2893960 Msa0869060:CDS 20.0%
!!! TTTTTTTTTATATCCGGATA+TGG - chr6_1:2894030-2894049 Msa0869060:intron 20.0%
!!! GTCAATTTTTTTTTACACAT+GGG - chr6_1:2894287-2894306 Msa0869060:intron 20.0%
!!! GAATAAATATTGTTGACTTA+TGG - chr6_1:2894395-2894414 Msa0869060:intron 20.0%
!!! AACAGAAGATATTTTTTGTT+TGG - chr6_1:2894497-2894516 Msa0869060:intron 20.0%
!! AAGTAAGTTACTATTACTAA+AGG + chr6_1:2894868-2894887 None:intergenic 20.0%
!!! TTTTGAAAAGGGTGAAATTT+TGG + chr6_1:2890180-2890199 None:intergenic 25.0%
!!! GAGAATGAGTATTTTGAAAA+GGG + chr6_1:2890191-2890210 None:intergenic 25.0%
!!! TGAGAATGAGTATTTTGAAA+AGG + chr6_1:2890192-2890211 None:intergenic 25.0%
!! TTTGGATTTGAAATGAAGAA+AGG + chr6_1:2890303-2890322 None:intergenic 25.0%
! CTTCATTTCAAATCCAAAAA+TGG - chr6_1:2890305-2890324 Msa0869060:exon 25.0%
!!! ACTCTAAAAGAATCCATTTT+TGG + chr6_1:2890321-2890340 None:intergenic 25.0%
! AAACATTATTAGTCATATGG+CGG + chr6_1:2890568-2890587 None:intergenic 25.0%
! GTCAAACATTATTAGTCATA+TGG + chr6_1:2890571-2890590 None:intergenic 25.0%
! ACGAATTAAACCTTAACAAA+GGG + chr6_1:2890637-2890656 None:intergenic 25.0%
! TACGAATTAAACCTTAACAA+AGG + chr6_1:2890638-2890657 None:intergenic 25.0%
!! GTTTGACTTTATTTCATAAC+TGG - chr6_1:2890703-2890722 Msa0869060:CDS 25.0%
! CAGTGAATTAATTAGATTCT+GGG - chr6_1:2890848-2890867 Msa0869060:intron 25.0%
! AGTGAATTAATTAGATTCTG+GGG - chr6_1:2890849-2890868 Msa0869060:intron 25.0%
! AAGGCAATAATTTGGAAAAA+TGG + chr6_1:2891034-2891053 None:intergenic 25.0%
! AAAAAATTGGTCATGGTTAT+CGG - chr6_1:2891088-2891107 Msa0869060:intron 25.0%
! TATGATACACTATGATGATA+AGG - chr6_1:2891206-2891225 Msa0869060:intron 25.0%
! ATAAGGTTTGATTCATTCTA+AGG - chr6_1:2891223-2891242 Msa0869060:intron 25.0%
! TAAGTTAGGATATGGAATAA+TGG - chr6_1:2891252-2891271 Msa0869060:intron 25.0%
!! TGATTAGCTACAATAAGTTT+AGG + chr6_1:2891439-2891458 None:intergenic 25.0%
!!! GTAGCTAATCACTTTTTTAT+TGG - chr6_1:2891448-2891467 Msa0869060:intron 25.0%
! GATTCAAGTCATAAATCAAA+CGG + chr6_1:2891494-2891513 None:intergenic 25.0%
!! GTTAGATTTTACTCATGATT+CGG - chr6_1:2891626-2891645 Msa0869060:intron 25.0%
!!! TAGACTTTTAGAACCTAATA+TGG + chr6_1:2891695-2891714 None:intergenic 25.0%
! ACAAGACATTCACAAATAAT+TGG + chr6_1:2891859-2891878 None:intergenic 25.0%
! AATGTGTCCTTTAATTAGTT+TGG - chr6_1:2892232-2892251 Msa0869060:CDS 25.0%
! CTAACAAAATAGATAATTCG+AGG + chr6_1:2892259-2892278 None:intergenic 25.0%
!!! GGATGTTTTTTGTAATTTGT+TGG - chr6_1:2892352-2892371 Msa0869060:intron 25.0%
!!! TAGCTGACTAATTGTTATTT+TGG + chr6_1:2892521-2892540 None:intergenic 25.0%
! ACCAAATTCAAATGATTACA+TGG - chr6_1:2892595-2892614 Msa0869060:intron 25.0%
! CCAAATTCAAATGATTACAT+GGG - chr6_1:2892596-2892615 Msa0869060:intron 25.0%
! AAATGTCCTTGTTACATATA+TGG - chr6_1:2892643-2892662 Msa0869060:intron 25.0%
!!! TGATGGATATCTAATTGTTT+TGG - chr6_1:2892737-2892756 Msa0869060:intron 25.0%
! ATATCTAATAAGACCTTGTT+TGG - chr6_1:2892921-2892940 Msa0869060:intron 25.0%
! TTAAACAATATAGCCAAACA+AGG + chr6_1:2892937-2892956 None:intergenic 25.0%
! TAGCAGAACTACATATTATT+TGG + chr6_1:2893134-2893153 None:intergenic 25.0%
!!! TGTTTTGAGCAAAAAACTAA+TGG - chr6_1:2893251-2893270 Msa0869060:intron 25.0%
! TATTGAGTAAAGTTTACGTA+GGG + chr6_1:2893575-2893594 None:intergenic 25.0%
! GACAACATATATTTAACCAT+TGG - chr6_1:2893675-2893694 Msa0869060:CDS 25.0%
! ATAGCATATAAAGTTACCAA+TGG + chr6_1:2893694-2893713 None:intergenic 25.0%
!! AATTCCCAATCAATTTTATC+CGG - chr6_1:2894005-2894024 Msa0869060:intron 25.0%
!!! AAATGCTTTTTATATCGATG+TGG - chr6_1:2894164-2894183 Msa0869060:intron 25.0%
!!! GGTCAATTTTTTTTTACACA+TGG - chr6_1:2894286-2894305 Msa0869060:intron 25.0%
!!! AACTGATTTTAAGTTTGTGT+AGG - chr6_1:2894444-2894463 Msa0869060:intron 25.0%
!! CTTCTGTTTTACATGAAATA+TGG + chr6_1:2894485-2894504 None:intergenic 25.0%
! ATTTCTGAGTTTGTCATTAA+AGG - chr6_1:2894645-2894664 Msa0869060:intron 25.0%
!! ACTATTTTCAGATTAGTGTT+AGG - chr6_1:2894697-2894716 Msa0869060:intron 25.0%
! CTAATGATCTGTTTATGTTA+AGG + chr6_1:2894758-2894777 None:intergenic 25.0%
! ATCATTAGAGTATGTAACAT+TGG - chr6_1:2894770-2894789 Msa0869060:intron 25.0%
!! AGTATGTAACATTGGTATTT+TGG - chr6_1:2894778-2894797 Msa0869060:intron 25.0%
! CAAACATTAGCAACTAAATA+TGG + chr6_1:2894837-2894856 None:intergenic 25.0%
!! TTCAAGTACTTGCAAATTTT+TGG - chr6_1:2895100-2895119 Msa0869060:intron 25.0%
! ACAAAAATTGCTACAACTTA+TGG - chr6_1:2895136-2895155 Msa0869060:intron 25.0%
! CAAAAATTGCTACAACTTAT+GGG - chr6_1:2895137-2895156 Msa0869060:intron 25.0%
! GAAGAAATATGGATAGTAAA+TGG + chr6_1:2895164-2895183 None:intergenic 25.0%
! CACAAAAAAGGAAATGAAAA+TGG + chr6_1:2895247-2895266 None:intergenic 25.0%
!!! CATTTTCATTTCCTTTTTTG+TGG - chr6_1:2895245-2895264 Msa0869060:CDS 25.0%
! TTAACTCTTTCAAAAGAGTA+AGG - chr6_1:2895368-2895387 Msa0869060:CDS 25.0%
!!! TTTATTTTTTTTGTTGGGTG+AGG - chr6_1:2895465-2895484 Msa0869060:CDS 25.0%
!!! TTATTTTTTTTGTTGGGTGA+GGG - chr6_1:2895466-2895485 Msa0869060:CDS 25.0%
! ATCATGAAGTAACCTTAAAA+AGG + chr6_1:2895518-2895537 None:intergenic 25.0%
GAAGTGAAAAACACTGAAAA+AGG + chr6_1:2890046-2890065 None:intergenic 30.0%
AGGTTTGATGAGAGAAAATA+AGG + chr6_1:2890090-2890109 None:intergenic 30.0%
!!! GAAATTTTGGTTTGGTTATG+TGG + chr6_1:2890167-2890186 None:intergenic 30.0%
!!! AAAAGGGTGAAATTTTGGTT+TGG + chr6_1:2890175-2890194 None:intergenic 30.0%
TTTGGAAGAAAGAAGAAGAT+GGG + chr6_1:2890263-2890282 None:intergenic 30.0%
! GTGAAGATTTTCTAACAGTT+TGG + chr6_1:2890281-2890300 None:intergenic 30.0%
CTTCAACATTTACAACAAAC+AGG - chr6_1:2890461-2890480 Msa0869060:intron 30.0%
!!! GGTTTTTTAACCCTTTGTTA+AGG - chr6_1:2890624-2890643 Msa0869060:CDS 30.0%
GCAGTGAATTAATTAGATTC+TGG - chr6_1:2890847-2890866 Msa0869060:intron 30.0%
!! AATTAATTAGATTCTGGGGT+GGG - chr6_1:2890853-2890872 Msa0869060:intron 30.0%
! CATTCTCTTTTAACACAAGA+AGG - chr6_1:2890949-2890968 Msa0869060:intron 30.0%
AAATGTAATTAGAGTCGTGT+TGG + chr6_1:2891004-2891023 None:intergenic 30.0%
! CATTAGAGATTTGTTCAGTT+TGG + chr6_1:2891152-2891171 None:intergenic 30.0%
! TTCTAAGGAATCACTAAGTT+AGG - chr6_1:2891238-2891257 Msa0869060:intron 30.0%
GATATGGAATAATGGCTAAT+TGG - chr6_1:2891260-2891279 Msa0869060:intron 30.0%
!! AAGTTGGTATACTAACTAAC+TGG + chr6_1:2891316-2891335 None:intergenic 30.0%
AGTATACCAACTTAGTGATT+TGG - chr6_1:2891323-2891342 Msa0869060:intron 30.0%
ACTAATCCAAATCACTAAGT+TGG + chr6_1:2891332-2891351 None:intergenic 30.0%
GAGCTTCACATATGATATAT+AGG - chr6_1:2891526-2891545 Msa0869060:intron 30.0%
! TTACTCATGATTCGGAAAAT+AGG - chr6_1:2891634-2891653 Msa0869060:intron 30.0%
! CTCGATTTGATAACCATATT+AGG - chr6_1:2891679-2891698 Msa0869060:intron 30.0%
! CATTGGTAATCAATTTGATC+TGG - chr6_1:2891759-2891778 Msa0869060:intron 30.0%
! ACCTGTGATCTACTAATTTT+CGG + chr6_1:2891806-2891825 None:intergenic 30.0%
!! CCAAAATCGATGTTTTTCAA+CGG + chr6_1:2892146-2892165 None:intergenic 30.0%
CTAATTAAAGGACACATTCA+TGG + chr6_1:2892230-2892249 None:intergenic 30.0%
ACTAACAAAAGATACACTCA+TGG - chr6_1:2892331-2892350 Msa0869060:intron 30.0%
CCCATGTAATCATTTGAATT+TGG + chr6_1:2892599-2892618 None:intergenic 30.0%
! GTAACAAGGACATTTTCTTA+GGG + chr6_1:2892638-2892657 None:intergenic 30.0%
! TGTAACAAGGACATTTTCTT+AGG + chr6_1:2892639-2892658 None:intergenic 30.0%
CTGTATAGTAGAAAATGACT+TGG - chr6_1:2892686-2892705 Msa0869060:intron 30.0%
ACATTAGTACTTGTATGCAT+AGG + chr6_1:2892967-2892986 None:intergenic 30.0%
AATAAGCTGAAAACAGTTGA+CGG - chr6_1:2893078-2893097 Msa0869060:intron 30.0%
AAAACTAATGGCTAATGAAG+AGG - chr6_1:2893263-2893282 Msa0869060:intron 30.0%
CAACAGGAAAAATGAAATGA+TGG + chr6_1:2893399-2893418 None:intergenic 30.0%
!! CATCATTTCATTTTTCCTGT+TGG - chr6_1:2893397-2893416 Msa0869060:intron 30.0%
! GGTACCATATGCTATATTTT+CGG - chr6_1:2893418-2893437 Msa0869060:intron 30.0%
CTATTGAGTAAAGTTTACGT+AGG + chr6_1:2893576-2893595 None:intergenic 30.0%
AATTGAGGAAGAGAAAAATG+TGG - chr6_1:2893740-2893759 Msa0869060:intron 30.0%
! TAGCATGTTACTTCCTATAT+AGG - chr6_1:2893771-2893790 Msa0869060:intron 30.0%
! ATTCCCAATCAATTTTATCC+GGG - chr6_1:2894006-2894025 Msa0869060:intron 30.0%
AAACCCGGATAAAATTGATT+GGG + chr6_1:2894012-2894031 None:intergenic 30.0%
AAAACCCGGATAAAATTGAT+TGG + chr6_1:2894013-2894032 None:intergenic 30.0%
CCGGATATAAAAAAAAAACC+CGG + chr6_1:2894027-2894046 None:intergenic 30.0%
!!! CCGGGTTTTTTTTTTATATC+CGG - chr6_1:2894024-2894043 Msa0869060:intron 30.0%
TTTATATCCGGATATGGATT+TGG - chr6_1:2894036-2894055 Msa0869060:intron 30.0%
! TTGTTGATAAATCACGTATC+CGG - chr6_1:2894059-2894078 Msa0869060:intron 30.0%
TGAAATCAAATCCAGTTATG+TGG - chr6_1:2894116-2894135 Msa0869060:intron 30.0%
TTAAAACCAATCCACATAAC+TGG + chr6_1:2894130-2894149 None:intergenic 30.0%
AAGAAACTTCTTGTATGAGA+TGG + chr6_1:2894325-2894344 None:intergenic 30.0%
TCGAATGATGTACTTTATTC+AGG - chr6_1:2894344-2894363 Msa0869060:intron 30.0%
CTCCATGATAAAAGGAAAAT+TGG + chr6_1:2894671-2894690 None:intergenic 30.0%
! CAATTTTCCTTTTATCATGG+AGG - chr6_1:2894669-2894688 Msa0869060:intron 30.0%
GTGACATCAATAATTGATGT+TGG - chr6_1:2894898-2894917 Msa0869060:intron 30.0%
TGCAAGTACTTGAAAATATG+TGG + chr6_1:2895094-2895113 None:intergenic 30.0%
! TTGGAGTTTTCTTGTATTCA+AGG - chr6_1:2895303-2895322 Msa0869060:CDS 30.0%
! TGGAGTTTTCTTGTATTCAA+GGG - chr6_1:2895304-2895323 Msa0869060:CDS 30.0%
AATTATGCTTCCTTTGTCTT+TGG + chr6_1:2895350-2895369 None:intergenic 30.0%
!!! TATTTTTTTTGTTGGGTGAG+GGG - chr6_1:2895467-2895486 Msa0869060:CDS 30.0%
! CTAGAAGTTTGTCCTTTTTA+AGG - chr6_1:2895503-2895522 Msa0869060:CDS 30.0%
GTTACTTCATGATCAAATGT+TGG - chr6_1:2895525-2895544 Msa0869060:CDS 30.0%
CATAGAGATTATGCATGTTG+AGG + chr6_1:2890110-2890129 None:intergenic 35.0%
! TATGTGGTTTGAAAGGTGTA+AGG + chr6_1:2890151-2890170 None:intergenic 35.0%
GTTTGGTTATGTGGTTTGAA+AGG + chr6_1:2890158-2890177 None:intergenic 35.0%
GTTTGGAAGAAAGAAGAAGA+TGG + chr6_1:2890264-2890283 None:intergenic 35.0%
AAGGGAAACAACAAACTTCT+GGG - chr6_1:2890379-2890398 Msa0869060:CDS 35.0%
! TTGGTTTCATGTTTGCTACT+TGG - chr6_1:2890421-2890440 Msa0869060:intron 35.0%
TATTAGTCATATGGCGGTTA+TGG + chr6_1:2890562-2890581 None:intergenic 35.0%
! GAATTAATTAGATTCTGGGG+TGG - chr6_1:2890852-2890871 Msa0869060:intron 35.0%
ACATCGACAAGGCAATAATT+TGG + chr6_1:2891042-2891061 None:intergenic 35.0%
GCATGCAAAAAAATTGGTCA+TGG - chr6_1:2891081-2891100 Msa0869060:intron 35.0%
GGAATCACTAAGTTAGGATA+TGG - chr6_1:2891244-2891263 Msa0869060:intron 35.0%
ACAGTTACAACATTCCAGTT+CGG - chr6_1:2891728-2891747 Msa0869060:intron 35.0%
! GATCTACTAATTTTCGGTCT+GGG + chr6_1:2891800-2891819 None:intergenic 35.0%
! TGATCTACTAATTTTCGGTC+TGG + chr6_1:2891801-2891820 None:intergenic 35.0%
ACCGAAAATTAGTAGATCAC+AGG - chr6_1:2891802-2891821 Msa0869060:intron 35.0%
!! CTTTTGACGAACATTAGTCT+TGG - chr6_1:2891991-2892010 Msa0869060:intron 35.0%
GAAAGGTTCCATAGATTTGA+TGG + chr6_1:2892043-2892062 None:intergenic 35.0%
GAAAGAACAACAGTGAAGAA+AGG + chr6_1:2892060-2892079 None:intergenic 35.0%
! TGTTCTTTCATCCCTTCTTT+TGG - chr6_1:2892071-2892090 Msa0869060:intron 35.0%
! GTTCTTTCATCCCTTCTTTT+GGG - chr6_1:2892072-2892091 Msa0869060:intron 35.0%
!!! CCGTTGAAAAACATCGATTT+TGG - chr6_1:2892143-2892162 Msa0869060:intron 35.0%
TCGAGGACCAAACTAATTAA+AGG + chr6_1:2892242-2892261 None:intergenic 35.0%
!! TAATTTGTTGGTTTCCCTAG+TGG - chr6_1:2892364-2892383 Msa0869060:intron 35.0%
TCAAACCAATCAATCCACTA+GGG + chr6_1:2892381-2892400 None:intergenic 35.0%
ATCAAACCAATCAATCCACT+AGG + chr6_1:2892382-2892401 None:intergenic 35.0%
!!! GGTTTTAAACCAAGAAGGAA+AGG + chr6_1:2892419-2892438 None:intergenic 35.0%
!!! TTTTGGTTCCTAAATGTACG+AGG + chr6_1:2892504-2892523 None:intergenic 35.0%
! CACGCAGTTTAGTAATTTGT+AGG - chr6_1:2892545-2892564 Msa0869060:intron 35.0%
TAGGACTGAAAATCGAGTAA+AGG - chr6_1:2892564-2892583 Msa0869060:intron 35.0%
ATGACGCCATATATGTAACA+AGG + chr6_1:2892652-2892671 None:intergenic 35.0%
AAGTAGGCATCTGTTCATTT+AGG + chr6_1:2892786-2892805 None:intergenic 35.0%
ATGAACAGATGCCTACTTTA+TGG - chr6_1:2892788-2892807 Msa0869060:intron 35.0%
TGAACAGATGCCTACTTTAT+GGG - chr6_1:2892789-2892808 Msa0869060:intron 35.0%
TCTTCTCTTCTACCTATAGT+TGG - chr6_1:2892817-2892836 Msa0869060:CDS 35.0%
CTTCTCTTCTACCTATAGTT+GGG - chr6_1:2892818-2892837 Msa0869060:CDS 35.0%
TTCTCTTCTACCTATAGTTG+GGG - chr6_1:2892819-2892838 Msa0869060:CDS 35.0%
TGACTGAAGTCTCTTTCAAT+TGG - chr6_1:2892860-2892879 Msa0869060:CDS 35.0%
CTAAAGCAAGAATAACTTCG+TGG - chr6_1:2892895-2892914 Msa0869060:intron 35.0%
!! TGCTACTGTGAGATTGATTT+TGG - chr6_1:2893149-2893168 Msa0869060:intron 35.0%
ATATAGCATATGGTACCAAC+AGG + chr6_1:2893415-2893434 None:intergenic 35.0%
! ACCATATGCTATATTTTCGG+AGG - chr6_1:2893421-2893440 Msa0869060:intron 35.0%
! CCATATGCTATATTTTCGGA+GGG - chr6_1:2893422-2893441 Msa0869060:intron 35.0%
ATGCAAGGACTAAGCATAAA+AGG - chr6_1:2893638-2893657 Msa0869060:CDS 35.0%
! GCTATGTATAAGATCCGTTT+TGG - chr6_1:2893819-2893838 Msa0869060:intron 35.0%
! GAATGAGCAACTAAGCTTTT+AGG + chr6_1:2893982-2894001 None:intergenic 35.0%
TCAACAACCAAATCCATATC+CGG + chr6_1:2894046-2894065 None:intergenic 35.0%
!! CCATAGTTGCTCATTTTAAC+CGG + chr6_1:2894081-2894100 None:intergenic 35.0%
! TGGATTTGATTTCACAACAC+CGG + chr6_1:2894110-2894129 None:intergenic 35.0%
TCAAATCCAGTTATGTGGAT+TGG - chr6_1:2894121-2894140 Msa0869060:intron 35.0%
! CACATGTGCAATGAAGATTT+TGG - chr6_1:2894228-2894247 Msa0869060:intron 35.0%
!! GATTGTGCGTTGATTAAACA+CGG - chr6_1:2894618-2894637 Msa0869060:intron 35.0%
!! ATTGTGCGTTGATTAAACAC+GGG - chr6_1:2894619-2894638 Msa0869060:intron 35.0%
! GGCCAATTTTCCTTTTATCA+TGG - chr6_1:2894666-2894685 Msa0869060:intron 35.0%
! TTTCCTTTTATCATGGAGGT+CGG - chr6_1:2894673-2894692 Msa0869060:intron 35.0%
ATGTTGGAGCTTAATGCATT+TGG - chr6_1:2894914-2894933 Msa0869060:intron 35.0%
CCAAATTAGGACCACAAAAA+AGG + chr6_1:2895259-2895278 None:intergenic 35.0%
!!! CCTTTTTTGTGGTCCTAATT+TGG - chr6_1:2895256-2895275 Msa0869060:CDS 35.0%
AGGTGTAAGGTTGAAGAAGA+AGG + chr6_1:2890138-2890157 None:intergenic 40.0%
TGGGCATGAAAATCCATCAA+TGG + chr6_1:2890244-2890263 None:intergenic 40.0%
GAAGGGAAACAACAAACTTC+TGG - chr6_1:2890378-2890397 Msa0869060:CDS 40.0%
!!! CCAATTTTTTTGCATGCCAC+CGG + chr6_1:2891078-2891097 None:intergenic 40.0%
GTTGTAACTGTTGCTGGAAA+TGG + chr6_1:2891719-2891738 None:intergenic 40.0%
TGGAATGTTGTAACTGTTGC+TGG + chr6_1:2891725-2891744 None:intergenic 40.0%
CACTCACACCATCAAATCTA+TGG - chr6_1:2892032-2892051 Msa0869060:intron 40.0%
CATTACCTCACCCAAAAGAA+GGG + chr6_1:2892085-2892104 None:intergenic 40.0%
ACATTACCTCACCCAAAAGA+AGG + chr6_1:2892086-2892105 None:intergenic 40.0%
!! CGATGTTTTTCAACGGATAC+AGG + chr6_1:2892139-2892158 None:intergenic 40.0%
TTGTTAGATAGTTTGGTCCC+TGG - chr6_1:2892272-2892291 Msa0869060:CDS 40.0%
ATGAACGGAAAACACATCCA+GGG + chr6_1:2892292-2892311 None:intergenic 40.0%
! GTGTTTTCCGTTCATCAGTT+TGG - chr6_1:2892297-2892316 Msa0869060:CDS 40.0%
CAATCTACACCTTTCCTTCT+TGG - chr6_1:2892407-2892426 Msa0869060:CDS 40.0%
!!! CTGCTGGTTTTAAACCAAGA+AGG + chr6_1:2892424-2892443 None:intergenic 40.0%
GCTCATAAATGAGCAAGTGA+TGG - chr6_1:2892720-2892739 Msa0869060:intron 40.0%
GAAGAAACCACCCATAAAGT+AGG + chr6_1:2892802-2892821 None:intergenic 40.0%
TCTCTTCTACCTATAGTTGG+GGG - chr6_1:2892820-2892839 Msa0869060:CDS 40.0%
ACATGTTCTCGTCTCAAAAC+AGG - chr6_1:2893178-2893197 Msa0869060:intron 40.0%
TTCTCGTCTCAAAACAGGAT+TGG - chr6_1:2893183-2893202 Msa0869060:intron 40.0%
! ACTTGAAGCATGTTTCTGAC+AGG - chr6_1:2893337-2893356 Msa0869060:intron 40.0%
! ATGTTTCTGACAGGAAGCTT+TGG - chr6_1:2893346-2893365 Msa0869060:intron 40.0%
CCCTCCGAAAATATAGCATA+TGG + chr6_1:2893425-2893444 None:intergenic 40.0%
AATTACATACCGCAGATTGC+AGG + chr6_1:2893469-2893488 None:intergenic 40.0%
!!! AGTCCTTGTTTTGCTTTCGT+GGG + chr6_1:2893601-2893620 None:intergenic 40.0%
!!! TAGTCCTTGTTTTGCTTTCG+TGG + chr6_1:2893602-2893621 None:intergenic 40.0%
!! AATCCTTGGCTTGCCTATAT+AGG + chr6_1:2893787-2893806 None:intergenic 40.0%
CCGGTTAAAATGAGCAACTA+TGG - chr6_1:2894078-2894097 Msa0869060:intron 40.0%
TGAGCAACTATGGACATAAC+CGG - chr6_1:2894088-2894107 Msa0869060:intron 40.0%
AAGTAGGGTTGCTTATGGAT+AGG + chr6_1:2894206-2894225 None:intergenic 40.0%
CATTGCACATGTGACAAGTA+GGG + chr6_1:2894221-2894240 None:intergenic 40.0%
TCATTGCACATGTGACAAGT+AGG + chr6_1:2894222-2894241 None:intergenic 40.0%
TTGGAGCTTAATGCATTTGG+TGG - chr6_1:2894917-2894936 Msa0869060:intron 40.0%
! ATTTGGTGGCAGGTTTCATA+TGG - chr6_1:2894931-2894950 Msa0869060:intron 40.0%
! TTTGGTGGCAGGTTTCATAT+GGG - chr6_1:2894932-2894951 Msa0869060:intron 40.0%
CCATTAGAGAGACTTACCAA+GGG + chr6_1:2895070-2895089 None:intergenic 40.0%
ACCATTAGAGAGACTTACCA+AGG + chr6_1:2895071-2895090 None:intergenic 40.0%
TCTTGTATTCAAGGGCAAAG+AGG - chr6_1:2895312-2895331 Msa0869060:CDS 40.0%
AAAGAGAGAGAGATAGAGAG+AGG - chr6_1:2895392-2895411 Msa0869060:CDS 40.0%
AAGAGAGAGAGATAGAGAGA+GGG - chr6_1:2895393-2895412 Msa0869060:CDS 40.0%
CCATCAATGGTGAGTCTAAG+TGG + chr6_1:2890231-2890250 None:intergenic 45.0%
CCACTTAGACTCACCATTGA+TGG - chr6_1:2890228-2890247 Msa0869060:three_prime_UTR 45.0%
CTTGTTCAGTCTCTTCAGCT+TGG - chr6_1:2890402-2890421 Msa0869060:intron 45.0%
!! TAATTAGATTCTGGGGTGGG+AGG - chr6_1:2890856-2890875 Msa0869060:intron 45.0%
!! AATTAGATTCTGGGGTGGGA+GGG - chr6_1:2890857-2890876 Msa0869060:intron 45.0%
ACGACACTGAAACATCGACA+AGG + chr6_1:2891053-2891072 None:intergenic 45.0%
CCGGTGGCATGCAAAAAAAT+TGG - chr6_1:2891075-2891094 Msa0869060:intron 45.0%
CTCGACACTGCTAACATGTA+TGG + chr6_1:2891121-2891140 None:intergenic 45.0%
ATTCCCCAATGTATGAGCCA+CGG + chr6_1:2891971-2891990 None:intergenic 45.0%
!! GACGAACATTAGTCTTGGCA+AGG - chr6_1:2891996-2892015 Msa0869060:intron 45.0%
!! TTCATCCCTTCTTTTGGGTG+AGG - chr6_1:2892077-2892096 Msa0869060:intron 45.0%
GATGAACGGAAAACACATCC+AGG + chr6_1:2892293-2892312 None:intergenic 45.0%
! TGACGGACCAAACTGATGAA+CGG + chr6_1:2892307-2892326 None:intergenic 45.0%
!! GGTTTCCCTAGTGGATTGAT+TGG - chr6_1:2892373-2892392 Msa0869060:intron 45.0%
AAACCAGCAGAGACAAACAG+AGG - chr6_1:2892434-2892453 Msa0869060:CDS 45.0%
AACCAGCAGAGACAAACAGA+GGG - chr6_1:2892435-2892454 Msa0869060:CDS 45.0%
TGGTTCCTAAATGTACGAGG+CGG + chr6_1:2892501-2892520 None:intergenic 45.0%
TGGCGTCATTCGATACATGT+AGG - chr6_1:2892663-2892682 Msa0869060:intron 45.0%
ACAGATGCCTACTTTATGGG+TGG - chr6_1:2892792-2892811 Msa0869060:intron 45.0%
GATTGGATTCAGCACTGCAA+TGG - chr6_1:2893200-2893219 Msa0869060:intron 45.0%
CCAACCTTACGAATCAATCG+CGG - chr6_1:2893226-2893245 Msa0869060:intron 45.0%
!! CATTCCGCGATTGATTCGTA+AGG + chr6_1:2893233-2893252 None:intergenic 45.0%
!!! GTCCTTGTTTTGCTTTCGTG+GGG + chr6_1:2893600-2893619 None:intergenic 45.0%
CTTCCTATATAGGCAAGCCA+AGG - chr6_1:2893781-2893800 Msa0869060:intron 45.0%
GCTCTCGAACATTCAATCCT+TGG + chr6_1:2893801-2893820 None:intergenic 45.0%
GAAGCAGAATGCAGCCAAAA+CGG + chr6_1:2893836-2893855 None:intergenic 45.0%
ATGTGAAAAACCTCACCTGC+TGG + chr6_1:2893867-2893886 None:intergenic 45.0%
GTGACAAGTAGGGTTGCTTA+TGG + chr6_1:2894211-2894230 None:intergenic 45.0%
! AGCTTAATGCATTTGGTGGC+AGG - chr6_1:2894921-2894940 Msa0869060:intron 45.0%
CCCTTGGTAAGTCTCTCTAA+TGG - chr6_1:2895067-2895086 Msa0869060:intron 45.0%
TGTGGTCCTAATTTGGTTGC+AGG - chr6_1:2895263-2895282 Msa0869060:CDS 45.0%
GCAGTTCCTGCAACCAAATT+AGG + chr6_1:2895272-2895291 None:intergenic 45.0%
GGAACTGCTATTGCACTTGT+TGG - chr6_1:2895284-2895303 Msa0869060:CDS 45.0%
TAAGCCAGTGCCAAAGACAA+AGG - chr6_1:2895337-2895356 Msa0869060:CDS 45.0%
!!! TTTTTTGTTGGGTGAGGGGT+TGG - chr6_1:2895471-2895490 Msa0869060:CDS 45.0%
!!! TTTAAATAAATAGTATATTT+TGG - chr6_1:2894532-2894551 Msa0869060:intron 5.0%
!!! TTTATTTTTATTTTTTTTGT+TGG - chr6_1:2895459-2895478 Msa0869060:CDS 5.0%
!!! TTATTTTTATTTTTTTTGTT+GGG - chr6_1:2895460-2895479 Msa0869060:CDS 5.0%
! TGCTGCTTCTTCTGTTCCTG+AGG - chr6_1:2890344-2890363 Msa0869060:CDS 50.0%
CTGAGGCACAGAGTGATGAA+GGG - chr6_1:2890361-2890380 Msa0869060:CDS 50.0%
!! ATTAGATTCTGGGGTGGGAG+GGG - chr6_1:2890858-2890877 Msa0869060:intron 50.0%
CGATGTTTCAGTGTCGTGTC+CGG - chr6_1:2891056-2891075 Msa0869060:intron 50.0%
CCAATGAAGCAAAGCCGAAC+TGG + chr6_1:2891745-2891764 None:intergenic 50.0%
CCAGTTCGGCTTTGCTTCAT+TGG - chr6_1:2891742-2891761 Msa0869060:intron 50.0%
AATGTATGAGCCACGGCAAG+TGG + chr6_1:2891964-2891983 None:intergenic 50.0%
ACTTGCCGTGGCTCATACAT+TGG - chr6_1:2891963-2891982 Msa0869060:intron 50.0%
CTTGCCGTGGCTCATACATT+GGG - chr6_1:2891964-2891983 Msa0869060:intron 50.0%
TTGCCGTGGCTCATACATTG+GGG - chr6_1:2891965-2891984 Msa0869060:intron 50.0%
TTCCCTCTGTTTGTCTCTGC+TGG + chr6_1:2892440-2892459 None:intergenic 50.0%
TGACACCGCCTCGTACATTT+AGG - chr6_1:2892493-2892512 Msa0869060:intron 50.0%
TCTACCTATAGTTGGGGGAG+TGG - chr6_1:2892825-2892844 Msa0869060:CDS 50.0%
AATGCCACTCCCCCAACTAT+AGG + chr6_1:2892832-2892851 None:intergenic 50.0%
TATAGTTGGGGGAGTGGCAT+TGG - chr6_1:2892831-2892850 Msa0869060:CDS 50.0%
!! CCGCGATTGATTCGTAAGGT+TGG + chr6_1:2893229-2893248 None:intergenic 50.0%
TCCTTCGTACCTGCAATCTG+CGG - chr6_1:2893457-2893476 Msa0869060:intron 50.0%
GTCCCCACGAAAGCAAAACA+AGG - chr6_1:2893595-2893614 Msa0869060:CDS 50.0%
! GTGCCGACCTCCATGATAAA+AGG + chr6_1:2894679-2894698 None:intergenic 50.0%
TCACCTGTGACACACTCAGT+CGG - chr6_1:2894970-2894989 Msa0869060:intron 50.0%
TTTCCGACTGAGTGTGTCAC+AGG + chr6_1:2894976-2894995 None:intergenic 50.0%
TGACAGGTGAGACAGGAGTT+TGG + chr6_1:2895044-2895063 None:intergenic 50.0%
!! GACTTACCAAGGGCATTGAC+AGG + chr6_1:2895060-2895079 None:intergenic 50.0%
GCTTCCTTTGTCTTTGGCAC+TGG + chr6_1:2895344-2895363 None:intergenic 50.0%
CCTTCATCACTCTGTGCCTC+AGG + chr6_1:2890363-2890382 None:intergenic 55.0%
CCTGAGGCACAGAGTGATGA+AGG - chr6_1:2890360-2890379 Msa0869060:CDS 55.0%
TGTTTCAGTGTCGTGTCCGG+TGG - chr6_1:2891059-2891078 Msa0869060:intron 55.0%
AGCAATCCTTCCACTTGCCG+TGG - chr6_1:2891951-2891970 Msa0869060:intron 55.0%
TATGAGCCACGGCAAGTGGA+AGG + chr6_1:2891960-2891979 None:intergenic 55.0%
ACCGCAGATTGCAGGTACGA+AGG + chr6_1:2893461-2893480 None:intergenic 55.0%
CTGCTTCCATGCATACCAGC+AGG - chr6_1:2893849-2893868 Msa0869060:intron 55.0%
TCCATGCATACCAGCAGGTG+AGG - chr6_1:2893854-2893873 Msa0869060:intron 55.0%
ACCTCACCTGCTGGTATGCA+TGG + chr6_1:2893858-2893877 None:intergenic 55.0%
!! AGGGCATTGACAGGTGAGAC+AGG + chr6_1:2895051-2895070 None:intergenic 55.0%
GTCTCACCTGTCAATGCCCT+TGG - chr6_1:2895051-2895070 Msa0869060:intron 55.0%
!! TTCTGGGGTGGGAGGGGAAA+AGG - chr6_1:2890864-2890883 Msa0869060:intron 60.0%
! TCTGGGGTGGGAGGGGAAAA+GGG - chr6_1:2890865-2890884 Msa0869060:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 2890031 2895658 2890031 ID=Msa0869060;Name=Msa0869060
chr6_1 mRNA 2890031 2895658 2890031 ID=Msa0869060-mRNA-1;Parent=Msa0869060;Name=Msa0869060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=35|1|1|1|1|1|9|291|424
chr6_1 exon 2890031 2890404 2890031 ID=Msa0869060-mRNA-1:exon:942;Parent=Msa0869060-mRNA-1
chr6_1 exon 2890617 2890746 2890617 ID=Msa0869060-mRNA-1:exon:941;Parent=Msa0869060-mRNA-1
chr6_1 exon 2891819 2891896 2891819 ID=Msa0869060-mRNA-1:exon:940;Parent=Msa0869060-mRNA-1
chr6_1 exon 2892211 2892330 2892211 ID=Msa0869060-mRNA-1:exon:939;Parent=Msa0869060-mRNA-1
chr6_1 exon 2892405 2892489 2892405 ID=Msa0869060-mRNA-1:exon:938;Parent=Msa0869060-mRNA-1
chr6_1 exon 2892808 2892893 2892808 ID=Msa0869060-mRNA-1:exon:937;Parent=Msa0869060-mRNA-1
chr6_1 exon 2893591 2893743 2893591 ID=Msa0869060-mRNA-1:exon:936;Parent=Msa0869060-mRNA-1
chr6_1 exon 2893866 2893988 2893866 ID=Msa0869060-mRNA-1:exon:935;Parent=Msa0869060-mRNA-1
chr6_1 exon 2895207 2895658 2895207 ID=Msa0869060-mRNA-1:exon:934;Parent=Msa0869060-mRNA-1
chr6_1 five_prime_UTR 2895624 2895658 2895624 ID=Msa0869060-mRNA-1:five_prime_utr;Parent=Msa0869060-mRNA-1
chr6_1 CDS 2895207 2895623 2895207 ID=Msa0869060-mRNA-1:cds;Parent=Msa0869060-mRNA-1
chr6_1 CDS 2893866 2893988 2893866 ID=Msa0869060-mRNA-1:cds;Parent=Msa0869060-mRNA-1
chr6_1 CDS 2893591 2893743 2893591 ID=Msa0869060-mRNA-1:cds;Parent=Msa0869060-mRNA-1
chr6_1 CDS 2892808 2892893 2892808 ID=Msa0869060-mRNA-1:cds;Parent=Msa0869060-mRNA-1
chr6_1 CDS 2892405 2892489 2892405 ID=Msa0869060-mRNA-1:cds;Parent=Msa0869060-mRNA-1
chr6_1 CDS 2892211 2892330 2892211 ID=Msa0869060-mRNA-1:cds;Parent=Msa0869060-mRNA-1
chr6_1 CDS 2891819 2891896 2891819 ID=Msa0869060-mRNA-1:cds;Parent=Msa0869060-mRNA-1
chr6_1 CDS 2890617 2890746 2890617 ID=Msa0869060-mRNA-1:cds;Parent=Msa0869060-mRNA-1
chr6_1 CDS 2890322 2890404 2890322 ID=Msa0869060-mRNA-1:cds;Parent=Msa0869060-mRNA-1
chr6_1 three_prime_UTR 2890031 2890321 2890031 ID=Msa0869060-mRNA-1:three_prime_utr;Parent=Msa0869060-mRNA-1
Gene Sequence

>Msa0869060

ATGCAACAAACAACTATGTCTCCTTATTTTCTCTCATCAAACCTCAACATGCATAATCTCTATGTCTCACCTTCTTCTTCAACCTTACACCTTTCAAACCACATAACCAAACCAAAATTTCACCCTTTTCAAAATACTCATTCTCACAATTTTTCTTCTTCACCACTTAGACTCACCATTGATGGATTTTCATGCCCATCTTCTTCTTTCTTCCAAACTGTTAGAAAATCTTCACCTTTCTTCATTTCAAATCCAAAAATGGATTCTTTTAGAGTCTTTGCTGCTTCTTCTGTTCCTGAGGCACAGAGTGATGAAGGGAAACAACAAACTTCTGGGCTTGTTCAGTCTCTTCAGCTTGGTTTCATGTTTGCTACTTGGTATCTCTTGAATATTTACTTCAACATTTACAACAAACAGGTTCTAAAAGTCTATCCATTTCCAGCAACAGTTACAACATTCCAGTTCGGCTTTGCTTCATTGGTAATCAATTTGATCTGGACTTTGAATCTTCATCCCAGACCGAAAATTAGTAGATCACAGCTCACAGCAATCCTTCCACTTGCCGTGGCTCATACATTGGGGAATCTTTTGACGAACATTAGTCTTGGCAAGGTCGCTGTTTCTTTCACTCACACCATCAAATCTATGGAACCTTTCTTCACTGTTGTTCTTTCATCCCTTCTTTTGGGTGAGATGCCTACTTTATGGGTGGTTTCTTCTCTTCTACCTATAGTTGGGGGAGTGGCATTGGCATCGATGACTGAAGTCTCTTTCAATTGGATTGGATTCAGCACTGCAATGGCATCCAACCTTACGAATCAATCGCGGAATGTTTTGAGCAAAAAACTAATGGCTAATGAAGAGGAAGCTTTGGACAATATCAATCTCTACTCAGTTATAACCATCATTTCATTTTTCCTGTTGGTACCATATGCTATATTTTCGGAGGGTGTCAAGTTTACTCCTTCGTACCTGCAATCTGCGGCAAGCCAAGGATTGAATGTTCGAGAGCTATGTATAAGATCCGTTTTGGCTGCATTCTGCTTCCATGCATACCAGCAGGTTTCATATGGGATATTAGAGAAAGTGTCACCTGTGACACACTCAGTCGGAAATTGCGTTAAGCGTGTCGTTGTCATCGTCTCTTCAGTTATCTTTTTCCAAACTCCTGTCTCACCTGTCAATGCCCTTGGAACTGCTATTGCACTTGTTGGAGTTTTCTTGTATTCAAGGGCAAAGAGGATTAAGCCAGTGCCAAAGACAAAGGAAGCATAA

Protein sequence

>Msa0869060

MQQTTMSPYFLSSNLNMHNLYVSPSSSTLHLSNHITKPKFHPFQNTHSHNFSSSPLRLTIDGFSCPSSSFFQTVRKSSPFFISNPKMDSFRVFAASSVPEAQSDEGKQQTSGLVQSLQLGFMFATWYLLNIYFNIYNKQVLKVYPFPATVTTFQFGFASLVINLIWTLNLHPRPKISRSQLTAILPLAVAHTLGNLLTNISLGKVAVSFTHTIKSMEPFFTVVLSSLLLGEMPTLWVVSSLLPIVGGVALASMTEVSFNWIGFSTAMASNLTNQSRNVLSKKLMANEEEALDNINLYSVITIISFFLLVPYAIFSEGVKFTPSYLQSAASQGLNVRELCIRSVLAAFCFHAYQQVSYGILEKVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPVNALGTAIALVGVFLYSRAKRIKPVPKTKEA*