AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0148080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0148080 MtrunA17_Chr1g0150971 98.305 236 4 0 1 236 751 986 2.83e-161 471
Msa0148080 MtrunA17_Chr1g0150991 87.000 100 13 0 1 100 541 640 3.60e-55 186
Msa0148080 MtrunA17_Chr1g0151001 82.500 40 7 0 197 236 1 40 2.29e-15 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0148080 AT4G33210.1 69.130 230 66 1 1 230 760 984 6.02e-100 312

Find 59 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAAACCTTCCTAATATT+TGG 0.132121 1_4:-8322631 None:intergenic
CAGGAGTTGGATTTGTCTTA+TGG 0.225295 1_4:+8322376 Msa0148080:CDS
GCAGATAAGCTCAGCGAGTA+TGG 0.274859 1_4:+8323890 Msa0148080:intron
CTTGAAGGTACTAAAGTTGC+AGG 0.289199 1_4:+8322288 None:intergenic
GCGTGGGTTGTCCAAATATT+AGG 0.308828 1_4:+8322620 Msa0148080:CDS
TGGTGCTTTACCAGCTCTTC+AGG 0.309631 1_4:+8322357 Msa0148080:CDS
AAATTTCGTGCAGCATGTTC+TGG 0.324114 1_4:+8323915 Msa0148080:CDS
ATCTATGCTGGCTTAATCTA+AGG 0.328261 1_4:+8322740 Msa0148080:CDS
TTTATATTGTTGTGTTTGTT+TGG 0.344802 1_4:+8324079 Msa0148080:three_prime_UTR
ATTGACCAATCTATTCCTTC+AGG 0.349829 1_4:+8322883 Msa0148080:CDS
ATAACAATTTACAATACATT+AGG 0.357522 1_4:-8324054 None:intergenic
TGAATATGCATGATTTAAAC+TGG 0.360921 1_4:+8322476 Msa0148080:CDS
CTTACACGTGTGAGTTTAAA+CGG 0.367445 1_4:+8322448 Msa0148080:CDS
ACAAGAAAGAAGCTCTTCTA+TGG 0.373730 1_4:-8322416 None:intergenic
CTTCAGCAACTGTTCCTCAT+TGG 0.386483 1_4:+8322835 Msa0148080:intron
TCAAATTAGCTGACAGAGAA+AGG 0.397336 1_4:-8322693 None:intergenic
TCTGAAGTGTTCTGAAGAAT+AGG 0.403065 1_4:+8324201 Msa0148080:three_prime_UTR
AGGCACACTTGGCAATAAAT+CGG 0.403187 1_4:+8324025 Msa0148080:three_prime_UTR
AGTTGAGGTTCTGAAGTAAT+CGG 0.409969 1_4:-8322597 None:intergenic
TTCTCTGTCAGCTAATTTGA+AGG 0.430609 1_4:+8322696 Msa0148080:CDS
TGGGAACAGTGTGCTGTTGA+TGG 0.451344 1_4:-8322655 None:intergenic
TGATGTTCGCTTCTGTCCTA+AGG 0.472083 1_4:+8323747 Msa0148080:CDS
GTCGCTTGAACCTCTTTACA+AGG 0.475184 1_4:+8322333 Msa0148080:CDS
TTTACCAGCTCTTCAGGAGT+TGG 0.481593 1_4:+8322363 Msa0148080:CDS
AATAACCTGAAGGAATAGAT+TGG 0.496884 1_4:-8322888 None:intergenic
CGTTTAAACTCACACGTGTA+AGG 0.497322 1_4:-8322447 None:intergenic
TAGCTTGTCTCAATCTATGC+TGG 0.504946 1_4:+8322728 Msa0148080:CDS
GGCACACTTGGCAATAAATC+GGG 0.505217 1_4:+8324026 Msa0148080:three_prime_UTR
CGTAGGAAGTTGCAATGGAT+AGG 0.505696 1_4:-8322543 None:intergenic
ACAGCATAAAATGTATATCA+AGG 0.510547 1_4:-8324236 None:intergenic
TGCTTGTTCACTTGGAGAGA+AGG 0.511142 1_4:+8324005 Msa0148080:three_prime_UTR
ACTTGGAGAGAAGGCACACT+TGG 0.511322 1_4:+8324014 Msa0148080:three_prime_UTR
AAATCCAACTCCTGAAGAGC+TGG 0.522527 1_4:-8322367 None:intergenic
GTTGAGGTTCTGAAGTAATC+GGG 0.533869 1_4:-8322596 None:intergenic
ATGCTTATGCCAGGTAACTC+AGG 0.533873 1_4:-8322520 None:intergenic
GGGAAGTTTCCTGAGTTACC+TGG 0.537422 1_4:+8322511 Msa0148080:CDS
TTGTTTGGCATATAGAAATG+AGG 0.544892 1_4:+8324094 Msa0148080:three_prime_UTR
TATATCAAAATGTACTATGT+TGG 0.549378 1_4:+8323717 Msa0148080:CDS
AGGAATAGATTGGTCAATCT+CGG 0.550623 1_4:-8322878 None:intergenic
CAGATAAGCTCAGCGAGTAT+GGG 0.555131 1_4:+8323891 Msa0148080:intron
TTGGACAACCCACGCAGTTG+AGG 0.574282 1_4:-8322612 None:intergenic
AAAGCACCACCCTTGTAAAG+AGG 0.574646 1_4:-8322343 None:intergenic
ATGGATAGGATGCTTATGCC+AGG 0.587259 1_4:-8322529 None:intergenic
TCTGTCAGCTAATTTGAAGG+AGG 0.588127 1_4:+8322699 Msa0148080:CDS
CTTGAACCTCTTTACAAGGG+TGG 0.591774 1_4:+8322337 Msa0148080:CDS
GGGTTGTCCAAATATTAGGA+AGG 0.595090 1_4:+8322624 Msa0148080:CDS
CTTCAGAACCTCAACTGCGT+GGG 0.595625 1_4:+8322604 Msa0148080:CDS
AGGTTCTGAAGTAATCGGGT+GGG 0.597859 1_4:-8322592 None:intergenic
TGGGTTGCTCATTTGACACA+TGG 0.607349 1_4:-8322573 None:intergenic
GAGGTTCTGAAGTAATCGGG+TGG 0.620687 1_4:-8322593 None:intergenic
ACTTCAGAACCTCAACTGCG+TGG 0.633478 1_4:+8322603 Msa0148080:CDS
GGCGTGCAATATTGACGAGG+AGG 0.640334 1_4:+8323681 Msa0148080:intron
GAATATGCATGATTTAAACT+GGG 0.641737 1_4:+8322477 Msa0148080:CDS
GATTATAAATCATACTGATG+AGG 0.647429 1_4:-8323967 None:intergenic
TCGCTTGAACCTCTTTACAA+GGG 0.652251 1_4:+8322334 Msa0148080:CDS
TAGCTTCAAAACTTCCAATG+AGG 0.654384 1_4:-8322849 None:intergenic
TTAGGCGTGCAATATTGACG+AGG 0.699170 1_4:+8323678 Msa0148080:intron
AATATGCATGATTTAAACTG+GGG 0.702634 1_4:+8322478 Msa0148080:CDS
ATATGCATGATTTAAACTGG+GGG 0.730286 1_4:+8322479 Msa0148080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGTTTAAAAATAATAAAT+GGG - chr1_4:8322677-8322696 None:intergenic 10.0%
!! AAAGGTTTAAAAATAATAAA+TGG - chr1_4:8322678-8322697 None:intergenic 10.0%
!!! TATCTTTTTAGAAAATTATA+CGG + chr1_4:8323372-8323391 Msa0148080:intron 10.0%
!!! TACATTTTTCTTAAAAATTT+AGG + chr1_4:8323456-8323475 Msa0148080:intron 10.0%
!!! ACATTTTTCTTAAAAATTTA+GGG + chr1_4:8323457-8323476 Msa0148080:intron 10.0%
!! AAGGTTTAAAAATAATAAAT+GGG - chr1_4:8322677-8322696 None:intergenic 10.0%
!! AAAGGTTTAAAAATAATAAA+TGG - chr1_4:8322678-8322697 None:intergenic 10.0%
!!! TATCTTTTTAGAAAATTATA+CGG + chr1_4:8323372-8323391 Msa0148080:intron 10.0%
!!! TACATTTTTCTTAAAAATTT+AGG + chr1_4:8323456-8323475 Msa0148080:intron 10.0%
!!! ACATTTTTCTTAAAAATTTA+GGG + chr1_4:8323457-8323476 Msa0148080:intron 10.0%
!!! AAACATTATAATTTGTTATG+AGG - chr1_4:8322805-8322824 None:intergenic 15.0%
!! ATATACTTCAAAATTTATTG+TGG + chr1_4:8322986-8323005 Msa0148080:intron 15.0%
!! TATTGTATATACTCTATTAT+TGG + chr1_4:8323070-8323089 Msa0148080:intron 15.0%
!! ATTGTATATACTCTATTATT+GGG + chr1_4:8323071-8323090 Msa0148080:intron 15.0%
!!! ATATTTTGAAATGTTGATTT+CGG + chr1_4:8323788-8323807 Msa0148080:intron 15.0%
!! ATAACAATTTACAATACATT+AGG - chr1_4:8324057-8324076 None:intergenic 15.0%
!!! AAACATTATAATTTGTTATG+AGG - chr1_4:8322805-8322824 None:intergenic 15.0%
!! ATATACTTCAAAATTTATTG+TGG + chr1_4:8322986-8323005 Msa0148080:intron 15.0%
!! TATTGTATATACTCTATTAT+TGG + chr1_4:8323070-8323089 Msa0148080:intron 15.0%
!! ATTGTATATACTCTATTATT+GGG + chr1_4:8323071-8323090 Msa0148080:intron 15.0%
!!! ATATTTTGAAATGTTGATTT+CGG + chr1_4:8323788-8323807 Msa0148080:intron 15.0%
!! ATAACAATTTACAATACATT+AGG - chr1_4:8324057-8324076 None:intergenic 15.0%
!!! AATTTAGAATTTACAACTGT+CGG + chr1_4:8323274-8323293 Msa0148080:intron 20.0%
!!! TTTCTTAAAAATTTAGGGTA+TGG + chr1_4:8323462-8323481 Msa0148080:intron 20.0%
!!! TTCTTAAAAATTTAGGGTAT+GGG + chr1_4:8323463-8323482 Msa0148080:intron 20.0%
!!! TCAAATGTCACATTTATTTT+AGG - chr1_4:8323507-8323526 None:intergenic 20.0%
!! GATATTCTTCAAATTATTTG+AGG + chr1_4:8323525-8323544 Msa0148080:intron 20.0%
!! TATATCAAAATGTACTATGT+TGG + chr1_4:8323717-8323736 Msa0148080:CDS 20.0%
!!! ATCATTTATGGGATATTTTA+TGG + chr1_4:8323861-8323880 Msa0148080:intron 20.0%
!!! TTATAATCTATGATGTTTTG+TGG + chr1_4:8323982-8324001 Msa0148080:three_prime_UTR 20.0%
!! TTTATATTGTTGTGTTTGTT+TGG + chr1_4:8324079-8324098 Msa0148080:three_prime_UTR 20.0%
!! AAAACATCAAAAACTTATTG+TGG - chr1_4:8324136-8324155 None:intergenic 20.0%
!!! AATTTAGAATTTACAACTGT+CGG + chr1_4:8323274-8323293 Msa0148080:intron 20.0%
!!! TTTCTTAAAAATTTAGGGTA+TGG + chr1_4:8323462-8323481 Msa0148080:intron 20.0%
!!! TTCTTAAAAATTTAGGGTAT+GGG + chr1_4:8323463-8323482 Msa0148080:intron 20.0%
!!! TCAAATGTCACATTTATTTT+AGG - chr1_4:8323507-8323526 None:intergenic 20.0%
!! GATATTCTTCAAATTATTTG+AGG + chr1_4:8323525-8323544 Msa0148080:intron 20.0%
!! TATATCAAAATGTACTATGT+TGG + chr1_4:8323717-8323736 Msa0148080:CDS 20.0%
!!! ATCATTTATGGGATATTTTA+TGG + chr1_4:8323861-8323880 Msa0148080:intron 20.0%
!!! TTATAATCTATGATGTTTTG+TGG + chr1_4:8323982-8324001 Msa0148080:three_prime_UTR 20.0%
!! TTTATATTGTTGTGTTTGTT+TGG + chr1_4:8324079-8324098 Msa0148080:three_prime_UTR 20.0%
!! AAAACATCAAAAACTTATTG+TGG - chr1_4:8324136-8324155 None:intergenic 20.0%
! TGAATATGCATGATTTAAAC+TGG + chr1_4:8322476-8322495 Msa0148080:CDS 25.0%
! GAATATGCATGATTTAAACT+GGG + chr1_4:8322477-8322496 Msa0148080:CDS 25.0%
! AATATGCATGATTTAAACTG+GGG + chr1_4:8322478-8322497 Msa0148080:CDS 25.0%
! ATGAAAACCTTCCTAATATT+TGG - chr1_4:8322634-8322653 None:intergenic 25.0%
! AGATAAGAATAATAACCTGA+AGG - chr1_4:8322901-8322920 None:intergenic 25.0%
! ATCTCTATTATGTTGAAACT+GGG - chr1_4:8323132-8323151 None:intergenic 25.0%
! AATCTCTATTATGTTGAAAC+TGG - chr1_4:8323133-8323152 None:intergenic 25.0%
!! ACAAGTGAATTTTACCAAAT+AGG + chr1_4:8323187-8323206 Msa0148080:intron 25.0%
!! TTACATTTTATAGCTGTCAT+TGG + chr1_4:8323342-8323361 Msa0148080:intron 25.0%
!! TCTTAAAAATTTAGGGTATG+GGG + chr1_4:8323464-8323483 Msa0148080:intron 25.0%
! TTAACACAACAATGAATCAA+AGG - chr1_4:8323607-8323626 None:intergenic 25.0%
!!! TTGGACAATTTGGTTTTTTT+AGG + chr1_4:8323660-8323679 Msa0148080:intron 25.0%
!!! ATGAACCTTTATTTTGCATA+TGG + chr1_4:8323816-8323835 Msa0148080:intron 25.0%
! AACAACCATATGCAAAATAA+AGG - chr1_4:8323824-8323843 None:intergenic 25.0%
! GATGTTCTTCAATCATTTAT+GGG + chr1_4:8323850-8323869 Msa0148080:intron 25.0%
! GATTATAAATCATACTGATG+AGG - chr1_4:8323970-8323989 None:intergenic 25.0%
! ACAGCATAAAATGTATATCA+AGG - chr1_4:8324239-8324258 None:intergenic 25.0%
! TGAATATGCATGATTTAAAC+TGG + chr1_4:8322476-8322495 Msa0148080:CDS 25.0%
! GAATATGCATGATTTAAACT+GGG + chr1_4:8322477-8322496 Msa0148080:CDS 25.0%
! AATATGCATGATTTAAACTG+GGG + chr1_4:8322478-8322497 Msa0148080:CDS 25.0%
! ATGAAAACCTTCCTAATATT+TGG - chr1_4:8322634-8322653 None:intergenic 25.0%
! AGATAAGAATAATAACCTGA+AGG - chr1_4:8322901-8322920 None:intergenic 25.0%
! ATCTCTATTATGTTGAAACT+GGG - chr1_4:8323132-8323151 None:intergenic 25.0%
! AATCTCTATTATGTTGAAAC+TGG - chr1_4:8323133-8323152 None:intergenic 25.0%
!! ACAAGTGAATTTTACCAAAT+AGG + chr1_4:8323187-8323206 Msa0148080:intron 25.0%
!! TTACATTTTATAGCTGTCAT+TGG + chr1_4:8323342-8323361 Msa0148080:intron 25.0%
!! TCTTAAAAATTTAGGGTATG+GGG + chr1_4:8323464-8323483 Msa0148080:intron 25.0%
! TTAACACAACAATGAATCAA+AGG - chr1_4:8323607-8323626 None:intergenic 25.0%
!!! TTGGACAATTTGGTTTTTTT+AGG + chr1_4:8323660-8323679 Msa0148080:intron 25.0%
!!! ATGAACCTTTATTTTGCATA+TGG + chr1_4:8323816-8323835 Msa0148080:intron 25.0%
! AACAACCATATGCAAAATAA+AGG - chr1_4:8323824-8323843 None:intergenic 25.0%
! GATGTTCTTCAATCATTTAT+GGG + chr1_4:8323850-8323869 Msa0148080:intron 25.0%
! GATTATAAATCATACTGATG+AGG - chr1_4:8323970-8323989 None:intergenic 25.0%
! ACAGCATAAAATGTATATCA+AGG - chr1_4:8324239-8324258 None:intergenic 25.0%
ATATGCATGATTTAAACTGG+GGG + chr1_4:8322479-8322498 Msa0148080:CDS 30.0%
AATAACCTGAAGGAATAGAT+TGG - chr1_4:8322891-8322910 None:intergenic 30.0%
AACAACAATTATGATGTGTG+TGG - chr1_4:8322939-8322958 None:intergenic 30.0%
TCTAAATTGTAATGCAGTGA+AGG - chr1_4:8323262-8323281 None:intergenic 30.0%
!!! GTCACATTTATTTTAGGTGA+AGG - chr1_4:8323501-8323520 None:intergenic 30.0%
CTTATATGTTTGTTCGTGTT+TGG + chr1_4:8323641-8323660 Msa0148080:intron 30.0%
GGATGTTCTTCAATCATTTA+TGG + chr1_4:8323849-8323868 Msa0148080:intron 30.0%
TTGTTTGGCATATAGAAATG+AGG + chr1_4:8324094-8324113 Msa0148080:three_prime_UTR 30.0%
ATATGCATGATTTAAACTGG+GGG + chr1_4:8322479-8322498 Msa0148080:CDS 30.0%
AATAACCTGAAGGAATAGAT+TGG - chr1_4:8322891-8322910 None:intergenic 30.0%
AACAACAATTATGATGTGTG+TGG - chr1_4:8322939-8322958 None:intergenic 30.0%
TCTAAATTGTAATGCAGTGA+AGG - chr1_4:8323262-8323281 None:intergenic 30.0%
!!! GTCACATTTATTTTAGGTGA+AGG - chr1_4:8323501-8323520 None:intergenic 30.0%
CTTATATGTTTGTTCGTGTT+TGG + chr1_4:8323641-8323660 Msa0148080:intron 30.0%
GGATGTTCTTCAATCATTTA+TGG + chr1_4:8323849-8323868 Msa0148080:intron 30.0%
TTGTTTGGCATATAGAAATG+AGG + chr1_4:8324094-8324113 Msa0148080:three_prime_UTR 30.0%
ACAAGAAAGAAGCTCTTCTA+TGG - chr1_4:8322419-8322438 None:intergenic 35.0%
CTTACACGTGTGAGTTTAAA+CGG + chr1_4:8322448-8322467 Msa0148080:CDS 35.0%
!! AGTTGAGGTTCTGAAGTAAT+CGG - chr1_4:8322600-8322619 None:intergenic 35.0%
TCAAATTAGCTGACAGAGAA+AGG - chr1_4:8322696-8322715 None:intergenic 35.0%
TTCTCTGTCAGCTAATTTGA+AGG + chr1_4:8322696-8322715 Msa0148080:CDS 35.0%
!! ATCTATGCTGGCTTAATCTA+AGG + chr1_4:8322740-8322759 Msa0148080:CDS 35.0%
TAGCTTCAAAACTTCCAATG+AGG - chr1_4:8322852-8322871 None:intergenic 35.0%
! AGGAATAGATTGGTCAATCT+CGG - chr1_4:8322881-8322900 None:intergenic 35.0%
ATTGACCAATCTATTCCTTC+AGG + chr1_4:8322883-8322902 Msa0148080:CDS 35.0%
AATAGAGATTGAGACTTGCA+TGG + chr1_4:8323143-8323162 Msa0148080:intron 35.0%
!!! ATCCGTCTGCTTTTTAAGAA+TGG + chr1_4:8323427-8323446 Msa0148080:intron 35.0%
!!! TCCGTCTGCTTTTTAAGAAT+GGG + chr1_4:8323428-8323447 Msa0148080:intron 35.0%
!!! TTATTTTAGGTGAAGGACAG+AGG - chr1_4:8323494-8323513 None:intergenic 35.0%
ACAACAATGAATCAAAGGAC+GGG - chr1_4:8323602-8323621 None:intergenic 35.0%
CACAACAATGAATCAAAGGA+CGG - chr1_4:8323603-8323622 None:intergenic 35.0%
TTGTTCGTGTTTGGACAATT+TGG + chr1_4:8323650-8323669 Msa0148080:intron 35.0%
! TTTTGCATATGGTTGTTGCT+TGG + chr1_4:8323827-8323846 Msa0148080:intron 35.0%
! TTTGCATATGGTTGTTGCTT+GGG + chr1_4:8323828-8323847 Msa0148080:intron 35.0%
!! TCTGAAGTGTTCTGAAGAAT+AGG + chr1_4:8324201-8324220 Msa0148080:three_prime_UTR 35.0%
! CTTGCATTTTACAATGCATG+CGG + chr1_4:8324301-8324320 Msa0148080:three_prime_UTR 35.0%
ACAAGAAAGAAGCTCTTCTA+TGG - chr1_4:8322419-8322438 None:intergenic 35.0%
CTTACACGTGTGAGTTTAAA+CGG + chr1_4:8322448-8322467 Msa0148080:CDS 35.0%
!! AGTTGAGGTTCTGAAGTAAT+CGG - chr1_4:8322600-8322619 None:intergenic 35.0%
TCAAATTAGCTGACAGAGAA+AGG - chr1_4:8322696-8322715 None:intergenic 35.0%
TTCTCTGTCAGCTAATTTGA+AGG + chr1_4:8322696-8322715 Msa0148080:CDS 35.0%
!! ATCTATGCTGGCTTAATCTA+AGG + chr1_4:8322740-8322759 Msa0148080:CDS 35.0%
TAGCTTCAAAACTTCCAATG+AGG - chr1_4:8322852-8322871 None:intergenic 35.0%
! AGGAATAGATTGGTCAATCT+CGG - chr1_4:8322881-8322900 None:intergenic 35.0%
ATTGACCAATCTATTCCTTC+AGG + chr1_4:8322883-8322902 Msa0148080:CDS 35.0%
AATAGAGATTGAGACTTGCA+TGG + chr1_4:8323143-8323162 Msa0148080:intron 35.0%
!!! ATCCGTCTGCTTTTTAAGAA+TGG + chr1_4:8323427-8323446 Msa0148080:intron 35.0%
!!! TCCGTCTGCTTTTTAAGAAT+GGG + chr1_4:8323428-8323447 Msa0148080:intron 35.0%
!!! TTATTTTAGGTGAAGGACAG+AGG - chr1_4:8323494-8323513 None:intergenic 35.0%
ACAACAATGAATCAAAGGAC+GGG - chr1_4:8323602-8323621 None:intergenic 35.0%
CACAACAATGAATCAAAGGA+CGG - chr1_4:8323603-8323622 None:intergenic 35.0%
TTGTTCGTGTTTGGACAATT+TGG + chr1_4:8323650-8323669 Msa0148080:intron 35.0%
! TTTTGCATATGGTTGTTGCT+TGG + chr1_4:8323827-8323846 Msa0148080:intron 35.0%
! TTTGCATATGGTTGTTGCTT+GGG + chr1_4:8323828-8323847 Msa0148080:intron 35.0%
!! TCTGAAGTGTTCTGAAGAAT+AGG + chr1_4:8324201-8324220 Msa0148080:three_prime_UTR 35.0%
! CTTGCATTTTACAATGCATG+CGG + chr1_4:8324301-8324320 Msa0148080:three_prime_UTR 35.0%
TCGCTTGAACCTCTTTACAA+GGG + chr1_4:8322334-8322353 Msa0148080:CDS 40.0%
CAGGAGTTGGATTTGTCTTA+TGG + chr1_4:8322376-8322395 Msa0148080:CDS 40.0%
CGTTTAAACTCACACGTGTA+AGG - chr1_4:8322450-8322469 None:intergenic 40.0%
! GTTTTCGTAGGAAGTTGCAA+TGG - chr1_4:8322551-8322570 None:intergenic 40.0%
!! TGACACATGGTTGTTTTCGT+AGG - chr1_4:8322563-8322582 None:intergenic 40.0%
!! GTTGAGGTTCTGAAGTAATC+GGG - chr1_4:8322599-8322618 None:intergenic 40.0%
GGGTTGTCCAAATATTAGGA+AGG + chr1_4:8322624-8322643 Msa0148080:CDS 40.0%
TCTGTCAGCTAATTTGAAGG+AGG + chr1_4:8322699-8322718 Msa0148080:CDS 40.0%
! TAGCTTGTCTCAATCTATGC+TGG + chr1_4:8322728-8322747 Msa0148080:CDS 40.0%
! ACCGATCCACATTCTTTTGA+GGG - chr1_4:8322776-8322795 None:intergenic 40.0%
! AACCGATCCACATTCTTTTG+AGG - chr1_4:8322777-8322796 None:intergenic 40.0%
!! GTGTTTTTGTCCCGATCTTT+TGG + chr1_4:8323397-8323416 Msa0148080:intron 40.0%
GATAAACCAGCCAAAAGATC+GGG - chr1_4:8323410-8323429 None:intergenic 40.0%
GGATAAACCAGCCAAAAGAT+CGG - chr1_4:8323411-8323430 None:intergenic 40.0%
GCCCATTCTTAAAAAGCAGA+CGG - chr1_4:8323432-8323451 None:intergenic 40.0%
TATGCATTTGCTCTCACCTT+AGG - chr1_4:8323766-8323785 None:intergenic 40.0%
AAATTTCGTGCAGCATGTTC+TGG + chr1_4:8323915-8323934 Msa0148080:CDS 40.0%
! TTTTGTGGTGCTTGTTCACT+TGG + chr1_4:8323997-8324016 Msa0148080:three_prime_UTR 40.0%
AGGCACACTTGGCAATAAAT+CGG + chr1_4:8324025-8324044 Msa0148080:three_prime_UTR 40.0%
TCGCTTGAACCTCTTTACAA+GGG + chr1_4:8322334-8322353 Msa0148080:CDS 40.0%
CAGGAGTTGGATTTGTCTTA+TGG + chr1_4:8322376-8322395 Msa0148080:CDS 40.0%
CGTTTAAACTCACACGTGTA+AGG - chr1_4:8322450-8322469 None:intergenic 40.0%
! GTTTTCGTAGGAAGTTGCAA+TGG - chr1_4:8322551-8322570 None:intergenic 40.0%
!! TGACACATGGTTGTTTTCGT+AGG - chr1_4:8322563-8322582 None:intergenic 40.0%
!! GTTGAGGTTCTGAAGTAATC+GGG - chr1_4:8322599-8322618 None:intergenic 40.0%
GGGTTGTCCAAATATTAGGA+AGG + chr1_4:8322624-8322643 Msa0148080:CDS 40.0%
TCTGTCAGCTAATTTGAAGG+AGG + chr1_4:8322699-8322718 Msa0148080:CDS 40.0%
! TAGCTTGTCTCAATCTATGC+TGG + chr1_4:8322728-8322747 Msa0148080:CDS 40.0%
! ACCGATCCACATTCTTTTGA+GGG - chr1_4:8322776-8322795 None:intergenic 40.0%
! AACCGATCCACATTCTTTTG+AGG - chr1_4:8322777-8322796 None:intergenic 40.0%
!! GTGTTTTTGTCCCGATCTTT+TGG + chr1_4:8323397-8323416 Msa0148080:intron 40.0%
GATAAACCAGCCAAAAGATC+GGG - chr1_4:8323410-8323429 None:intergenic 40.0%
GGATAAACCAGCCAAAAGAT+CGG - chr1_4:8323411-8323430 None:intergenic 40.0%
GCCCATTCTTAAAAAGCAGA+CGG - chr1_4:8323432-8323451 None:intergenic 40.0%
TATGCATTTGCTCTCACCTT+AGG - chr1_4:8323766-8323785 None:intergenic 40.0%
AAATTTCGTGCAGCATGTTC+TGG + chr1_4:8323915-8323934 Msa0148080:CDS 40.0%
! TTTTGTGGTGCTTGTTCACT+TGG + chr1_4:8323997-8324016 Msa0148080:three_prime_UTR 40.0%
AGGCACACTTGGCAATAAAT+CGG + chr1_4:8324025-8324044 Msa0148080:three_prime_UTR 40.0%
GTCGCTTGAACCTCTTTACA+AGG + chr1_4:8322333-8322352 Msa0148080:CDS 45.0%
CTTGAACCTCTTTACAAGGG+TGG + chr1_4:8322337-8322356 Msa0148080:CDS 45.0%
! AAAGCACCACCCTTGTAAAG+AGG - chr1_4:8322346-8322365 None:intergenic 45.0%
TTTACCAGCTCTTCAGGAGT+TGG + chr1_4:8322363-8322382 Msa0148080:CDS 45.0%
AAATCCAACTCCTGAAGAGC+TGG - chr1_4:8322370-8322389 None:intergenic 45.0%
ATGCTTATGCCAGGTAACTC+AGG - chr1_4:8322523-8322542 None:intergenic 45.0%
ATGGATAGGATGCTTATGCC+AGG - chr1_4:8322532-8322551 None:intergenic 45.0%
CGTAGGAAGTTGCAATGGAT+AGG - chr1_4:8322546-8322565 None:intergenic 45.0%
TGGGTTGCTCATTTGACACA+TGG - chr1_4:8322576-8322595 None:intergenic 45.0%
!! AGGTTCTGAAGTAATCGGGT+GGG - chr1_4:8322595-8322614 None:intergenic 45.0%
! GCGTGGGTTGTCCAAATATT+AGG + chr1_4:8322620-8322639 Msa0148080:CDS 45.0%
! CCGATCCACATTCTTTTGAG+GGG - chr1_4:8322775-8322794 None:intergenic 45.0%
CCCCTCAAAAGAATGTGGAT+CGG + chr1_4:8322772-8322791 Msa0148080:intron 45.0%
CTTCAGCAACTGTTCCTCAT+TGG + chr1_4:8322835-8322854 Msa0148080:intron 45.0%
ATTCACGAGTCCTACCACTT+AGG + chr1_4:8323098-8323117 Msa0148080:intron 45.0%
GAGTCCTACCACTTAGGAAA+TGG + chr1_4:8323104-8323123 Msa0148080:intron 45.0%
GGAACCATTTCCTAAGTGGT+AGG - chr1_4:8323111-8323130 None:intergenic 45.0%
ACTGGGAACCATTTCCTAAG+TGG - chr1_4:8323115-8323134 None:intergenic 45.0%
AACACAGGCACACTCCTATT+TGG - chr1_4:8323204-8323223 None:intergenic 45.0%
! AAATAGGAGTGTGCCTGTGT+TGG + chr1_4:8323203-8323222 Msa0148080:intron 45.0%
TCACGCATTCTTTCCAACAC+AGG - chr1_4:8323219-8323238 None:intergenic 45.0%
! TTTTGTCCCGATCTTTTGGC+TGG + chr1_4:8323401-8323420 Msa0148080:intron 45.0%
TTAGGCGTGCAATATTGACG+AGG + chr1_4:8323678-8323697 Msa0148080:intron 45.0%
TGATGTTCGCTTCTGTCCTA+AGG + chr1_4:8323747-8323766 Msa0148080:CDS 45.0%
CAGATAAGCTCAGCGAGTAT+GGG + chr1_4:8323891-8323910 Msa0148080:intron 45.0%
TGCTTGTTCACTTGGAGAGA+AGG + chr1_4:8324005-8324024 Msa0148080:three_prime_UTR 45.0%
GGCACACTTGGCAATAAATC+GGG + chr1_4:8324026-8324045 Msa0148080:three_prime_UTR 45.0%
GTCGCTTGAACCTCTTTACA+AGG + chr1_4:8322333-8322352 Msa0148080:CDS 45.0%
CTTGAACCTCTTTACAAGGG+TGG + chr1_4:8322337-8322356 Msa0148080:CDS 45.0%
! AAAGCACCACCCTTGTAAAG+AGG - chr1_4:8322346-8322365 None:intergenic 45.0%
TTTACCAGCTCTTCAGGAGT+TGG + chr1_4:8322363-8322382 Msa0148080:CDS 45.0%
AAATCCAACTCCTGAAGAGC+TGG - chr1_4:8322370-8322389 None:intergenic 45.0%
ATGCTTATGCCAGGTAACTC+AGG - chr1_4:8322523-8322542 None:intergenic 45.0%
ATGGATAGGATGCTTATGCC+AGG - chr1_4:8322532-8322551 None:intergenic 45.0%
CGTAGGAAGTTGCAATGGAT+AGG - chr1_4:8322546-8322565 None:intergenic 45.0%
TGGGTTGCTCATTTGACACA+TGG - chr1_4:8322576-8322595 None:intergenic 45.0%
!! AGGTTCTGAAGTAATCGGGT+GGG - chr1_4:8322595-8322614 None:intergenic 45.0%
! GCGTGGGTTGTCCAAATATT+AGG + chr1_4:8322620-8322639 Msa0148080:CDS 45.0%
! CCGATCCACATTCTTTTGAG+GGG - chr1_4:8322775-8322794 None:intergenic 45.0%
CCCCTCAAAAGAATGTGGAT+CGG + chr1_4:8322772-8322791 Msa0148080:intron 45.0%
CTTCAGCAACTGTTCCTCAT+TGG + chr1_4:8322835-8322854 Msa0148080:intron 45.0%
ATTCACGAGTCCTACCACTT+AGG + chr1_4:8323098-8323117 Msa0148080:intron 45.0%
GAGTCCTACCACTTAGGAAA+TGG + chr1_4:8323104-8323123 Msa0148080:intron 45.0%
GGAACCATTTCCTAAGTGGT+AGG - chr1_4:8323111-8323130 None:intergenic 45.0%
ACTGGGAACCATTTCCTAAG+TGG - chr1_4:8323115-8323134 None:intergenic 45.0%
AACACAGGCACACTCCTATT+TGG - chr1_4:8323204-8323223 None:intergenic 45.0%
! AAATAGGAGTGTGCCTGTGT+TGG + chr1_4:8323203-8323222 Msa0148080:intron 45.0%
TCACGCATTCTTTCCAACAC+AGG - chr1_4:8323219-8323238 None:intergenic 45.0%
! TTTTGTCCCGATCTTTTGGC+TGG + chr1_4:8323401-8323420 Msa0148080:intron 45.0%
TTAGGCGTGCAATATTGACG+AGG + chr1_4:8323678-8323697 Msa0148080:intron 45.0%
TGATGTTCGCTTCTGTCCTA+AGG + chr1_4:8323747-8323766 Msa0148080:CDS 45.0%
CAGATAAGCTCAGCGAGTAT+GGG + chr1_4:8323891-8323910 Msa0148080:intron 45.0%
TGCTTGTTCACTTGGAGAGA+AGG + chr1_4:8324005-8324024 Msa0148080:three_prime_UTR 45.0%
GGCACACTTGGCAATAAATC+GGG + chr1_4:8324026-8324045 Msa0148080:three_prime_UTR 45.0%
TGGTGCTTTACCAGCTCTTC+AGG + chr1_4:8322357-8322376 Msa0148080:CDS 50.0%
! TTAAACTGGGGGCACAGTCA+AGG + chr1_4:8322490-8322509 Msa0148080:CDS 50.0%
! TAAACTGGGGGCACAGTCAA+GGG + chr1_4:8322491-8322510 Msa0148080:CDS 50.0%
GGGAAGTTTCCTGAGTTACC+TGG + chr1_4:8322511-8322530 Msa0148080:CDS 50.0%
!! GAGGTTCTGAAGTAATCGGG+TGG - chr1_4:8322596-8322615 None:intergenic 50.0%
ACTTCAGAACCTCAACTGCG+TGG + chr1_4:8322603-8322622 Msa0148080:CDS 50.0%
CTTCAGAACCTCAACTGCGT+GGG + chr1_4:8322604-8322623 Msa0148080:CDS 50.0%
! TGGGAACAGTGTGCTGTTGA+TGG - chr1_4:8322658-8322677 None:intergenic 50.0%
GTTCGCCCCTCAAAAGAATG+TGG + chr1_4:8322767-8322786 Msa0148080:intron 50.0%
GCAGATAAGCTCAGCGAGTA+TGG + chr1_4:8323890-8323909 Msa0148080:intron 50.0%
! ACTTGGAGAGAAGGCACACT+TGG + chr1_4:8324014-8324033 Msa0148080:three_prime_UTR 50.0%
TGGTGCTTTACCAGCTCTTC+AGG + chr1_4:8322357-8322376 Msa0148080:CDS 50.0%
! TTAAACTGGGGGCACAGTCA+AGG + chr1_4:8322490-8322509 Msa0148080:CDS 50.0%
! TAAACTGGGGGCACAGTCAA+GGG + chr1_4:8322491-8322510 Msa0148080:CDS 50.0%
GGGAAGTTTCCTGAGTTACC+TGG + chr1_4:8322511-8322530 Msa0148080:CDS 50.0%
!! GAGGTTCTGAAGTAATCGGG+TGG - chr1_4:8322596-8322615 None:intergenic 50.0%
ACTTCAGAACCTCAACTGCG+TGG + chr1_4:8322603-8322622 Msa0148080:CDS 50.0%
CTTCAGAACCTCAACTGCGT+GGG + chr1_4:8322604-8322623 Msa0148080:CDS 50.0%
! TGGGAACAGTGTGCTGTTGA+TGG - chr1_4:8322658-8322677 None:intergenic 50.0%
GTTCGCCCCTCAAAAGAATG+TGG + chr1_4:8322767-8322786 Msa0148080:intron 50.0%
GCAGATAAGCTCAGCGAGTA+TGG + chr1_4:8323890-8323909 Msa0148080:intron 50.0%
! ACTTGGAGAGAAGGCACACT+TGG + chr1_4:8324014-8324033 Msa0148080:three_prime_UTR 50.0%
TTGGACAACCCACGCAGTTG+AGG - chr1_4:8322615-8322634 None:intergenic 55.0%
GGCGTGCAATATTGACGAGG+AGG + chr1_4:8323681-8323700 Msa0148080:intron 55.0%
TTGGACAACCCACGCAGTTG+AGG - chr1_4:8322615-8322634 None:intergenic 55.0%
GGCGTGCAATATTGACGAGG+AGG + chr1_4:8323681-8323700 Msa0148080:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 8322289 8324357 8322289 ID=Msa0148080;Name=Msa0148080
chr1_4 mRNA 8322289 8324357 8322289 ID=Msa0148080-mRNA-1;Parent=Msa0148080;Name=Msa0148080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.75|1|1|1|4|377|236
chr1_4 exon 8322289 8322761 8322289 ID=Msa0148080-mRNA-1:exon:3585;Parent=Msa0148080-mRNA-1
chr1_4 exon 8322841 8322904 8322841 ID=Msa0148080-mRNA-1:exon:3586;Parent=Msa0148080-mRNA-1
chr1_4 exon 8323682 8323768 8323682 ID=Msa0148080-mRNA-1:exon:3587;Parent=Msa0148080-mRNA-1
chr1_4 exon 8323894 8324357 8323894 ID=Msa0148080-mRNA-1:exon:3588;Parent=Msa0148080-mRNA-1
chr1_4 CDS 8322289 8322761 8322289 ID=Msa0148080-mRNA-1:cds;Parent=Msa0148080-mRNA-1
chr1_4 CDS 8322841 8322904 8322841 ID=Msa0148080-mRNA-1:cds;Parent=Msa0148080-mRNA-1
chr1_4 CDS 8323682 8323768 8323682 ID=Msa0148080-mRNA-1:cds;Parent=Msa0148080-mRNA-1
chr1_4 CDS 8323894 8323980 8323894 ID=Msa0148080-mRNA-1:cds;Parent=Msa0148080-mRNA-1
chr1_4 three_prime_UTR 8323981 8324357 8323981 ID=Msa0148080-mRNA-1:three_prime_utr;Parent=Msa0148080-mRNA-1
Gene Sequence

>Msa0148080

TTGAAGGTACTAAAGTTGCAGGCATGCAAATATCTCACTGACTCGTCGCTTGAACCTCTTTACAAGGGTGGTGCTTTACCAGCTCTTCAGGAGTTGGATTTGTCTTATGGAACTTTGTGTCAGAAAGCCATAGAAGAGCTTCTTTCTTGTTGCACTCACCTTACACGTGTGAGTTTAAACGGCTGTGTGAATATGCATGATTTAAACTGGGGGCACAGTCAAGGGAAGTTTCCTGAGTTACCTGGCATAAGCATCCTATCCATTGCAACTTCCTACGAAAACAACCATGTGTCAAATGAGCAACCCACCCGATTACTTCAGAACCTCAACTGCGTGGGTTGTCCAAATATTAGGAAGGTTTTCATTCCATCAACAGCACACTGTTCCCATTTATTATTTTTAAACCTTTCTCTGTCAGCTAATTTGAAGGAGGTTGATGTAGCTTGTCTCAATCTATGCTGGCTTAATCTAAGCAACTGTTCCTCATTGGAAGTTTTGAAGCTAGAGTGTCCGAGATTGACCAATCTATTCCTTCAGGCGTGCAATATTGACGAGGAGGCTGTTGAAGCTGCTATATCAAAATGTACTATGTTGGAGACTCTTGATGTTCGCTTCTGTCCTAAGATAAGCTCAGCGAGTATGGGAAAATTTCGTGCAGCATGTTCTGGTTTGAAGCGTATATACAGCAGCTTGTCAACCTCATCAGTATGA

Protein sequence

>Msa0148080

LKVLKLQACKYLTDSSLEPLYKGGALPALQELDLSYGTLCQKAIEELLSCCTHLTRVSLNGCVNMHDLNWGHSQGKFPELPGISILSIATSYENNHVSNEQPTRLLQNLNCVGCPNIRKVFIPSTAHCSHLLFLNLSLSANLKEVDVACLNLCWLNLSNCSSLEVLKLECPRLTNLFLQACNIDEEAVEAAISKCTMLETLDVRFCPKISSASMGKFRAACSGLKRIYSSLSTSSV*