Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174090 | XP_013469155.1 | 97.458 | 236 | 6 | 0 | 1 | 236 | 1 | 236 | 1.37e-166 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174090 | A0A072VP34 | 97.458 | 236 | 6 | 0 | 1 | 236 | 1 | 236 | 6.54e-167 | 469 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072420 | Msa0174090 | 0.819702 | 1.010732e-52 | -8.615850e-47 |
| Msa0081780 | Msa0174090 | 0.926739 | 3.099638e-91 | -8.615850e-47 |
| Msa0148080 | Msa0174090 | 0.802020 | 6.840146e-49 | -8.615850e-47 |
| Msa0168310 | Msa0174090 | 0.808758 | 2.646441e-50 | -8.615850e-47 |
| Msa0173690 | Msa0174090 | 0.805501 | 1.295026e-49 | -8.615850e-47 |
| Msa0174090 | Msa0240920 | 0.819094 | 1.391093e-52 | -8.615850e-47 |
| Msa0174090 | Msa0318680 | 0.801346 | 9.403862e-49 | -8.615850e-47 |
| Msa0174090 | Msa0741440 | 0.811644 | 6.313816e-51 | -8.615850e-47 |
| Msa0174090 | Msa1267970 | 0.803594 | 3.235816e-49 | -8.615850e-47 |
| Msa0174090 | Msa1341060 | 0.816855 | 4.459702e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174090 | MtrunA17_Chr1g0194401 | 96.757 | 185 | 6 | 0 | 49 | 233 | 1 | 185 | 1.71e-129 | 364 |
| Msa0174090 | MtrunA17_Chr2g0294131 | 41.232 | 211 | 98 | 6 | 9 | 217 | 7 | 193 | 4.48e-30 | 111 |
| Msa0174090 | MtrunA17_Chr4g0068671 | 33.182 | 220 | 139 | 4 | 14 | 232 | 12 | 224 | 9.18e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174090 | AT1G02380.1 | 34.404 | 218 | 106 | 8 | 10 | 218 | 8 | 197 | 8.95e-27 | 103 |
| Msa0174090 | AT3G17120.4 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.65e-18 | 80.1 |
| Msa0174090 | AT3G17120.2 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.65e-18 | 80.1 |
| Msa0174090 | AT3G17120.1 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.65e-18 | 80.1 |
| Msa0174090 | AT3G17120.5 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.65e-18 | 80.1 |
| Msa0174090 | AT3G17120.3 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.65e-18 | 80.1 |
| Msa0174090 | AT4G01960.1 | 29.493 | 217 | 125 | 7 | 9 | 218 | 8 | 203 | 9.42e-18 | 79.7 |
| Msa0174090 | AT4G01960.2 | 29.493 | 217 | 125 | 7 | 9 | 218 | 8 | 203 | 9.42e-18 | 79.7 |
| Msa0174090 | AT4G01960.3 | 30.270 | 185 | 98 | 7 | 9 | 184 | 8 | 170 | 7.33e-15 | 71.2 |
Find 56 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGACTTGTTTGGTAATTT+TGG | 0.141994 | 1_4:-59652668 | Msa0174090:three_prime_UTR |
| TCAACAATAACATCGTTTCT+AGG | 0.240162 | 1_4:-59656149 | Msa0174090:five_prime_UTR |
| GACATTGCTGATTTCTCTTA+AGG | 0.265137 | 1_4:-59652579 | Msa0174090:three_prime_UTR |
| CTAGAATTGTTGGTGGATAA+AGG | 0.283179 | 1_4:-59655599 | Msa0174090:CDS |
| GCCTCCTAGAGGTCCATCTT+TGG | 0.299097 | 1_4:-59655498 | Msa0174090:CDS |
| AAAGGTTTAGAACATGTTAA+TGG | 0.299452 | 1_4:-59655581 | Msa0174090:CDS |
| AATGGGGTTATGAATTTAGA+TGG | 0.319095 | 1_4:-59655707 | Msa0174090:CDS |
| GAACATGTTAATGGAAATCA+TGG | 0.386666 | 1_4:-59655572 | Msa0174090:CDS |
| GCCAAGTTCATCTCCATTGC+TGG | 0.397736 | 1_4:+59652969 | None:intergenic |
| AGAGATTCAACTTCAAAGAA+TGG | 0.402293 | 1_4:-59655746 | Msa0174090:CDS |
| GGTATGCAGGAAGGATGATA+TGG | 0.421288 | 1_4:-59652805 | Msa0174090:exon |
| TTCCTCGTCATCATATTTCA+CGG | 0.422957 | 1_4:-59655314 | Msa0174090:intron |
| TTCGTTCACAATGTGAGTTT+AGG | 0.431483 | 1_4:-59652762 | Msa0174090:three_prime_UTR |
| AAACTAACTGAAATTCCTAA+TGG | 0.432744 | 1_4:+59652699 | None:intergenic |
| GAATTTAGATGGATCAGAAA+AGG | 0.435059 | 1_4:-59655696 | Msa0174090:CDS |
| TTGTTGAAACATTCTTAACT+AGG | 0.456257 | 1_4:+59656165 | None:intergenic |
| AATTTAGATGGATCAGAAAA+GGG | 0.467182 | 1_4:-59655695 | Msa0174090:CDS |
| CAACAATAACATCGTTTCTA+GGG | 0.472288 | 1_4:-59656148 | Msa0174090:five_prime_UTR |
| TCTGATGCAACAGCTGACTC+AGG | 0.494621 | 1_4:+59653033 | None:intergenic |
| CTATATTGATGCAGGTATGC+AGG | 0.495267 | 1_4:-59652818 | Msa0174090:intron |
| GGGTTCTACCCTTTGACTTG+AGG | 0.495824 | 1_4:-59656128 | Msa0174090:intron |
| CTGCGAGTAGTGCGTCTGTT+GGG | 0.505670 | 1_4:-59653068 | Msa0174090:CDS |
| AGAGGTCCATCTTTGGATGC+TGG | 0.505685 | 1_4:-59655491 | Msa0174090:CDS |
| ACCAGCAATGGAGATGAACT+TGG | 0.525119 | 1_4:-59652970 | Msa0174090:CDS |
| GTTGAATTTGACATTGAAAG+TGG | 0.538098 | 1_4:-59655806 | Msa0174090:CDS |
| AAGGAGGTACCTCAAGTCAA+AGG | 0.539248 | 1_4:+59656119 | None:intergenic |
| TGCTTGTACAGTGACTTGTT+TGG | 0.541077 | 1_4:-59652677 | Msa0174090:three_prime_UTR |
| TCTGCGAGTAGTGCGTCTGT+TGG | 0.541422 | 1_4:-59653069 | Msa0174090:CDS |
| CTGATGCAACAGCTGACTCA+GGG | 0.544449 | 1_4:+59653034 | None:intergenic |
| TGATCACCAGCATCCAAAGA+TGG | 0.549760 | 1_4:+59655485 | None:intergenic |
| GCATCCAAAGATGGACCTCT+AGG | 0.550353 | 1_4:+59655494 | None:intergenic |
| ACGAACTTCAACACCAGCAA+TGG | 0.552140 | 1_4:-59652982 | Msa0174090:CDS |
| TGAATGTAATCTAGAATTGT+TGG | 0.565076 | 1_4:-59655609 | Msa0174090:CDS |
| AGGAGGTACCTCAAGTCAAA+GGG | 0.570753 | 1_4:+59656120 | None:intergenic |
| ATATACAAATCTTTCTGCCA+TGG | 0.581731 | 1_4:-59655354 | Msa0174090:CDS |
| GATGGACCTCTAGGAGGCAA+AGG | 0.587737 | 1_4:+59655503 | None:intergenic |
| TTGCGTTGAGGAAGCGTGCG+AGG | 0.596295 | 1_4:-59655436 | Msa0174090:CDS |
| TTGTTGTCTTTGATCCACCT+TGG | 0.605259 | 1_4:-59652612 | Msa0174090:three_prime_UTR |
| TTGCTGGTGTTGAAGTTCGT+AGG | 0.609539 | 1_4:+59652985 | None:intergenic |
| TTTGTATATGTCGAAGACGA+CGG | 0.611177 | 1_4:+59655368 | None:intergenic |
| ATGTAATCTAGAATTGTTGG+TGG | 0.614154 | 1_4:-59655606 | Msa0174090:CDS |
| GGACCTCTAGGAGGCAAAGG+TGG | 0.627162 | 1_4:+59655506 | None:intergenic |
| TCAGCTGTTGCATCAGACGA+AGG | 0.631536 | 1_4:-59653027 | Msa0174090:CDS |
| AGGAATGTGTTGATGCACGC+AGG | 0.636801 | 1_4:+59656185 | None:intergenic |
| ATTGATGCAGGTATGCAGGA+AGG | 0.637045 | 1_4:-59652814 | Msa0174090:intron |
| TGGTGAAAACACGAGCGAAG+AGG | 0.655654 | 1_4:-59655786 | Msa0174090:CDS |
| TACCGTGAAATATGATGACG+AGG | 0.663224 | 1_4:+59655312 | None:intergenic |
| ATAACCCCATTCCATGACCA+AGG | 0.663825 | 1_4:+59655719 | None:intergenic |
| TGGTGATCATAAATTTGTGA+AGG | 0.670977 | 1_4:-59655471 | Msa0174090:CDS |
| AAGCCACCTTTGCCTCCTAG+AGG | 0.671952 | 1_4:-59655509 | Msa0174090:CDS |
| TCCAAAGATGGACCTCTAGG+AGG | 0.675340 | 1_4:+59655497 | None:intergenic |
| AATTAGCTGAGCTTGCGTTG+AGG | 0.678634 | 1_4:-59655448 | Msa0174090:CDS |
| TAAACTCACATTGTGAACGA+AGG | 0.687000 | 1_4:+59652764 | None:intergenic |
| TGTCATCATCATCACCAAGG+TGG | 0.692675 | 1_4:+59652598 | None:intergenic |
| TGATGCAACAGCTGACTCAG+GGG | 0.699610 | 1_4:+59653035 | None:intergenic |
| CAATGTCATCATCATCACCA+AGG | 0.699988 | 1_4:+59652595 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAAAAATTGAATCTT+TGG | - | chr1_4:59652887-59652906 | Msa0174090:intron | 10.0% |
| !! | TTATTCATAATTACTTAAAT+AGG | - | chr1_4:59655203-59655222 | Msa0174090:intron | 10.0% |
| !! | TAAAAAAAGACAAGAATTTA+AGG | + | chr1_4:59652626-59652645 | None:intergenic | 15.0% |
| !! | AAAAAGTAAAAAGTTTGTAT+AGG | + | chr1_4:59654163-59654182 | None:intergenic | 15.0% |
| !!! | TCGTTTTTTCAAATTATTAT+CGG | - | chr1_4:59655499-59655518 | Msa0174090:CDS | 15.0% |
| !! | AAAAGAAGATGAAGAAAAAA+GGG | + | chr1_4:59652790-59652809 | None:intergenic | 20.0% |
| !!! | TTGAAATTGATTTGATTAGA+TGG | - | chr1_4:59653017-59653036 | Msa0174090:CDS | 20.0% |
| !!! | TGAAATTGATTTGATTAGAT+GGG | - | chr1_4:59653018-59653037 | Msa0174090:CDS | 20.0% |
| !! | AATACAAAAGATTACGTATA+TGG | + | chr1_4:59653734-59653753 | None:intergenic | 20.0% |
| !! | TACAAATACAATTGAATTCT+AGG | + | chr1_4:59653953-59653972 | None:intergenic | 20.0% |
| !!! | TTACTTTTTCAACTCTTATA+AGG | - | chr1_4:59654174-59654193 | Msa0174090:intron | 20.0% |
| !!! | TCCTTTATAAATTTTCATTG+TGG | - | chr1_4:59654632-59654651 | Msa0174090:intron | 20.0% |
| !! | ACCACAATGAAAATTTATAA+AGG | + | chr1_4:59654636-59654655 | None:intergenic | 20.0% |
| !!! | TATGAAATAGACTTTTAAAC+AGG | + | chr1_4:59654920-59654939 | None:intergenic | 20.0% |
| !! | TGGGAAAAATTATGTATATA+TGG | - | chr1_4:59655986-59656005 | Msa0174090:intron | 20.0% |
| !!! | TGGCAATGTTTTTTAAAAAA+AGG | - | chr1_4:59656230-59656249 | Msa0174090:five_prime_UTR | 20.0% |
| !!! | AGGTTTTTCGGTTTTATTAA+TGG | + | chr1_4:59652606-59652625 | None:intergenic | 25.0% |
| !!! | GACAAGAATTTAAGGTTTTT+CGG | + | chr1_4:59652618-59652637 | None:intergenic | 25.0% |
| ! | TTGTTGAAACATTCTTAACT+AGG | + | chr1_4:59652716-59652735 | None:intergenic | 25.0% |
| ! | AAAGAAGATGAAGAAAAAAG+GGG | + | chr1_4:59652789-59652808 | None:intergenic | 25.0% |
| ! | GAAAAGAAGATGAAGAAAAA+AGG | + | chr1_4:59652791-59652810 | None:intergenic | 25.0% |
| ! | TCAAAGAGAAAAAGAAAAAG+AGG | - | chr1_4:59653050-59653069 | Msa0174090:CDS | 25.0% |
| ! | AATTTAGATGGATCAGAAAA+GGG | - | chr1_4:59653183-59653202 | Msa0174090:intron | 25.0% |
| !! | TCAAATTCTTGTGATGTTTT+TGG | - | chr1_4:59653240-59653259 | Msa0174090:intron | 25.0% |
| !! | TGAATGTAATCTAGAATTGT+TGG | - | chr1_4:59653269-59653288 | Msa0174090:intron | 25.0% |
| !! | AAAGGTTTAGAACATGTTAA+TGG | - | chr1_4:59653297-59653316 | Msa0174090:intron | 25.0% |
| !! | TAAATTACATGTTCTTTTGC+TGG | - | chr1_4:59653587-59653606 | Msa0174090:intron | 25.0% |
| !! | AAATTACATGTTCTTTTGCT+GGG | - | chr1_4:59653588-59653607 | Msa0174090:intron | 25.0% |
| ! | GTTCATATATATTTCACATG+CGG | - | chr1_4:59653837-59653856 | Msa0174090:intron | 25.0% |
| !!! | TTTTGAAATCAAATCTGCAT+AGG | - | chr1_4:59654221-59654240 | Msa0174090:intron | 25.0% |
| !!! | TTAGTTGTTTTATAGCTATG+AGG | - | chr1_4:59654376-59654395 | Msa0174090:intron | 25.0% |
| !!! | TAGTTGTTTTATAGCTATGA+GGG | - | chr1_4:59654377-59654396 | Msa0174090:intron | 25.0% |
| ! | GAAATGATTATTCAGTATCA+GGG | + | chr1_4:59654407-59654426 | None:intergenic | 25.0% |
| ! | TGAAATGATTATTCAGTATC+AGG | + | chr1_4:59654408-59654427 | None:intergenic | 25.0% |
| ! | CGAATGTACATTATATCATA+AGG | - | chr1_4:59654455-59654474 | Msa0174090:intron | 25.0% |
| !! | ATAATCAACATGAGTTTTCA+GGG | - | chr1_4:59655022-59655041 | Msa0174090:intron | 25.0% |
| ! | TCATAATTACTTAAATAGGC+CGG | - | chr1_4:59655207-59655226 | Msa0174090:intron | 25.0% |
| !! | AAAAGCCTATTTAGCTTAAT+AGG | + | chr1_4:59655275-59655294 | None:intergenic | 25.0% |
| !!! | GCTTTTTTCTTAAATAGAGA+AGG | + | chr1_4:59655311-59655330 | None:intergenic | 25.0% |
| ! | TCAGTTAATTCAAACTCAAT+TGG | - | chr1_4:59655678-59655697 | Msa0174090:CDS | 25.0% |
| ! | TATATAATCGAATACACACT+TGG | + | chr1_4:59655944-59655963 | None:intergenic | 25.0% |
| ! | AAACTAACTGAAATTCCTAA+TGG | + | chr1_4:59656182-59656201 | None:intergenic | 25.0% |
| CAAAAAGAGAGAAAAACCAT+TGG | - | chr1_4:59652580-59652599 | Msa0174090:three_prime_UTR | 30.0% | |
| TCAACAATAACATCGTTTCT+AGG | - | chr1_4:59652729-59652748 | Msa0174090:three_prime_UTR | 30.0% | |
| CAACAATAACATCGTTTCTA+GGG | - | chr1_4:59652730-59652749 | Msa0174090:three_prime_UTR | 30.0% | |
| AAGAAGATGAAGAAAAAAGG+GGG | + | chr1_4:59652788-59652807 | None:intergenic | 30.0% | |
| !!! | GGGTTTTGTTTTTGAGTAAT+TGG | - | chr1_4:59652924-59652943 | Msa0174090:intron | 30.0% |
| TCTTTAGCATGATTATGAGA+TGG | - | chr1_4:59652975-59652994 | Msa0174090:CDS | 30.0% | |
| CTTTAGCATGATTATGAGAT+GGG | - | chr1_4:59652976-59652995 | Msa0174090:CDS | 30.0% | |
| GTTGAATTTGACATTGAAAG+TGG | - | chr1_4:59653072-59653091 | Msa0174090:CDS | 30.0% | |
| AGAGATTCAACTTCAAAGAA+TGG | - | chr1_4:59653132-59653151 | Msa0174090:intron | 30.0% | |
| AATGGGGTTATGAATTTAGA+TGG | - | chr1_4:59653171-59653190 | Msa0174090:intron | 30.0% | |
| GAATTTAGATGGATCAGAAA+AGG | - | chr1_4:59653182-59653201 | Msa0174090:intron | 30.0% | |
| ! | ATGTAATCTAGAATTGTTGG+TGG | - | chr1_4:59653272-59653291 | Msa0174090:intron | 30.0% |
| GAACATGTTAATGGAAATCA+TGG | - | chr1_4:59653306-59653325 | Msa0174090:intron | 30.0% | |
| TGGTGATCATAAATTTGTGA+AGG | - | chr1_4:59653407-59653426 | Msa0174090:intron | 30.0% | |
| ATATACAAATCTTTCTGCCA+TGG | - | chr1_4:59653524-59653543 | Msa0174090:intron | 30.0% | |
| GAAAAAAATAGTGATGACCA+TGG | + | chr1_4:59653544-59653563 | None:intergenic | 30.0% | |
| TGATATAGAACACAAGAATC+AGG | + | chr1_4:59653899-59653918 | None:intergenic | 30.0% | |
| ! | AATTCTTGTGTTAAGTTGCA+AGG | - | chr1_4:59653924-59653943 | Msa0174090:intron | 30.0% |
| TTCTGCTACATCTCAAAATA+TGG | - | chr1_4:59653994-59654013 | Msa0174090:intron | 30.0% | |
| CTTAAGATTGATGTTAGTTG+TGG | + | chr1_4:59654036-59654055 | None:intergenic | 30.0% | |
| TCTATATCTATGTGATGACT+AGG | + | chr1_4:59654103-59654122 | None:intergenic | 30.0% | |
| TAGTCATCACATAGATATAG+AGG | - | chr1_4:59654102-59654121 | Msa0174090:intron | 30.0% | |
| TAGATATAGAGGATATCACT+TGG | - | chr1_4:59654113-59654132 | Msa0174090:intron | 30.0% | |
| AGATATAGAGGATATCACTT+GGG | - | chr1_4:59654114-59654133 | Msa0174090:intron | 30.0% | |
| TCATTTCACATTATACAGAG+TGG | - | chr1_4:59654420-59654439 | Msa0174090:intron | 30.0% | |
| !! | ATTATACAGAGTGGATTTTG+TGG | - | chr1_4:59654429-59654448 | Msa0174090:intron | 30.0% |
| GTAATTCACAATTACAGAAG+TGG | + | chr1_4:59654515-59654534 | None:intergenic | 30.0% | |
| TGTTCAATCAAGATTGAAGA+AGG | + | chr1_4:59654537-59654556 | None:intergenic | 30.0% | |
| ! | GATAATCAACATGAGTTTTC+AGG | - | chr1_4:59655021-59655040 | Msa0174090:intron | 30.0% |
| !! | ATAGGCTTTTAAAAAAGCCT+AGG | - | chr1_4:59655285-59655304 | Msa0174090:intron | 30.0% |
| CTCTATTTAAGAAAAAAGCC+TGG | - | chr1_4:59655312-59655331 | Msa0174090:intron | 30.0% | |
| TTTATCCTTATCGTTGCATA+GGG | + | chr1_4:59655401-59655420 | None:intergenic | 30.0% | |
| TGATTGAATGTAACATGTGT+CGG | + | chr1_4:59655476-59655495 | None:intergenic | 30.0% | |
| TGTGTTTCATAGAGGATAAT+TGG | - | chr1_4:59655566-59655585 | Msa0174090:CDS | 30.0% | |
| TCATTTGTCTATATTGATGC+AGG | - | chr1_4:59656052-59656071 | Msa0174090:intron | 30.0% | |
| !!! | AGTGACTTGTTTGGTAATTT+TGG | - | chr1_4:59656210-59656229 | Msa0174090:five_prime_UTR | 30.0% |
| !!! | TCGGTTTTATTAATGGCCAA+TGG | + | chr1_4:59652599-59652618 | None:intergenic | 35.0% |
| AGAAGATGAAGAAAAAAGGG+GGG | + | chr1_4:59652787-59652806 | None:intergenic | 35.0% | |
| TCTTTGGCATGATTGTGAAA+TGG | - | chr1_4:59652903-59652922 | Msa0174090:intron | 35.0% | |
| CTTTGGCATGATTGTGAAAT+GGG | - | chr1_4:59652904-59652923 | Msa0174090:intron | 35.0% | |
| ! | CTTCAAAGAATGGTTTTCCT+TGG | - | chr1_4:59653142-59653161 | Msa0174090:intron | 35.0% |
| GGATCAGAAAAGGGTAAAAA+TGG | - | chr1_4:59653192-59653211 | Msa0174090:intron | 35.0% | |
| ! | CTAGAATTGTTGGTGGATAA+AGG | - | chr1_4:59653279-59653298 | Msa0174090:intron | 35.0% |
| TTTGTATATGTCGAAGACGA+CGG | + | chr1_4:59653513-59653532 | None:intergenic | 35.0% | |
| TTCCTCGTCATCATATTTCA+CGG | - | chr1_4:59653564-59653583 | Msa0174090:intron | 35.0% | |
| !! | TGAGCATTGATTACAGCATA+TGG | + | chr1_4:59653622-59653641 | None:intergenic | 35.0% |
| TGCTGTAATCAATGCTCATT+TGG | - | chr1_4:59653624-59653643 | Msa0174090:intron | 35.0% | |
| CATATGCTTGCATCTCAAAT+TGG | - | chr1_4:59653701-59653720 | Msa0174090:intron | 35.0% | |
| GATATAGAGGATATCACTTG+GGG | - | chr1_4:59654115-59654134 | Msa0174090:intron | 35.0% | |
| CATTTGTCTTGAATCTGCAA+TGG | - | chr1_4:59654345-59654364 | Msa0174090:intron | 35.0% | |
| !! | AAAGAGTATCAACAAGTCCT+TGG | + | chr1_4:59654589-59654608 | None:intergenic | 35.0% |
| GTCCTTTATGCTACAACTTT+AGG | + | chr1_4:59654683-59654702 | None:intergenic | 35.0% | |
| GCATAAAGGACACTAACATA+TGG | - | chr1_4:59654692-59654711 | Msa0174090:intron | 35.0% | |
| TACTACTTTGTTGAAGTGGA+TGG | - | chr1_4:59654718-59654737 | Msa0174090:intron | 35.0% | |
| ACTACTTTGTTGAAGTGGAT+GGG | - | chr1_4:59654719-59654738 | Msa0174090:intron | 35.0% | |
| ! | GCTTAGGCCTTCTAAAAAAT+TGG | + | chr1_4:59654791-59654810 | None:intergenic | 35.0% |
| ! | GCTTAGGCCTTCTAAAAAAT+TGG | + | chr1_4:59654791-59654810 | None:intergenic | 35.0% |
| CTAAAAAGTAAGCCTATGAC+AGG | + | chr1_4:59654856-59654875 | None:intergenic | 35.0% | |
| !!! | CTGTCATAGGCTTACTTTTT+AGG | - | chr1_4:59654854-59654873 | Msa0174090:intron | 35.0% |
| !! | AAAAGCCTTTTTGGCCTATT+AGG | + | chr1_4:59655233-59655252 | None:intergenic | 35.0% |
| ! | AGCCATTCAAAAAGCCTTTT+TGG | + | chr1_4:59655242-59655261 | None:intergenic | 35.0% |
| TTCTTAAATAGAGAAGGCCT+AGG | + | chr1_4:59655305-59655324 | None:intergenic | 35.0% | |
| TTTAAGAAAAAAGCCTGGCA+TGG | - | chr1_4:59655317-59655336 | Msa0174090:CDS | 35.0% | |
| GTTTATCCTTATCGTTGCAT+AGG | + | chr1_4:59655402-59655421 | None:intergenic | 35.0% | |
| ! | ACAGCTTCAATCAAAAGTGT+AGG | + | chr1_4:59655434-59655453 | None:intergenic | 35.0% |
| TAGAGGATAATTGGATGTCT+AGG | - | chr1_4:59655575-59655594 | Msa0174090:CDS | 35.0% | |
| CAATGTCAGATGAGTTTGAT+AGG | + | chr1_4:59655622-59655641 | None:intergenic | 35.0% | |
| TAAACTCACATTGTGAACGA+AGG | + | chr1_4:59656117-59656136 | None:intergenic | 35.0% | |
| TTCGTTCACAATGTGAGTTT+AGG | - | chr1_4:59656116-59656135 | Msa0174090:intron | 35.0% | |
| !! | GACATTGCTGATTTCTCTTA+AGG | - | chr1_4:59656299-59656318 | Msa0174090:five_prime_UTR | 35.0% |
| ! | AGAATGGTTTTCCTTGGTCA+TGG | - | chr1_4:59653148-59653167 | Msa0174090:intron | 40.0% |
| ! | GTTTTCCTTGGTCATGGAAT+GGG | - | chr1_4:59653154-59653173 | Msa0174090:intron | 40.0% |
| ! | TTTTCCTTGGTCATGGAATG+GGG | - | chr1_4:59653155-59653174 | Msa0174090:intron | 40.0% |
| ! | TACCGTGAAATATGATGACG+AGG | + | chr1_4:59653569-59653588 | None:intergenic | 40.0% |
| AGAAACTTACTACAGTGCCA+AGG | - | chr1_4:59654569-59654588 | Msa0174090:intron | 40.0% | |
| ! | TGTTGTCTTTCTGCTCTGAA+AGG | - | chr1_4:59654656-59654675 | Msa0174090:intron | 40.0% |
| !! | GTTGTCTTTCTGCTCTGAAA+GGG | - | chr1_4:59654657-59654676 | Msa0174090:intron | 40.0% |
| GGCCTAAAGTTGTAGCATAA+AGG | - | chr1_4:59654678-59654697 | Msa0174090:intron | 40.0% | |
| GTCGTACTACTTTGTTGAAG+TGG | - | chr1_4:59654714-59654733 | Msa0174090:intron | 40.0% | |
| TTGTTGAAGTGGATGGGAAT+AGG | - | chr1_4:59654725-59654744 | Msa0174090:intron | 40.0% | |
| ! | TTCTAAAAAATTGGCAGGCC+AGG | + | chr1_4:59654782-59654801 | None:intergenic | 40.0% |
| !!! | TGGCCTGCCAATTTTTTAGA+AGG | - | chr1_4:59654781-59654800 | Msa0174090:intron | 40.0% |
| ! | AGGCCTTCTAAAAAATTGGC+AGG | + | chr1_4:59654787-59654806 | None:intergenic | 40.0% |
| !!! | TTTTTTAGAAGGCCTAAGCC+TGG | - | chr1_4:59654792-59654811 | Msa0174090:intron | 40.0% |
| ! | TTCTAAAAAATTGGCAGGCC+AGG | + | chr1_4:59654782-59654801 | None:intergenic | 40.0% |
| !!! | TGGCCTGCCAATTTTTTAGA+AGG | - | chr1_4:59654781-59654800 | Msa0174090:intron | 40.0% |
| ! | AGGCCTTCTAAAAAATTGGC+AGG | + | chr1_4:59654787-59654806 | None:intergenic | 40.0% |
| !!! | TTTTTTAGAAGGCCTAAGCC+TGG | - | chr1_4:59654792-59654811 | Msa0174090:intron | 40.0% |
| ! | AGACTTTTAAACAGGCTAGC+AGG | + | chr1_4:59654912-59654931 | None:intergenic | 40.0% |
| ! | GGCCAAAAAGGCTTTTTGAA+TGG | - | chr1_4:59655237-59655256 | Msa0174090:intron | 40.0% |
| ! | AAGGCTTTTTGAATGGCTTG+TGG | - | chr1_4:59655244-59655263 | Msa0174090:intron | 40.0% |
| ! | CCTATTTAGCTTAATAGGCC+AGG | + | chr1_4:59655270-59655289 | None:intergenic | 40.0% |
| CCTGGCCTATTAAGCTAAAT+AGG | - | chr1_4:59655267-59655286 | Msa0174090:intron | 40.0% | |
| TCCATGTCTGTGTTTCATAG+AGG | - | chr1_4:59655558-59655577 | Msa0174090:CDS | 40.0% | |
| TCCTCTATGAAACACAGACA+TGG | + | chr1_4:59655562-59655581 | None:intergenic | 40.0% | |
| TTAGCTCAGACTTTCCTTTC+AGG | - | chr1_4:59655779-59655798 | Msa0174090:CDS | 40.0% | |
| TCGCAGATTTGATTCCTGAA+AGG | + | chr1_4:59655796-59655815 | None:intergenic | 40.0% | |
| ! | TCTTTTCCAAAGCTGTGCAA+TGG | - | chr1_4:59655966-59655985 | Msa0174090:intron | 40.0% |
| ! | CTTTTCCAAAGCTGTGCAAT+GGG | - | chr1_4:59655967-59655986 | Msa0174090:intron | 40.0% |
| ! | TTTTTCCCATTGCACAGCTT+TGG | + | chr1_4:59655975-59655994 | None:intergenic | 40.0% |
| CTATATTGATGCAGGTATGC+AGG | - | chr1_4:59656060-59656079 | Msa0174090:intron | 40.0% | |
| ! | TGTGCTTTTGTACAGCCATT+AGG | - | chr1_4:59656164-59656183 | Msa0174090:five_prime_UTR | 40.0% |
| !! | TGCTTGTACAGTGACTTGTT+TGG | - | chr1_4:59656201-59656220 | Msa0174090:five_prime_UTR | 40.0% |
| TTGTTGTCTTTGATCCACCT+TGG | - | chr1_4:59656266-59656285 | Msa0174090:five_prime_UTR | 40.0% | |
| CAATGTCATCATCATCACCA+AGG | + | chr1_4:59656286-59656305 | None:intergenic | 40.0% | |
| !! | AGGAGGTACCTCAAGTCAAA+GGG | + | chr1_4:59652761-59652780 | None:intergenic | 45.0% |
| !! | AAGGAGGTACCTCAAGTCAA+AGG | + | chr1_4:59652762-59652781 | None:intergenic | 45.0% |
| TGAAGAAAAAAGGGGGGTCA+AGG | + | chr1_4:59652781-59652800 | None:intergenic | 45.0% | |
| ! | GGTTTTCCTTGGTCATGGAA+TGG | - | chr1_4:59653153-59653172 | Msa0174090:intron | 45.0% |
| ATAACCCCATTCCATGACCA+AGG | + | chr1_4:59653162-59653181 | None:intergenic | 45.0% | |
| TGATCACCAGCATCCAAAGA+TGG | + | chr1_4:59653396-59653415 | None:intergenic | 45.0% | |
| AATTAGCTGAGCTTGCGTTG+AGG | - | chr1_4:59653430-59653449 | Msa0174090:intron | 45.0% | |
| TAGCATAGAGCTGCCTGTAT+CGG | - | chr1_4:59653802-59653821 | Msa0174090:intron | 45.0% | |
| CATGCGGCTCTTCTAACATT+TGG | - | chr1_4:59653853-59653872 | Msa0174090:intron | 45.0% | |
| AAGCCTTACAAAGCCTAGCT+CGG | + | chr1_4:59654756-59654775 | None:intergenic | 45.0% | |
| !!! | TTACTTTTTAGGCCTGAGCC+TGG | - | chr1_4:59654865-59654884 | Msa0174090:intron | 45.0% |
| CTTAAATAGGCCGGCCTAAT+AGG | - | chr1_4:59655216-59655235 | Msa0174090:intron | 45.0% | |
| !! | TTTTTGAATGGCTTGTGGCC+TGG | - | chr1_4:59655249-59655268 | Msa0174090:intron | 45.0% |
| CCTTATCGTTGCATAGGGAT+GGG | + | chr1_4:59655396-59655415 | None:intergenic | 45.0% | |
| TCCTTATCGTTGCATAGGGA+TGG | + | chr1_4:59655397-59655416 | None:intergenic | 45.0% | |
| ACGACACGACACTAACACAT+CGG | + | chr1_4:59655527-59655546 | None:intergenic | 45.0% | |
| ! | TTGCTGGTGTTGAAGTTCGT+AGG | + | chr1_4:59655896-59655915 | None:intergenic | 45.0% |
| ACGAACTTCAACACCAGCAA+TGG | - | chr1_4:59655896-59655915 | Msa0174090:intron | 45.0% | |
| ACCAGCAATGGAGATGAACT+TGG | - | chr1_4:59655908-59655927 | Msa0174090:intron | 45.0% | |
| ATTGATGCAGGTATGCAGGA+AGG | - | chr1_4:59656064-59656083 | Msa0174090:intron | 45.0% | |
| GGTATGCAGGAAGGATGATA+TGG | - | chr1_4:59656073-59656092 | Msa0174090:intron | 45.0% | |
| TGTCATCATCATCACCAAGG+TGG | + | chr1_4:59656283-59656302 | None:intergenic | 45.0% | |
| ! | AGGAATGTGTTGATGCACGC+AGG | + | chr1_4:59652696-59652715 | None:intergenic | 50.0% |
| !! | GGGTTCTACCCTTTGACTTG+AGG | - | chr1_4:59652750-59652769 | Msa0174090:three_prime_UTR | 50.0% |
| AGAAAAAAGGGGGGTCAAGG+AGG | + | chr1_4:59652778-59652797 | None:intergenic | 50.0% | |
| TGGTGAAAACACGAGCGAAG+AGG | - | chr1_4:59653092-59653111 | Msa0174090:intron | 50.0% | |
| !!! | GGTGGCTTTTGAGGCTTTCT+TGG | + | chr1_4:59653357-59653376 | None:intergenic | 50.0% |
| TCCAAAGATGGACCTCTAGG+AGG | + | chr1_4:59653384-59653403 | None:intergenic | 50.0% | |
| GCATCCAAAGATGGACCTCT+AGG | + | chr1_4:59653387-59653406 | None:intergenic | 50.0% | |
| AGAGGTCCATCTTTGGATGC+TGG | - | chr1_4:59653387-59653406 | Msa0174090:intron | 50.0% | |
| ! | AGCTGCCTGTATCGGTACAT+TGG | - | chr1_4:59653810-59653829 | Msa0174090:intron | 50.0% |
| ! | CCAAGCCAATGTACCGATAC+AGG | + | chr1_4:59653818-59653837 | None:intergenic | 50.0% |
| ! | CCTGTATCGGTACATTGGCT+TGG | - | chr1_4:59653815-59653834 | Msa0174090:intron | 50.0% |
| TGAAGTGGATGGGAATAGGC+TGG | - | chr1_4:59654729-59654748 | Msa0174090:intron | 50.0% | |
| GAAGTGGATGGGAATAGGCT+GGG | - | chr1_4:59654730-59654749 | Msa0174090:intron | 50.0% | |
| AAAATTGGCAGGCCAGGCTT+AGG | + | chr1_4:59654807-59654826 | None:intergenic | 50.0% | |
| TATCAGGCTTTCAGAAGGCC+AGG | + | chr1_4:59654886-59654905 | None:intergenic | 50.0% | |
| ! | GGCCTTCTGAAAGCCTGATA+CGG | - | chr1_4:59654886-59654905 | Msa0174090:intron | 50.0% |
| !! | GCCTTTTTGGCCTATTAGGC+CGG | + | chr1_4:59655229-59655248 | None:intergenic | 50.0% |
| CGTTGCATAGGGATGGGAAT+AGG | + | chr1_4:59655390-59655409 | None:intergenic | 50.0% | |
| CCCATCCCTATGCAACGATA+AGG | - | chr1_4:59655393-59655412 | Msa0174090:CDS | 50.0% | |
| TAGTGTCGTGTCGTCGTGTT+AGG | - | chr1_4:59655533-59655552 | Msa0174090:CDS | 50.0% | |
| ! | TGATGCAACAGCTGACTCAG+GGG | + | chr1_4:59655846-59655865 | None:intergenic | 50.0% |
| ! | CTGATGCAACAGCTGACTCA+GGG | + | chr1_4:59655847-59655866 | None:intergenic | 50.0% |
| ! | TCTGATGCAACAGCTGACTC+AGG | + | chr1_4:59655848-59655867 | None:intergenic | 50.0% |
| TCAGCTGTTGCATCAGACGA+AGG | - | chr1_4:59655851-59655870 | Msa0174090:intron | 50.0% | |
| GCCAAGTTCATCTCCATTGC+TGG | + | chr1_4:59655912-59655931 | None:intergenic | 50.0% | |
| ! | GGAGGCAAAGGTGGCTTTTG+AGG | + | chr1_4:59653366-59653385 | None:intergenic | 55.0% |
| AAGCCACCTTTGCCTCCTAG+AGG | - | chr1_4:59653369-59653388 | Msa0174090:intron | 55.0% | |
| ! | GATGGACCTCTAGGAGGCAA+AGG | + | chr1_4:59653378-59653397 | None:intergenic | 55.0% |
| GCCTCCTAGAGGTCCATCTT+TGG | - | chr1_4:59653380-59653399 | Msa0174090:intron | 55.0% | |
| ! | GGCTTTGTAAGGCTTGAGCC+TGG | - | chr1_4:59654761-59654780 | Msa0174090:intron | 55.0% |
| GGCCGTATCAGGCTTTCAGA+AGG | + | chr1_4:59654891-59654910 | None:intergenic | 55.0% | |
| GCCGGCCTAATAGGCCAAAA+AGG | - | chr1_4:59655225-59655244 | Msa0174090:intron | 55.0% | |
| GAAAAAAGCCTGGCATGGCC+TGG | - | chr1_4:59655322-59655341 | Msa0174090:CDS | 55.0% | |
| CATAGGGATGGGAATAGGCC+AGG | + | chr1_4:59655385-59655404 | None:intergenic | 55.0% | |
| GTCGGACACTGACACGTGTT+AGG | + | chr1_4:59655458-59655477 | None:intergenic | 55.0% | |
| TCTGCGAGTAGTGCGTCTGT+TGG | - | chr1_4:59655809-59655828 | Msa0174090:CDS | 55.0% | |
| CTGCGAGTAGTGCGTCTGTT+GGG | - | chr1_4:59655810-59655829 | Msa0174090:CDS | 55.0% | |
| ! | GGACCTCTAGGAGGCAAAGG+TGG | + | chr1_4:59653375-59653394 | None:intergenic | 60.0% |
| ! | TTGCGTTGAGGAAGCGTGCG+AGG | - | chr1_4:59653442-59653461 | Msa0174090:intron | 60.0% |
| ! | GGGCCGAGCTAGGCTTTGTA+AGG | - | chr1_4:59654750-59654769 | Msa0174090:intron | 60.0% |
| GTAAGCCTATGACAGGCCGC+AGG | + | chr1_4:59654849-59654868 | None:intergenic | 60.0% | |
| GCTTTCAGAAGGCCAGGCTC+AGG | + | chr1_4:59654880-59654899 | None:intergenic | 60.0% | |
| ACAGGCTAGCAGGCCGTATC+AGG | + | chr1_4:59654902-59654921 | None:intergenic | 60.0% | |
| CCTATGGCCTAGCCTACGAC+AGG | + | chr1_4:59655348-59655367 | None:intergenic | 60.0% | |
| CCTGTCGTAGGCTAGGCCAT+AGG | - | chr1_4:59655345-59655364 | Msa0174090:CDS | 60.0% | |
| GGAATAGGCTGGGCCGAGCT+AGG | - | chr1_4:59654740-59654759 | Msa0174090:intron | 65.0% | |
| GAAGGCCTAAGCCTGGCCTG+CGG | - | chr1_4:59654799-59654818 | Msa0174090:intron | 65.0% | |
| GCTAGGCCATAGGCCCCTGT+AGG | - | chr1_4:59655355-59655374 | Msa0174090:CDS | 65.0% | |
| ATAGGCCAGGCCGGCCTACA+GGG | + | chr1_4:59655372-59655391 | None:intergenic | 65.0% | |
| AATAGGCCAGGCCGGCCTAC+AGG | + | chr1_4:59655373-59655392 | None:intergenic | 65.0% | |
| GGGATGGGAATAGGCCAGGC+CGG | + | chr1_4:59655381-59655400 | None:intergenic | 65.0% | |
| ACAGGCCGCAGGCCAGGCTT+AGG | + | chr1_4:59654838-59654857 | None:intergenic | 70.0% | |
| CCTATGACAGGCCGCAGGCC+AGG | + | chr1_4:59654844-59654863 | None:intergenic | 70.0% | |
| CCTGGCCTGCGGCCTGTCAT+AGG | - | chr1_4:59654841-59654860 | Msa0174090:intron | 70.0% | |
| ACGACAGGCCAGGCCATGCC+AGG | + | chr1_4:59655333-59655352 | None:intergenic | 70.0% | |
| GGCATGGCCTGGCCTGTCGT+AGG | - | chr1_4:59655333-59655352 | Msa0174090:CDS | 70.0% | |
| GGCCTGGCCTGTCGTAGGCT+AGG | - | chr1_4:59655338-59655357 | Msa0174090:CDS | 70.0% | |
| GGCCTAGCCTACGACAGGCC+AGG | + | chr1_4:59655343-59655362 | None:intergenic | 70.0% | |
| GGCCATAGGCCCCTGTAGGC+CGG | - | chr1_4:59655359-59655378 | Msa0174090:CDS | 70.0% | |
| TAGGCCAGGCCGGCCTACAG+GGG | + | chr1_4:59655371-59655390 | None:intergenic | 70.0% | |
| GGCCGGCCTACAGGGGCCTA+TGG | + | chr1_4:59655364-59655383 | None:intergenic | 75.0% | |
| TAGGCCCCTGTAGGCCGGCC+TGG | - | chr1_4:59655364-59655383 | Msa0174090:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 59652575 | 59656325 | 59652575 | ID=Msa0174090;Name=Msa0174090 |
| chr1_4 | mRNA | 59652575 | 59656325 | 59652575 | ID=Msa0174090-mRNA-1;Parent=Msa0174090;Name=Msa0174090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=197|1|1|1|0.66|0.75|4|235|236 |
| chr1_4 | exon | 59652575 | 59652826 | 59652575 | ID=Msa0174090-mRNA-1:exon:18702;Parent=Msa0174090-mRNA-1 |
| chr1_4 | exon | 59652956 | 59653099 | 59652956 | ID=Msa0174090-mRNA-1:exon:18701;Parent=Msa0174090-mRNA-1 |
| chr1_4 | exon | 59655315 | 59655864 | 59655315 | ID=Msa0174090-mRNA-1:exon:18700;Parent=Msa0174090-mRNA-1 |
| chr1_4 | exon | 59656129 | 59656325 | 59656129 | ID=Msa0174090-mRNA-1:exon:18699;Parent=Msa0174090-mRNA-1 |
| chr1_4 | five_prime_UTR | 59656129 | 59656325 | 59656129 | ID=Msa0174090-mRNA-1:five_prime_utr;Parent=Msa0174090-mRNA-1 |
| chr1_4 | CDS | 59655315 | 59655864 | 59655315 | ID=Msa0174090-mRNA-1:cds;Parent=Msa0174090-mRNA-1 |
| chr1_4 | CDS | 59652956 | 59653099 | 59652956 | ID=Msa0174090-mRNA-1:cds;Parent=Msa0174090-mRNA-1 |
| chr1_4 | CDS | 59652810 | 59652826 | 59652810 | ID=Msa0174090-mRNA-1:cds;Parent=Msa0174090-mRNA-1 |
| chr1_4 | three_prime_UTR | 59652575 | 59652809 | 59652575 | ID=Msa0174090-mRNA-1:three_prime_utr;Parent=Msa0174090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
