Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032010 | Msa0049670 | -0.817617 | 3.004574e-52 | -8.615850e-47 |
| Msa0032010 | Msa0081700 | -0.818290 | 2.117250e-52 | -8.615850e-47 |
| Msa0032010 | Msa0118620 | 0.804218 | 2.400084e-49 | -8.615850e-47 |
| Msa0032010 | Msa0127910 | -0.812103 | 5.016056e-51 | -8.615850e-47 |
| Msa0032010 | Msa0172040 | 0.864737 | 9.802792e-65 | -8.615850e-47 |
| Msa0032010 | Msa0183960 | -0.823042 | 1.713807e-53 | -8.615850e-47 |
| Msa0032010 | Msa0228360 | -0.813110 | 3.021804e-51 | -8.615850e-47 |
| Msa0032010 | Msa0232170 | -0.800875 | 1.173750e-48 | -8.615850e-47 |
| Msa0032010 | Msa0258280 | -0.809132 | 2.200520e-50 | -8.615850e-47 |
| Msa0032010 | Msa0378440 | -0.819833 | 9.437564e-53 | -8.615850e-47 |
| Msa0032010 | Msa0390590 | -0.813801 | 2.129429e-51 | -8.615850e-47 |
| Msa0032010 | Msa0427890 | -0.826800 | 2.223332e-54 | -8.615850e-47 |
| Msa0032010 | Msa0460510 | -0.812367 | 4.394086e-51 | -8.615850e-47 |
| Msa0032010 | Msa0474120 | -0.827120 | 1.864313e-54 | -8.615850e-47 |
| Msa0032010 | Msa0475690 | -0.806460 | 8.137452e-50 | -8.615850e-47 |
| Msa0032010 | Msa0480550 | 0.802084 | 6.633469e-49 | -8.615850e-47 |
| Msa0032010 | Msa0550810 | -0.811243 | 7.715955e-51 | -8.615850e-47 |
| Msa0032010 | Msa0554770 | -0.810144 | 1.334021e-50 | -8.615850e-47 |
| Msa0032010 | Msa0559440 | -0.805413 | 1.351093e-49 | -8.615850e-47 |
| Msa0032010 | Msa0559640 | -0.819294 | 1.252753e-52 | -8.615850e-47 |
| Msa0032010 | Msa0577290 | -0.818425 | 1.973700e-52 | -8.615850e-47 |
| Msa0032010 | Msa0577960 | -0.814676 | 1.364347e-51 | -8.615850e-47 |
| Msa0032010 | Msa0617470 | -0.808293 | 3.324958e-50 | -8.615850e-47 |
| Msa0032010 | Msa0622930 | -0.814691 | 1.354195e-51 | -8.615850e-47 |
| Msa0032010 | Msa0625550 | -0.818509 | 1.888782e-52 | -8.615850e-47 |
| Msa0032010 | Msa0654400 | -0.807745 | 4.351186e-50 | -8.615850e-47 |
| Msa0032010 | Msa0654500 | -0.817154 | 3.820627e-52 | -8.615850e-47 |
| Msa0032010 | Msa0654570 | -0.825091 | 5.662208e-54 | -8.615850e-47 |
| Msa0032010 | Msa0700250 | -0.803040 | 4.213906e-49 | -8.615850e-47 |
| Msa0032010 | Msa0708840 | -0.806472 | 8.090726e-50 | -8.615850e-47 |
| Msa0032010 | Msa0742690 | -0.838219 | 3.275559e-57 | -8.615850e-47 |
| Msa0032010 | Msa0779830 | -0.839579 | 1.456444e-57 | -8.615850e-47 |
| Msa0032010 | Msa0826370 | 0.802156 | 6.411243e-49 | -8.615850e-47 |
| Msa0032010 | Msa0827560 | -0.835886 | 1.292278e-56 | -8.615850e-47 |
| Msa0032010 | Msa0862750 | -0.833642 | 4.743842e-56 | -8.615850e-47 |
| Msa0032010 | Msa0865820 | 0.807517 | 4.863169e-50 | -8.615850e-47 |
| Msa0032010 | Msa0869060 | -0.805696 | 1.178644e-49 | -8.615850e-47 |
| Msa0032010 | Msa0869320 | -0.812343 | 4.447791e-51 | -8.615850e-47 |
| Msa0032010 | Msa0879940 | -0.803485 | 3.409102e-49 | -8.615850e-47 |
| Msa0032010 | Msa0906100 | -0.813627 | 2.325696e-51 | -8.615850e-47 |
| Msa0032010 | Msa0934290 | -0.818085 | 2.356566e-52 | -8.615850e-47 |
| Msa0032010 | Msa0956600 | -0.809565 | 1.776585e-50 | -8.615850e-47 |
| Msa0032010 | Msa0971780 | -0.813899 | 2.025889e-51 | -8.615850e-47 |
| Msa0032010 | Msa1016450 | -0.802797 | 4.731094e-49 | -8.615850e-47 |
| Msa0032010 | Msa1039150 | -0.801263 | 9.778389e-49 | -8.615850e-47 |
| Msa0032010 | Msa1057940 | -0.813180 | 2.915877e-51 | -8.615850e-47 |
| Msa0032010 | Msa1078210 | -0.808350 | 3.233715e-50 | -8.615850e-47 |
| Msa0032010 | Msa1104020 | -0.808359 | 3.219663e-50 | -8.615850e-47 |
| Msa0032010 | Msa1123440 | -0.807398 | 5.154489e-50 | -8.615850e-47 |
| Msa0032010 | Msa1152350 | -0.810163 | 1.321345e-50 | -8.615850e-47 |
| Msa0032010 | Msa1212150 | -0.803200 | 3.904781e-49 | -8.615850e-47 |
| Msa0032010 | Msa1235960 | -0.836717 | 7.945893e-57 | -8.615850e-47 |
| Msa0032010 | Msa1235990 | -0.840483 | 8.464319e-58 | -8.615850e-47 |
| Msa0032010 | Msa1279250 | -0.808996 | 2.353178e-50 | -8.615850e-47 |
| Msa0032010 | Msa1316090 | -0.819264 | 1.272631e-52 | -8.615850e-47 |
| Msa0032010 | Msa1374210 | -0.815870 | 7.405380e-52 | -8.615850e-47 |
| Msa0032010 | Msa1375640 | 0.809588 | 1.756775e-50 | -8.615850e-47 |
| Msa0032010 | Msa1381870 | -0.821918 | 3.126284e-53 | -8.615850e-47 |
| Msa0032010 | Msa1386910 | -0.800642 | 1.309568e-48 | -8.615850e-47 |
| Msa0032010 | Msa1397560 | -0.823960 | 1.045262e-53 | -8.615850e-47 |
| Msa0032010 | Msa1410500 | -0.800281 | 1.551578e-48 | -8.615850e-47 |
| Msa0032010 | Msa1412800 | -0.824309 | 8.655734e-54 | -8.615850e-47 |
| Msa0032010 | Msa1424490 | -0.802777 | 4.776009e-49 | -8.615850e-47 |
| Msa0032010 | Msa1426690 | -0.801907 | 7.216049e-49 | -8.615850e-47 |
| Msa0032010 | Msa1433060 | -0.810795 | 9.651516e-51 | -8.615850e-47 |
| Msa0032010 | Msa1461840 | -0.807247 | 5.549379e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032010 | MtrunA17_Chr1g0190271 | 94.444 | 288 | 16 | 0 | 1 | 288 | 1 | 288 | 0.0 | 556 |
| Msa0032010 | MtrunA17_Chr4g0018611 | 38.339 | 313 | 141 | 10 | 6 | 278 | 2 | 302 | 1.31e-43 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032010 | AT5G09380.2 | 44.056 | 286 | 140 | 12 | 6 | 286 | 2 | 272 | 6.93e-61 | 194 |
| Msa0032010 | AT5G09380.3 | 44.262 | 244 | 116 | 12 | 6 | 244 | 2 | 230 | 1.12e-45 | 154 |
| Msa0032010 | AT5G09380.1 | 39.910 | 223 | 112 | 8 | 72 | 286 | 8 | 216 | 5.52e-43 | 147 |
| Msa0032010 | AT4G25180.1 | 32.468 | 308 | 170 | 6 | 11 | 286 | 6 | 307 | 8.68e-40 | 141 |
Find 87 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTTGATGAGAAGGAATT+TGG | 0.103967 | 1_1:+58921477 | Msa0032010:CDS |
| GACTTGCCACCTGGCTTAAT+TGG | 0.161081 | 1_1:+58921791 | Msa0032010:CDS |
| GATTATTATGGATTTGAATA+AGG | 0.218725 | 1_1:+58919459 | Msa0032010:exon |
| AGATCGCCATTGGATTATTA+TGG | 0.222843 | 1_1:+58919447 | Msa0032010:exon |
| GATCATCACACGGTGGTTTC+CGG | 0.237228 | 1_1:+58919270 | Msa0032010:five_prime_UTR |
| ACTCTAGGAGGTGGAGCTTT+AGG | 0.254194 | 1_1:-58919624 | None:intergenic |
| TTACCTGGGTTGCCTGAATA+TGG | 0.269034 | 1_1:-58921171 | None:intergenic |
| AGCAGTGGAGCTTGACCTTT+TGG | 0.287647 | 1_1:+58921545 | Msa0032010:CDS |
| AACTTGATGAGAAGGAATTT+GGG | 0.290510 | 1_1:+58921478 | Msa0032010:CDS |
| TTCCTCAAGGGATGAACTAT+TGG | 0.311119 | 1_1:-58921147 | None:intergenic |
| TTACCTTCACAAATTGCTTT+TGG | 0.328302 | 1_1:+58920754 | Msa0032010:CDS |
| TTCACTCTTGCTCCCACCTT+TGG | 0.334265 | 1_1:-58920815 | None:intergenic |
| ATGAAGAACGCACTTGCCTC+TGG | 0.347213 | 1_1:-58921665 | None:intergenic |
| ATGATTTGAGATAAGTTGAT+TGG | 0.369910 | 1_1:-58920786 | None:intergenic |
| TGTAGGAGAATGCGATGAAT+AGG | 0.372729 | 1_1:+58920099 | Msa0032010:intron |
| ATGCGGTACTTACATCATAA+AGG | 0.374896 | 1_1:-58921865 | None:intergenic |
| TACCTCTTAACTTCTACCTT+TGG | 0.383568 | 1_1:-58919648 | None:intergenic |
| AGTCGCTGCAAAAGGGGTTC+AGG | 0.408724 | 1_1:+58919952 | Msa0032010:CDS |
| GATAATAAAGTCGCTGCAAA+AGG | 0.409682 | 1_1:+58919944 | Msa0032010:CDS |
| TGCGCTTTCATCATAAGTTC+TGG | 0.411273 | 1_1:-58921514 | None:intergenic |
| CCCTTGAGGAAACCATATTC+AGG | 0.422684 | 1_1:+58921159 | Msa0032010:CDS |
| TTATCTTTACCATCAGCATC+TGG | 0.431495 | 1_1:-58921722 | None:intergenic |
| TCAAGTGCGGCATCTATGTC+CGG | 0.435813 | 1_1:-58922682 | None:intergenic |
| ATAGAGGTGCGGCGAAGCTC+TGG | 0.437569 | 1_1:+58921759 | Msa0032010:CDS |
| ACCTTTGGCACTCTAGGAGG+TGG | 0.443489 | 1_1:-58919633 | None:intergenic |
| ACTTCTACCTTTGGCACTCT+AGG | 0.448884 | 1_1:-58919639 | None:intergenic |
| TCAACTTATCTCAAATCATA+TGG | 0.456525 | 1_1:+58920790 | Msa0032010:CDS |
| AAAGCCTCCTCAACGAAGAA+AGG | 0.458707 | 1_1:+58919486 | Msa0032010:CDS |
| TGCGGTACTTACATCATAAA+GGG | 0.465322 | 1_1:-58921864 | None:intergenic |
| CACCGTGTGATGATCGGAAA+AGG | 0.467365 | 1_1:-58919262 | None:intergenic |
| AAATGGTTGCAGGTTTCCTC+GGG | 0.477537 | 1_1:+58922562 | Msa0032010:intron |
| TGCCAAAGGTAGAAGTTAAG+AGG | 0.486931 | 1_1:+58919646 | Msa0032010:CDS |
| AAAATGGTTGCAGGTTTCCT+CGG | 0.489431 | 1_1:+58922561 | Msa0032010:intron |
| ATCGGAAAAGGAGGGACTGC+AGG | 0.491569 | 1_1:-58919250 | None:intergenic |
| TTTATTTATTTATTGAAGAT+CGG | 0.497583 | 1_1:+58922811 | Msa0032010:three_prime_UTR |
| GCCGCACCTCTATAACCTCC+AGG | 0.501297 | 1_1:-58921749 | None:intergenic |
| GGAAACCACCGTGTGATGAT+CGG | 0.505022 | 1_1:-58919268 | None:intergenic |
| AAGCGCCCTGGAGGTTATAG+AGG | 0.508087 | 1_1:+58921743 | Msa0032010:CDS |
| CAAGTGCGGCATCTATGTCC+GGG | 0.508235 | 1_1:-58922681 | None:intergenic |
| TGAAAGAAAATAGAAATGCT+TGG | 0.508821 | 1_1:+58922880 | Msa0032010:three_prime_UTR |
| ATAATAAAGTCGCTGCAAAA+GGG | 0.509835 | 1_1:+58919945 | Msa0032010:CDS |
| AAGTTGAACGACTTGCCACC+TGG | 0.511147 | 1_1:+58921782 | Msa0032010:CDS |
| AGTGAAAATTCAGCATTCAA+TGG | 0.517856 | 1_1:+58920832 | Msa0032010:CDS |
| CCTGAATATGGTTTCCTCAA+GGG | 0.520964 | 1_1:-58921159 | None:intergenic |
| CTCAAATCATATGGTACCAA+AGG | 0.523662 | 1_1:+58920799 | Msa0032010:CDS |
| CAAACCTTTCTTCGTTGAGG+AGG | 0.525936 | 1_1:-58919490 | None:intergenic |
| AAATCATATGGTACCAAAGG+TGG | 0.526126 | 1_1:+58920802 | Msa0032010:CDS |
| TGAAGAACGCACTTGCCTCT+GGG | 0.526977 | 1_1:-58921664 | None:intergenic |
| GATGGTAAAGATAAGCGCCC+TGG | 0.537069 | 1_1:+58921731 | Msa0032010:CDS |
| TCTTAATAAATATAGAAAGA+AGG | 0.539399 | 1_1:+58922769 | Msa0032010:three_prime_UTR |
| CAGGCGGAAAGACGTGGGAG+AGG | 0.540326 | 1_1:-58919231 | None:intergenic |
| GCCTGAATATGGTTTCCTCA+AGG | 0.542011 | 1_1:-58921160 | None:intergenic |
| CAAGTTTGCTACTGTAACCC+CGG | 0.554282 | 1_1:+58922663 | Msa0032010:CDS |
| AAACAAACCTTTCTTCGTTG+AGG | 0.554404 | 1_1:-58919493 | None:intergenic |
| GGTAAAGTTAAGCTGAAGCT+TGG | 0.557395 | 1_1:+58921836 | Msa0032010:CDS |
| TTTCTGCAGCGAAGTTGTTG+AGG | 0.557435 | 1_1:+58919919 | Msa0032010:intron |
| GGACTGCAGGCGGAAAGACG+TGG | 0.559357 | 1_1:-58919237 | None:intergenic |
| AAGCGCAGCAAGTTCAGCAG+TGG | 0.565227 | 1_1:+58921530 | Msa0032010:CDS |
| CTGCAGCGAAGTTGTTGAGG+AGG | 0.572157 | 1_1:+58919922 | Msa0032010:intron |
| CGGAGGCTTGACGCAGGAGA+CGG | 0.577002 | 1_1:-58919199 | None:intergenic |
| GCGGAAAGACGTGGGAGAGG+AGG | 0.578059 | 1_1:-58919228 | None:intergenic |
| GACTGCAGGCGGAAAGACGT+GGG | 0.578300 | 1_1:-58919236 | None:intergenic |
| AAACCATATTCAGGCAACCC+AGG | 0.586222 | 1_1:+58921168 | Msa0032010:CDS |
| AGAAAGAATACAAAGAACCA+TGG | 0.590402 | 1_1:+58920969 | Msa0032010:CDS |
| TCAAATCCATAATAATCCAA+TGG | 0.597623 | 1_1:-58919453 | None:intergenic |
| TCCACCTCCTAGAGTGCCAA+AGG | 0.597729 | 1_1:+58919632 | Msa0032010:CDS |
| ATCCAATAGTTCATCCCTTG+AGG | 0.604156 | 1_1:+58921145 | Msa0032010:CDS |
| CGTGTGATGATCGGAAAAGG+AGG | 0.604807 | 1_1:-58919259 | None:intergenic |
| GCACCAAAAGCAATTTGTGA+AGG | 0.606014 | 1_1:-58920757 | None:intergenic |
| GAAAGAATACAAAGAACCAT+GGG | 0.607191 | 1_1:+58920970 | Msa0032010:CDS |
| TCTACCTTTGGCACTCTAGG+AGG | 0.607668 | 1_1:-58919636 | None:intergenic |
| CCGCACCTCTATAACCTCCA+GGG | 0.614948 | 1_1:-58921748 | None:intergenic |
| ACTTGATGAGAAGGAATTTG+GGG | 0.615962 | 1_1:+58921479 | Msa0032010:CDS |
| CCCTGGAGGTTATAGAGGTG+CGG | 0.619090 | 1_1:+58921748 | Msa0032010:CDS |
| AATCATATGGTACCAAAGGT+GGG | 0.623535 | 1_1:+58920803 | Msa0032010:CDS |
| CATATACATTGTGACGTCGA+AGG | 0.631565 | 1_1:-58919979 | None:intergenic |
| GGAAAAGGAGGGACTGCAGG+CGG | 0.640754 | 1_1:-58919247 | None:intergenic |
| TGATGAGAAGGAATTTGGGG+AGG | 0.643571 | 1_1:+58921482 | Msa0032010:CDS |
| TAATAAAGTCGCTGCAAAAG+GGG | 0.643629 | 1_1:+58919946 | Msa0032010:CDS |
| ATCACTTAAACAATCAAGTG+CGG | 0.644848 | 1_1:-58922695 | None:intergenic |
| TTAATCATAGGAATAACTGG+TGG | 0.659717 | 1_1:-58921695 | None:intergenic |
| AAATATACAATTCATACCCG+AGG | 0.667331 | 1_1:-58922578 | None:intergenic |
| GTGTGATGATCGGAAAAGGA+GGG | 0.667650 | 1_1:-58919258 | None:intergenic |
| AAGTGCGGCATCTATGTCCG+GGG | 0.672815 | 1_1:-58922680 | None:intergenic |
| GGTAAAGATAAGCGCCCTGG+AGG | 0.687013 | 1_1:+58921734 | Msa0032010:CDS |
| AAAATGCTTGTGTACAAGAG+TGG | 0.690377 | 1_1:+58921815 | Msa0032010:CDS |
| TTGGCAGGAGGAAAACCCAG+AGG | 0.776096 | 1_1:+58921649 | Msa0032010:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAGTAAATTAAATTAGA+TGG | + | chr1_1:58921236-58921255 | Msa0032010:intron | 10.0% |
| !! | TTTATTTATTTATTGAAGAT+CGG | + | chr1_1:58922811-58922830 | Msa0032010:three_prime_UTR | 10.0% |
| !!! | GTTTCAATGTTTTTTTTTTT+TGG | + | chr1_1:58919549-58919568 | Msa0032010:intron | 15.0% |
| !! | TAATTATATACTAATCATAG+AGG | + | chr1_1:58922304-58922323 | Msa0032010:intron | 15.0% |
| !! | TGGAAATAAAACTTATTAAA+TGG | + | chr1_1:58922381-58922400 | Msa0032010:intron | 15.0% |
| !! | TCTTAATAAATATAGAAAGA+AGG | + | chr1_1:58922769-58922788 | Msa0032010:three_prime_UTR | 15.0% |
| !! | TTGAATGTGATATTAGTTAT+TGG | - | chr1_1:58919351-58919370 | None:intergenic | 20.0% |
| !! | GATTATTATGGATTTGAATA+AGG | + | chr1_1:58919459-58919478 | Msa0032010:exon | 20.0% |
| !! | AGTACAAACTATTATCAAAT+AGG | - | chr1_1:58919778-58919797 | None:intergenic | 20.0% |
| !!! | TCACAATGTATATGTTATTT+CGG | + | chr1_1:58919988-58920007 | Msa0032010:intron | 20.0% |
| !! | ATTTAAAAGTCACATAAAGT+TGG | - | chr1_1:58920187-58920206 | None:intergenic | 20.0% |
| !!! | ACTTTATGTGACTTTTAAAT+CGG | + | chr1_1:58920187-58920206 | Msa0032010:intron | 20.0% |
| !!! | AAAATTGGTCATTTTAAAGA+TGG | - | chr1_1:58920344-58920363 | None:intergenic | 20.0% |
| !! | AATCTCATAATTCTGTAAAA+AGG | - | chr1_1:58921325-58921344 | None:intergenic | 20.0% |
| !!! | AAAATTGATTTCCAAAAGTT+CGG | - | chr1_1:58921579-58921598 | None:intergenic | 20.0% |
| !!! | ACTTTTGGAAATCAATTTTA+TGG | + | chr1_1:58921580-58921599 | Msa0032010:intron | 20.0% |
| !!! | TTTTTAATCATAGGAATAAC+TGG | - | chr1_1:58921701-58921720 | None:intergenic | 20.0% |
| !! | TGTAATTTATCTTATGAATG+CGG | - | chr1_1:58921885-58921904 | None:intergenic | 20.0% |
| !!! | TTATTTTCTCGATAAAACAT+AGG | - | chr1_1:58921987-58922006 | None:intergenic | 20.0% |
| !!! | TATGTTTTATCGAGAAAATA+AGG | + | chr1_1:58921986-58922005 | Msa0032010:intron | 20.0% |
| !!! | ATGTTTTATCGAGAAAATAA+GGG | + | chr1_1:58921987-58922006 | Msa0032010:intron | 20.0% |
| !! | TCAAATATTTGTTTAGGAAA+GGG | - | chr1_1:58922037-58922056 | None:intergenic | 20.0% |
| !! | TTCAAATATTTGTTTAGGAA+AGG | - | chr1_1:58922038-58922057 | None:intergenic | 20.0% |
| !! | CTGTATTCAAATATTTGTTT+AGG | - | chr1_1:58922043-58922062 | None:intergenic | 20.0% |
| !! | TTAAAAGTTAAAACACAGAA+TGG | + | chr1_1:58922097-58922116 | Msa0032010:intron | 20.0% |
| !! | CAAACTTAGATAATATTACA+TGG | + | chr1_1:58922269-58922288 | Msa0032010:intron | 20.0% |
| !! | TGGAAATAAATGATATGTAA+TGG | + | chr1_1:58922361-58922380 | Msa0032010:intron | 20.0% |
| !!! | TATTTTTTTAAAATGGTTGC+AGG | + | chr1_1:58922552-58922571 | Msa0032010:intron | 20.0% |
| ! | TCAAATCCATAATAATCCAA+TGG | - | chr1_1:58919456-58919475 | None:intergenic | 25.0% |
| !! | ATTTAACAACATTGATTACC+TGG | + | chr1_1:58919866-58919885 | Msa0032010:intron | 25.0% |
| !!! | ATGTATATGTTATTTCGGTT+TGG | + | chr1_1:58919993-58920012 | Msa0032010:intron | 25.0% |
| !!! | AGAAAAAAGGTATTGTATGT+TGG | + | chr1_1:58920135-58920154 | Msa0032010:intron | 25.0% |
| !! | TGAAAAAAGTAAGGTTTTTC+TGG | - | chr1_1:58920232-58920251 | None:intergenic | 25.0% |
| ! | CAGGATTTATGAAAAAAGTA+AGG | - | chr1_1:58920241-58920260 | None:intergenic | 25.0% |
| ! | CTATCTAAATTCACTATTTC+AGG | - | chr1_1:58920260-58920279 | None:intergenic | 25.0% |
| !! | ATCTAAAGTAGTAGCAAAAT+TGG | - | chr1_1:58920359-58920378 | None:intergenic | 25.0% |
| ! | TCTCTTTCTGTAAATAGTTT+CGG | + | chr1_1:58920478-58920497 | Msa0032010:intron | 25.0% |
| ! | TAGAGCTTCACTATTATATT+TGG | - | chr1_1:58920605-58920624 | None:intergenic | 25.0% |
| !! | AAATTGCTTCACCTATTTTA+TGG | + | chr1_1:58920722-58920741 | Msa0032010:intron | 25.0% |
| !!! | ATGATTTGAGATAAGTTGAT+TGG | - | chr1_1:58920789-58920808 | None:intergenic | 25.0% |
| ! | TCAACTTATCTCAAATCATA+TGG | + | chr1_1:58920790-58920809 | Msa0032010:CDS | 25.0% |
| ! | ATTAAATGAAAATGCCTTGA+TGG | - | chr1_1:58920865-58920884 | None:intergenic | 25.0% |
| ! | TAAATGTGGTTAAAAAAGGA+AGG | - | chr1_1:58920922-58920941 | None:intergenic | 25.0% |
| ! | AGACTAAATGTGGTTAAAAA+AGG | - | chr1_1:58920926-58920945 | None:intergenic | 25.0% |
| !! | TCTTTTGCTTTATATCAAAG+AGG | - | chr1_1:58921208-58921227 | None:intergenic | 25.0% |
| ! | TCTTTGATATAAAGCAAAAG+AGG | + | chr1_1:58921207-58921226 | Msa0032010:intron | 25.0% |
| ! | AGTTACCAAATTGACTAATT+GGG | - | chr1_1:58921290-58921309 | None:intergenic | 25.0% |
| ! | TAGTTACCAAATTGACTAAT+TGG | - | chr1_1:58921291-58921310 | None:intergenic | 25.0% |
| !!! | TAATGTTTTGAGCAAATTGT+TGG | + | chr1_1:58921630-58921649 | Msa0032010:intron | 25.0% |
| ! | CAGAAAACAAAATGAAAACA+AGG | + | chr1_1:58922060-58922079 | Msa0032010:intron | 25.0% |
| !! | TATGACGATTTCTCAATTTT+AGG | - | chr1_1:58922156-58922175 | None:intergenic | 25.0% |
| ! | ACTTAGATAATATTACATGG+AGG | + | chr1_1:58922272-58922291 | Msa0032010:intron | 25.0% |
| ! | AAAAACAGTTGAATTAGTAC+TGG | + | chr1_1:58922341-58922360 | Msa0032010:intron | 25.0% |
| CATGTTCAATAAACGGAAAA+CGG | - | chr1_1:58919316-58919335 | None:intergenic | 30.0% | |
| GAGTGTTCATGTTCAATAAA+CGG | - | chr1_1:58919323-58919342 | None:intergenic | 30.0% | |
| !!! | TTTTAGTTTAAGATCGCCAT+TGG | + | chr1_1:58919437-58919456 | Msa0032010:intron | 30.0% |
| TTGCGAATAGTAGAAAATAG+TGG | + | chr1_1:58919710-58919729 | Msa0032010:intron | 30.0% | |
| ATAATAAAGTCGCTGCAAAA+GGG | + | chr1_1:58919945-58919964 | Msa0032010:CDS | 30.0% | |
| ATCACAGAAAACTTGAACAA+GGG | - | chr1_1:58920035-58920054 | None:intergenic | 30.0% | |
| AATCACAGAAAACTTGAACA+AGG | - | chr1_1:58920036-58920055 | None:intergenic | 30.0% | |
| ! | TTCTGGAAACAGAAAATCAA+CGG | - | chr1_1:58920215-58920234 | None:intergenic | 30.0% |
| ATAGGAATGGAACAAACATT+CGG | - | chr1_1:58920568-58920587 | None:intergenic | 30.0% | |
| AACACTGCAAACCATAAAAT+AGG | - | chr1_1:58920736-58920755 | None:intergenic | 30.0% | |
| ! | TTACCTTCACAAATTGCTTT+TGG | + | chr1_1:58920754-58920773 | Msa0032010:CDS | 30.0% |
| AGTGAAAATTCAGCATTCAA+TGG | + | chr1_1:58920832-58920851 | Msa0032010:CDS | 30.0% | |
| AGAAAGAATACAAAGAACCA+TGG | + | chr1_1:58920969-58920988 | Msa0032010:CDS | 30.0% | |
| GAAAGAATACAAAGAACCAT+GGG | + | chr1_1:58920970-58920989 | Msa0032010:CDS | 30.0% | |
| TTTATATCAAAGAGGATTCC+TGG | - | chr1_1:58921200-58921219 | None:intergenic | 30.0% | |
| ATATGTGAAGTTAAAGCAAC+TGG | - | chr1_1:58921444-58921463 | None:intergenic | 30.0% | |
| GATAGAAAAACTTGATGAGA+AGG | + | chr1_1:58921470-58921489 | Msa0032010:intron | 30.0% | |
| AAACTTGATGAGAAGGAATT+TGG | + | chr1_1:58921477-58921496 | Msa0032010:CDS | 30.0% | |
| AACTTGATGAGAAGGAATTT+GGG | + | chr1_1:58921478-58921497 | Msa0032010:CDS | 30.0% | |
| TTAATCATAGGAATAACTGG+TGG | - | chr1_1:58921698-58921717 | None:intergenic | 30.0% | |
| !!! | GCATCTGGTTTTTTAATCAT+AGG | - | chr1_1:58921710-58921729 | None:intergenic | 30.0% |
| ATTAAAAAACCAGATGCTGA+TGG | + | chr1_1:58921713-58921732 | Msa0032010:CDS | 30.0% | |
| TATTAAATGGAAGTTAGTCG+TGG | + | chr1_1:58922394-58922413 | Msa0032010:intron | 30.0% | |
| AAATATACAATTCATACCCG+AGG | - | chr1_1:58922581-58922600 | None:intergenic | 30.0% | |
| !!! | AAAAGTTTTGTTCTGCACTT+GGG | + | chr1_1:58922632-58922651 | Msa0032010:CDS | 30.0% |
| ATCACTTAAACAATCAAGTG+CGG | - | chr1_1:58922698-58922717 | None:intergenic | 30.0% | |
| GAAAGAGGAAATGAGTATAC+CGG | - | chr1_1:58919292-58919311 | None:intergenic | 35.0% | |
| AGATCGCCATTGGATTATTA+TGG | + | chr1_1:58919447-58919466 | Msa0032010:exon | 35.0% | |
| AAACAAACCTTTCTTCGTTG+AGG | - | chr1_1:58919496-58919515 | None:intergenic | 35.0% | |
| TACCTCTTAACTTCTACCTT+TGG | - | chr1_1:58919651-58919670 | None:intergenic | 35.0% | |
| TTGTTAAATAGCAGCGCTAT+AGG | - | chr1_1:58919855-58919874 | None:intergenic | 35.0% | |
| GAGTAACAACAAATTAAGCC+AGG | - | chr1_1:58919887-58919906 | None:intergenic | 35.0% | |
| GATAATAAAGTCGCTGCAAA+AGG | + | chr1_1:58919944-58919963 | Msa0032010:CDS | 35.0% | |
| TAATAAAGTCGCTGCAAAAG+GGG | + | chr1_1:58919946-58919965 | Msa0032010:CDS | 35.0% | |
| ACGATGAAGCATGAGAAAAA+AGG | + | chr1_1:58920122-58920141 | Msa0032010:CDS | 35.0% | |
| !! | GTATTGTATGTTGGTGCTTT+TGG | + | chr1_1:58920144-58920163 | Msa0032010:intron | 35.0% |
| !! | GGTGCTTTTGGTATTGAAAT+TGG | + | chr1_1:58920156-58920175 | Msa0032010:intron | 35.0% |
| GTGAGATTAAGTTTGCCTAA+TGG | + | chr1_1:58920383-58920402 | Msa0032010:intron | 35.0% | |
| !! | GAGGAACATTTTCTAAGAAC+AGG | + | chr1_1:58920418-58920437 | Msa0032010:intron | 35.0% |
| !! | CATTCTCAAGTTGTTTTGCA+CGG | - | chr1_1:58920451-58920470 | None:intergenic | 35.0% |
| ! | GTCACATCTTACTTGTTTCT+TGG | + | chr1_1:58920523-58920542 | Msa0032010:intron | 35.0% |
| ! | CGATAAAGCATTCATAGGAA+TGG | - | chr1_1:58920581-58920600 | None:intergenic | 35.0% |
| ! | TTGGTCGATAAAGCATTCAT+AGG | - | chr1_1:58920586-58920605 | None:intergenic | 35.0% |
| TACTCCTGCTTTAGCAAAAA+GGG | - | chr1_1:58920680-58920699 | None:intergenic | 35.0% | |
| CTCAAATCATATGGTACCAA+AGG | + | chr1_1:58920799-58920818 | Msa0032010:CDS | 35.0% | |
| AAATCATATGGTACCAAAGG+TGG | + | chr1_1:58920802-58920821 | Msa0032010:CDS | 35.0% | |
| AATCATATGGTACCAAAGGT+GGG | + | chr1_1:58920803-58920822 | Msa0032010:CDS | 35.0% | |
| GGTAAAGCATAGACTAAATG+TGG | - | chr1_1:58920936-58920955 | None:intergenic | 35.0% | |
| TTTAGTCTATGCTTTACCAC+AGG | + | chr1_1:58920938-58920957 | Msa0032010:intron | 35.0% | |
| ! | GAAATATTGATTGCTGCTTC+AGG | + | chr1_1:58921107-58921126 | Msa0032010:intron | 35.0% |
| GCAATCCCAATTAGTCAATT+TGG | + | chr1_1:58921282-58921301 | Msa0032010:intron | 35.0% | |
| ! | ATTTTCCACTCGAGTTAGTT+AGG | + | chr1_1:58921376-58921395 | Msa0032010:intron | 35.0% |
| TTTAACCTAACTAACTCGAG+TGG | - | chr1_1:58921384-58921403 | None:intergenic | 35.0% | |
| ACTTGATGAGAAGGAATTTG+GGG | + | chr1_1:58921479-58921498 | Msa0032010:CDS | 35.0% | |
| AGTTCGGTTTAGTTACCAAA+AGG | - | chr1_1:58921563-58921582 | None:intergenic | 35.0% | |
| ! | TGGTAACTAAACCGAACTTT+TGG | + | chr1_1:58921565-58921584 | Msa0032010:intron | 35.0% |
| TTATCTTTACCATCAGCATC+TGG | - | chr1_1:58921725-58921744 | None:intergenic | 35.0% | |
| AAAATGCTTGTGTACAAGAG+TGG | + | chr1_1:58921815-58921834 | Msa0032010:CDS | 35.0% | |
| TGCGGTACTTACATCATAAA+GGG | - | chr1_1:58921867-58921886 | None:intergenic | 35.0% | |
| ATGCGGTACTTACATCATAA+AGG | - | chr1_1:58921868-58921887 | None:intergenic | 35.0% | |
| GTTAATGCATTGCTTGACTA+TGG | + | chr1_1:58922495-58922514 | Msa0032010:intron | 35.0% | |
| !!! | CAAAAGTTTTGTTCTGCACT+TGG | + | chr1_1:58922631-58922650 | Msa0032010:CDS | 35.0% |
| !!! | AAAGTTTTGTTCTGCACTTG+GGG | + | chr1_1:58922633-58922652 | Msa0032010:CDS | 35.0% |
| TAAACGGAAAACGGAGAAAG+AGG | - | chr1_1:58919307-58919326 | None:intergenic | 40.0% | |
| TGCCAAAGGTAGAAGTTAAG+AGG | + | chr1_1:58919646-58919665 | Msa0032010:CDS | 40.0% | |
| CATATACATTGTGACGTCGA+AGG | - | chr1_1:58919982-58920001 | None:intergenic | 40.0% | |
| TGTAGGAGAATGCGATGAAT+AGG | + | chr1_1:58920099-58920118 | Msa0032010:intron | 40.0% | |
| CTCAATTGCTCATCTCCATT+AGG | - | chr1_1:58920401-58920420 | None:intergenic | 40.0% | |
| CTAATGGAGATGAGCAATTG+AGG | + | chr1_1:58920399-58920418 | Msa0032010:intron | 40.0% | |
| !! | TCTGCTTTTGCAGAGATCTA+AGG | + | chr1_1:58920648-58920667 | Msa0032010:intron | 40.0% |
| CTACTCCTGCTTTAGCAAAA+AGG | - | chr1_1:58920681-58920700 | None:intergenic | 40.0% | |
| GCACCAAAAGCAATTTGTGA+AGG | - | chr1_1:58920760-58920779 | None:intergenic | 40.0% | |
| !! | TCACAAATTGCTTTTGGTGC+TGG | + | chr1_1:58920760-58920779 | Msa0032010:CDS | 40.0% |
| TCAATGGTATGTCTCCATCA+AGG | + | chr1_1:58920848-58920867 | Msa0032010:intron | 40.0% | |
| GCAGCGAGAGTAAATTATTG+TGG | - | chr1_1:58920894-58920913 | None:intergenic | 40.0% | |
| ACTTGCAGTTACACACACAT+AGG | - | chr1_1:58921061-58921080 | None:intergenic | 40.0% | |
| ATCCAATAGTTCATCCCTTG+AGG | + | chr1_1:58921145-58921164 | Msa0032010:CDS | 40.0% | |
| TTCCTCAAGGGATGAACTAT+TGG | - | chr1_1:58921150-58921169 | None:intergenic | 40.0% | |
| CCTGAATATGGTTTCCTCAA+GGG | - | chr1_1:58921162-58921181 | None:intergenic | 40.0% | |
| AGGATTCCTGGAATTTACCT+GGG | - | chr1_1:58921188-58921207 | None:intergenic | 40.0% | |
| TAATTGGGATTGCTCAACTC+TGG | - | chr1_1:58921275-58921294 | None:intergenic | 40.0% | |
| TGCGCTTTCATCATAAGTTC+TGG | - | chr1_1:58921517-58921536 | None:intergenic | 40.0% | |
| !! | GTTTTGAGCAAATTGTTGGC+AGG | + | chr1_1:58921634-58921653 | Msa0032010:intron | 40.0% |
| ! | ATTTTGCCAATTAAGCCAGG+TGG | - | chr1_1:58921800-58921819 | None:intergenic | 40.0% |
| ! | AGCATTTTGCCAATTAAGCC+AGG | - | chr1_1:58921803-58921822 | None:intergenic | 40.0% |
| GGTAAAGTTAAGCTGAAGCT+TGG | + | chr1_1:58921836-58921855 | Msa0032010:CDS | 40.0% | |
| AAAGTATGTGAGATGCCTAG+AGG | + | chr1_1:58922188-58922207 | Msa0032010:intron | 40.0% | |
| AGTTAGTCGTGGTCAAATGA+TGG | + | chr1_1:58922405-58922424 | Msa0032010:intron | 40.0% | |
| ! | TGATGGATGATGCAATAGAG+AGG | + | chr1_1:58922422-58922441 | Msa0032010:intron | 40.0% |
| ATGCAATAGAGAGGTGGAAT+GGG | + | chr1_1:58922431-58922450 | Msa0032010:intron | 40.0% | |
| AAAATGGTTGCAGGTTTCCT+CGG | + | chr1_1:58922561-58922580 | Msa0032010:intron | 40.0% | |
| GTGTGATGATCGGAAAAGGA+GGG | - | chr1_1:58919261-58919280 | None:intergenic | 45.0% | |
| ! | CTCCTTTTCCGATCATCACA+CGG | + | chr1_1:58919260-58919279 | Msa0032010:five_prime_UTR | 45.0% |
| AAAGCCTCCTCAACGAAGAA+AGG | + | chr1_1:58919486-58919505 | Msa0032010:CDS | 45.0% | |
| CAAACCTTTCTTCGTTGAGG+AGG | - | chr1_1:58919493-58919512 | None:intergenic | 45.0% | |
| ACTTCTACCTTTGGCACTCT+AGG | - | chr1_1:58919642-58919661 | None:intergenic | 45.0% | |
| TTCAAATTCCGCTACACTGC+AGG | + | chr1_1:58919829-58919848 | Msa0032010:intron | 45.0% | |
| TTTCTGCAGCGAAGTTGTTG+AGG | + | chr1_1:58919919-58919938 | Msa0032010:intron | 45.0% | |
| ! | GATGCCCTTTTTGCTAAAGC+AGG | + | chr1_1:58920673-58920692 | Msa0032010:intron | 45.0% |
| !!! | CAAATTGCTTTTGGTGCTGG+AGG | + | chr1_1:58920763-58920782 | Msa0032010:CDS | 45.0% |
| TCACTCTGTACACTTACCCA+TGG | - | chr1_1:58920989-58921008 | None:intergenic | 45.0% | |
| CCCTTGAGGAAACCATATTC+AGG | + | chr1_1:58921159-58921178 | Msa0032010:CDS | 45.0% | |
| GCCTGAATATGGTTTCCTCA+AGG | - | chr1_1:58921163-58921182 | None:intergenic | 45.0% | |
| AAACCATATTCAGGCAACCC+AGG | + | chr1_1:58921168-58921187 | Msa0032010:CDS | 45.0% | |
| TTACCTGGGTTGCCTGAATA+TGG | - | chr1_1:58921174-58921193 | None:intergenic | 45.0% | |
| GAGGATTCCTGGAATTTACC+TGG | - | chr1_1:58921189-58921208 | None:intergenic | 45.0% | |
| TGATGAGAAGGAATTTGGGG+AGG | + | chr1_1:58921482-58921501 | Msa0032010:CDS | 45.0% | |
| TTGAGCAAATTGTTGGCAGG+AGG | + | chr1_1:58921637-58921656 | Msa0032010:intron | 45.0% | |
| CTCTAGACATCTAAGCCTCT+AGG | - | chr1_1:58922206-58922225 | None:intergenic | 45.0% | |
| TGGATGATGCAATAGAGAGG+TGG | + | chr1_1:58922425-58922444 | Msa0032010:intron | 45.0% | |
| GATGCAATAGAGAGGTGGAA+TGG | + | chr1_1:58922430-58922449 | Msa0032010:intron | 45.0% | |
| TGCAATAGAGAGGTGGAATG+GGG | + | chr1_1:58922432-58922451 | Msa0032010:intron | 45.0% | |
| AAATGGTTGCAGGTTTCCTC+GGG | + | chr1_1:58922562-58922581 | Msa0032010:intron | 45.0% | |
| !! | CAAGTTTGCTACTGTAACCC+CGG | + | chr1_1:58922663-58922682 | Msa0032010:CDS | 45.0% |
| !!! | TATATTTATTATATTTTTGT+AGG | + | chr1_1:58920082-58920101 | Msa0032010:intron | 5.0% |
| !!! | TTTTTGTTATTTTTTTAAAA+TGG | + | chr1_1:58922545-58922564 | Msa0032010:intron | 5.0% |
| CGTGTGATGATCGGAAAAGG+AGG | - | chr1_1:58919262-58919281 | None:intergenic | 50.0% | |
| CACCGTGTGATGATCGGAAA+AGG | - | chr1_1:58919265-58919284 | None:intergenic | 50.0% | |
| ! | CTTTTCCGATCATCACACGG+TGG | + | chr1_1:58919263-58919282 | Msa0032010:five_prime_UTR | 50.0% |
| GGAAACCACCGTGTGATGAT+CGG | - | chr1_1:58919271-58919290 | None:intergenic | 50.0% | |
| GATCATCACACGGTGGTTTC+CGG | + | chr1_1:58919270-58919289 | Msa0032010:five_prime_UTR | 50.0% | |
| ! | ACTCTAGGAGGTGGAGCTTT+AGG | - | chr1_1:58919627-58919646 | None:intergenic | 50.0% |
| TCTACCTTTGGCACTCTAGG+AGG | - | chr1_1:58919639-58919658 | None:intergenic | 50.0% | |
| TTCACTCTTGCTCCCACCTT+TGG | - | chr1_1:58920818-58920837 | None:intergenic | 50.0% | |
| TTCTTTCTCAGTCACGCCTG+TGG | - | chr1_1:58920957-58920976 | None:intergenic | 50.0% | |
| AGGCAACCCAGGTAAATTCC+AGG | + | chr1_1:58921179-58921198 | Msa0032010:intron | 50.0% | |
| ! | AGCAGTGGAGCTTGACCTTT+TGG | + | chr1_1:58921545-58921564 | Msa0032010:CDS | 50.0% |
| TGAAGAACGCACTTGCCTCT+GGG | - | chr1_1:58921667-58921686 | None:intergenic | 50.0% | |
| ATGAAGAACGCACTTGCCTC+TGG | - | chr1_1:58921668-58921687 | None:intergenic | 50.0% | |
| GATGGTAAAGATAAGCGCCC+TGG | + | chr1_1:58921731-58921750 | Msa0032010:CDS | 50.0% | |
| AAGTTGAACGACTTGCCACC+TGG | + | chr1_1:58921782-58921801 | Msa0032010:CDS | 50.0% | |
| GACTTGCCACCTGGCTTAAT+TGG | + | chr1_1:58921791-58921810 | Msa0032010:CDS | 50.0% | |
| ATAGAGAGGTGGAATGGGGT+AGG | + | chr1_1:58922436-58922455 | Msa0032010:intron | 50.0% | |
| TCAAGTGCGGCATCTATGTC+CGG | - | chr1_1:58922685-58922704 | None:intergenic | 50.0% | |
| ! | TTTTGACGGAGGCTTGACGC+AGG | - | chr1_1:58919208-58919227 | None:intergenic | 55.0% |
| !! | CGTGGGAGAGGAGGTTTTGA+CGG | - | chr1_1:58919222-58919241 | None:intergenic | 55.0% |
| ATCGGAAAAGGAGGGACTGC+AGG | - | chr1_1:58919253-58919272 | None:intergenic | 55.0% | |
| ! | TCCACCTCCTAGAGTGCCAA+AGG | + | chr1_1:58919632-58919651 | Msa0032010:CDS | 55.0% |
| ! | ACCTTTGGCACTCTAGGAGG+TGG | - | chr1_1:58919636-58919655 | None:intergenic | 55.0% |
| GCTATAGGCCTGCAGTGTAG+CGG | - | chr1_1:58919840-58919859 | None:intergenic | 55.0% | |
| CTGCAGCGAAGTTGTTGAGG+AGG | + | chr1_1:58919922-58919941 | Msa0032010:intron | 55.0% | |
| AGTCGCTGCAAAAGGGGTTC+AGG | + | chr1_1:58919952-58919971 | Msa0032010:CDS | 55.0% | |
| AAGCGCAGCAAGTTCAGCAG+TGG | + | chr1_1:58921530-58921549 | Msa0032010:CDS | 55.0% | |
| TTGGCAGGAGGAAAACCCAG+AGG | + | chr1_1:58921649-58921668 | Msa0032010:intron | 55.0% | |
| GGTAAAGATAAGCGCCCTGG+AGG | + | chr1_1:58921734-58921753 | Msa0032010:CDS | 55.0% | |
| AAGCGCCCTGGAGGTTATAG+AGG | + | chr1_1:58921743-58921762 | Msa0032010:CDS | 55.0% | |
| CCGCACCTCTATAACCTCCA+GGG | - | chr1_1:58921751-58921770 | None:intergenic | 55.0% | |
| CCCTGGAGGTTATAGAGGTG+CGG | + | chr1_1:58921748-58921767 | Msa0032010:CDS | 55.0% | |
| GGGGTAGGCTAGGCTATTCA+TGG | + | chr1_1:58922451-58922470 | Msa0032010:intron | 55.0% | |
| AAGTGCGGCATCTATGTCCG+GGG | - | chr1_1:58922683-58922702 | None:intergenic | 55.0% | |
| CAAGTGCGGCATCTATGTCC+GGG | - | chr1_1:58922684-58922703 | None:intergenic | 55.0% | |
| !! | GGGAGAGGAGGTTTTGACGG+AGG | - | chr1_1:58919219-58919238 | None:intergenic | 60.0% |
| GACTGCAGGCGGAAAGACGT+GGG | - | chr1_1:58919239-58919258 | None:intergenic | 60.0% | |
| GGAAAAGGAGGGACTGCAGG+CGG | - | chr1_1:58919250-58919269 | None:intergenic | 60.0% | |
| GCCGCACCTCTATAACCTCC+AGG | - | chr1_1:58921752-58921771 | None:intergenic | 60.0% | |
| ! | ATAGAGGTGCGGCGAAGCTC+TGG | + | chr1_1:58921759-58921778 | Msa0032010:CDS | 60.0% |
| GAGGTGGAATGGGGTAGGCT+AGG | + | chr1_1:58922441-58922460 | Msa0032010:intron | 60.0% | |
| CGGAGGCTTGACGCAGGAGA+CGG | - | chr1_1:58919202-58919221 | None:intergenic | 65.0% | |
| GCGGAAAGACGTGGGAGAGG+AGG | - | chr1_1:58919231-58919250 | None:intergenic | 65.0% | |
| CAGGCGGAAAGACGTGGGAG+AGG | - | chr1_1:58919234-58919253 | None:intergenic | 65.0% | |
| GGACTGCAGGCGGAAAGACG+TGG | - | chr1_1:58919240-58919259 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 58919188 | 58922902 | 58919188 | ID=Msa0032010;Name=Msa0032010 |
| chr1_1 | mRNA | 58919188 | 58922902 | 58919188 | ID=Msa0032010-mRNA-1;Parent=Msa0032010;Name=Msa0032010-mRNA-1;_AED=0.13;_eAED=0.13;_QI=127|1|1|1|0.9|0.81|11|173|288 |
| chr1_1 | exon | 58919188 | 58919291 | 58919188 | ID=Msa0032010-mRNA-1:exon:18059;Parent=Msa0032010-mRNA-1 |
| chr1_1 | exon | 58919443 | 58919507 | 58919443 | ID=Msa0032010-mRNA-1:exon:18060;Parent=Msa0032010-mRNA-1 |
| chr1_1 | exon | 58919612 | 58919667 | 58919612 | ID=Msa0032010-mRNA-1:exon:18061;Parent=Msa0032010-mRNA-1 |
| chr1_1 | exon | 58919928 | 58919994 | 58919928 | ID=Msa0032010-mRNA-1:exon:18062;Parent=Msa0032010-mRNA-1 |
| chr1_1 | exon | 58920104 | 58920143 | 58920104 | ID=Msa0032010-mRNA-1:exon:18063;Parent=Msa0032010-mRNA-1 |
| chr1_1 | exon | 58920752 | 58920853 | 58920752 | ID=Msa0032010-mRNA-1:exon:18064;Parent=Msa0032010-mRNA-1 |
| chr1_1 | exon | 58920960 | 58920991 | 58920960 | ID=Msa0032010-mRNA-1:exon:18065;Parent=Msa0032010-mRNA-1 |
| chr1_1 | exon | 58921129 | 58921189 | 58921129 | ID=Msa0032010-mRNA-1:exon:18066;Parent=Msa0032010-mRNA-1 |
| chr1_1 | exon | 58921475 | 58921566 | 58921475 | ID=Msa0032010-mRNA-1:exon:18067;Parent=Msa0032010-mRNA-1 |
| chr1_1 | exon | 58921656 | 58921874 | 58921656 | ID=Msa0032010-mRNA-1:exon:18068;Parent=Msa0032010-mRNA-1 |
| chr1_1 | exon | 58922574 | 58922902 | 58922574 | ID=Msa0032010-mRNA-1:exon:18069;Parent=Msa0032010-mRNA-1 |
| chr1_1 | five_prime_UTR | 58919188 | 58919291 | 58919188 | ID=Msa0032010-mRNA-1:five_prime_utr;Parent=Msa0032010-mRNA-1 |
| chr1_1 | five_prime_UTR | 58919443 | 58919465 | 58919443 | ID=Msa0032010-mRNA-1:five_prime_utr;Parent=Msa0032010-mRNA-1 |
| chr1_1 | CDS | 58919466 | 58919507 | 58919466 | ID=Msa0032010-mRNA-1:cds;Parent=Msa0032010-mRNA-1 |
| chr1_1 | CDS | 58919612 | 58919667 | 58919612 | ID=Msa0032010-mRNA-1:cds;Parent=Msa0032010-mRNA-1 |
| chr1_1 | CDS | 58919928 | 58919994 | 58919928 | ID=Msa0032010-mRNA-1:cds;Parent=Msa0032010-mRNA-1 |
| chr1_1 | CDS | 58920104 | 58920143 | 58920104 | ID=Msa0032010-mRNA-1:cds;Parent=Msa0032010-mRNA-1 |
| chr1_1 | CDS | 58920752 | 58920853 | 58920752 | ID=Msa0032010-mRNA-1:cds;Parent=Msa0032010-mRNA-1 |
| chr1_1 | CDS | 58920960 | 58920991 | 58920960 | ID=Msa0032010-mRNA-1:cds;Parent=Msa0032010-mRNA-1 |
| chr1_1 | CDS | 58921129 | 58921189 | 58921129 | ID=Msa0032010-mRNA-1:cds;Parent=Msa0032010-mRNA-1 |
| chr1_1 | CDS | 58921475 | 58921566 | 58921475 | ID=Msa0032010-mRNA-1:cds;Parent=Msa0032010-mRNA-1 |
| chr1_1 | CDS | 58921656 | 58921874 | 58921656 | ID=Msa0032010-mRNA-1:cds;Parent=Msa0032010-mRNA-1 |
| chr1_1 | CDS | 58922574 | 58922729 | 58922574 | ID=Msa0032010-mRNA-1:cds;Parent=Msa0032010-mRNA-1 |
| chr1_1 | three_prime_UTR | 58922730 | 58922902 | 58922730 | ID=Msa0032010-mRNA-1:three_prime_utr;Parent=Msa0032010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
