AlfalfaGEDB | Msa0554770

M. sativa cultivar zhongmu-4 / Msa0554770

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010380 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051193 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090056 GO:0140110 GO:1900055 GO:1900056 GO:1901401 GO:1901463 GO:1902680 GO:1903506 GO:1903508 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554770	XP_003607509.2	88.559	236	23	2	1	235	192	424	5.92e-132	389

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554770	sp\|Q9SIV3\|GLK1_ARATH	49.012	253	90	12	1	234	187	419	1.76e-42	151

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554770	G7JTX7	88.559	236	23	2	1	235	192	424	2.83e-132	389

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TFs/TRs:

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Gene ID	Type	Classification
Msa0554770	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0554770	0.844911	5.638166e-59	-8.615850e-47
Msa0000800	Msa0554770	-0.842064	3.248089e-58	-8.615850e-47
Msa0001510	Msa0554770	0.815291	9.965522e-52	-8.615850e-47
Msa0002110	Msa0554770	0.880524	5.113872e-70	-8.615850e-47
Msa0002690	Msa0554770	0.890444	9.794612e-74	-8.615850e-47
Msa0002700	Msa0554770	0.894895	1.602872e-75	-8.615850e-47
Msa0003340	Msa0554770	0.833098	6.483176e-56	-8.615850e-47
Msa0004180	Msa0554770	0.890911	6.418279e-74	-8.615850e-47
Msa0004940	Msa0554770	-0.819670	1.028175e-52	-8.615850e-47
Msa0004990	Msa0554770	-0.807017	6.206683e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554770	MtrunA17_Chr4g0040481	88.559	236	23	2	1	235	192	424	5.45e-136	389
Msa0554770	MtrunA17_Chr2g0324891	61.728	243	67	10	1	232	195	422	7.34e-82	251
Msa0554770	MtrunA17_Chr4g0054981	32.083	240	120	10	1	232	344	548	1.24e-21	93.2
Msa0554770	MtrunA17_Chr5g0400241	29.870	231	113	8	1	226	345	531	4.20e-18	82.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554770	AT2G20570.1	49.012	253	90	12	1	234	187	419	1.79e-43	151
Msa0554770	AT2G20570.2	49.012	253	90	12	1	234	203	435	1.93e-43	152
Msa0554770	AT5G44190.1	45.833	240	85	7	1	231	181	384	1.59e-36	132
Msa0554770	AT2G20570.3	46.862	239	88	12	15	234	154	372	6.22e-33	122
Msa0554770	AT5G44190.2	60.227	88	32	1	1	88	181	265	1.21e-25	103
Msa0554770	AT4G18020.3	32.016	253	97	9	1	234	330	526	2.19e-11	63.5
Msa0554770	AT4G18020.2	32.016	253	97	9	1	234	330	526	2.19e-11	63.5
Msa0554770	AT4G18020.1	32.016	253	97	9	1	234	330	526	2.19e-11	63.5
Msa0554770	AT4G18020.6	32.016	253	97	9	1	234	330	526	2.19e-11	63.5
Msa0554770	AT4G18020.9	32.016	253	97	9	1	234	330	526	2.19e-11	63.5

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Find 112 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAATTAATCCTTTAC+CGG	0.340492	4_1:+52469132	Msa0554770:three_prime_UTR
AAACCCATGGTGGGTGCAGC+TGG	0.319978	4_1:-52466574	None:intergenic
AAACTAATTAATCCTTTACC+GGG	0.572727	4_1:+52469133	Msa0554770:three_prime_UTR
AAAGACTGGTCCATATTTGA+AGG	0.536097	4_1:-52466667	None:intergenic
AACATGCAGAGACCATCATT+TGG	0.489976	4_1:+52468574	Msa0554770:intron
AACTAATTAATCCTTTACCG+GGG	0.665216	4_1:+52469134	Msa0554770:three_prime_UTR
AAGCAGCAAGTTGGAATCAA+AGG	0.471928	4_1:+52466500	Msa0554770:CDS
AAGGGTCTAAAATGGTGCAA+TGG	0.690674	4_1:-52466628	None:intergenic
AAGTGCACGAGACACTCATC+AGG	0.570002	4_1:+52466054	Msa0554770:five_prime_UTR
AATCAAAGGAGACAAGTATA+TGG	0.464153	4_1:+52466514	Msa0554770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTAGTGTGTTTATTGTGC+AGG	+	chr4_1:52466090-52466109	Msa0554770:five_prime_UTR	30.0%
ATAATCTCCAAAATCCTTGA+AGG	-	chr4_1:52466187-52466206	None:intergenic	30.0%
TGAAATTCATATGTACCTGA+AGG	-	chr4_1:52466249-52466268	None:intergenic	30.0%
TTCAAGCATATAGGAGAAAA+AGG	+	chr4_1:52466265-52466284	Msa0554770:intron	30.0%
AATCAAAGGAGACAAGTATA+TGG	+	chr4_1:52466514-52466533	Msa0554770:CDS	30.0%
ATACATGTAAGGGTCTAAAA+TGG	-	chr4_1:52466639-52466658	None:intergenic	30.0%
AAATTAGAGAAAGACTTTCG+TGG	-	chr4_1:52467380-52467399	None:intergenic	30.0%
AGGATTCAATTATATGTGGT+TGG	-	chr4_1:52467969-52467988	None:intergenic	30.0%
ATGTTGAATGCATGTATGTA+TGG	-	chr4_1:52468714-52468733	None:intergenic	30.0%
TAAAAGCTCCATAGATTTCA+AGG	+	chr4_1:52468892-52468911	Msa0554770:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	52465993	52469369	52465993	ID=Msa0554770;Name=Msa0554770
chr4_1	mRNA	52465993	52469369	52465993	ID=Msa0554770-mRNA-1;Parent=Msa0554770;Name=Msa0554770-mRNA-1;_AED=0.04;_eAED=0.04;_QI=212\|1\|1\|1\|1\|1\|5\|240\|235
chr4_1	exon	52465993	52466252	52465993	ID=Msa0554770-mRNA-1:exon:15085;Parent=Msa0554770-mRNA-1
chr4_1	exon	52466457	52466789	52466457	ID=Msa0554770-mRNA-1:exon:15086;Parent=Msa0554770-mRNA-1
chr4_1	exon	52468271	52468333	52468271	ID=Msa0554770-mRNA-1:exon:15087;Parent=Msa0554770-mRNA-1
chr4_1	exon	52468583	52468693	52468583	ID=Msa0554770-mRNA-1:exon:15088;Parent=Msa0554770-mRNA-1
chr4_1	exon	52468977	52469369	52468977	ID=Msa0554770-mRNA-1:exon:15089;Parent=Msa0554770-mRNA-1
chr4_1	five_prime_UTR	52465993	52466204	52465993	ID=Msa0554770-mRNA-1:five_prime_utr;Parent=Msa0554770-mRNA-1
chr4_1	CDS	52466205	52466252	52466205	ID=Msa0554770-mRNA-1:cds;Parent=Msa0554770-mRNA-1
chr4_1	CDS	52466457	52466789	52466457	ID=Msa0554770-mRNA-1:cds;Parent=Msa0554770-mRNA-1
chr4_1	CDS	52468271	52468333	52468271	ID=Msa0554770-mRNA-1:cds;Parent=Msa0554770-mRNA-1
chr4_1	CDS	52468583	52468693	52468583	ID=Msa0554770-mRNA-1:cds;Parent=Msa0554770-mRNA-1
chr4_1	CDS	52468977	52469129	52468977	ID=Msa0554770-mRNA-1:cds;Parent=Msa0554770-mRNA-1
chr4_1	three_prime_UTR	52469130	52469369	52469130	ID=Msa0554770-mRNA-1:three_prime_utr;Parent=Msa0554770-mRNA-1

Gene Sequence

>Msa0554770

ATGGGAATTGATTGTCTCACTCGCCATAACATTGCTAGTCACCTTCAGAAATATAGGTCACATAGAAAACATTTGCTAGCGCGTGAAGCAGAAGCAGCAAGTTGGAATCAAAGGAGACAAGTATATGGTGGTGTAGGGGTGAAGAGAGAAGTGATCAGTCCATGGCCAGCTGCACCCACCATGGGTTTCCCCCCTCATCCTCCTCCTCCTCATATGGCACCATTGCACCATTTTAGACCCTTACATGTATGGGGACATCCTTCAAATATGGACCAGTCTTTTCTGCACATGTGGCCTACACCGCAGCCACTCTCATGGACACCATCGGTAGCTCCTCCACCACCTCAAGATCCTTCATTTTGGCATTCTCACCACCAGCAGACTCCAATAAACGCAATGATCCGGCCAGGAACACATTGTTTCCCACCACCTCTGACAACAGTGAGACCATCATTTGGATGTCCAATCCCCGGCATCCCACCCCATGGCATGTGTAAAGCAGATCACGGCATTAGCACCCTTCCTGCTCCCGGTCACTTCTTCGACTTCCCACCGTCAAATGAGAGCATAGACGCAGCTATTGGAGATGTTTTATCAAAACCATGGTTGCCACTACCACTTGGACTCAAAGCTCCAGCACTTGATAGCGTAATGGGTGAACTACAAAGACAAGGAATTTCAAACATTCCACCCTCATCATGCACTTGA

Protein sequence

>Msa0554770

MGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWNQRRQVYGGVGVKREVISPWPAAPTMGFPPHPPPPHMAPLHHFRPLHVWGHPSNMDQSFLHMWPTPQPLSWTPSVAPPPPQDPSFWHSHHQQTPINAMIRPGTHCFPPPLTTVRPSFGCPIPGIPPHGMCKADHGISTLPAPGHFFDFPPSNESIDAAIGDVLSKPWLPLPLGLKAPALDSVMGELQRQGISNIPPSSCT*