AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0554770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554770 MtrunA17_Chr4g0040481 88.559 236 23 2 1 235 192 424 5.45e-136 389
Msa0554770 MtrunA17_Chr2g0324891 61.728 243 67 10 1 232 195 422 7.34e-82 251
Msa0554770 MtrunA17_Chr4g0054981 32.083 240 120 10 1 232 344 548 1.24e-21 93.2
Msa0554770 MtrunA17_Chr5g0400241 29.870 231 113 8 1 226 345 531 4.20e-18 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554770 AT2G20570.1 49.012 253 90 12 1 234 187 419 1.79e-43 151
Msa0554770 AT2G20570.2 49.012 253 90 12 1 234 203 435 1.93e-43 152
Msa0554770 AT5G44190.1 45.833 240 85 7 1 231 181 384 1.59e-36 132
Msa0554770 AT2G20570.3 46.862 239 88 12 15 234 154 372 6.22e-33 122
Msa0554770 AT5G44190.2 60.227 88 32 1 1 88 181 265 1.21e-25 103
Msa0554770 AT4G18020.3 32.016 253 97 9 1 234 330 526 2.19e-11 63.5
Msa0554770 AT4G18020.2 32.016 253 97 9 1 234 330 526 2.19e-11 63.5
Msa0554770 AT4G18020.1 32.016 253 97 9 1 234 330 526 2.19e-11 63.5
Msa0554770 AT4G18020.6 32.016 253 97 9 1 234 330 526 2.19e-11 63.5
Msa0554770 AT4G18020.9 32.016 253 97 9 1 234 330 526 2.19e-11 63.5

Find 112 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCGGTGCCTTCAAGGATTT+TGG 0.156203 4_1:+52466177 Msa0554770:five_prime_UTR
GGCCGGATCATTGCGTTTAT+TGG 0.197058 4_1:-52468274 None:intergenic
CACCTCAAGATCCTTCATTT+TGG 0.206831 4_1:+52466749 Msa0554770:CDS
ATGCCATGGGGTGGGATGCC+GGG 0.306670 4_1:-52468607 None:intergenic
GGATGAGAAATCGTCGAATT+AGG 0.310005 4_1:-52469179 None:intergenic
AAACCCATGGTGGGTGCAGC+TGG 0.319978 4_1:-52466574 None:intergenic
AATCGTACATATATACAAAA+TGG 0.337228 4_1:-52469322 None:intergenic
ATGGGGACATCCTTCAAATA+TGG 0.339407 4_1:+52466657 Msa0554770:CDS
AAAACTAATTAATCCTTTAC+CGG 0.340492 4_1:+52469132 Msa0554770:three_prime_UTR
CATGCCATGGGGTGGGATGC+CGG 0.361244 4_1:-52468608 None:intergenic
AGATTAGATGCAACATCTAA+TGG 0.370709 4_1:-52469200 None:intergenic
ATACATGTAAGGGTCTAAAA+TGG 0.371409 4_1:-52466636 None:intergenic
TGGGGTGGGATGCCGGGGAT+TGG 0.376158 4_1:-52468601 None:intergenic
TGAGGAGGAGGAGGATGAGG+GGG 0.377528 4_1:-52466598 None:intergenic
TCATCCTCCTCCTCCTCATA+TGG 0.386130 4_1:+52466603 Msa0554770:CDS
ACAAATCTCCTGTGCAAGTC+TGG 0.392453 4_1:-52466124 None:intergenic
CCAGCACTTGATAGCGTAAT+GGG 0.402444 4_1:+52469055 Msa0554770:CDS
GAGGAGGAGGAGGATGAGGG+GGG 0.414573 4_1:-52466597 None:intergenic
GAGAGCATAGACGCAGCTAT+TGG 0.425120 4_1:+52468983 Msa0554770:CDS
TAACATTGCTAGTCACCTTC+AGG 0.436461 4_1:+52466231 Msa0554770:CDS
CCTTTACCGGGGAGCTAGCT+AGG 0.438569 4_1:+52469145 Msa0554770:three_prime_UTR
ATAATCTCCAAAATCCTTGA+AGG 0.440155 4_1:-52466184 None:intergenic
ATATGAGGAGGAGGAGGATG+AGG 0.442642 4_1:-52466601 None:intergenic
ACCACTGTTGTCAGAGGTGG+TGG 0.450953 4_1:-52468313 None:intergenic
TGGACAAGGCGGTGCCTTCA+AGG 0.452098 4_1:+52466170 Msa0554770:five_prime_UTR
GGTGGGAAACAATGTGTTCC+TGG 0.458402 4_1:-52468295 None:intergenic
ATGGTGGGTGCAGCTGGCCA+TGG 0.458606 4_1:-52466568 None:intergenic
TCGAAGAAGTGACCGGGAGC+AGG 0.463586 4_1:-52468661 None:intergenic
CATGAGAGTGGCTGCGGTGT+AGG 0.464099 4_1:-52466703 None:intergenic
AATCAAAGGAGACAAGTATA+TGG 0.464153 4_1:+52466514 Msa0554770:CDS
GAAGGTGACTAGCAATGTTA+TGG 0.464906 4_1:-52466228 None:intergenic
CTCCAATAAACGCAATGATC+CGG 0.470333 4_1:+52468272 Msa0554770:CDS
TGCCATGGGGTGGGATGCCG+GGG 0.471359 4_1:-52468606 None:intergenic
AAGCAGCAAGTTGGAATCAA+AGG 0.471928 4_1:+52466500 Msa0554770:CDS
ATGAGGAGGAGGAGGATGAG+GGG 0.473493 4_1:-52466599 None:intergenic
ATGGCCAGCTGCACCCACCA+TGG 0.477260 4_1:+52466570 Msa0554770:CDS
TGTTTATTGTGCAGGTGGAT+TGG 0.477271 4_1:+52466098 Msa0554770:five_prime_UTR
AGACAAGTATATGGTGGTGT+AGG 0.478471 4_1:+52466523 Msa0554770:CDS
GACAAGTATATGGTGGTGTA+GGG 0.478876 4_1:+52466524 Msa0554770:CDS
TGGCCAGCTGCACCCACCAT+GGG 0.485571 4_1:+52466571 Msa0554770:CDS
AATTAGTGTGTTTATTGTGC+AGG 0.486298 4_1:+52466090 Msa0554770:five_prime_UTR
CCTAGCTAGCTCCCCGGTAA+AGG 0.488512 4_1:-52469145 None:intergenic
CCATGGTTGCCACTACCACT+TGG 0.489750 4_1:+52469022 Msa0554770:CDS
AACATGCAGAGACCATCATT+TGG 0.489976 4_1:+52468574 Msa0554770:intron
GATCTGCTTTACACATGCCA+TGG 0.496492 4_1:-52468621 None:intergenic
TCCAGCACTTGATAGCGTAA+TGG 0.499694 4_1:+52469054 Msa0554770:CDS
ATTAGCACCCTTCCTGCTCC+CGG 0.500715 4_1:+52468649 Msa0554770:CDS
AGGATGTCCCCATACATGTA+AGG 0.503004 4_1:-52466647 None:intergenic
GAAGTGACCGGGAGCAGGAA+GGG 0.509953 4_1:-52468656 None:intergenic
CCCATTACGCTATCAAGTGC+TGG 0.514753 4_1:-52469055 None:intergenic
ATCTGCTTTACACATGCCAT+GGG 0.515933 4_1:-52468620 None:intergenic
GAAGGATCTTGAGGTGGTGG+AGG 0.522935 4_1:-52466742 None:intergenic
AATGAAGGATCTTGAGGTGG+TGG 0.528793 4_1:-52466745 None:intergenic
GCTTTGAGTCCAAGTGGTAG+TGG 0.528879 4_1:-52469031 None:intergenic
AAAGACTGGTCCATATTTGA+AGG 0.536097 4_1:-52466667 None:intergenic
GGAAACAATGTGTTCCTGGC+CGG 0.538523 4_1:-52468291 None:intergenic
TTTCTTCAAGTGCATGATGA+GGG 0.538544 4_1:-52469112 None:intergenic
TGGGAAGTCGAAGAAGTGAC+CGG 0.545060 4_1:-52468668 None:intergenic
TGGTGCAATGGTGCCATATG+AGG 0.549696 4_1:-52466616 None:intergenic
GGGATTGGACATCCAAATGA+TGG 0.551089 4_1:-52468586 None:intergenic
CTACACCGCAGCCACTCTCA+TGG 0.554231 4_1:+52466704 Msa0554770:CDS
GCTTTACACATGCCATGGGG+TGG 0.557961 4_1:-52468616 None:intergenic
TATGAGGAGGAGGAGGATGA+GGG 0.561254 4_1:-52466600 None:intergenic
TTGGCATTCTCACCACCAGC+AGG 0.563830 4_1:+52466768 Msa0554770:CDS
TAGTGTGTTTATTGTGCAGG+TGG 0.568854 4_1:+52466093 Msa0554770:five_prime_UTR
AAGTGCACGAGACACTCATC+AGG 0.570002 4_1:+52466054 Msa0554770:five_prime_UTR
AAACTAATTAATCCTTTACC+GGG 0.572727 4_1:+52469133 Msa0554770:three_prime_UTR
CTTCAAGTGCATGATGAGGG+TGG 0.573822 4_1:-52469109 None:intergenic
TGCCAAAATGAAGGATCTTG+AGG 0.576157 4_1:-52466751 None:intergenic
TCATTTGGATGTCCAATCCC+CGG 0.576190 4_1:+52468589 Msa0554770:CDS
CTTTACACATGCCATGGGGT+GGG 0.577896 4_1:-52468615 None:intergenic
ATCCCCGGCATCCCACCCCA+TGG 0.583757 4_1:+52468604 Msa0554770:CDS
GGTGCCATATGAGGAGGAGG+AGG 0.584245 4_1:-52466607 None:intergenic
GTGCAAGCTGTGGAACAGCT+AGG 0.587705 4_1:+52466145 Msa0554770:five_prime_UTR
ATAAACGCAATGATCCGGCC+AGG 0.588149 4_1:+52468277 Msa0554770:CDS
GTGAAGCAGAAGCAGCAAGT+TGG 0.590428 4_1:+52466491 Msa0554770:CDS
GGATGTCCCCATACATGTAA+GGG 0.590827 4_1:-52466646 None:intergenic
CCAAGTGGTAGTGGCAACCA+TGG 0.591902 4_1:-52469022 None:intergenic
AATGGTGCCATATGAGGAGG+AGG 0.593332 4_1:-52466610 None:intergenic
GGTGTCCATGAGAGTGGCTG+CGG 0.595402 4_1:-52466709 None:intergenic
ATTGGACACCAGACTTGCAC+AGG 0.600253 4_1:+52466116 Msa0554770:five_prime_UTR
TTTAGACCCTTACATGTATG+GGG 0.601372 4_1:+52466640 Msa0554770:CDS
TCACTTCTTCGACTTCCCAC+CGG 0.602135 4_1:+52468672 Msa0554770:CDS
GCCACTCTCATGGACACCAT+CGG 0.612134 4_1:+52466714 Msa0554770:CDS
AGAAGTGACCGGGAGCAGGA+AGG 0.612201 4_1:-52468657 None:intergenic
GCCACATGTGCAGAAAAGAC+TGG 0.621691 4_1:-52466681 None:intergenic
AATGCTCAAGCATTAGCGCA+TGG 0.622785 4_1:-52469297 None:intergenic
AGCTGTGGAACAGCTAGGAG+TGG 0.623334 4_1:+52466150 Msa0554770:five_prime_UTR
AGAGAGAAGTGATCAGTCCA+TGG 0.624850 4_1:+52466551 Msa0554770:CDS
GGCATGTGTAAAGCAGATCA+CGG 0.631742 4_1:+52468625 Msa0554770:CDS
GGGAAGTCGAAGAAGTGACC+GGG 0.633060 4_1:-52468667 None:intergenic
CAGGAGATTTGTGCAAGCTG+TGG 0.634615 4_1:+52466135 Msa0554770:five_prime_UTR
ACAAGTATATGGTGGTGTAG+GGG 0.636855 4_1:+52466525 Msa0554770:CDS
TGGTGAGAATGCCAAAATGA+AGG 0.637260 4_1:-52466760 None:intergenic
ACCGATGGTGTCCATGAGAG+TGG 0.639166 4_1:-52466715 None:intergenic
GTTACCACTGTTGTCAGAGG+TGG 0.641294 4_1:-52468316 None:intergenic
CAAAGGAGACAAGTATATGG+TGG 0.641945 4_1:+52466517 Msa0554770:CDS
TTGAAACCTAGCTAGCTCCC+CGG 0.643660 4_1:-52469151 None:intergenic
ATAGTTACCACTGTTGTCAG+AGG 0.658785 4_1:-52468319 None:intergenic
GGAACAGCTAGGAGTGGACA+AGG 0.659903 4_1:+52466156 Msa0554770:five_prime_UTR
AACTAATTAATCCTTTACCG+GGG 0.665216 4_1:+52469134 Msa0554770:three_prime_UTR
TAGAGAGAGCTACCTGCTGG+TGG 0.667063 4_1:-52466780 None:intergenic
GGTGGTGGAGGAGCTACCGA+TGG 0.688749 4_1:-52466730 None:intergenic
GCTGGAGCTTTGAGTCCAAG+TGG 0.690127 4_1:-52469037 None:intergenic
AAGGGTCTAAAATGGTGCAA+TGG 0.690674 4_1:-52466628 None:intergenic
ATGGGTGAACTACAAAGACA+AGG 0.697859 4_1:+52469073 Msa0554770:CDS
CCACTGTTGTCAGAGGTGGT+GGG 0.703169 4_1:-52468312 None:intergenic
CAAAATGAAGGATCTTGAGG+TGG 0.718294 4_1:-52466748 None:intergenic
CCCACCACCTCTGACAACAG+TGG 0.721504 4_1:+52468312 Msa0554770:CDS
TGCAATGGTGCCATATGAGG+AGG 0.727370 4_1:-52466613 None:intergenic
TCTGCTTTACACATGCCATG+GGG 0.759671 4_1:-52468619 None:intergenic
ACAGCTAGGAGTGGACAAGG+CGG 0.769326 4_1:+52466159 Msa0554770:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAATTAAGATTTCTTTT+TGG + chr4_1:52466857-52466876 Msa0554770:intron 10.0%
!! ATAAAAACAAATTATTGTTT+AGG + chr4_1:52466963-52466982 Msa0554770:intron 10.0%
!! AAAAAATTTATATATGAGAT+CGG + chr4_1:52467060-52467079 Msa0554770:intron 10.0%
!! AAAAAATTTATATATGAGAT+CGG + chr4_1:52467060-52467079 Msa0554770:intron 10.0%
!!! TCTCTTTTAATATTTTTTTT+GGG - chr4_1:52467257-52467276 None:intergenic 10.0%
!!! TTCTCTTTTAATATTTTTTT+TGG - chr4_1:52467258-52467277 None:intergenic 10.0%
!! ATAATAACTAAATATCATTT+GGG - chr4_1:52467686-52467705 None:intergenic 10.0%
!! TATAATAACTAAATATCATT+TGG - chr4_1:52467687-52467706 None:intergenic 10.0%
!! TTTGTCATATATTATATATA+AGG + chr4_1:52467848-52467867 Msa0554770:intron 10.0%
!!! CAAAATTTTTTTTTTTTTGA+GGG - chr4_1:52467996-52468015 None:intergenic 10.0%
!!! TCAAAATTTTTTTTTTTTTG+AGG - chr4_1:52467997-52468016 None:intergenic 10.0%
!!! ATGTGAAATTTTTTAATATA+TGG - chr4_1:52468772-52468791 None:intergenic 10.0%
!!! TTTTATTATTGCAGAAATAT+AGG + chr4_1:52466443-52466462 Msa0554770:intron 15.0%
!! TATACAATGATAGATATATA+GGG - chr4_1:52466830-52466849 None:intergenic 15.0%
!!! ACAATTAAGATTTTAAACTT+TGG + chr4_1:52466890-52466909 Msa0554770:intron 15.0%
!!! TAGGAAAATATACAATTTTT+AGG + chr4_1:52467096-52467115 Msa0554770:intron 15.0%
!!! TAGGAAAATATACAATTTTT+AGG + chr4_1:52467096-52467115 Msa0554770:intron 15.0%
!! TGTCCAAATAATATTTATTT+AGG + chr4_1:52467347-52467366 Msa0554770:intron 15.0%
!! GTCCAAATAATATTTATTTA+GGG + chr4_1:52467348-52467367 Msa0554770:intron 15.0%
!! AACCCTAAATAAATATTATT+TGG - chr4_1:52467353-52467372 None:intergenic 15.0%
!! CAAATGGTATATATAAAAAT+TGG - chr4_1:52467413-52467432 None:intergenic 15.0%
!! TAATAACTAAATATCATTTG+GGG - chr4_1:52467685-52467704 None:intergenic 15.0%
!! ATATATTATATATAAGGCAT+GGG + chr4_1:52467854-52467873 Msa0554770:intron 15.0%
!!! TTGTTTTAAAATCTTTTTCT+AGG - chr4_1:52467912-52467931 None:intergenic 15.0%
!!! TTTTTTTTTCTTCTTTCATT+TGG - chr4_1:52469269-52469288 None:intergenic 15.0%
!! CTATACAATGATAGATATAT+AGG - chr4_1:52466831-52466850 None:intergenic 20.0%
!! GTACAAACTGAAATAATTAA+GGG - chr4_1:52466926-52466945 None:intergenic 20.0%
!! AGTACAAACTGAAATAATTA+AGG - chr4_1:52466927-52466946 None:intergenic 20.0%
!!! GAAAATATACAATTTTTAGG+AGG + chr4_1:52467099-52467118 Msa0554770:intron 20.0%
!!! GAAAATATACAATTTTTAGG+AGG + chr4_1:52467099-52467118 Msa0554770:intron 20.0%
!!! TTTTGAATATAACGAACAAA+TGG - chr4_1:52467429-52467448 None:intergenic 20.0%
!!! TTTGTCGACTTTTATATTTT+AGG + chr4_1:52467521-52467540 Msa0554770:intron 20.0%
!! TTTAGGAAATATCATTTCAT+AGG + chr4_1:52467538-52467557 Msa0554770:intron 20.0%
!! CATATATTATATATAAGGCA+TGG + chr4_1:52467853-52467872 Msa0554770:intron 20.0%
!! TTGTTATAAATCAAAATTCG+AGG + chr4_1:52468117-52468136 Msa0554770:intron 20.0%
!!! ATTACATCACTTTACTATTT+TGG + chr4_1:52468344-52468363 Msa0554770:intron 20.0%
!!! TGTCAATCTTATCTTTAAAA+AGG - chr4_1:52468406-52468425 None:intergenic 20.0%
!! TGTGCTATATTTATATATGT+TGG - chr4_1:52468458-52468477 None:intergenic 20.0%
!! TTATTCTCCAAATATAAGTT+TGG + chr4_1:52468528-52468547 Msa0554770:intron 20.0%
!!! TGTTATGTTATTTTCCTTTA+TGG - chr4_1:52468558-52468577 None:intergenic 20.0%
!!! GAAATTTTTTAATATATGGC+TGG - chr4_1:52468768-52468787 None:intergenic 20.0%
!!! CTTTTAGGTGTTTTTATATT+GGG - chr4_1:52468878-52468897 None:intergenic 20.0%
!! AAAACTAATTAATCCTTTAC+CGG + chr4_1:52469132-52469151 Msa0554770:three_prime_UTR 20.0%
!! AATCGTACATATATACAAAA+TGG - chr4_1:52469325-52469344 None:intergenic 20.0%
!!! ATTTTGTATATATGTACGAT+TGG + chr4_1:52469324-52469343 Msa0554770:three_prime_UTR 20.0%
! CATATGAATTTCAAGCATAT+AGG + chr4_1:52466256-52466275 Msa0554770:intron 25.0%
!!! CACTATTTATCAAGTTTTGA+TGG + chr4_1:52466379-52466398 Msa0554770:intron 25.0%
! TGATAGATATATAGGGAATT+TGG - chr4_1:52466823-52466842 None:intergenic 25.0%
!! TTTTTATATATGAAACCAGC+GGG - chr4_1:52466950-52466969 None:intergenic 25.0%
!! GTTTTTATATATGAAACCAG+CGG - chr4_1:52466951-52466970 None:intergenic 25.0%
! AAATTTATATATGAGATCGG+AGG + chr4_1:52467063-52467082 Msa0554770:intron 25.0%
! AATTTATATATGAGATCGGA+GGG + chr4_1:52467064-52467083 Msa0554770:intron 25.0%
! AAATTTATATATGAGATCGG+AGG + chr4_1:52467063-52467082 Msa0554770:intron 25.0%
! AATTTATATATGAGATCGGA+GGG + chr4_1:52467064-52467083 Msa0554770:intron 25.0%
!!! GTGCTCAAATATTGTTATTT+GGG - chr4_1:52467226-52467245 None:intergenic 25.0%
!! TGTGCTCAAATATTGTTATT+TGG - chr4_1:52467227-52467246 None:intergenic 25.0%
! AACAAGGATTCAATTATATG+TGG - chr4_1:52467973-52467992 None:intergenic 25.0%
!!! TTTTTTTTTTTGAGGGAACA+AGG - chr4_1:52467989-52468008 None:intergenic 25.0%
!!! GCTTTTAGGTGTTTTTATAT+TGG - chr4_1:52468879-52468898 None:intergenic 25.0%
! AAACTAATTAATCCTTTACC+GGG + chr4_1:52469133-52469152 Msa0554770:three_prime_UTR 25.0%
AATTAGTGTGTTTATTGTGC+AGG + chr4_1:52466090-52466109 Msa0554770:five_prime_UTR 30.0%
ATAATCTCCAAAATCCTTGA+AGG - chr4_1:52466187-52466206 None:intergenic 30.0%
!! TTCAAGGATTTTGGAGATTA+TGG + chr4_1:52466186-52466205 Msa0554770:exon 30.0%
!! TCAAGGATTTTGGAGATTAT+GGG + chr4_1:52466187-52466206 Msa0554770:exon 30.0%
TGAAATTCATATGTACCTGA+AGG - chr4_1:52466249-52466268 None:intergenic 30.0%
TTCAAGCATATAGGAGAAAA+AGG + chr4_1:52466265-52466284 Msa0554770:intron 30.0%
AATCAAAGGAGACAAGTATA+TGG + chr4_1:52466514-52466533 Msa0554770:CDS 30.0%
ATACATGTAAGGGTCTAAAA+TGG - chr4_1:52466639-52466658 None:intergenic 30.0%
! ATTTTAGACCCTTACATGTA+TGG + chr4_1:52466638-52466657 Msa0554770:CDS 30.0%
! TTTTAGACCCTTACATGTAT+GGG + chr4_1:52466639-52466658 Msa0554770:CDS 30.0%
AAATTAGAGAAAGACTTTCG+TGG - chr4_1:52467380-52467399 None:intergenic 30.0%
AGGATTCAATTATATGTGGT+TGG - chr4_1:52467969-52467988 None:intergenic 30.0%
! TTGTCTTCTACTCTGAATTT+TGG + chr4_1:52468378-52468397 Msa0554770:intron 30.0%
ATGTTGAATGCATGTATGTA+TGG - chr4_1:52468714-52468733 None:intergenic 30.0%
! TTGAAATCTATGGAGCTTTT+AGG - chr4_1:52468893-52468912 None:intergenic 30.0%
TAAAAGCTCCATAGATTTCA+AGG + chr4_1:52468892-52468911 Msa0554770:intron 30.0%
! GAGATGTTTTATCAAAACCA+TGG + chr4_1:52469005-52469024 Msa0554770:CDS 30.0%
AACTAATTAATCCTTTACCG+GGG + chr4_1:52469134-52469153 Msa0554770:three_prime_UTR 30.0%
AGATTAGATGCAACATCTAA+TGG - chr4_1:52469203-52469222 None:intergenic 30.0%
ATACTCGTACGATGTCTTTA+TGG + chr4_1:52466332-52466351 Msa0554770:intron 35.0%
TTTAGACCCTTACATGTATG+GGG + chr4_1:52466640-52466659 Msa0554770:CDS 35.0%
! AAAGACTGGTCCATATTTGA+AGG - chr4_1:52466670-52466689 None:intergenic 35.0%
!!! AATTTGGCTGCTATTTTCAG+TGG - chr4_1:52466807-52466826 None:intergenic 35.0%
!! TTTTAGGAGGAACACTTACT+TGG + chr4_1:52467112-52467131 Msa0554770:intron 35.0%
TTTAGGAGGAACACTTACTT+GGG + chr4_1:52467113-52467132 Msa0554770:intron 35.0%
!! TTTTAGGAGGAACACTTACT+TGG + chr4_1:52467112-52467131 Msa0554770:intron 35.0%
TTTAGGAGGAACACTTACTT+GGG + chr4_1:52467113-52467132 Msa0554770:intron 35.0%
TCGATATGTACAAGTACGTT+TGG - chr4_1:52467774-52467793 None:intergenic 35.0%
!!! GTTCTTCTTCTTTTTTGACG+AGG - chr4_1:52468022-52468041 None:intergenic 35.0%
TGGTCAGCCAAACTTATATT+TGG - chr4_1:52468538-52468557 None:intergenic 35.0%
ATAAGTTTGGCTGACCATAA+AGG + chr4_1:52468541-52468560 Msa0554770:intron 35.0%
ACATTGTATGAGAGACGATA+AGG + chr4_1:52468788-52468807 Msa0554770:intron 35.0%
CATTGTATGAGAGACGATAA+GGG + chr4_1:52468789-52468808 Msa0554770:intron 35.0%
! TAAGGGCATGTGTTTATAAG+TGG + chr4_1:52468806-52468825 Msa0554770:intron 35.0%
! AAGGGCATGTGTTTATAAGT+GGG + chr4_1:52468807-52468826 Msa0554770:intron 35.0%
TACTCATGCCTTGAAATCTA+TGG - chr4_1:52468903-52468922 None:intergenic 35.0%
TTTCTTCAAGTGCATGATGA+GGG - chr4_1:52469115-52469134 None:intergenic 35.0%
! TTTTCTTCAAGTGCATGATG+AGG - chr4_1:52469116-52469135 None:intergenic 35.0%
!! AGTGTCTCGTGCACTTTTTA+AGG - chr4_1:52466050-52466069 None:intergenic 40.0%
TAGTGTGTTTATTGTGCAGG+TGG + chr4_1:52466093-52466112 Msa0554770:five_prime_UTR 40.0%
TGTTTATTGTGCAGGTGGAT+TGG + chr4_1:52466098-52466117 Msa0554770:five_prime_UTR 40.0%
GAAGGTGACTAGCAATGTTA+TGG - chr4_1:52466231-52466250 None:intergenic 40.0%
TAACATTGCTAGTCACCTTC+AGG + chr4_1:52466231-52466250 Msa0554770:CDS 40.0%
! AAGCAGCAAGTTGGAATCAA+AGG + chr4_1:52466500-52466519 Msa0554770:CDS 40.0%
CAAAGGAGACAAGTATATGG+TGG + chr4_1:52466517-52466536 Msa0554770:CDS 40.0%
! AGACAAGTATATGGTGGTGT+AGG + chr4_1:52466523-52466542 Msa0554770:CDS 40.0%
! GACAAGTATATGGTGGTGTA+GGG + chr4_1:52466524-52466543 Msa0554770:CDS 40.0%
! ACAAGTATATGGTGGTGTAG+GGG + chr4_1:52466525-52466544 Msa0554770:CDS 40.0%
! AAGGGTCTAAAATGGTGCAA+TGG - chr4_1:52466631-52466650 None:intergenic 40.0%
ATGGGGACATCCTTCAAATA+TGG + chr4_1:52466657-52466676 Msa0554770:CDS 40.0%
CAAAATGAAGGATCTTGAGG+TGG - chr4_1:52466751-52466770 None:intergenic 40.0%
! CACCTCAAGATCCTTCATTT+TGG + chr4_1:52466749-52466768 Msa0554770:CDS 40.0%
TGCCAAAATGAAGGATCTTG+AGG - chr4_1:52466754-52466773 None:intergenic 40.0%
TGGTGAGAATGCCAAAATGA+AGG - chr4_1:52466763-52466782 None:intergenic 40.0%
CTCCAATAAACGCAATGATC+CGG + chr4_1:52468272-52468291 Msa0554770:CDS 40.0%
ATAGTTACCACTGTTGTCAG+AGG - chr4_1:52468322-52468341 None:intergenic 40.0%
AACATGCAGAGACCATCATT+TGG + chr4_1:52468574-52468593 Msa0554770:intron 40.0%
ATCTGCTTTACACATGCCAT+GGG - chr4_1:52468623-52468642 None:intergenic 40.0%
AATGCATGTATGTATGGCGA+AGG - chr4_1:52468708-52468727 None:intergenic 40.0%
AGGGCATGTGTTTATAAGTG+GGG + chr4_1:52468808-52468827 Msa0554770:intron 40.0%
ATGGGTGAACTACAAAGACA+AGG + chr4_1:52469073-52469092 Msa0554770:CDS 40.0%
GGATGAGAAATCGTCGAATT+AGG - chr4_1:52469182-52469201 None:intergenic 40.0%
ACAAATCTCCTGTGCAAGTC+TGG - chr4_1:52466127-52466146 None:intergenic 45.0%
AGAGAGAAGTGATCAGTCCA+TGG + chr4_1:52466551-52466570 Msa0554770:CDS 45.0%
GGATGTCCCCATACATGTAA+GGG - chr4_1:52466649-52466668 None:intergenic 45.0%
AGGATGTCCCCATACATGTA+AGG - chr4_1:52466650-52466669 None:intergenic 45.0%
! ACCAGTCTTTTCTGCACATG+TGG + chr4_1:52466680-52466699 Msa0554770:CDS 45.0%
AATGAAGGATCTTGAGGTGG+TGG - chr4_1:52466748-52466767 None:intergenic 45.0%
ATTTCAGTTTGTACTCCCGC+TGG + chr4_1:52466932-52466951 Msa0554770:intron 45.0%
!! ATGAGATCGGAGGGAGTATT+TGG + chr4_1:52467073-52467092 Msa0554770:intron 45.0%
!! GATCGGAGGGAGTATTTGAT+AGG + chr4_1:52467159-52467178 Msa0554770:intron 45.0%
AGAGTAGAAGACAACGTGCA+TGG - chr4_1:52468372-52468391 None:intergenic 45.0%
GGGATTGGACATCCAAATGA+TGG - chr4_1:52468589-52468608 None:intergenic 45.0%
TCATTTGGATGTCCAATCCC+CGG + chr4_1:52468589-52468608 Msa0554770:CDS 45.0%
TCTGCTTTACACATGCCATG+GGG - chr4_1:52468622-52468641 None:intergenic 45.0%
GATCTGCTTTACACATGCCA+TGG - chr4_1:52468624-52468643 None:intergenic 45.0%
GGCATGTGTAAAGCAGATCA+CGG + chr4_1:52468625-52468644 Msa0554770:CDS 45.0%
!! GAAGGAAATTCAGTACCGGT+GGG - chr4_1:52468690-52468709 None:intergenic 45.0%
TGGCGAAGGAAATTCAGTAC+CGG - chr4_1:52468694-52468713 None:intergenic 45.0%
!! TCCAGCACTTGATAGCGTAA+TGG + chr4_1:52469054-52469073 Msa0554770:CDS 45.0%
!! CCAGCACTTGATAGCGTAAT+GGG + chr4_1:52469055-52469074 Msa0554770:CDS 45.0%
AATGCTCAAGCATTAGCGCA+TGG - chr4_1:52469300-52469319 None:intergenic 45.0%
!! TTATTTAACTATTAAATTAA+AGG + chr4_1:52467748-52467767 Msa0554770:intron 5.0%
AAGTGCACGAGACACTCATC+AGG + chr4_1:52466054-52466073 Msa0554770:five_prime_UTR 50.0%
ATTGGACACCAGACTTGCAC+AGG + chr4_1:52466116-52466135 Msa0554770:five_prime_UTR 50.0%
CAGGAGATTTGTGCAAGCTG+TGG + chr4_1:52466135-52466154 Msa0554770:five_prime_UTR 50.0%
GTGAAGCAGAAGCAGCAAGT+TGG + chr4_1:52466491-52466510 Msa0554770:CDS 50.0%
TATGAGGAGGAGGAGGATGA+GGG - chr4_1:52466603-52466622 None:intergenic 50.0%
ATATGAGGAGGAGGAGGATG+AGG - chr4_1:52466604-52466623 None:intergenic 50.0%
TCATCCTCCTCCTCCTCATA+TGG + chr4_1:52466603-52466622 Msa0554770:CDS 50.0%
!! AATGGTGCCATATGAGGAGG+AGG - chr4_1:52466613-52466632 None:intergenic 50.0%
!! TGCAATGGTGCCATATGAGG+AGG - chr4_1:52466616-52466635 None:intergenic 50.0%
!! TGGTGCAATGGTGCCATATG+AGG - chr4_1:52466619-52466638 None:intergenic 50.0%
GCCACATGTGCAGAAAAGAC+TGG - chr4_1:52466684-52466703 None:intergenic 50.0%
!! GATCGGAGGGAGTATTTGGT+AGG + chr4_1:52467077-52467096 Msa0554770:intron 50.0%
GGCCGGATCATTGCGTTTAT+TGG - chr4_1:52468277-52468296 None:intergenic 50.0%
ATAAACGCAATGATCCGGCC+AGG + chr4_1:52468277-52468296 Msa0554770:CDS 50.0%
GGAAACAATGTGTTCCTGGC+CGG - chr4_1:52468294-52468313 None:intergenic 50.0%
GGTGGGAAACAATGTGTTCC+TGG - chr4_1:52468298-52468317 None:intergenic 50.0%
GTTACCACTGTTGTCAGAGG+TGG - chr4_1:52468319-52468338 None:intergenic 50.0%
CTTTACACATGCCATGGGGT+GGG - chr4_1:52468618-52468637 None:intergenic 50.0%
TGGGAAGTCGAAGAAGTGAC+CGG - chr4_1:52468671-52468690 None:intergenic 50.0%
TCACTTCTTCGACTTCCCAC+CGG + chr4_1:52468672-52468691 Msa0554770:CDS 50.0%
! CGAAGGAAATTCAGTACCGG+TGG - chr4_1:52468691-52468710 None:intergenic 50.0%
! GAGAGCATAGACGCAGCTAT+TGG + chr4_1:52468983-52469002 Msa0554770:CDS 50.0%
! GCTTTGAGTCCAAGTGGTAG+TGG - chr4_1:52469034-52469053 None:intergenic 50.0%
CCCATTACGCTATCAAGTGC+TGG - chr4_1:52469058-52469077 None:intergenic 50.0%
CTTCAAGTGCATGATGAGGG+TGG - chr4_1:52469112-52469131 None:intergenic 50.0%
TTGAAACCTAGCTAGCTCCC+CGG - chr4_1:52469154-52469173 None:intergenic 50.0%
GTGCAAGCTGTGGAACAGCT+AGG + chr4_1:52466145-52466164 Msa0554770:five_prime_UTR 55.0%
AGCTGTGGAACAGCTAGGAG+TGG + chr4_1:52466150-52466169 Msa0554770:five_prime_UTR 55.0%
GGAACAGCTAGGAGTGGACA+AGG + chr4_1:52466156-52466175 Msa0554770:five_prime_UTR 55.0%
ACAGCTAGGAGTGGACAAGG+CGG + chr4_1:52466159-52466178 Msa0554770:five_prime_UTR 55.0%
! GGCGGTGCCTTCAAGGATTT+TGG + chr4_1:52466177-52466196 Msa0554770:five_prime_UTR 55.0%
ATGAGGAGGAGGAGGATGAG+GGG - chr4_1:52466602-52466621 None:intergenic 55.0%
GCCACTCTCATGGACACCAT+CGG + chr4_1:52466714-52466733 Msa0554770:CDS 55.0%
ACCGATGGTGTCCATGAGAG+TGG - chr4_1:52466718-52466737 None:intergenic 55.0%
! GAAGGATCTTGAGGTGGTGG+AGG - chr4_1:52466745-52466764 None:intergenic 55.0%
TTGGCATTCTCACCACCAGC+AGG + chr4_1:52466768-52466787 Msa0554770:CDS 55.0%
TAGAGAGAGCTACCTGCTGG+TGG - chr4_1:52466783-52466802 None:intergenic 55.0%
GGTTAGAGAGAGCTACCTGC+TGG - chr4_1:52466786-52466805 None:intergenic 55.0%
CCACTGTTGTCAGAGGTGGT+GGG - chr4_1:52468315-52468334 None:intergenic 55.0%
ACCACTGTTGTCAGAGGTGG+TGG - chr4_1:52468316-52468335 None:intergenic 55.0%
GCTTTACACATGCCATGGGG+TGG - chr4_1:52468619-52468638 None:intergenic 55.0%
ATTAGCACCCTTCCTGCTCC+CGG + chr4_1:52468649-52468668 Msa0554770:CDS 55.0%
GGGAAGTCGAAGAAGTGACC+GGG - chr4_1:52468670-52468689 None:intergenic 55.0%
!! CCAAGTGGTAGTGGCAACCA+TGG - chr4_1:52469025-52469044 None:intergenic 55.0%
CCATGGTTGCCACTACCACT+TGG + chr4_1:52469022-52469041 Msa0554770:CDS 55.0%
!! GCTGGAGCTTTGAGTCCAAG+TGG - chr4_1:52469040-52469059 None:intergenic 55.0%
TGGACAAGGCGGTGCCTTCA+AGG + chr4_1:52466170-52466189 Msa0554770:five_prime_UTR 60.0%
!! AAACCCATGGTGGGTGCAGC+TGG - chr4_1:52466577-52466596 None:intergenic 60.0%
TGAGGGGGGAAACCCATGGT+GGG - chr4_1:52466586-52466605 None:intergenic 60.0%
ATGAGGGGGGAAACCCATGG+TGG - chr4_1:52466587-52466606 None:intergenic 60.0%
AGGATGAGGGGGGAAACCCA+TGG - chr4_1:52466590-52466609 None:intergenic 60.0%
TGAGGAGGAGGAGGATGAGG+GGG - chr4_1:52466601-52466620 None:intergenic 60.0%
! GGTGCCATATGAGGAGGAGG+AGG - chr4_1:52466610-52466629 None:intergenic 60.0%
CATGAGAGTGGCTGCGGTGT+AGG - chr4_1:52466706-52466725 None:intergenic 60.0%
CTACACCGCAGCCACTCTCA+TGG + chr4_1:52466704-52466723 Msa0554770:CDS 60.0%
GGTGTCCATGAGAGTGGCTG+CGG - chr4_1:52466712-52466731 None:intergenic 60.0%
CCCACCACCTCTGACAACAG+TGG + chr4_1:52468312-52468331 Msa0554770:CDS 60.0%
GAAGTGACCGGGAGCAGGAA+GGG - chr4_1:52468659-52468678 None:intergenic 60.0%
AGAAGTGACCGGGAGCAGGA+AGG - chr4_1:52468660-52468679 None:intergenic 60.0%
TCGAAGAAGTGACCGGGAGC+AGG - chr4_1:52468664-52468683 None:intergenic 60.0%
CCTAGCTAGCTCCCCGGTAA+AGG - chr4_1:52469148-52469167 None:intergenic 60.0%
CCTTTACCGGGGAGCTAGCT+AGG + chr4_1:52469145-52469164 Msa0554770:three_prime_UTR 60.0%
!! ATGGTGGGTGCAGCTGGCCA+TGG - chr4_1:52466571-52466590 None:intergenic 65.0%
ATGGCCAGCTGCACCCACCA+TGG + chr4_1:52466570-52466589 Msa0554770:CDS 65.0%
TGGCCAGCTGCACCCACCAT+GGG + chr4_1:52466571-52466590 Msa0554770:CDS 65.0%
GAGGAGGAGGAGGATGAGGG+GGG - chr4_1:52466600-52466619 None:intergenic 65.0%
!! GGTGGTGGAGGAGCTACCGA+TGG - chr4_1:52466733-52466752 None:intergenic 65.0%
ATGCCATGGGGTGGGATGCC+GGG - chr4_1:52468610-52468629 None:intergenic 65.0%
CATGCCATGGGGTGGGATGC+CGG - chr4_1:52468611-52468630 None:intergenic 65.0%
TGGGGTGGGATGCCGGGGAT+TGG - chr4_1:52468604-52468623 None:intergenic 70.0%
ATCCCCGGCATCCCACCCCA+TGG + chr4_1:52468604-52468623 Msa0554770:CDS 70.0%
TGCCATGGGGTGGGATGCCG+GGG - chr4_1:52468609-52468628 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 52465993 52469369 52465993 ID=Msa0554770;Name=Msa0554770
chr4_1 mRNA 52465993 52469369 52465993 ID=Msa0554770-mRNA-1;Parent=Msa0554770;Name=Msa0554770-mRNA-1;_AED=0.04;_eAED=0.04;_QI=212|1|1|1|1|1|5|240|235
chr4_1 exon 52465993 52466252 52465993 ID=Msa0554770-mRNA-1:exon:15085;Parent=Msa0554770-mRNA-1
chr4_1 exon 52466457 52466789 52466457 ID=Msa0554770-mRNA-1:exon:15086;Parent=Msa0554770-mRNA-1
chr4_1 exon 52468271 52468333 52468271 ID=Msa0554770-mRNA-1:exon:15087;Parent=Msa0554770-mRNA-1
chr4_1 exon 52468583 52468693 52468583 ID=Msa0554770-mRNA-1:exon:15088;Parent=Msa0554770-mRNA-1
chr4_1 exon 52468977 52469369 52468977 ID=Msa0554770-mRNA-1:exon:15089;Parent=Msa0554770-mRNA-1
chr4_1 five_prime_UTR 52465993 52466204 52465993 ID=Msa0554770-mRNA-1:five_prime_utr;Parent=Msa0554770-mRNA-1
chr4_1 CDS 52466205 52466252 52466205 ID=Msa0554770-mRNA-1:cds;Parent=Msa0554770-mRNA-1
chr4_1 CDS 52466457 52466789 52466457 ID=Msa0554770-mRNA-1:cds;Parent=Msa0554770-mRNA-1
chr4_1 CDS 52468271 52468333 52468271 ID=Msa0554770-mRNA-1:cds;Parent=Msa0554770-mRNA-1
chr4_1 CDS 52468583 52468693 52468583 ID=Msa0554770-mRNA-1:cds;Parent=Msa0554770-mRNA-1
chr4_1 CDS 52468977 52469129 52468977 ID=Msa0554770-mRNA-1:cds;Parent=Msa0554770-mRNA-1
chr4_1 three_prime_UTR 52469130 52469369 52469130 ID=Msa0554770-mRNA-1:three_prime_utr;Parent=Msa0554770-mRNA-1
Gene Sequence

>Msa0554770

ATGGGAATTGATTGTCTCACTCGCCATAACATTGCTAGTCACCTTCAGAAATATAGGTCACATAGAAAACATTTGCTAGCGCGTGAAGCAGAAGCAGCAAGTTGGAATCAAAGGAGACAAGTATATGGTGGTGTAGGGGTGAAGAGAGAAGTGATCAGTCCATGGCCAGCTGCACCCACCATGGGTTTCCCCCCTCATCCTCCTCCTCCTCATATGGCACCATTGCACCATTTTAGACCCTTACATGTATGGGGACATCCTTCAAATATGGACCAGTCTTTTCTGCACATGTGGCCTACACCGCAGCCACTCTCATGGACACCATCGGTAGCTCCTCCACCACCTCAAGATCCTTCATTTTGGCATTCTCACCACCAGCAGACTCCAATAAACGCAATGATCCGGCCAGGAACACATTGTTTCCCACCACCTCTGACAACAGTGAGACCATCATTTGGATGTCCAATCCCCGGCATCCCACCCCATGGCATGTGTAAAGCAGATCACGGCATTAGCACCCTTCCTGCTCCCGGTCACTTCTTCGACTTCCCACCGTCAAATGAGAGCATAGACGCAGCTATTGGAGATGTTTTATCAAAACCATGGTTGCCACTACCACTTGGACTCAAAGCTCCAGCACTTGATAGCGTAATGGGTGAACTACAAAGACAAGGAATTTCAAACATTCCACCCTCATCATGCACTTGA

Protein sequence

>Msa0554770

MGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWNQRRQVYGGVGVKREVISPWPAAPTMGFPPHPPPPHMAPLHHFRPLHVWGHPSNMDQSFLHMWPTPQPLSWTPSVAPPPPQDPSFWHSHHQQTPINAMIRPGTHCFPPPLTTVRPSFGCPIPGIPPHGMCKADHGISTLPAPGHFFDFPPSNESIDAAIGDVLSKPWLPLPLGLKAPALDSVMGELQRQGISNIPPSSCT*