AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0460510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460510 MtrunA17_Chr3g0110001 96.143 363 14 0 1 363 1 363 0.0 724
Msa0460510 MtrunA17_Chr6g0464971 53.782 357 161 2 7 363 9 361 7.38e-140 401
Msa0460510 MtrunA17_Chr6g0465111 53.444 363 165 2 1 363 1 359 7.44e-140 401
Msa0460510 MtrunA17_Chr6g0465121 51.791 363 166 3 1 363 14 367 8.39e-133 384
Msa0460510 MtrunA17_Chr6g0464961 53.221 357 163 2 7 363 31 383 4.80e-130 379
Msa0460510 MtrunA17_Chr1g0200981 49.300 357 177 2 7 363 6 358 2.62e-123 359
Msa0460510 MtrunA17_Chr6g0477771 48.907 366 180 4 1 363 1 362 1.03e-120 353
Msa0460510 MtrunA17_Chr6g0464931 61.765 102 39 0 7 108 9 110 2.68e-36 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460510 AT4G09670.1 50.964 363 174 2 1 363 1 359 8.65e-133 384
Msa0460510 AT1G66130.1 50.815 368 172 5 1 363 1 364 2.25e-127 370
Msa0460510 AT1G34200.1 45.055 364 184 5 1 363 1 349 2.03e-108 322

Find 123 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCAAGTATTAGAGATTA+TGG 0.187812 3_3:+57930728 Msa0460510:CDS
TGAGTCTTTCTACTAATTTC+TGG 0.203414 3_3:-57930773 None:intergenic
GGCCAATGGTGTGCAGTTTA+TGG 0.258616 3_3:+57929353 Msa0460510:CDS
GCCAACAACTCAAGAATTCT+TGG 0.283873 3_3:+57930256 Msa0460510:CDS
ACTGCATTGGTGCATCCTTA+TGG 0.311051 3_3:+57930342 Msa0460510:CDS
TTGTAAACTACCTAGCTATA+AGG 0.315546 3_3:-57930849 None:intergenic
CTTTCTAATTCCGATGGTAT+TGG 0.331158 3_3:+57929432 Msa0460510:CDS
CCAGCCAGTGTAAGAATCTA+TGG 0.331530 3_3:+57929156 Msa0460510:CDS
GCTTCATTTGACTTCACATT+TGG 0.336307 3_3:+57930596 Msa0460510:CDS
TCCAAGAATTCTTGAGTTGT+TGG 0.338304 3_3:-57930257 None:intergenic
TTGCAGGGGTTCTAGATCTT+AGG 0.345264 3_3:+57931024 Msa0460510:three_prime_UTR
TTGCAAGTATTAGAGATTAT+GGG 0.349073 3_3:+57930729 Msa0460510:CDS
GATGAGGTTGTGGAGGATTC+AGG 0.351521 3_3:+57929186 Msa0460510:CDS
CTTGTAGCCCTTTGCCCATA+AGG 0.361945 3_3:-57930357 None:intergenic
GGTCTCAGCCTTCTACAAAA+TGG 0.364608 3_3:+57930750 Msa0460510:CDS
GCGAAAGATACAGTGCGTTT+TGG 0.371856 3_3:+57929003 Msa0460510:CDS
GAAGCACTAGTCTCCTTGTA+TGG 0.385920 3_3:-57930578 None:intergenic
AAAATAACCAAGTGTGTGTT+TGG 0.390831 3_3:+57930915 Msa0460510:three_prime_UTR
ACAATTATGTCCCTGGTTGC+AGG 0.393455 3_3:+57931008 Msa0460510:three_prime_UTR
CTGCATTGGTGCATCCTTAT+GGG 0.395767 3_3:+57930343 Msa0460510:CDS
CAATGGGTCTATGCATCTTA+AGG 0.404896 3_3:+57930544 Msa0460510:CDS
ATATTTGCAACTGTTTGATT+TGG 0.405206 3_3:-57930470 None:intergenic
TTGGATGCTCTTGGTGCCCT+TGG 0.407577 3_3:+57930305 Msa0460510:CDS
GTCTTTGAGTGCTCAACAAC+GGG 0.419878 3_3:-57931155 Msa0460520:CDS
CTACCTAGCTATAAGGAAAC+AGG 0.424774 3_3:-57930842 None:intergenic
TTGGCAACATGAACTTCCTC+TGG 0.425477 3_3:-57930659 None:intergenic
AATCACATCTTCTTTGCAAT+GGG 0.432768 3_3:+57930442 Msa0460510:CDS
TTGGCATTGTTGATGTGCTA+TGG 0.440696 3_3:-57930238 None:intergenic
GCCGCGTTTCGTGTGACGTC+GGG 0.440927 3_3:-57930404 None:intergenic
ACCTCACGTGCAGACTCGTT+GGG 0.443029 3_3:-57929233 None:intergenic
AATTTGTTGATCTTCACATT+GGG 0.460791 3_3:+57930624 Msa0460510:CDS
GCATGTGCTGGTGGAGAAGC+CGG 0.461905 3_3:+57929284 Msa0460510:CDS
CAATCACATCTTCTTTGCAA+TGG 0.469069 3_3:+57930441 Msa0460510:CDS
ATCTAGAACCCCTGCAACCA+GGG 0.471463 3_3:-57931018 None:intergenic
ATTTCTTTCTCACACGTCCA+TGG 0.472573 3_3:+57930502 Msa0460510:CDS
TGATGATACAAGAGTTTGCT+AGG 0.472779 3_3:+57930702 Msa0460510:CDS
CAACGAGTCTGCACGTGAGG+TGG 0.479606 3_3:+57929235 Msa0460510:CDS
TGATATGGAGCGGCTTCCTA+TGG 0.484794 3_3:-57929100 None:intergenic
TTGCAACTGTTTGATTTGGT+TGG 0.486478 3_3:-57930466 None:intergenic
GTATCATCAAAGCTTCTTGA+GGG 0.492116 3_3:-57930688 None:intergenic
CTTGATCTTTCTAATTCCGA+TGG 0.493134 3_3:+57929426 Msa0460510:CDS
TGTTCCATGTTCAAAGTCCT+AGG 0.493353 3_3:-57929399 None:intergenic
CAATTATGTCCCTGGTTGCA+GGG 0.497640 3_3:+57931009 Msa0460510:three_prime_UTR
ATGGCGGAGATGATGGCGTT+GGG 0.501964 3_3:-57929081 None:intergenic
GGAAGCGCGGTGACGGTGGT+TGG 0.503525 3_3:-57930383 None:intergenic
AATTAGTAGAAAGACTCAAT+TGG 0.503887 3_3:+57930778 Msa0460510:CDS
TATTAGAATGATGATACAAA+CGG 0.504014 3_3:+57931121 Msa0460510:three_prime_UTR
GCTTCCTATGGCGGAGATGA+TGG 0.507003 3_3:-57929088 None:intergenic
CACCTCACGTGCAGACTCGT+TGG 0.508185 3_3:-57929234 None:intergenic
TTGTTGATCTTCACATTGGG+TGG 0.508424 3_3:+57930627 Msa0460510:CDS
TTATCTATAAGTGGTTCCAA+TGG 0.509254 3_3:+57930527 Msa0460510:CDS
GACGTCGGGAAGCGCGGTGA+CGG 0.509701 3_3:-57930390 None:intergenic
TCCGCCACATCAAGAGCTGC+CGG 0.512954 3_3:-57929303 None:intergenic
AGCTTCTTGAGGGAGCTTGT+TGG 0.517538 3_3:-57930678 None:intergenic
TGGCGATGGTGGCACAGCCT+AGG 0.518030 3_3:-57929029 None:intergenic
GGTCCACTTACAAATTGAAC+GGG 0.518152 3_3:-57929456 None:intergenic
GGCCGCGTTTCGTGTGACGT+CGG 0.518232 3_3:-57930405 None:intergenic
CTTAAGATGCATAGACCCAT+TGG 0.520577 3_3:-57930543 None:intergenic
CCATAGATTCTTACACTGGC+TGG 0.521540 3_3:-57929156 None:intergenic
GTATGTGGTTGCATCACCCT+AGG 0.522961 3_3:+57929382 Msa0460510:CDS
AAGCCAGAGTTGGATGCTCT+TGG 0.523659 3_3:+57930296 Msa0460510:CDS
GCACCAAGAGCATCCAACTC+TGG 0.523813 3_3:-57930299 None:intergenic
ACAATATATAGATATGTATC+CGG 0.524200 3_3:+57930880 Msa0460510:three_prime_UTR
ATCCATAAACTGCACACCAT+TGG 0.527926 3_3:-57929355 None:intergenic
AGTTTATGGATGGTTGTATG+TGG 0.530031 3_3:+57929367 Msa0460510:CDS
TGGTGCATCCTTATGGGCAA+AGG 0.534190 3_3:+57930349 Msa0460510:CDS
GTGCCCTTGGTGACTTAGCA+TGG 0.534689 3_3:+57930318 Msa0460510:CDS
TTTGGATCCAAACACACACT+TGG 0.535582 3_3:-57930922 None:intergenic
AAACCTGTTTCCTTATAGCT+AGG 0.537230 3_3:+57930839 Msa0460510:exon
TATGGCGGAGATGATGGCGT+TGG 0.538344 3_3:-57929082 None:intergenic
CATTAGAGTAAAGCCAGAGT+TGG 0.540850 3_3:+57930286 Msa0460510:CDS
TATCTATAAGTGGTTCCAAT+GGG 0.541220 3_3:+57930528 Msa0460510:CDS
GCCGGCAGCTCTTGATGTGG+CGG 0.542894 3_3:+57929302 Msa0460510:CDS
GTCGGGAAGCGCGGTGACGG+TGG 0.543015 3_3:-57930387 None:intergenic
AACGAGTCTGCACGTGAGGT+GGG 0.545992 3_3:+57929236 Msa0460510:CDS
GGTGCATCCTTATGGGCAAA+GGG 0.546980 3_3:+57930350 Msa0460510:CDS
ATAGATAACAATTATGTCCC+TGG 0.547312 3_3:+57931001 Msa0460510:three_prime_UTR
GATCTAGAACCCCTGCAACC+AGG 0.548868 3_3:-57931019 None:intergenic
TCCCAACGAGTCTGCACGTG+AGG 0.549930 3_3:+57929232 Msa0460510:CDS
GACGTCACACGAAACGCGGC+CGG 0.553374 3_3:+57930407 Msa0460510:CDS
TGTATCATCAAAGCTTCTTG+AGG 0.553516 3_3:-57930689 None:intergenic
TCCATGGACTTATCTATAAG+TGG 0.554506 3_3:+57930518 Msa0460510:CDS
AAATTTGTTGATCTTCACAT+TGG 0.555127 3_3:+57930623 Msa0460510:CDS
ACGTGCAGACTCGTTGGGAG+AGG 0.559746 3_3:-57929228 None:intergenic
GACTTAGCATGGTACTGCAT+TGG 0.559827 3_3:+57930329 Msa0460510:CDS
ATTAAGTCGTGCTATACCTC+CGG 0.560720 3_3:-57931075 None:intergenic
GGGAGTGAGAGTAATGGCTC+TGG 0.562162 3_3:-57929061 None:intergenic
AAGCACTAGTCTCCTTGTAT+GGG 0.562955 3_3:-57930577 None:intergenic
TGGTAGCTATGATGAGGTTG+TGG 0.572449 3_3:+57929176 Msa0460510:CDS
AATGGTGTGCAGTTTATGGA+TGG 0.573112 3_3:+57929357 Msa0460510:CDS
TCTAGATCTTAGGTGTAGCA+TGG 0.577597 3_3:+57931034 Msa0460510:three_prime_UTR
TATAGCACGACTTAATGTAC+TGG 0.577856 3_3:+57931082 Msa0460510:three_prime_UTR
TCACCCTAGGACTTTGAACA+TGG 0.579802 3_3:+57929395 Msa0460510:CDS
AATTATGTCCCTGGTTGCAG+GGG 0.582368 3_3:+57931010 Msa0460510:three_prime_UTR
GAGTAAGAAGAAGCATGTGC+TGG 0.587416 3_3:+57929272 Msa0460510:CDS
TCGTGTGACGTCGGGAAGCG+CGG 0.588189 3_3:-57930396 None:intergenic
GTACTCAATATATATTTCTG+TGG 0.588609 3_3:-57930969 None:intergenic
GGGTCCACTTACAAATTGAA+CGG 0.596830 3_3:-57929457 None:intergenic
AACGCCATCATCTCCGCCAT+AGG 0.597780 3_3:+57929084 Msa0460510:CDS
GGACTTCATAATCCCATACA+AGG 0.597873 3_3:+57930565 Msa0460510:CDS
TAAGAAGAAGCATGTGCTGG+TGG 0.600324 3_3:+57929275 Msa0460510:CDS
TCCCGACGTCACACGAAACG+CGG 0.601248 3_3:+57930403 Msa0460510:CDS
TTAGAAGCTTGTGAGGCCAA+TGG 0.602079 3_3:+57929339 Msa0460510:CDS
AGGAAGCCGCTCCATATCAA+AGG 0.605041 3_3:+57929104 Msa0460510:CDS
TGTCTTTGAGTGCTCAACAA+CGG 0.608693 3_3:-57931156 Msa0460520:CDS
TTTGATCTTAGAAGCTTGTG+AGG 0.608724 3_3:+57929332 Msa0460510:CDS
GAAGCCGGCAGCTCTTGATG+TGG 0.611028 3_3:+57929299 Msa0460510:CDS
GCTACCATAGATTCTTACAC+TGG 0.617062 3_3:-57929160 None:intergenic
GTTCCATGTTCAAAGTCCTA+GGG 0.618905 3_3:-57929398 None:intergenic
TTGATGCCTTTGATATGGAG+CGG 0.624795 3_3:-57929110 None:intergenic
ACCACTTATAGATAAGTCCA+TGG 0.629957 3_3:-57930519 None:intergenic
CACATGCTTCTTCTTACTCG+CGG 0.630145 3_3:-57929268 None:intergenic
TGTGATTGATAATATGACTC+CGG 0.634032 3_3:-57930426 None:intergenic
TATGGAGCGGCTTCCTATGG+CGG 0.636562 3_3:-57929097 None:intergenic
AATCTATGGTAGCTATGATG+AGG 0.644571 3_3:+57929170 Msa0460510:CDS
TTGAACGGGTCCAATACCAT+CGG 0.652449 3_3:-57929442 None:intergenic
GAGTCTGCACGTGAGGTGGG+CGG 0.653603 3_3:+57929239 Msa0460510:CDS
TAGCTATGATGAGGTTGTGG+AGG 0.660081 3_3:+57929179 Msa0460510:CDS
GGTTGTGGAGGATTCAGGTG+TGG 0.667223 3_3:+57929191 Msa0460510:CDS
AGTACCATGCTAAGTCACCA+AGG 0.689002 3_3:-57930322 None:intergenic
GTACCATGCTAAGTCACCAA+GGG 0.692891 3_3:-57930321 None:intergenic
GGCGTTGGGAGTGAGAGTAA+TGG 0.702980 3_3:-57929067 None:intergenic
TGGGTGGAATGTGAGACCAG+AGG 0.750850 3_3:+57930643 Msa0460510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAGATATAATGAAATA+GGG - chr3_3:57929481-57929500 None:intergenic 10.0%
!! TATATAAGATATAATGAAAT+AGG - chr3_3:57929482-57929501 None:intergenic 10.0%
!! TGAACTAAAAAAAAATATTT+AGG + chr3_3:57929980-57929999 Msa0460510:intron 10.0%
!! AAAAAAATATTTAGGAAATT+TGG + chr3_3:57929988-57930007 Msa0460510:intron 10.0%
!!! TTATTTTATCAAATTTTATC+CGG - chr3_3:57930902-57930921 None:intergenic 10.0%
!! ATATAAGATATAATGAAATA+GGG - chr3_3:57929481-57929500 None:intergenic 10.0%
!! TATATAAGATATAATGAAAT+AGG - chr3_3:57929482-57929501 None:intergenic 10.0%
!! TGAACTAAAAAAAAATATTT+AGG + chr3_3:57929980-57929999 Msa0460510:intron 10.0%
!! AAAAAAATATTTAGGAAATT+TGG + chr3_3:57929988-57930007 Msa0460510:intron 10.0%
!!! TTATTTTATCAAATTTTATC+CGG - chr3_3:57930902-57930921 None:intergenic 10.0%
!! TATAAGATATAATGAAATAG+GGG - chr3_3:57929480-57929499 None:intergenic 15.0%
!!! AAACTCTAAATTTGTTTATA+AGG + chr3_3:57929515-57929534 Msa0460510:intron 15.0%
!!! TTTTTTTGAAAGATATTAGT+TGG - chr3_3:57929920-57929939 None:intergenic 15.0%
!! TATAAGATATAATGAAATAG+GGG - chr3_3:57929480-57929499 None:intergenic 15.0%
!!! AAACTCTAAATTTGTTTATA+AGG + chr3_3:57929515-57929534 Msa0460510:intron 15.0%
!!! TTTTTTTGAAAGATATTAGT+TGG - chr3_3:57929920-57929939 None:intergenic 15.0%
!! TACAAGTATTTAGGTAAATT+TGG + chr3_3:57929562-57929581 Msa0460510:intron 20.0%
!!! ATTTAGGTAAATTTGGAATA+TGG + chr3_3:57929569-57929588 Msa0460510:intron 20.0%
!!! CAATGTTTAAATTTTGACAA+AGG + chr3_3:57929677-57929696 Msa0460510:intron 20.0%
!! CATACTAACAATTTAAATCT+TGG + chr3_3:57929725-57929744 Msa0460510:intron 20.0%
!! GAAATTTGGATATAAAATTG+AGG + chr3_3:57930002-57930021 Msa0460510:intron 20.0%
!! ACAATATATAGATATGTATC+CGG + chr3_3:57930880-57930899 Msa0460510:three_prime_UTR 20.0%
!! TATTAGAATGATGATACAAA+CGG + chr3_3:57931121-57931140 Msa0460510:three_prime_UTR 20.0%
!! TACAAGTATTTAGGTAAATT+TGG + chr3_3:57929562-57929581 Msa0460510:intron 20.0%
!!! ATTTAGGTAAATTTGGAATA+TGG + chr3_3:57929569-57929588 Msa0460510:intron 20.0%
!!! CAATGTTTAAATTTTGACAA+AGG + chr3_3:57929677-57929696 Msa0460510:intron 20.0%
!! CATACTAACAATTTAAATCT+TGG + chr3_3:57929725-57929744 Msa0460510:intron 20.0%
!! GAAATTTGGATATAAAATTG+AGG + chr3_3:57930002-57930021 Msa0460510:intron 20.0%
!! ACAATATATAGATATGTATC+CGG + chr3_3:57930880-57930899 Msa0460510:three_prime_UTR 20.0%
!! TATTAGAATGATGATACAAA+CGG + chr3_3:57931121-57931140 Msa0460510:three_prime_UTR 20.0%
!!! AAATTTTGATGCCTTTGATA+TGG - chr3_3:57929118-57929137 None:intergenic 25.0%
! CTAACAATTTAAATCTTGGT+AGG + chr3_3:57929729-57929748 Msa0460510:intron 25.0%
! TAATATTATTCGAGACATGA+CGG - chr3_3:57929777-57929796 None:intergenic 25.0%
! GAAAAAAAAAAACAGTTTGG+TGG + chr3_3:57929821-57929840 Msa0460510:intron 25.0%
! ATATTTGCAACTGTTTGATT+TGG - chr3_3:57930473-57930492 None:intergenic 25.0%
!!! AAATTTGTTGATCTTCACAT+TGG + chr3_3:57930623-57930642 Msa0460510:CDS 25.0%
!!! AATTTGTTGATCTTCACATT+GGG + chr3_3:57930624-57930643 Msa0460510:CDS 25.0%
! TTGCAAGTATTAGAGATTAT+GGG + chr3_3:57930729-57930748 Msa0460510:CDS 25.0%
! AATTAGTAGAAAGACTCAAT+TGG + chr3_3:57930778-57930797 Msa0460510:CDS 25.0%
!! TGATTTTGTCAAACTAACTT+TGG - chr3_3:57930943-57930962 None:intergenic 25.0%
!! GTACTCAATATATATTTCTG+TGG - chr3_3:57930972-57930991 None:intergenic 25.0%
!!! AAATTTTGATGCCTTTGATA+TGG - chr3_3:57929118-57929137 None:intergenic 25.0%
! CTAACAATTTAAATCTTGGT+AGG + chr3_3:57929729-57929748 Msa0460510:intron 25.0%
! TAATATTATTCGAGACATGA+CGG - chr3_3:57929777-57929796 None:intergenic 25.0%
! GAAAAAAAAAAACAGTTTGG+TGG + chr3_3:57929821-57929840 Msa0460510:intron 25.0%
! ATATTTGCAACTGTTTGATT+TGG - chr3_3:57930473-57930492 None:intergenic 25.0%
!!! AAATTTGTTGATCTTCACAT+TGG + chr3_3:57930623-57930642 Msa0460510:CDS 25.0%
!!! AATTTGTTGATCTTCACATT+GGG + chr3_3:57930624-57930643 Msa0460510:CDS 25.0%
! TTGCAAGTATTAGAGATTAT+GGG + chr3_3:57930729-57930748 Msa0460510:CDS 25.0%
! AATTAGTAGAAAGACTCAAT+TGG + chr3_3:57930778-57930797 Msa0460510:CDS 25.0%
!! TGATTTTGTCAAACTAACTT+TGG - chr3_3:57930943-57930962 None:intergenic 25.0%
!! GTACTCAATATATATTTCTG+TGG - chr3_3:57930972-57930991 None:intergenic 25.0%
!! ATCTTTCGCAGTCATTTTAT+GGG - chr3_3:57928992-57929011 None:intergenic 30.0%
!! TATCTTTCGCAGTCATTTTA+TGG - chr3_3:57928993-57929012 None:intergenic 30.0%
CCTAAATACTTGTAGTATAC+TGG - chr3_3:57929556-57929575 None:intergenic 30.0%
CCAGTATACTACAAGTATTT+AGG + chr3_3:57929553-57929572 Msa0460510:intron 30.0%
! GGTAAATTTGGAATATGGAT+CGG + chr3_3:57929574-57929593 Msa0460510:intron 30.0%
! GTAAATTTGGAATATGGATC+GGG + chr3_3:57929575-57929594 Msa0460510:intron 30.0%
TACATCAAGTGAAAGAGATT+AGG + chr3_3:57929795-57929814 Msa0460510:intron 30.0%
ACATCAAGTGAAAGAGATTA+GGG + chr3_3:57929796-57929815 Msa0460510:intron 30.0%
GGGGAAAAAAAAAAACAGTT+TGG + chr3_3:57929818-57929837 Msa0460510:intron 30.0%
! AAAAAAACAGTTTGGTGGTT+TGG + chr3_3:57929826-57929845 Msa0460510:intron 30.0%
! AAAAAACAGTTTGGTGGTTT+GGG + chr3_3:57929827-57929846 Msa0460510:intron 30.0%
ATAGCTAACAACTATCATTG+AGG + chr3_3:57930046-57930065 Msa0460510:intron 30.0%
! TGTGATTGATAATATGACTC+CGG - chr3_3:57930429-57930448 None:intergenic 30.0%
AATCACATCTTCTTTGCAAT+GGG + chr3_3:57930442-57930461 Msa0460510:CDS 30.0%
TTATCTATAAGTGGTTCCAA+TGG + chr3_3:57930527-57930546 Msa0460510:CDS 30.0%
TATCTATAAGTGGTTCCAAT+GGG + chr3_3:57930528-57930547 Msa0460510:CDS 30.0%
GTTGCAAGTATTAGAGATTA+TGG + chr3_3:57930728-57930747 Msa0460510:CDS 30.0%
TGAGTCTTTCTACTAATTTC+TGG - chr3_3:57930776-57930795 None:intergenic 30.0%
TTGTAAACTACCTAGCTATA+AGG - chr3_3:57930852-57930871 None:intergenic 30.0%
AAAATAACCAAGTGTGTGTT+TGG + chr3_3:57930915-57930934 Msa0460510:three_prime_UTR 30.0%
ATAGATAACAATTATGTCCC+TGG + chr3_3:57931001-57931020 Msa0460510:three_prime_UTR 30.0%
!! ATCTTTCGCAGTCATTTTAT+GGG - chr3_3:57928992-57929011 None:intergenic 30.0%
!! TATCTTTCGCAGTCATTTTA+TGG - chr3_3:57928993-57929012 None:intergenic 30.0%
CCTAAATACTTGTAGTATAC+TGG - chr3_3:57929556-57929575 None:intergenic 30.0%
CCAGTATACTACAAGTATTT+AGG + chr3_3:57929553-57929572 Msa0460510:intron 30.0%
! GGTAAATTTGGAATATGGAT+CGG + chr3_3:57929574-57929593 Msa0460510:intron 30.0%
! GTAAATTTGGAATATGGATC+GGG + chr3_3:57929575-57929594 Msa0460510:intron 30.0%
TACATCAAGTGAAAGAGATT+AGG + chr3_3:57929795-57929814 Msa0460510:intron 30.0%
ACATCAAGTGAAAGAGATTA+GGG + chr3_3:57929796-57929815 Msa0460510:intron 30.0%
GGGGAAAAAAAAAAACAGTT+TGG + chr3_3:57929818-57929837 Msa0460510:intron 30.0%
! AAAAAAACAGTTTGGTGGTT+TGG + chr3_3:57929826-57929845 Msa0460510:intron 30.0%
! AAAAAACAGTTTGGTGGTTT+GGG + chr3_3:57929827-57929846 Msa0460510:intron 30.0%
ATAGCTAACAACTATCATTG+AGG + chr3_3:57930046-57930065 Msa0460510:intron 30.0%
! TGTGATTGATAATATGACTC+CGG - chr3_3:57930429-57930448 None:intergenic 30.0%
AATCACATCTTCTTTGCAAT+GGG + chr3_3:57930442-57930461 Msa0460510:CDS 30.0%
TTATCTATAAGTGGTTCCAA+TGG + chr3_3:57930527-57930546 Msa0460510:CDS 30.0%
TATCTATAAGTGGTTCCAAT+GGG + chr3_3:57930528-57930547 Msa0460510:CDS 30.0%
GTTGCAAGTATTAGAGATTA+TGG + chr3_3:57930728-57930747 Msa0460510:CDS 30.0%
TGAGTCTTTCTACTAATTTC+TGG - chr3_3:57930776-57930795 None:intergenic 30.0%
TTGTAAACTACCTAGCTATA+AGG - chr3_3:57930852-57930871 None:intergenic 30.0%
AAAATAACCAAGTGTGTGTT+TGG + chr3_3:57930915-57930934 Msa0460510:three_prime_UTR 30.0%
ATAGATAACAATTATGTCCC+TGG + chr3_3:57931001-57931020 Msa0460510:three_prime_UTR 30.0%
AATCTATGGTAGCTATGATG+AGG + chr3_3:57929170-57929189 Msa0460510:CDS 35.0%
TTTGATCTTAGAAGCTTGTG+AGG + chr3_3:57929332-57929351 Msa0460510:CDS 35.0%
AGTTTATGGATGGTTGTATG+TGG + chr3_3:57929367-57929386 Msa0460510:CDS 35.0%
CTTGATCTTTCTAATTCCGA+TGG + chr3_3:57929426-57929445 Msa0460510:CDS 35.0%
CTTTCTAATTCCGATGGTAT+TGG + chr3_3:57929432-57929451 Msa0460510:CDS 35.0%
CATCAAGTGAAAGAGATTAG+GGG + chr3_3:57929797-57929816 Msa0460510:intron 35.0%
ATCAAGTGAAAGAGATTAGG+GGG + chr3_3:57929798-57929817 Msa0460510:intron 35.0%
! AAAAACAGTTTGGTGGTTTG+GGG + chr3_3:57929828-57929847 Msa0460510:intron 35.0%
! TCCAAGAATTCTTGAGTTGT+TGG - chr3_3:57930260-57930279 None:intergenic 35.0%
CAATCACATCTTCTTTGCAA+TGG + chr3_3:57930441-57930460 Msa0460510:CDS 35.0%
!! TTGCAACTGTTTGATTTGGT+TGG - chr3_3:57930469-57930488 None:intergenic 35.0%
TCCATGGACTTATCTATAAG+TGG + chr3_3:57930518-57930537 Msa0460510:CDS 35.0%
ACCACTTATAGATAAGTCCA+TGG - chr3_3:57930522-57930541 None:intergenic 35.0%
! GCTTCATTTGACTTCACATT+TGG + chr3_3:57930596-57930615 Msa0460510:CDS 35.0%
GTATCATCAAAGCTTCTTGA+GGG - chr3_3:57930691-57930710 None:intergenic 35.0%
TGTATCATCAAAGCTTCTTG+AGG - chr3_3:57930692-57930711 None:intergenic 35.0%
! TGATGATACAAGAGTTTGCT+AGG + chr3_3:57930702-57930721 Msa0460510:CDS 35.0%
!!! ATTTCTGGCCATTTTGTAGA+AGG - chr3_3:57930761-57930780 None:intergenic 35.0%
!! GTGAAAAAGTCTTTAGAGCT+TGG + chr3_3:57930812-57930831 Msa0460510:CDS 35.0%
AAACCTGTTTCCTTATAGCT+AGG + chr3_3:57930839-57930858 Msa0460510:exon 35.0%
! GCATGGCCTTTTCTTTTTTT+CGG + chr3_3:57931051-57931070 Msa0460510:three_prime_UTR 35.0%
TATAGCACGACTTAATGTAC+TGG + chr3_3:57931082-57931101 Msa0460510:three_prime_UTR 35.0%
AATCTATGGTAGCTATGATG+AGG + chr3_3:57929170-57929189 Msa0460510:CDS 35.0%
TTTGATCTTAGAAGCTTGTG+AGG + chr3_3:57929332-57929351 Msa0460510:CDS 35.0%
AGTTTATGGATGGTTGTATG+TGG + chr3_3:57929367-57929386 Msa0460510:CDS 35.0%
CTTGATCTTTCTAATTCCGA+TGG + chr3_3:57929426-57929445 Msa0460510:CDS 35.0%
CTTTCTAATTCCGATGGTAT+TGG + chr3_3:57929432-57929451 Msa0460510:CDS 35.0%
CATCAAGTGAAAGAGATTAG+GGG + chr3_3:57929797-57929816 Msa0460510:intron 35.0%
ATCAAGTGAAAGAGATTAGG+GGG + chr3_3:57929798-57929817 Msa0460510:intron 35.0%
! AAAAACAGTTTGGTGGTTTG+GGG + chr3_3:57929828-57929847 Msa0460510:intron 35.0%
! TCCAAGAATTCTTGAGTTGT+TGG - chr3_3:57930260-57930279 None:intergenic 35.0%
CAATCACATCTTCTTTGCAA+TGG + chr3_3:57930441-57930460 Msa0460510:CDS 35.0%
!! TTGCAACTGTTTGATTTGGT+TGG - chr3_3:57930469-57930488 None:intergenic 35.0%
TCCATGGACTTATCTATAAG+TGG + chr3_3:57930518-57930537 Msa0460510:CDS 35.0%
ACCACTTATAGATAAGTCCA+TGG - chr3_3:57930522-57930541 None:intergenic 35.0%
! GCTTCATTTGACTTCACATT+TGG + chr3_3:57930596-57930615 Msa0460510:CDS 35.0%
GTATCATCAAAGCTTCTTGA+GGG - chr3_3:57930691-57930710 None:intergenic 35.0%
TGTATCATCAAAGCTTCTTG+AGG - chr3_3:57930692-57930711 None:intergenic 35.0%
! TGATGATACAAGAGTTTGCT+AGG + chr3_3:57930702-57930721 Msa0460510:CDS 35.0%
!!! ATTTCTGGCCATTTTGTAGA+AGG - chr3_3:57930761-57930780 None:intergenic 35.0%
!! GTGAAAAAGTCTTTAGAGCT+TGG + chr3_3:57930812-57930831 Msa0460510:CDS 35.0%
AAACCTGTTTCCTTATAGCT+AGG + chr3_3:57930839-57930858 Msa0460510:exon 35.0%
! GCATGGCCTTTTCTTTTTTT+CGG + chr3_3:57931051-57931070 Msa0460510:three_prime_UTR 35.0%
TATAGCACGACTTAATGTAC+TGG + chr3_3:57931082-57931101 Msa0460510:three_prime_UTR 35.0%
TTGATGCCTTTGATATGGAG+CGG - chr3_3:57929113-57929132 None:intergenic 40.0%
GCTACCATAGATTCTTACAC+TGG - chr3_3:57929163-57929182 None:intergenic 40.0%
ATCCATAAACTGCACACCAT+TGG - chr3_3:57929358-57929377 None:intergenic 40.0%
AATGGTGTGCAGTTTATGGA+TGG + chr3_3:57929357-57929376 Msa0460510:CDS 40.0%
GTTCCATGTTCAAAGTCCTA+GGG - chr3_3:57929401-57929420 None:intergenic 40.0%
TGTTCCATGTTCAAAGTCCT+AGG - chr3_3:57929402-57929421 None:intergenic 40.0%
GGTCCACTTACAAATTGAAC+GGG - chr3_3:57929459-57929478 None:intergenic 40.0%
GGGTCCACTTACAAATTGAA+CGG - chr3_3:57929460-57929479 None:intergenic 40.0%
TCAAGTGAAAGAGATTAGGG+GGG + chr3_3:57929799-57929818 Msa0460510:intron 40.0%
! AAAACAGTTTGGTGGTTTGG+GGG + chr3_3:57929829-57929848 Msa0460510:intron 40.0%
TGGGGGAATAACATAAGAGT+TGG + chr3_3:57929846-57929865 Msa0460510:intron 40.0%
TTGGCATTGTTGATGTGCTA+TGG - chr3_3:57930241-57930260 None:intergenic 40.0%
GCCAACAACTCAAGAATTCT+TGG + chr3_3:57930256-57930275 Msa0460510:CDS 40.0%
CATTAGAGTAAAGCCAGAGT+TGG + chr3_3:57930286-57930305 Msa0460510:CDS 40.0%
ATTTCTTTCTCACACGTCCA+TGG + chr3_3:57930502-57930521 Msa0460510:CDS 40.0%
CTTAAGATGCATAGACCCAT+TGG - chr3_3:57930546-57930565 None:intergenic 40.0%
CAATGGGTCTATGCATCTTA+AGG + chr3_3:57930544-57930563 Msa0460510:CDS 40.0%
GGACTTCATAATCCCATACA+AGG + chr3_3:57930565-57930584 Msa0460510:CDS 40.0%
! AAGCACTAGTCTCCTTGTAT+GGG - chr3_3:57930580-57930599 None:intergenic 40.0%
TTGTTGATCTTCACATTGGG+TGG + chr3_3:57930627-57930646 Msa0460510:CDS 40.0%
CTACCTAGCTATAAGGAAAC+AGG - chr3_3:57930845-57930864 None:intergenic 40.0%
TTTGGATCCAAACACACACT+TGG - chr3_3:57930925-57930944 None:intergenic 40.0%
TCTAGATCTTAGGTGTAGCA+TGG + chr3_3:57931034-57931053 Msa0460510:three_prime_UTR 40.0%
!!! GCCTTTTCTTTTTTTCGGAC+CGG + chr3_3:57931056-57931075 Msa0460510:three_prime_UTR 40.0%
TCCGGTCCGAAAAAAAGAAA+AGG - chr3_3:57931060-57931079 None:intergenic 40.0%
!!! TTTTCTTTTTTTCGGACCGG+AGG + chr3_3:57931059-57931078 Msa0460510:three_prime_UTR 40.0%
ATTAAGTCGTGCTATACCTC+CGG - chr3_3:57931078-57931097 None:intergenic 40.0%
TTGATGCCTTTGATATGGAG+CGG - chr3_3:57929113-57929132 None:intergenic 40.0%
GCTACCATAGATTCTTACAC+TGG - chr3_3:57929163-57929182 None:intergenic 40.0%
ATCCATAAACTGCACACCAT+TGG - chr3_3:57929358-57929377 None:intergenic 40.0%
AATGGTGTGCAGTTTATGGA+TGG + chr3_3:57929357-57929376 Msa0460510:CDS 40.0%
GTTCCATGTTCAAAGTCCTA+GGG - chr3_3:57929401-57929420 None:intergenic 40.0%
TGTTCCATGTTCAAAGTCCT+AGG - chr3_3:57929402-57929421 None:intergenic 40.0%
GGTCCACTTACAAATTGAAC+GGG - chr3_3:57929459-57929478 None:intergenic 40.0%
GGGTCCACTTACAAATTGAA+CGG - chr3_3:57929460-57929479 None:intergenic 40.0%
TCAAGTGAAAGAGATTAGGG+GGG + chr3_3:57929799-57929818 Msa0460510:intron 40.0%
! AAAACAGTTTGGTGGTTTGG+GGG + chr3_3:57929829-57929848 Msa0460510:intron 40.0%
TGGGGGAATAACATAAGAGT+TGG + chr3_3:57929846-57929865 Msa0460510:intron 40.0%
TTGGCATTGTTGATGTGCTA+TGG - chr3_3:57930241-57930260 None:intergenic 40.0%
GCCAACAACTCAAGAATTCT+TGG + chr3_3:57930256-57930275 Msa0460510:CDS 40.0%
CATTAGAGTAAAGCCAGAGT+TGG + chr3_3:57930286-57930305 Msa0460510:CDS 40.0%
ATTTCTTTCTCACACGTCCA+TGG + chr3_3:57930502-57930521 Msa0460510:CDS 40.0%
CTTAAGATGCATAGACCCAT+TGG - chr3_3:57930546-57930565 None:intergenic 40.0%
CAATGGGTCTATGCATCTTA+AGG + chr3_3:57930544-57930563 Msa0460510:CDS 40.0%
GGACTTCATAATCCCATACA+AGG + chr3_3:57930565-57930584 Msa0460510:CDS 40.0%
! AAGCACTAGTCTCCTTGTAT+GGG - chr3_3:57930580-57930599 None:intergenic 40.0%
TTGTTGATCTTCACATTGGG+TGG + chr3_3:57930627-57930646 Msa0460510:CDS 40.0%
CTACCTAGCTATAAGGAAAC+AGG - chr3_3:57930845-57930864 None:intergenic 40.0%
TTTGGATCCAAACACACACT+TGG - chr3_3:57930925-57930944 None:intergenic 40.0%
TCTAGATCTTAGGTGTAGCA+TGG + chr3_3:57931034-57931053 Msa0460510:three_prime_UTR 40.0%
!!! GCCTTTTCTTTTTTTCGGAC+CGG + chr3_3:57931056-57931075 Msa0460510:three_prime_UTR 40.0%
TCCGGTCCGAAAAAAAGAAA+AGG - chr3_3:57931060-57931079 None:intergenic 40.0%
!!! TTTTCTTTTTTTCGGACCGG+AGG + chr3_3:57931059-57931078 Msa0460510:three_prime_UTR 40.0%
ATTAAGTCGTGCTATACCTC+CGG - chr3_3:57931078-57931097 None:intergenic 40.0%
! GCGAAAGATACAGTGCGTTT+TGG + chr3_3:57929003-57929022 Msa0460510:CDS 45.0%
!!! AATGGCTCTGGCTAGTTTTC+TGG - chr3_3:57929052-57929071 None:intergenic 45.0%
! GGCTGGTAAACTGTTTTCGA+CGG - chr3_3:57929142-57929161 None:intergenic 45.0%
CCATAGATTCTTACACTGGC+TGG - chr3_3:57929159-57929178 None:intergenic 45.0%
CCAGCCAGTGTAAGAATCTA+TGG + chr3_3:57929156-57929175 Msa0460510:CDS 45.0%
TGGTAGCTATGATGAGGTTG+TGG + chr3_3:57929176-57929195 Msa0460510:CDS 45.0%
TAGCTATGATGAGGTTGTGG+AGG + chr3_3:57929179-57929198 Msa0460510:CDS 45.0%
CACATGCTTCTTCTTACTCG+CGG - chr3_3:57929271-57929290 None:intergenic 45.0%
! GAGTAAGAAGAAGCATGTGC+TGG + chr3_3:57929272-57929291 Msa0460510:CDS 45.0%
! TAAGAAGAAGCATGTGCTGG+TGG + chr3_3:57929275-57929294 Msa0460510:CDS 45.0%
TTAGAAGCTTGTGAGGCCAA+TGG + chr3_3:57929339-57929358 Msa0460510:CDS 45.0%
TCACCCTAGGACTTTGAACA+TGG + chr3_3:57929395-57929414 Msa0460510:CDS 45.0%
TTGAACGGGTCCAATACCAT+CGG - chr3_3:57929445-57929464 None:intergenic 45.0%
GGACCCGTTCAATTTGTAAG+TGG + chr3_3:57929453-57929472 Msa0460510:intron 45.0%
AAAACTAGACCCCAACAACG+TGG + chr3_3:57929609-57929628 Msa0460510:intron 45.0%
CGATGCTGACAAGGGATTAA+AGG + chr3_3:57929636-57929655 Msa0460510:intron 45.0%
GTACCATGCTAAGTCACCAA+GGG - chr3_3:57930324-57930343 None:intergenic 45.0%
AGTACCATGCTAAGTCACCA+AGG - chr3_3:57930325-57930344 None:intergenic 45.0%
GACTTAGCATGGTACTGCAT+TGG + chr3_3:57930329-57930348 Msa0460510:CDS 45.0%
! ACTGCATTGGTGCATCCTTA+TGG + chr3_3:57930342-57930361 Msa0460510:CDS 45.0%
! CTGCATTGGTGCATCCTTAT+GGG + chr3_3:57930343-57930362 Msa0460510:CDS 45.0%
! GAAGCACTAGTCTCCTTGTA+TGG - chr3_3:57930581-57930600 None:intergenic 45.0%
TTGGCAACATGAACTTCCTC+TGG - chr3_3:57930662-57930681 None:intergenic 45.0%
GGTCTCAGCCTTCTACAAAA+TGG + chr3_3:57930750-57930769 Msa0460510:CDS 45.0%
ACAATTATGTCCCTGGTTGC+AGG + chr3_3:57931008-57931027 Msa0460510:three_prime_UTR 45.0%
CAATTATGTCCCTGGTTGCA+GGG + chr3_3:57931009-57931028 Msa0460510:three_prime_UTR 45.0%
AATTATGTCCCTGGTTGCAG+GGG + chr3_3:57931010-57931029 Msa0460510:three_prime_UTR 45.0%
!! TTGCAGGGGTTCTAGATCTT+AGG + chr3_3:57931024-57931043 Msa0460510:three_prime_UTR 45.0%
! GCGAAAGATACAGTGCGTTT+TGG + chr3_3:57929003-57929022 Msa0460510:CDS 45.0%
!!! AATGGCTCTGGCTAGTTTTC+TGG - chr3_3:57929052-57929071 None:intergenic 45.0%
! GGCTGGTAAACTGTTTTCGA+CGG - chr3_3:57929142-57929161 None:intergenic 45.0%
CCATAGATTCTTACACTGGC+TGG - chr3_3:57929159-57929178 None:intergenic 45.0%
CCAGCCAGTGTAAGAATCTA+TGG + chr3_3:57929156-57929175 Msa0460510:CDS 45.0%
TGGTAGCTATGATGAGGTTG+TGG + chr3_3:57929176-57929195 Msa0460510:CDS 45.0%
TAGCTATGATGAGGTTGTGG+AGG + chr3_3:57929179-57929198 Msa0460510:CDS 45.0%
CACATGCTTCTTCTTACTCG+CGG - chr3_3:57929271-57929290 None:intergenic 45.0%
! GAGTAAGAAGAAGCATGTGC+TGG + chr3_3:57929272-57929291 Msa0460510:CDS 45.0%
! TAAGAAGAAGCATGTGCTGG+TGG + chr3_3:57929275-57929294 Msa0460510:CDS 45.0%
TTAGAAGCTTGTGAGGCCAA+TGG + chr3_3:57929339-57929358 Msa0460510:CDS 45.0%
TCACCCTAGGACTTTGAACA+TGG + chr3_3:57929395-57929414 Msa0460510:CDS 45.0%
TTGAACGGGTCCAATACCAT+CGG - chr3_3:57929445-57929464 None:intergenic 45.0%
GGACCCGTTCAATTTGTAAG+TGG + chr3_3:57929453-57929472 Msa0460510:intron 45.0%
AAAACTAGACCCCAACAACG+TGG + chr3_3:57929609-57929628 Msa0460510:intron 45.0%
CGATGCTGACAAGGGATTAA+AGG + chr3_3:57929636-57929655 Msa0460510:intron 45.0%
GTACCATGCTAAGTCACCAA+GGG - chr3_3:57930324-57930343 None:intergenic 45.0%
AGTACCATGCTAAGTCACCA+AGG - chr3_3:57930325-57930344 None:intergenic 45.0%
GACTTAGCATGGTACTGCAT+TGG + chr3_3:57930329-57930348 Msa0460510:CDS 45.0%
! ACTGCATTGGTGCATCCTTA+TGG + chr3_3:57930342-57930361 Msa0460510:CDS 45.0%
! CTGCATTGGTGCATCCTTAT+GGG + chr3_3:57930343-57930362 Msa0460510:CDS 45.0%
! GAAGCACTAGTCTCCTTGTA+TGG - chr3_3:57930581-57930600 None:intergenic 45.0%
TTGGCAACATGAACTTCCTC+TGG - chr3_3:57930662-57930681 None:intergenic 45.0%
GGTCTCAGCCTTCTACAAAA+TGG + chr3_3:57930750-57930769 Msa0460510:CDS 45.0%
ACAATTATGTCCCTGGTTGC+AGG + chr3_3:57931008-57931027 Msa0460510:three_prime_UTR 45.0%
CAATTATGTCCCTGGTTGCA+GGG + chr3_3:57931009-57931028 Msa0460510:three_prime_UTR 45.0%
AATTATGTCCCTGGTTGCAG+GGG + chr3_3:57931010-57931029 Msa0460510:three_prime_UTR 45.0%
!! TTGCAGGGGTTCTAGATCTT+AGG + chr3_3:57931024-57931043 Msa0460510:three_prime_UTR 45.0%
!! TAAAAAAAAAAAATATTAGT+TGG - chr3_3:57929952-57929971 None:intergenic 5.0%
!! TAAAAAAAAAAAATATTAGT+TGG - chr3_3:57929952-57929971 None:intergenic 5.0%
!! ACAGTGCGTTTTGGCATCCT+AGG + chr3_3:57929012-57929031 Msa0460510:CDS 50.0%
!!! TCTGGCTAGTTTTCTGGCGA+TGG - chr3_3:57929046-57929065 None:intergenic 50.0%
TGATATGGAGCGGCTTCCTA+TGG - chr3_3:57929103-57929122 None:intergenic 50.0%
AGGAAGCCGCTCCATATCAA+AGG + chr3_3:57929104-57929123 Msa0460510:CDS 50.0%
GATGAGGTTGTGGAGGATTC+AGG + chr3_3:57929186-57929205 Msa0460510:CDS 50.0%
GGCCAATGGTGTGCAGTTTA+TGG + chr3_3:57929353-57929372 Msa0460510:CDS 50.0%
GTATGTGGTTGCATCACCCT+AGG + chr3_3:57929382-57929401 Msa0460510:CDS 50.0%
CATCGTTTGCCACGTTGTTG+GGG - chr3_3:57929621-57929640 None:intergenic 50.0%
GCATCGTTTGCCACGTTGTT+GGG - chr3_3:57929622-57929641 None:intergenic 50.0%
AGCATCGTTTGCCACGTTGT+TGG - chr3_3:57929623-57929642 None:intergenic 50.0%
GTGGCAAACGATGCTGACAA+GGG + chr3_3:57929628-57929647 Msa0460510:intron 50.0%
TCATTGAGGTCTAGCGCAAG+TGG + chr3_3:57930060-57930079 Msa0460510:intron 50.0%
AAGCCAGAGTTGGATGCTCT+TGG + chr3_3:57930296-57930315 Msa0460510:CDS 50.0%
TGGTGCATCCTTATGGGCAA+AGG + chr3_3:57930349-57930368 Msa0460510:CDS 50.0%
GGTGCATCCTTATGGGCAAA+GGG + chr3_3:57930350-57930369 Msa0460510:CDS 50.0%
CTTGTAGCCCTTTGCCCATA+AGG - chr3_3:57930360-57930379 None:intergenic 50.0%
AGCTTCTTGAGGGAGCTTGT+TGG - chr3_3:57930681-57930700 None:intergenic 50.0%
! ATCTAGAACCCCTGCAACCA+GGG - chr3_3:57931021-57931040 None:intergenic 50.0%
!! ACAGTGCGTTTTGGCATCCT+AGG + chr3_3:57929012-57929031 Msa0460510:CDS 50.0%
!!! TCTGGCTAGTTTTCTGGCGA+TGG - chr3_3:57929046-57929065 None:intergenic 50.0%
TGATATGGAGCGGCTTCCTA+TGG - chr3_3:57929103-57929122 None:intergenic 50.0%
AGGAAGCCGCTCCATATCAA+AGG + chr3_3:57929104-57929123 Msa0460510:CDS 50.0%
GATGAGGTTGTGGAGGATTC+AGG + chr3_3:57929186-57929205 Msa0460510:CDS 50.0%
GGCCAATGGTGTGCAGTTTA+TGG + chr3_3:57929353-57929372 Msa0460510:CDS 50.0%
GTATGTGGTTGCATCACCCT+AGG + chr3_3:57929382-57929401 Msa0460510:CDS 50.0%
CATCGTTTGCCACGTTGTTG+GGG - chr3_3:57929621-57929640 None:intergenic 50.0%
GCATCGTTTGCCACGTTGTT+GGG - chr3_3:57929622-57929641 None:intergenic 50.0%
AGCATCGTTTGCCACGTTGT+TGG - chr3_3:57929623-57929642 None:intergenic 50.0%
GTGGCAAACGATGCTGACAA+GGG + chr3_3:57929628-57929647 Msa0460510:intron 50.0%
TCATTGAGGTCTAGCGCAAG+TGG + chr3_3:57930060-57930079 Msa0460510:intron 50.0%
AAGCCAGAGTTGGATGCTCT+TGG + chr3_3:57930296-57930315 Msa0460510:CDS 50.0%
TGGTGCATCCTTATGGGCAA+AGG + chr3_3:57930349-57930368 Msa0460510:CDS 50.0%
GGTGCATCCTTATGGGCAAA+GGG + chr3_3:57930350-57930369 Msa0460510:CDS 50.0%
CTTGTAGCCCTTTGCCCATA+AGG - chr3_3:57930360-57930379 None:intergenic 50.0%
AGCTTCTTGAGGGAGCTTGT+TGG - chr3_3:57930681-57930700 None:intergenic 50.0%
! ATCTAGAACCCCTGCAACCA+GGG - chr3_3:57931021-57931040 None:intergenic 50.0%
!!! GGCTAGTTTTCTGGCGATGG+TGG - chr3_3:57929043-57929062 None:intergenic 55.0%
GGGAGTGAGAGTAATGGCTC+TGG - chr3_3:57929064-57929083 None:intergenic 55.0%
! GGCGTTGGGAGTGAGAGTAA+TGG - chr3_3:57929070-57929089 None:intergenic 55.0%
! ATGGCGGAGATGATGGCGTT+GGG - chr3_3:57929084-57929103 None:intergenic 55.0%
! TATGGCGGAGATGATGGCGT+TGG - chr3_3:57929085-57929104 None:intergenic 55.0%
AACGCCATCATCTCCGCCAT+AGG + chr3_3:57929084-57929103 Msa0460510:CDS 55.0%
! GCTTCCTATGGCGGAGATGA+TGG - chr3_3:57929091-57929110 None:intergenic 55.0%
TATGGAGCGGCTTCCTATGG+CGG - chr3_3:57929100-57929119 None:intergenic 55.0%
GGTTGTGGAGGATTCAGGTG+TGG + chr3_3:57929191-57929210 Msa0460510:CDS 55.0%
ACCTCACGTGCAGACTCGTT+GGG - chr3_3:57929236-57929255 None:intergenic 55.0%
AACGAGTCTGCACGTGAGGT+GGG + chr3_3:57929236-57929255 Msa0460510:CDS 55.0%
CGTGGCAAACGATGCTGACA+AGG + chr3_3:57929627-57929646 Msa0460510:intron 55.0%
!! GCACCAAGAGCATCCAACTC+TGG - chr3_3:57930302-57930321 None:intergenic 55.0%
!! TTGGATGCTCTTGGTGCCCT+TGG + chr3_3:57930305-57930324 Msa0460510:CDS 55.0%
! GTGCCCTTGGTGACTTAGCA+TGG + chr3_3:57930318-57930337 Msa0460510:CDS 55.0%
TGGGTGGAATGTGAGACCAG+AGG + chr3_3:57930643-57930662 Msa0460510:CDS 55.0%
! GATCTAGAACCCCTGCAACC+AGG - chr3_3:57931022-57931041 None:intergenic 55.0%
!!! GGCTAGTTTTCTGGCGATGG+TGG - chr3_3:57929043-57929062 None:intergenic 55.0%
GGGAGTGAGAGTAATGGCTC+TGG - chr3_3:57929064-57929083 None:intergenic 55.0%
! GGCGTTGGGAGTGAGAGTAA+TGG - chr3_3:57929070-57929089 None:intergenic 55.0%
! ATGGCGGAGATGATGGCGTT+GGG - chr3_3:57929084-57929103 None:intergenic 55.0%
! TATGGCGGAGATGATGGCGT+TGG - chr3_3:57929085-57929104 None:intergenic 55.0%
AACGCCATCATCTCCGCCAT+AGG + chr3_3:57929084-57929103 Msa0460510:CDS 55.0%
! GCTTCCTATGGCGGAGATGA+TGG - chr3_3:57929091-57929110 None:intergenic 55.0%
TATGGAGCGGCTTCCTATGG+CGG - chr3_3:57929100-57929119 None:intergenic 55.0%
GGTTGTGGAGGATTCAGGTG+TGG + chr3_3:57929191-57929210 Msa0460510:CDS 55.0%
ACCTCACGTGCAGACTCGTT+GGG - chr3_3:57929236-57929255 None:intergenic 55.0%
AACGAGTCTGCACGTGAGGT+GGG + chr3_3:57929236-57929255 Msa0460510:CDS 55.0%
CGTGGCAAACGATGCTGACA+AGG + chr3_3:57929627-57929646 Msa0460510:intron 55.0%
!! GCACCAAGAGCATCCAACTC+TGG - chr3_3:57930302-57930321 None:intergenic 55.0%
!! TTGGATGCTCTTGGTGCCCT+TGG + chr3_3:57930305-57930324 Msa0460510:CDS 55.0%
! GTGCCCTTGGTGACTTAGCA+TGG + chr3_3:57930318-57930337 Msa0460510:CDS 55.0%
TGGGTGGAATGTGAGACCAG+AGG + chr3_3:57930643-57930662 Msa0460510:CDS 55.0%
! GATCTAGAACCCCTGCAACC+AGG - chr3_3:57931022-57931041 None:intergenic 55.0%
ACGTGCAGACTCGTTGGGAG+AGG - chr3_3:57929231-57929250 None:intergenic 60.0%
TCCCAACGAGTCTGCACGTG+AGG + chr3_3:57929232-57929251 Msa0460510:CDS 60.0%
CACCTCACGTGCAGACTCGT+TGG - chr3_3:57929237-57929256 None:intergenic 60.0%
CAACGAGTCTGCACGTGAGG+TGG + chr3_3:57929235-57929254 Msa0460510:CDS 60.0%
! GCATGTGCTGGTGGAGAAGC+CGG + chr3_3:57929284-57929303 Msa0460510:CDS 60.0%
GAAGCCGGCAGCTCTTGATG+TGG + chr3_3:57929299-57929318 Msa0460510:CDS 60.0%
TCCGCCACATCAAGAGCTGC+CGG - chr3_3:57929306-57929325 None:intergenic 60.0%
TCCCGACGTCACACGAAACG+CGG + chr3_3:57930403-57930422 Msa0460510:CDS 60.0%
ACGTGCAGACTCGTTGGGAG+AGG - chr3_3:57929231-57929250 None:intergenic 60.0%
TCCCAACGAGTCTGCACGTG+AGG + chr3_3:57929232-57929251 Msa0460510:CDS 60.0%
CACCTCACGTGCAGACTCGT+TGG - chr3_3:57929237-57929256 None:intergenic 60.0%
CAACGAGTCTGCACGTGAGG+TGG + chr3_3:57929235-57929254 Msa0460510:CDS 60.0%
! GCATGTGCTGGTGGAGAAGC+CGG + chr3_3:57929284-57929303 Msa0460510:CDS 60.0%
GAAGCCGGCAGCTCTTGATG+TGG + chr3_3:57929299-57929318 Msa0460510:CDS 60.0%
TCCGCCACATCAAGAGCTGC+CGG - chr3_3:57929306-57929325 None:intergenic 60.0%
TCCCGACGTCACACGAAACG+CGG + chr3_3:57930403-57930422 Msa0460510:CDS 60.0%
! TGGCGATGGTGGCACAGCCT+AGG - chr3_3:57929032-57929051 None:intergenic 65.0%
GAGTCTGCACGTGAGGTGGG+CGG + chr3_3:57929239-57929258 Msa0460510:CDS 65.0%
GCCGGCAGCTCTTGATGTGG+CGG + chr3_3:57929302-57929321 Msa0460510:CDS 65.0%
TCGTGTGACGTCGGGAAGCG+CGG - chr3_3:57930399-57930418 None:intergenic 65.0%
GCCGCGTTTCGTGTGACGTC+GGG - chr3_3:57930407-57930426 None:intergenic 65.0%
GGCCGCGTTTCGTGTGACGT+CGG - chr3_3:57930408-57930427 None:intergenic 65.0%
GACGTCACACGAAACGCGGC+CGG + chr3_3:57930407-57930426 Msa0460510:CDS 65.0%
! TGGCGATGGTGGCACAGCCT+AGG - chr3_3:57929032-57929051 None:intergenic 65.0%
GAGTCTGCACGTGAGGTGGG+CGG + chr3_3:57929239-57929258 Msa0460510:CDS 65.0%
GCCGGCAGCTCTTGATGTGG+CGG + chr3_3:57929302-57929321 Msa0460510:CDS 65.0%
TCGTGTGACGTCGGGAAGCG+CGG - chr3_3:57930399-57930418 None:intergenic 65.0%
GCCGCGTTTCGTGTGACGTC+GGG - chr3_3:57930407-57930426 None:intergenic 65.0%
GGCCGCGTTTCGTGTGACGT+CGG - chr3_3:57930408-57930427 None:intergenic 65.0%
GACGTCACACGAAACGCGGC+CGG + chr3_3:57930407-57930426 Msa0460510:CDS 65.0%
! GGAAGCGCGGTGACGGTGGT+TGG - chr3_3:57930386-57930405 None:intergenic 70.0%
! GACGTCGGGAAGCGCGGTGA+CGG - chr3_3:57930393-57930412 None:intergenic 70.0%
! GGAAGCGCGGTGACGGTGGT+TGG - chr3_3:57930386-57930405 None:intergenic 70.0%
! GACGTCGGGAAGCGCGGTGA+CGG - chr3_3:57930393-57930412 None:intergenic 70.0%
! GTCGGGAAGCGCGGTGACGG+TGG - chr3_3:57930390-57930409 None:intergenic 75.0%
! GTCGGGAAGCGCGGTGACGG+TGG - chr3_3:57930390-57930409 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 57928961 57931164 57928961 ID=Msa0460510;Name=Msa0460510
chr3_3 mRNA 57928961 57931164 57928961 ID=Msa0460510-mRNA-1;Parent=Msa0460510;Name=Msa0460510-mRNA-1;_AED=0.01;_eAED=0.01;_QI=36|1|1|1|1|1|2|308|363
chr3_3 exon 57928961 57929467 57928961 ID=Msa0460510-mRNA-1:exon:11916;Parent=Msa0460510-mRNA-1
chr3_3 exon 57930236 57931164 57930236 ID=Msa0460510-mRNA-1:exon:11917;Parent=Msa0460510-mRNA-1
chr3_3 five_prime_UTR 57928961 57928996 57928961 ID=Msa0460510-mRNA-1:five_prime_utr;Parent=Msa0460510-mRNA-1
chr3_3 CDS 57928997 57929467 57928997 ID=Msa0460510-mRNA-1:cds;Parent=Msa0460510-mRNA-1
chr3_3 CDS 57930236 57930856 57930236 ID=Msa0460510-mRNA-1:cds;Parent=Msa0460510-mRNA-1
chr3_3 three_prime_UTR 57930857 57931164 57930857 ID=Msa0460510-mRNA-1:three_prime_utr;Parent=Msa0460510-mRNA-1
Gene Sequence

>Msa0460510

ATGACTGCGAAAGATACAGTGCGTTTTGGCATCCTAGGCTGTGCCACCATCGCCAGAAAACTAGCCAGAGCCATTACTCTCACTCCCAACGCCATCATCTCCGCCATAGGAAGCCGCTCCATATCAAAGGCATCAAAATTTGCCGTCGAAAACAGTTTACCAGCCAGTGTAAGAATCTATGGTAGCTATGATGAGGTTGTGGAGGATTCAGGTGTGGATGCAGTGTACATTCCTCTCCCAACGAGTCTGCACGTGAGGTGGGCGGTTGCTGCCGCGAGTAAGAAGAAGCATGTGCTGGTGGAGAAGCCGGCAGCTCTTGATGTGGCGGAGCTTGATTTGATCTTAGAAGCTTGTGAGGCCAATGGTGTGCAGTTTATGGATGGTTGTATGTGGTTGCATCACCCTAGGACTTTGAACATGGAACACTTGCTTGATCTTTCTAATTCCGATGGTATTGGACCCGTTCAATTTATCCATAGCACATCAACAATGCCAACAACTCAAGAATTCTTGGAGAATAACATTAGAGTAAAGCCAGAGTTGGATGCTCTTGGTGCCCTTGGTGACTTAGCATGGTACTGCATTGGTGCATCCTTATGGGCAAAGGGCTACAAGCTACCAACCACCGTCACCGCGCTTCCCGACGTCACACGAAACGCGGCCGGAGTCATATTATCAATCACATCTTCTTTGCAATGGGACCAACCAAATCAAACAGTTGCAAATATTCACTGCTCATTTCTTTCTCACACGTCCATGGACTTATCTATAAGTGGTTCCAATGGGTCTATGCATCTTAAGGACTTCATAATCCCATACAAGGAGACTAGTGCTTCATTTGACTTCACATTTGGTGCAAAATTTGTTGATCTTCACATTGGGTGGAATGTGAGACCAGAGGAAGTTCATGTTGCCAACAAGCTCCCTCAAGAAGCTTTGATGATACAAGAGTTTGCTAGGCTTGTTGCAAGTATTAGAGATTATGGGTCTCAGCCTTCTACAAAATGGCCAGAAATTAGTAGAAAGACTCAATTGGTAGTTGATGCTGTGAAAAAGTCTTTAGAGCTTGGCTGCAAACCTGTTTCCTTATAG

Protein sequence

>Msa0460510

MTAKDTVRFGILGCATIARKLARAITLTPNAIISAIGSRSISKASKFAVENSLPASVRIYGSYDEVVEDSGVDAVYIPLPTSLHVRWAVAAASKKKHVLVEKPAALDVAELDLILEACEANGVQFMDGCMWLHHPRTLNMEHLLDLSNSDGIGPVQFIHSTSTMPTTQEFLENNIRVKPELDALGALGDLAWYCIGASLWAKGYKLPTTVTALPDVTRNAAGVILSITSSLQWDQPNQTVANIHCSFLSHTSMDLSISGSNGSMHLKDFIIPYKETSASFDFTFGAKFVDLHIGWNVRPEEVHVANKLPQEALMIQEFARLVASIRDYGSQPSTKWPEISRKTQLVVDAVKKSLELGCKPVSL*