Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081780 | XP_013469155.1 | 94.215 | 242 | 8 | 1 | 1 | 242 | 1 | 236 | 1.41e-162 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081780 | A0A072VP34 | 94.215 | 242 | 8 | 1 | 1 | 242 | 1 | 236 | 6.74e-163 | 459 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0081780 | 0.816669 | 4.907625e-52 | -8.615850e-47 |
| Msa0059840 | Msa0081780 | 0.811259 | 7.657682e-51 | -8.615850e-47 |
| Msa0072420 | Msa0081780 | 0.819814 | 9.530355e-53 | -8.615850e-47 |
| Msa0081390 | Msa0081780 | 0.827310 | 1.679272e-54 | -8.615850e-47 |
| Msa0081450 | Msa0081780 | 0.822106 | 2.828337e-53 | -8.615850e-47 |
| Msa0081780 | Msa0084380 | 0.800988 | 1.112816e-48 | -8.615850e-47 |
| Msa0081780 | Msa0090360 | 0.801146 | 1.033249e-48 | -8.615850e-47 |
| Msa0081780 | Msa0101500 | -0.827508 | 1.505302e-54 | -8.615850e-47 |
| Msa0081780 | Msa0148080 | 0.838450 | 2.854894e-57 | -8.615850e-47 |
| Msa0081780 | Msa0150860 | 0.808145 | 3.575579e-50 | -8.615850e-47 |
| Msa0081780 | Msa0168310 | 0.842748 | 2.139993e-58 | -8.615850e-47 |
| Msa0081780 | Msa0173690 | 0.851781 | 7.094308e-61 | -8.615850e-47 |
| Msa0081780 | Msa0174090 | 0.926739 | 3.099638e-91 | -8.615850e-47 |
| Msa0081780 | Msa0175750 | 0.803990 | 2.678167e-49 | -8.615850e-47 |
| Msa0081780 | Msa0204960 | 0.821404 | 4.111935e-53 | -8.615850e-47 |
| Msa0081780 | Msa0211150 | 0.819836 | 9.422949e-53 | -8.615850e-47 |
| Msa0081780 | Msa0217700 | 0.819567 | 1.085526e-52 | -8.615850e-47 |
| Msa0081780 | Msa0219590 | 0.804749 | 1.860019e-49 | -8.615850e-47 |
| Msa0081780 | Msa0220400 | -0.801500 | 8.744669e-49 | -8.615850e-47 |
| Msa0081780 | Msa0223080 | 0.826760 | 2.272703e-54 | -8.615850e-47 |
| Msa0081780 | Msa0225100 | 0.800693 | 1.278329e-48 | -8.615850e-47 |
| Msa0081780 | Msa0234090 | 0.800040 | 1.736452e-48 | -8.615850e-47 |
| Msa0081780 | Msa0240900 | 0.842089 | 3.199355e-58 | -8.615850e-47 |
| Msa0081780 | Msa0240920 | 0.821750 | 3.420318e-53 | -8.615850e-47 |
| Msa0081780 | Msa0241140 | 0.803121 | 4.054922e-49 | -8.615850e-47 |
| Msa0081780 | Msa0244640 | 0.811242 | 7.719558e-51 | -8.615850e-47 |
| Msa0081780 | Msa0257520 | 0.815146 | 1.073628e-51 | -8.615850e-47 |
| Msa0081780 | Msa0258390 | 0.806590 | 7.642091e-50 | -8.615850e-47 |
| Msa0081780 | Msa0261090 | 0.821754 | 3.413034e-53 | -8.615850e-47 |
| Msa0081780 | Msa0267790 | 0.801996 | 6.918082e-49 | -8.615850e-47 |
| Msa0081780 | Msa0274980 | 0.816288 | 5.973560e-52 | -8.615850e-47 |
| Msa0081780 | Msa0287740 | 0.809682 | 1.676872e-50 | -8.615850e-47 |
| Msa0081780 | Msa0302160 | 0.821168 | 4.659817e-53 | -8.615850e-47 |
| Msa0081780 | Msa0315690 | 0.813768 | 2.165510e-51 | -8.615850e-47 |
| Msa0081780 | Msa0317970 | 0.827899 | 1.212059e-54 | -8.615850e-47 |
| Msa0081780 | Msa0318680 | 0.832323 | 1.009116e-55 | -8.615850e-47 |
| Msa0081780 | Msa0321620 | 0.817561 | 3.093616e-52 | -8.615850e-47 |
| Msa0081780 | Msa0339490 | 0.819000 | 1.461278e-52 | -8.615850e-47 |
| Msa0081780 | Msa0376630 | 0.800511 | 1.392782e-48 | -8.615850e-47 |
| Msa0081780 | Msa0425170 | 0.810948 | 8.939594e-51 | -8.615850e-47 |
| Msa0081780 | Msa0454360 | 0.812148 | 4.904115e-51 | -8.615850e-47 |
| Msa0081780 | Msa0530560 | 0.804865 | 1.759724e-49 | -8.615850e-47 |
| Msa0081780 | Msa0534150 | 0.808521 | 2.973432e-50 | -8.615850e-47 |
| Msa0081780 | Msa0572840 | 0.807351 | 5.274860e-50 | -8.615850e-47 |
| Msa0081780 | Msa0583360 | -0.812058 | 5.130943e-51 | -8.615850e-47 |
| Msa0081780 | Msa0611210 | 0.809182 | 2.146915e-50 | -8.615850e-47 |
| Msa0081780 | Msa0651550 | 0.802829 | 4.658442e-49 | -8.615850e-47 |
| Msa0081780 | Msa0697160 | 0.800259 | 1.567321e-48 | -8.615850e-47 |
| Msa0081780 | Msa0707250 | 0.826063 | 3.330961e-54 | -8.615850e-47 |
| Msa0081780 | Msa0709400 | 0.807052 | 6.102679e-50 | -8.615850e-47 |
| Msa0081780 | Msa0733010 | 0.806271 | 8.920822e-50 | -8.615850e-47 |
| Msa0081780 | Msa0741440 | 0.838491 | 2.786304e-57 | -8.615850e-47 |
| Msa0081780 | Msa0741650 | 0.808425 | 3.117591e-50 | -8.615850e-47 |
| Msa0081780 | Msa0765080 | 0.805574 | 1.250176e-49 | -8.615850e-47 |
| Msa0081780 | Msa0802550 | 0.805340 | 1.399380e-49 | -8.615850e-47 |
| Msa0081780 | Msa0822500 | 0.827299 | 1.689482e-54 | -8.615850e-47 |
| Msa0081780 | Msa0829300 | 0.805440 | 1.333435e-49 | -8.615850e-47 |
| Msa0081780 | Msa0829330 | 0.806566 | 7.729115e-50 | -8.615850e-47 |
| Msa0081780 | Msa0831110 | 0.843625 | 1.248543e-58 | -8.615850e-47 |
| Msa0081780 | Msa0833530 | 0.815412 | 9.367263e-52 | -8.615850e-47 |
| Msa0081780 | Msa0858390 | 0.820709 | 5.941994e-53 | -8.615850e-47 |
| Msa0081780 | Msa0878220 | 0.825235 | 5.236285e-54 | -8.615850e-47 |
| Msa0081780 | Msa0894400 | 0.806834 | 6.785850e-50 | -8.615850e-47 |
| Msa0081780 | Msa0898750 | 0.817758 | 2.793444e-52 | -8.615850e-47 |
| Msa0081780 | Msa0919860 | 0.830974 | 2.170491e-55 | -8.615850e-47 |
| Msa0081780 | Msa0928130 | 0.819663 | 1.031798e-52 | -8.615850e-47 |
| Msa0081780 | Msa0944020 | 0.801544 | 8.564612e-49 | -8.615850e-47 |
| Msa0081780 | Msa0945630 | 0.818206 | 2.211683e-52 | -8.615850e-47 |
| Msa0081780 | Msa0964310 | 0.827658 | 1.385286e-54 | -8.615850e-47 |
| Msa0081780 | Msa0967170 | 0.802399 | 5.716106e-49 | -8.615850e-47 |
| Msa0081780 | Msa1035480 | 0.814818 | 1.269449e-51 | -8.615850e-47 |
| Msa0081780 | Msa1078170 | 0.812985 | 3.218228e-51 | -8.615850e-47 |
| Msa0081780 | Msa1089450 | 0.823888 | 1.086749e-53 | -8.615850e-47 |
| Msa0081780 | Msa1089460 | 0.803274 | 3.769169e-49 | -8.615850e-47 |
| Msa0081780 | Msa1101090 | 0.814275 | 1.673929e-51 | -8.615850e-47 |
| Msa0081780 | Msa1124960 | 0.800768 | 1.234620e-48 | -8.615850e-47 |
| Msa0081780 | Msa1132840 | 0.800928 | 1.144674e-48 | -8.615850e-47 |
| Msa0081780 | Msa1145810 | 0.813304 | 2.738419e-51 | -8.615850e-47 |
| Msa0081780 | Msa1155170 | -0.831203 | 1.906749e-55 | -8.615850e-47 |
| Msa0081780 | Msa1167340 | 0.806941 | 6.441238e-50 | -8.615850e-47 |
| Msa0081780 | Msa1186020 | 0.812089 | 5.052079e-51 | -8.615850e-47 |
| Msa0081780 | Msa1205280 | 0.809348 | 1.977735e-50 | -8.615850e-47 |
| Msa0081780 | Msa1211230 | -0.826724 | 2.318799e-54 | -8.615850e-47 |
| Msa0081780 | Msa1211420 | -0.821761 | 3.400464e-53 | -8.615850e-47 |
| Msa0081780 | Msa1213890 | 0.812967 | 3.248193e-51 | -8.615850e-47 |
| Msa0081780 | Msa1225860 | -0.813354 | 2.670371e-51 | -8.615850e-47 |
| Msa0081780 | Msa1297050 | -0.817179 | 3.771813e-52 | -8.615850e-47 |
| Msa0081780 | Msa1297230 | 0.814323 | 1.633250e-51 | -8.615850e-47 |
| Msa0081780 | Msa1325410 | -0.827683 | 1.365980e-54 | -8.615850e-47 |
| Msa0081780 | Msa1331050 | -0.819116 | 1.374774e-52 | -8.615850e-47 |
| Msa0081780 | Msa1332760 | 0.806518 | 7.911349e-50 | -8.615850e-47 |
| Msa0081780 | Msa1341060 | 0.800596 | 1.338060e-48 | -8.615850e-47 |
| Msa0081780 | Msa1343430 | 0.812387 | 4.349534e-51 | -8.615850e-47 |
| Msa0081780 | Msa1345100 | 0.812544 | 4.018477e-51 | -8.615850e-47 |
| Msa0081780 | Msa1346840 | 0.815284 | 1.000090e-51 | -8.615850e-47 |
| Msa0081780 | Msa1347310 | 0.825663 | 4.146856e-54 | -8.615850e-47 |
| Msa0081780 | Msa1347760 | 0.802800 | 4.723967e-49 | -8.615850e-47 |
| Msa0081780 | Msa1373100 | 0.801434 | 9.019491e-49 | -8.615850e-47 |
| Msa0081780 | Msa1393570 | 0.834125 | 3.592125e-56 | -8.615850e-47 |
| Msa0081780 | Msa1414640 | 0.810027 | 1.413694e-50 | -8.615850e-47 |
| Msa0081780 | Msa1419690 | 0.827992 | 1.151463e-54 | -8.615850e-47 |
| Msa0081780 | Msa1422950 | 0.801698 | 7.964221e-49 | -8.615850e-47 |
| Msa0081780 | Msa1425880 | 0.804549 | 2.047907e-49 | -8.615850e-47 |
| Msa0081780 | Msa1440310 | 0.815012 | 1.149368e-51 | -8.615850e-47 |
| Msa0081780 | Msa1442920 | 0.804733 | 1.874719e-49 | -8.615850e-47 |
| Msa0081780 | Msa1446820 | 0.819087 | 1.395799e-52 | -8.615850e-47 |
| Msa0081780 | Msa1451160 | 0.815012 | 1.149826e-51 | -8.615850e-47 |
| Msa0081780 | Msa1452710 | 0.824862 | 6.414562e-54 | -8.615850e-47 |
| Msa0081780 | Msa1463900 | 0.803877 | 2.826947e-49 | -8.615850e-47 |
| Msa0081780 | Msa1466540 | 0.806222 | 9.136607e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081780 | MtrunA17_Chr1g0194401 | 94.764 | 191 | 4 | 1 | 49 | 239 | 1 | 185 | 7.27e-129 | 363 |
| Msa0081780 | MtrunA17_Chr2g0294131 | 39.474 | 228 | 107 | 7 | 9 | 235 | 7 | 204 | 5.43e-29 | 109 |
| Msa0081780 | MtrunA17_Chr4g0068671 | 32.864 | 213 | 132 | 4 | 14 | 225 | 12 | 214 | 5.43e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081780 | AT1G02380.1 | 31.837 | 245 | 124 | 9 | 10 | 245 | 8 | 218 | 1.65e-24 | 97.8 |
| Msa0081780 | AT3G17120.4 | 42.105 | 133 | 67 | 4 | 112 | 243 | 78 | 201 | 2.23e-16 | 75.9 |
| Msa0081780 | AT3G17120.2 | 42.105 | 133 | 67 | 4 | 112 | 243 | 78 | 201 | 2.23e-16 | 75.9 |
| Msa0081780 | AT3G17120.1 | 42.105 | 133 | 67 | 4 | 112 | 243 | 78 | 201 | 2.23e-16 | 75.9 |
| Msa0081780 | AT3G17120.5 | 42.105 | 133 | 67 | 4 | 112 | 243 | 78 | 201 | 2.23e-16 | 75.9 |
| Msa0081780 | AT3G17120.3 | 42.105 | 133 | 67 | 4 | 112 | 243 | 78 | 201 | 2.23e-16 | 75.9 |
| Msa0081780 | AT4G01960.1 | 28.700 | 223 | 125 | 8 | 9 | 224 | 8 | 203 | 7.02e-16 | 74.7 |
| Msa0081780 | AT4G01960.2 | 28.700 | 223 | 125 | 8 | 9 | 224 | 8 | 203 | 7.02e-16 | 74.7 |
| Msa0081780 | AT4G01960.3 | 29.891 | 184 | 98 | 7 | 9 | 183 | 8 | 169 | 4.34e-14 | 69.3 |
Find 60 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGACTTGTTTGGTAATTT+TGG | 0.141994 | 1_2:-60465150 | Msa0081780:three_prime_UTR |
| TTAGCTAAGACTTTCCTTTC+AGG | 0.215855 | 1_2:-60465580 | Msa0081780:intron |
| TCAACAATAACATCGTTTCT+AGG | 0.240162 | 1_2:-60468609 | Msa0081780:five_prime_UTR |
| CTAGAATTGTTGGTGGATAA+AGG | 0.283179 | 1_2:-60468048 | Msa0081780:CDS |
| GCCTCCTAGAGGTCCATCTT+TGG | 0.299097 | 1_2:-60467947 | Msa0081780:CDS |
| AAAGGTTTAGAACATGTTAA+TGG | 0.299452 | 1_2:-60468030 | Msa0081780:CDS |
| AATGGGGTTATGAATTTAGA+TGG | 0.319095 | 1_2:-60468156 | Msa0081780:CDS |
| GCCAGGTTCATCTCCATTGC+TGG | 0.372215 | 1_2:+60465450 | None:intergenic |
| GAACATGTTAATGGAAATCA+TGG | 0.386666 | 1_2:-60468021 | Msa0081780:CDS |
| AGAGATTCAACTTCAAAGAA+TGG | 0.402293 | 1_2:-60468195 | Msa0081780:CDS |
| GGTATGCAGGAAGGATGATA+TGG | 0.421288 | 1_2:-60465287 | Msa0081780:CDS |
| TTCCTCGTCATCATATTTCA+CGG | 0.422957 | 1_2:-60467763 | Msa0081780:intron |
| TTCGTTCACAATGTGAGTTT+AGG | 0.431483 | 1_2:-60465244 | Msa0081780:three_prime_UTR |
| AAACTAACTGAAATTCCTAA+TGG | 0.432744 | 1_2:+60465181 | None:intergenic |
| GAATTTAGATGGATCAGAAA+AGG | 0.435059 | 1_2:-60468145 | Msa0081780:CDS |
| TTGTTGAAACATTCTTAACT+AGG | 0.456257 | 1_2:+60468625 | None:intergenic |
| AATTTAGATGGATCAGAAAA+GGG | 0.467182 | 1_2:-60468144 | Msa0081780:CDS |
| CAACAATAACATCGTTTCTA+GGG | 0.472288 | 1_2:-60468608 | Msa0081780:five_prime_UTR |
| GACATTGCTGATTTCTCTGA+AGG | 0.481911 | 1_2:-60465061 | Msa0081780:three_prime_UTR |
| TCTGATGCAACAGCTGACTC+AGG | 0.494621 | 1_2:+60465514 | None:intergenic |
| CTATATTGATGCAGGTATGC+AGG | 0.495267 | 1_2:-60465300 | Msa0081780:intron |
| GGGTTCTACCCTTTGACTTG+AGG | 0.495824 | 1_2:-60468588 | Msa0081780:intron |
| CTGCGAGTAGTGCGTCTGTT+GGG | 0.505670 | 1_2:-60465549 | Msa0081780:CDS |
| AGAGGTCCATCTTTGGATGC+TGG | 0.505685 | 1_2:-60467940 | Msa0081780:CDS |
| GTTGAATTTGACATTGAAAG+TGG | 0.538098 | 1_2:-60468255 | Msa0081780:CDS |
| AAGGAGGTACCTCAAGTCAA+AGG | 0.539248 | 1_2:+60468579 | None:intergenic |
| TGCTTGTACAGTGACTTGTT+TGG | 0.541077 | 1_2:-60465159 | Msa0081780:three_prime_UTR |
| TCTGCGAGTAGTGCGTCTGT+TGG | 0.541422 | 1_2:-60465550 | Msa0081780:CDS |
| CTGATGCAACAGCTGACTCA+GGG | 0.544449 | 1_2:+60465515 | None:intergenic |
| ACACTTGGAAAGTGAGAGCC+AGG | 0.544538 | 1_2:+60465433 | None:intergenic |
| TGATCACCAGCATCCAAAGA+TGG | 0.549760 | 1_2:+60467934 | None:intergenic |
| GCATCCAAAGATGGACCTCT+AGG | 0.550353 | 1_2:+60467943 | None:intergenic |
| ACGAACTTCAACACCAGCAA+TGG | 0.552140 | 1_2:-60465463 | Msa0081780:CDS |
| TGAATGTAATCTAGAATTGT+TGG | 0.565076 | 1_2:-60468058 | Msa0081780:CDS |
| AGGAGGTACCTCAAGTCAAA+GGG | 0.570753 | 1_2:+60468580 | None:intergenic |
| TCGCAGATTTGATTCCTGAA+AGG | 0.573354 | 1_2:+60465566 | None:intergenic |
| ATATACAAATCTTTCTGCCA+TGG | 0.581731 | 1_2:-60467803 | Msa0081780:CDS |
| GATGGACCTCTAGGAGGCAA+AGG | 0.587737 | 1_2:+60467952 | None:intergenic |
| TATATAATCGAATACACACT+TGG | 0.593154 | 1_2:+60465418 | None:intergenic |
| TTGCGTTGAGGAAGCGTGCG+AGG | 0.596295 | 1_2:-60467885 | Msa0081780:CDS |
| TTGTTGTCTTTGATCCACCT+TGG | 0.605259 | 1_2:-60465094 | Msa0081780:three_prime_UTR |
| TTGCTGGTGTTGAAGTTCGT+AGG | 0.609539 | 1_2:+60465466 | None:intergenic |
| TTTGTATATGTCGAAGACGA+CGG | 0.611177 | 1_2:+60467817 | None:intergenic |
| ATGTAATCTAGAATTGTTGG+TGG | 0.614154 | 1_2:-60468055 | Msa0081780:CDS |
| ACCAGCAATGGAGATGAACC+TGG | 0.617162 | 1_2:-60465451 | Msa0081780:CDS |
| GGACCTCTAGGAGGCAAAGG+TGG | 0.627162 | 1_2:+60467955 | None:intergenic |
| TCAGCTGTTGCATCAGACGA+AGG | 0.631536 | 1_2:-60465508 | Msa0081780:CDS |
| AGGAATGTGTTGATGCACGC+AGG | 0.636801 | 1_2:+60468645 | None:intergenic |
| ATTGATGCAGGTATGCAGGA+AGG | 0.637045 | 1_2:-60465296 | Msa0081780:intron |
| TGGTGAAAACACGAGCGAAG+AGG | 0.655654 | 1_2:-60468235 | Msa0081780:CDS |
| TACCGTGAAATATGATGACG+AGG | 0.663224 | 1_2:+60467761 | None:intergenic |
| ATAACCCCATTCCATGACCA+AGG | 0.663825 | 1_2:+60468168 | None:intergenic |
| TGGTGATCATAAATTTGTGA+AGG | 0.670977 | 1_2:-60467920 | Msa0081780:CDS |
| AAGCCACCTTTGCCTCCTAG+AGG | 0.671952 | 1_2:-60467958 | Msa0081780:CDS |
| TCCAAAGATGGACCTCTAGG+AGG | 0.675340 | 1_2:+60467946 | None:intergenic |
| AATTAGCTGAGCTTGCGTTG+AGG | 0.678634 | 1_2:-60467897 | Msa0081780:CDS |
| TAAACTCACATTGTGAACGA+AGG | 0.687000 | 1_2:+60465246 | None:intergenic |
| TGTCATCATCATCACCAAGG+TGG | 0.692675 | 1_2:+60465080 | None:intergenic |
| TGATGCAACAGCTGACTCAG+GGG | 0.699610 | 1_2:+60465516 | None:intergenic |
| CAATGTCATCATCATCACCA+AGG | 0.699988 | 1_2:+60465077 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAAAAATTGAATCTT+TGG | - | chr1_2:60465381-60465400 | Msa0081780:intron | 10.0% |
| !! | TTATTCATAATTACTTAAAT+AGG | - | chr1_2:60467666-60467685 | Msa0081780:intron | 10.0% |
| !! | TAAAAAAAGACAAGAATTTA+AGG | + | chr1_2:60465109-60465128 | None:intergenic | 15.0% |
| !!! | TTGAAATTGATTTAATTAGA+TGG | - | chr1_2:60465511-60465530 | Msa0081780:CDS | 15.0% |
| !!! | TGAAATTGATTTAATTAGAT+GGG | - | chr1_2:60465512-60465531 | Msa0081780:CDS | 15.0% |
| !! | AAAAAGTAAAAAGTTTGTAT+AGG | + | chr1_2:60466657-60466676 | None:intergenic | 15.0% |
| !!! | TCGTTTTTTCAAATTATTAT+CGG | - | chr1_2:60467961-60467980 | Msa0081780:CDS | 15.0% |
| !! | AAAAGAAGATGAAGAAAAAA+GGG | + | chr1_2:60465273-60465292 | None:intergenic | 20.0% |
| !! | AATACAAAAGATTACGTATA+TGG | + | chr1_2:60466228-60466247 | None:intergenic | 20.0% |
| !! | TACAAATACAATTGAATTCT+AGG | + | chr1_2:60466447-60466466 | None:intergenic | 20.0% |
| !!! | TTACTTTTTCAACTCTTATA+AGG | - | chr1_2:60466668-60466687 | Msa0081780:intron | 20.0% |
| !!! | TCCTTTATAAATTTTCATTG+TGG | - | chr1_2:60467126-60467145 | Msa0081780:intron | 20.0% |
| !! | ACCACAATGAAAATTTATAA+AGG | + | chr1_2:60467130-60467149 | None:intergenic | 20.0% |
| !! | TAAAGATGTTCATATGAAAT+AGG | + | chr1_2:60467395-60467414 | None:intergenic | 20.0% |
| !! | TGGGAAAAATTATGTATATA+TGG | - | chr1_2:60468448-60468467 | Msa0081780:intron | 20.0% |
| !!! | TGGCAATGTTTTTTAAAAAA+AGG | - | chr1_2:60468691-60468710 | Msa0081780:five_prime_UTR | 20.0% |
| !!! | AGGTTTTTCGGTTTTATTAA+TGG | + | chr1_2:60465089-60465108 | None:intergenic | 25.0% |
| !!! | GACAAGAATTTAAGGTTTTT+CGG | + | chr1_2:60465101-60465120 | None:intergenic | 25.0% |
| ! | TTGTTGAAACATTCTTAACT+AGG | + | chr1_2:60465199-60465218 | None:intergenic | 25.0% |
| ! | AAAGAAGATGAAGAAAAAAG+GGG | + | chr1_2:60465272-60465291 | None:intergenic | 25.0% |
| ! | GAAAAGAAGATGAAGAAAAA+AGG | + | chr1_2:60465274-60465293 | None:intergenic | 25.0% |
| ! | TCAAAGAGAAAAAGAAAAAG+AGG | - | chr1_2:60465544-60465563 | Msa0081780:CDS | 25.0% |
| ! | AATTTAGATGGATCAGAAAA+GGG | - | chr1_2:60465677-60465696 | Msa0081780:intron | 25.0% |
| !! | TCAAATTCTTGTGATGTTTT+TGG | - | chr1_2:60465734-60465753 | Msa0081780:intron | 25.0% |
| !! | TGAATGTAATCTAGAATTGT+TGG | - | chr1_2:60465763-60465782 | Msa0081780:intron | 25.0% |
| !! | AAAGGTTTAGAACATGTTAA+TGG | - | chr1_2:60465791-60465810 | Msa0081780:intron | 25.0% |
| !! | TAAATTACATGTTCTTTTGC+TGG | - | chr1_2:60466081-60466100 | Msa0081780:intron | 25.0% |
| !! | AAATTACATGTTCTTTTGCT+GGG | - | chr1_2:60466082-60466101 | Msa0081780:intron | 25.0% |
| ! | GTTCATATATATTTCACATG+CGG | - | chr1_2:60466331-60466350 | Msa0081780:intron | 25.0% |
| !!! | TTTTGAAATCAAATCTGCAT+AGG | - | chr1_2:60466715-60466734 | Msa0081780:intron | 25.0% |
| !!! | TTAGTTGTTTTATAGCTATG+AGG | - | chr1_2:60466870-60466889 | Msa0081780:intron | 25.0% |
| !!! | TAGTTGTTTTATAGCTATGA+GGG | - | chr1_2:60466871-60466890 | Msa0081780:intron | 25.0% |
| ! | GAAATGATTATTCAGTATCA+GGG | + | chr1_2:60466901-60466920 | None:intergenic | 25.0% |
| ! | TGAAATGATTATTCAGTATC+AGG | + | chr1_2:60466902-60466921 | None:intergenic | 25.0% |
| ! | CGAATGTACATTATATCATA+AGG | - | chr1_2:60466949-60466968 | Msa0081780:intron | 25.0% |
| !! | TATGAAATAGGCTTTTAAAC+AGG | + | chr1_2:60467383-60467402 | None:intergenic | 25.0% |
| ! | TAATTGATATATTAGTTCGC+TGG | + | chr1_2:60467448-60467467 | None:intergenic | 25.0% |
| !! | ATAATCAACATGAGTTTTCA+GGG | - | chr1_2:60467485-60467504 | Msa0081780:intron | 25.0% |
| ! | TCATAATTACTTAAATAGGC+CGG | - | chr1_2:60467670-60467689 | Msa0081780:intron | 25.0% |
| !! | AAAAGCCTATTTAGCTTAAT+AGG | + | chr1_2:60467738-60467757 | None:intergenic | 25.0% |
| !!! | GCTTTTTTCTTAAATAGAGA+AGG | + | chr1_2:60467774-60467793 | None:intergenic | 25.0% |
| ! | TCAGTTAATTCAAACTCAAT+TGG | - | chr1_2:60468140-60468159 | Msa0081780:CDS | 25.0% |
| ! | TATATAATCGAATACACACT+TGG | + | chr1_2:60468406-60468425 | None:intergenic | 25.0% |
| ! | AAACTAACTGAAATTCCTAA+TGG | + | chr1_2:60468643-60468662 | None:intergenic | 25.0% |
| CAAAAAGAGAGAAAAACCAT+TGG | - | chr1_2:60465063-60465082 | Msa0081780:three_prime_UTR | 30.0% | |
| TCAACAATAACATCGTTTCT+AGG | - | chr1_2:60465212-60465231 | Msa0081780:three_prime_UTR | 30.0% | |
| CAACAATAACATCGTTTCTA+GGG | - | chr1_2:60465213-60465232 | Msa0081780:three_prime_UTR | 30.0% | |
| AAGAAGATGAAGAAAAAAGG+GGG | + | chr1_2:60465271-60465290 | None:intergenic | 30.0% | |
| !!! | GGGTTTTGTTTTTGAGTAAT+TGG | - | chr1_2:60465418-60465437 | Msa0081780:intron | 30.0% |
| TCTTTAGCATGATTATGAGA+TGG | - | chr1_2:60465469-60465488 | Msa0081780:CDS | 30.0% | |
| CTTTAGCATGATTATGAGAT+GGG | - | chr1_2:60465470-60465489 | Msa0081780:CDS | 30.0% | |
| GTTGAATTTGACATTGAAAG+TGG | - | chr1_2:60465566-60465585 | Msa0081780:CDS | 30.0% | |
| AGAGATTCAACTTCAAAGAA+TGG | - | chr1_2:60465626-60465645 | Msa0081780:intron | 30.0% | |
| AATGGGGTTATGAATTTAGA+TGG | - | chr1_2:60465665-60465684 | Msa0081780:intron | 30.0% | |
| GAATTTAGATGGATCAGAAA+AGG | - | chr1_2:60465676-60465695 | Msa0081780:intron | 30.0% | |
| ! | ATGTAATCTAGAATTGTTGG+TGG | - | chr1_2:60465766-60465785 | Msa0081780:intron | 30.0% |
| GAACATGTTAATGGAAATCA+TGG | - | chr1_2:60465800-60465819 | Msa0081780:intron | 30.0% | |
| TGGTGATCATAAATTTGTGA+AGG | - | chr1_2:60465901-60465920 | Msa0081780:intron | 30.0% | |
| ATATACAAATCTTTCTGCCA+TGG | - | chr1_2:60466018-60466037 | Msa0081780:intron | 30.0% | |
| GAAAAAAATAGTGATGACCA+TGG | + | chr1_2:60466038-60466057 | None:intergenic | 30.0% | |
| CATATGCTTACATCTCAAAT+TGG | - | chr1_2:60466195-60466214 | Msa0081780:intron | 30.0% | |
| TGATATAGAACACAAGAATC+AGG | + | chr1_2:60466393-60466412 | None:intergenic | 30.0% | |
| ! | AATTCTTGTGTTAAGTTGCA+AGG | - | chr1_2:60466418-60466437 | Msa0081780:intron | 30.0% |
| TTCTGCTACATCTCAAAATA+TGG | - | chr1_2:60466488-60466507 | Msa0081780:intron | 30.0% | |
| CTTAAGATTGATGTTAGTTG+TGG | + | chr1_2:60466530-60466549 | None:intergenic | 30.0% | |
| TCTATATCTATGTGATGACT+AGG | + | chr1_2:60466597-60466616 | None:intergenic | 30.0% | |
| TAGTCATCACATAGATATAG+AGG | - | chr1_2:60466596-60466615 | Msa0081780:intron | 30.0% | |
| TAGATATAGAGGATATCACT+TGG | - | chr1_2:60466607-60466626 | Msa0081780:intron | 30.0% | |
| AGATATAGAGGATATCACTT+GGG | - | chr1_2:60466608-60466627 | Msa0081780:intron | 30.0% | |
| TCATTTCACATTATACAGAG+TGG | - | chr1_2:60466914-60466933 | Msa0081780:intron | 30.0% | |
| !! | ATTATACAGAGTGGATTTTG+TGG | - | chr1_2:60466923-60466942 | Msa0081780:intron | 30.0% |
| GTAATTCACAATTACAGAAG+TGG | + | chr1_2:60467009-60467028 | None:intergenic | 30.0% | |
| TGTTCAATCAAGATTGAAGA+AGG | + | chr1_2:60467031-60467050 | None:intergenic | 30.0% | |
| AAAGAATATCAACAAGTCCT+TGG | + | chr1_2:60467083-60467102 | None:intergenic | 30.0% | |
| ! | GATAATCAACATGAGTTTTC+AGG | - | chr1_2:60467484-60467503 | Msa0081780:intron | 30.0% |
| !! | ATAGGCTTTTAAAAAAGCCT+AGG | - | chr1_2:60467748-60467767 | Msa0081780:intron | 30.0% |
| CTCTATTTAAGAAAAAAGCC+TGG | - | chr1_2:60467775-60467794 | Msa0081780:CDS | 30.0% | |
| TTTATCCTTATCGTTGCATA+GGG | + | chr1_2:60467864-60467883 | None:intergenic | 30.0% | |
| TGTGTTTCATAGAGGATAAT+TGG | - | chr1_2:60468028-60468047 | Msa0081780:CDS | 30.0% | |
| TCATTTGTCTATATTGATGC+AGG | - | chr1_2:60468513-60468532 | Msa0081780:intron | 30.0% | |
| !!! | AGTGACTTGTTTGGTAATTT+TGG | - | chr1_2:60468671-60468690 | Msa0081780:five_prime_UTR | 30.0% |
| !!! | TCGGTTTTATTAATGGCCAA+TGG | + | chr1_2:60465082-60465101 | None:intergenic | 35.0% |
| AGAAGATGAAGAAAAAAGGG+GGG | + | chr1_2:60465270-60465289 | None:intergenic | 35.0% | |
| TCTTTGGCATGATTGTGAAA+TGG | - | chr1_2:60465397-60465416 | Msa0081780:intron | 35.0% | |
| CTTTGGCATGATTGTGAAAT+GGG | - | chr1_2:60465398-60465417 | Msa0081780:intron | 35.0% | |
| ! | CTTCAAAGAATGGTTTTCCT+TGG | - | chr1_2:60465636-60465655 | Msa0081780:intron | 35.0% |
| GGATCAGAAAAGGGTAAAAA+TGG | - | chr1_2:60465686-60465705 | Msa0081780:intron | 35.0% | |
| ! | CTAGAATTGTTGGTGGATAA+AGG | - | chr1_2:60465773-60465792 | Msa0081780:intron | 35.0% |
| TTTGTATATGTCGAAGACGA+CGG | + | chr1_2:60466007-60466026 | None:intergenic | 35.0% | |
| TTCCTCGTCATCATATTTCA+CGG | - | chr1_2:60466058-60466077 | Msa0081780:intron | 35.0% | |
| !! | TGAGCATTGATTACAGCATA+TGG | + | chr1_2:60466116-60466135 | None:intergenic | 35.0% |
| TGCTGTAATCAATGCTCATT+TGG | - | chr1_2:60466118-60466137 | Msa0081780:intron | 35.0% | |
| GATATAGAGGATATCACTTG+GGG | - | chr1_2:60466609-60466628 | Msa0081780:intron | 35.0% | |
| CATTTGTCTTGAATCTGCAA+TGG | - | chr1_2:60466839-60466858 | Msa0081780:intron | 35.0% | |
| GTCCTTTATGCTACAACTTT+AGG | + | chr1_2:60467177-60467196 | None:intergenic | 35.0% | |
| GCATAAAGGACACTAACATA+TGG | - | chr1_2:60467186-60467205 | Msa0081780:intron | 35.0% | |
| TACTACTTTGTTGAAGTGGA+TGG | - | chr1_2:60467212-60467231 | Msa0081780:intron | 35.0% | |
| ACTACTTTGTTGAAGTGGAT+GGG | - | chr1_2:60467213-60467232 | Msa0081780:intron | 35.0% | |
| ! | GCTTAGGCCTTCTAAAAAAT+TGG | + | chr1_2:60467285-60467304 | None:intergenic | 35.0% |
| CTAAAAAGTAAGCCTATGAC+AGG | + | chr1_2:60467319-60467338 | None:intergenic | 35.0% | |
| !!! | CTGTCATAGGCTTACTTTTT+AGG | - | chr1_2:60467317-60467336 | Msa0081780:intron | 35.0% |
| !! | AAAAGCCTTTTTGGCCTATT+AGG | + | chr1_2:60467696-60467715 | None:intergenic | 35.0% |
| ! | AGCCATTCAAAAAGCCTTTT+TGG | + | chr1_2:60467705-60467724 | None:intergenic | 35.0% |
| TTCTTAAATAGAGAAGGCCT+AGG | + | chr1_2:60467768-60467787 | None:intergenic | 35.0% | |
| TTTAAGAAAAAAGCCTGGCA+TGG | - | chr1_2:60467780-60467799 | Msa0081780:CDS | 35.0% | |
| GTTTATCCTTATCGTTGCAT+AGG | + | chr1_2:60467865-60467884 | None:intergenic | 35.0% | |
| ! | ACAGCTTCAATCAAAAGTGT+AGG | + | chr1_2:60467897-60467916 | None:intergenic | 35.0% |
| GTGTTGAATGTAACATGTGT+CGG | + | chr1_2:60467939-60467958 | None:intergenic | 35.0% | |
| TAGAGGATAATTGGATGTCT+AGG | - | chr1_2:60468037-60468056 | Msa0081780:CDS | 35.0% | |
| CAATGTCAGATGAGTTTGAT+AGG | + | chr1_2:60468084-60468103 | None:intergenic | 35.0% | |
| TTAGCTAAGACTTTCCTTTC+AGG | - | chr1_2:60468241-60468260 | Msa0081780:CDS | 35.0% | |
| TAAACTCACATTGTGAACGA+AGG | + | chr1_2:60468578-60468597 | None:intergenic | 35.0% | |
| TTCGTTCACAATGTGAGTTT+AGG | - | chr1_2:60468577-60468596 | Msa0081780:intron | 35.0% | |
| ! | AGAATGGTTTTCCTTGGTCA+TGG | - | chr1_2:60465642-60465661 | Msa0081780:intron | 40.0% |
| ! | GTTTTCCTTGGTCATGGAAT+GGG | - | chr1_2:60465648-60465667 | Msa0081780:intron | 40.0% |
| ! | TTTTCCTTGGTCATGGAATG+GGG | - | chr1_2:60465649-60465668 | Msa0081780:intron | 40.0% |
| ! | TACCGTGAAATATGATGACG+AGG | + | chr1_2:60466063-60466082 | None:intergenic | 40.0% |
| AGAAACTTACTACAGTGCCA+AGG | - | chr1_2:60467063-60467082 | Msa0081780:intron | 40.0% | |
| ! | TGTTGTCTTTCTGCTCTGAA+AGG | - | chr1_2:60467150-60467169 | Msa0081780:intron | 40.0% |
| !! | GTTGTCTTTCTGCTCTGAAA+GGG | - | chr1_2:60467151-60467170 | Msa0081780:intron | 40.0% |
| GGCCTAAAGTTGTAGCATAA+AGG | - | chr1_2:60467172-60467191 | Msa0081780:intron | 40.0% | |
| GTCGTACTACTTTGTTGAAG+TGG | - | chr1_2:60467208-60467227 | Msa0081780:intron | 40.0% | |
| TTGTTGAAGTGGATGGGAAT+AGG | - | chr1_2:60467219-60467238 | Msa0081780:intron | 40.0% | |
| !!! | TGGCCTGCCAATTTTTTAGA+AGG | - | chr1_2:60467275-60467294 | Msa0081780:intron | 40.0% |
| ! | AGGCCTTCTAAAAAATTGGC+AGG | + | chr1_2:60467281-60467300 | None:intergenic | 40.0% |
| !!! | TTTTTTAGAAGGCCTAAGCC+TGG | - | chr1_2:60467286-60467305 | Msa0081780:intron | 40.0% |
| ! | GGCCAAAAAGGCTTTTTGAA+TGG | - | chr1_2:60467700-60467719 | Msa0081780:intron | 40.0% |
| ! | AAGGCTTTTTGAATGGCTTG+TGG | - | chr1_2:60467707-60467726 | Msa0081780:intron | 40.0% |
| ! | CCTATTTAGCTTAATAGGCC+AGG | + | chr1_2:60467733-60467752 | None:intergenic | 40.0% |
| CCTGGCCTATTAAGCTAAAT+AGG | - | chr1_2:60467730-60467749 | Msa0081780:intron | 40.0% | |
| TCCATGTCTGTGTTTCATAG+AGG | - | chr1_2:60468020-60468039 | Msa0081780:CDS | 40.0% | |
| TCCTCTATGAAACACAGACA+TGG | + | chr1_2:60468024-60468043 | None:intergenic | 40.0% | |
| TCGCAGATTTGATTCCTGAA+AGG | + | chr1_2:60468258-60468277 | None:intergenic | 40.0% | |
| ! | TCTTTTCCAAAGCTGTGCAA+TGG | - | chr1_2:60468428-60468447 | Msa0081780:intron | 40.0% |
| ! | CTTTTCCAAAGCTGTGCAAT+GGG | - | chr1_2:60468429-60468448 | Msa0081780:intron | 40.0% |
| ! | TTTTTCCCATTGCACAGCTT+TGG | + | chr1_2:60468437-60468456 | None:intergenic | 40.0% |
| CTATATTGATGCAGGTATGC+AGG | - | chr1_2:60468521-60468540 | Msa0081780:intron | 40.0% | |
| ! | TGTGCTTTTGTACAGCCATT+AGG | - | chr1_2:60468625-60468644 | Msa0081780:five_prime_UTR | 40.0% |
| !! | TGCTTGTACAGTGACTTGTT+TGG | - | chr1_2:60468662-60468681 | Msa0081780:five_prime_UTR | 40.0% |
| TTGTTGTCTTTGATCCACCT+TGG | - | chr1_2:60468727-60468746 | Msa0081780:five_prime_UTR | 40.0% | |
| CAATGTCATCATCATCACCA+AGG | + | chr1_2:60468747-60468766 | None:intergenic | 40.0% | |
| !! | GACATTGCTGATTTCTCTGA+AGG | - | chr1_2:60468760-60468779 | Msa0081780:five_prime_UTR | 40.0% |
| !! | AGGAGGTACCTCAAGTCAAA+GGG | + | chr1_2:60465244-60465263 | None:intergenic | 45.0% |
| !! | AAGGAGGTACCTCAAGTCAA+AGG | + | chr1_2:60465245-60465264 | None:intergenic | 45.0% |
| TGAAGAAAAAAGGGGGGTCA+AGG | + | chr1_2:60465264-60465283 | None:intergenic | 45.0% | |
| ! | GGTTTTCCTTGGTCATGGAA+TGG | - | chr1_2:60465647-60465666 | Msa0081780:intron | 45.0% |
| ATAACCCCATTCCATGACCA+AGG | + | chr1_2:60465656-60465675 | None:intergenic | 45.0% | |
| TGATCACCAGCATCCAAAGA+TGG | + | chr1_2:60465890-60465909 | None:intergenic | 45.0% | |
| AATTAGCTGAGCTTGCGTTG+AGG | - | chr1_2:60465924-60465943 | Msa0081780:intron | 45.0% | |
| AGCTGCCTGTATCAGTACAT+TGG | - | chr1_2:60466304-60466323 | Msa0081780:intron | 45.0% | |
| ! | CCAAGCCAATGTACTGATAC+AGG | + | chr1_2:60466312-60466331 | None:intergenic | 45.0% |
| ! | CCTGTATCAGTACATTGGCT+TGG | - | chr1_2:60466309-60466328 | Msa0081780:intron | 45.0% |
| CATGCGGCTCTTCTAACATT+TGG | - | chr1_2:60466347-60466366 | Msa0081780:intron | 45.0% | |
| AAGCCTTACAAAGCCTAGCT+CGG | + | chr1_2:60467250-60467269 | None:intergenic | 45.0% | |
| !!! | TTACTTTTTAGGCCTGAGCC+TGG | - | chr1_2:60467328-60467347 | Msa0081780:intron | 45.0% |
| ! | AGGCTTTTAAACAGGCTAGC+AGG | + | chr1_2:60467375-60467394 | None:intergenic | 45.0% |
| CTTAAATAGGCCGGCCTAAT+AGG | - | chr1_2:60467679-60467698 | Msa0081780:intron | 45.0% | |
| !! | TTTTTGAATGGCTTGTGGCC+TGG | - | chr1_2:60467712-60467731 | Msa0081780:intron | 45.0% |
| CCTTATCGTTGCATAGGGAT+GGG | + | chr1_2:60467859-60467878 | None:intergenic | 45.0% | |
| TCCTTATCGTTGCATAGGGA+TGG | + | chr1_2:60467860-60467879 | None:intergenic | 45.0% | |
| ACGACACGACACTAACACAT+CGG | + | chr1_2:60467989-60468008 | None:intergenic | 45.0% | |
| ! | TTGCTGGTGTTGAAGTTCGT+AGG | + | chr1_2:60468358-60468377 | None:intergenic | 45.0% |
| ACGAACTTCAACACCAGCAA+TGG | - | chr1_2:60468358-60468377 | Msa0081780:intron | 45.0% | |
| ATTGATGCAGGTATGCAGGA+AGG | - | chr1_2:60468525-60468544 | Msa0081780:intron | 45.0% | |
| GGTATGCAGGAAGGATGATA+TGG | - | chr1_2:60468534-60468553 | Msa0081780:intron | 45.0% | |
| TGTCATCATCATCACCAAGG+TGG | + | chr1_2:60468744-60468763 | None:intergenic | 45.0% | |
| ! | AGGAATGTGTTGATGCACGC+AGG | + | chr1_2:60465179-60465198 | None:intergenic | 50.0% |
| !! | GGGTTCTACCCTTTGACTTG+AGG | - | chr1_2:60465233-60465252 | Msa0081780:three_prime_UTR | 50.0% |
| AGAAAAAAGGGGGGTCAAGG+AGG | + | chr1_2:60465261-60465280 | None:intergenic | 50.0% | |
| TGGTGAAAACACGAGCGAAG+AGG | - | chr1_2:60465586-60465605 | Msa0081780:intron | 50.0% | |
| !!! | GGTGGCTTTTGAGGCTTTCT+TGG | + | chr1_2:60465851-60465870 | None:intergenic | 50.0% |
| TCCAAAGATGGACCTCTAGG+AGG | + | chr1_2:60465878-60465897 | None:intergenic | 50.0% | |
| GCATCCAAAGATGGACCTCT+AGG | + | chr1_2:60465881-60465900 | None:intergenic | 50.0% | |
| AGAGGTCCATCTTTGGATGC+TGG | - | chr1_2:60465881-60465900 | Msa0081780:intron | 50.0% | |
| TGAAGTGGATGGGAATAGGC+TGG | - | chr1_2:60467223-60467242 | Msa0081780:intron | 50.0% | |
| GAAGTGGATGGGAATAGGCT+GGG | - | chr1_2:60467224-60467243 | Msa0081780:intron | 50.0% | |
| ! | GGCTTTGTAAGGCTTGAGCT+TGG | - | chr1_2:60467255-60467274 | Msa0081780:intron | 50.0% |
| TATCAGGCTTTCAGAAGGCC+AGG | + | chr1_2:60467349-60467368 | None:intergenic | 50.0% | |
| ! | GGCCTTCTGAAAGCCTGATA+CGG | - | chr1_2:60467349-60467368 | Msa0081780:intron | 50.0% |
| !! | GCCTTTTTGGCCTATTAGGC+CGG | + | chr1_2:60467692-60467711 | None:intergenic | 50.0% |
| CGTTGCATAGGGATGGGAAT+AGG | + | chr1_2:60467853-60467872 | None:intergenic | 50.0% | |
| CCCATCCCTATGCAACGATA+AGG | - | chr1_2:60467856-60467875 | Msa0081780:CDS | 50.0% | |
| TAGTGTCGTGTCGTCGTGTT+AGG | - | chr1_2:60467995-60468014 | Msa0081780:CDS | 50.0% | |
| ! | TGATGCAACAGCTGACTCAG+GGG | + | chr1_2:60468308-60468327 | None:intergenic | 50.0% |
| ! | CTGATGCAACAGCTGACTCA+GGG | + | chr1_2:60468309-60468328 | None:intergenic | 50.0% |
| ! | TCTGATGCAACAGCTGACTC+AGG | + | chr1_2:60468310-60468329 | None:intergenic | 50.0% |
| TCAGCTGTTGCATCAGACGA+AGG | - | chr1_2:60468313-60468332 | Msa0081780:intron | 50.0% | |
| ACCAGCAATGGAGATGAACC+TGG | - | chr1_2:60468370-60468389 | Msa0081780:intron | 50.0% | |
| ACACTTGGAAAGTGAGAGCC+AGG | + | chr1_2:60468391-60468410 | None:intergenic | 50.0% | |
| ! | GGAGGCAAAGGTGGCTTTTG+AGG | + | chr1_2:60465860-60465879 | None:intergenic | 55.0% |
| AAGCCACCTTTGCCTCCTAG+AGG | - | chr1_2:60465863-60465882 | Msa0081780:intron | 55.0% | |
| ! | GATGGACCTCTAGGAGGCAA+AGG | + | chr1_2:60465872-60465891 | None:intergenic | 55.0% |
| GCCTCCTAGAGGTCCATCTT+TGG | - | chr1_2:60465874-60465893 | Msa0081780:intron | 55.0% | |
| GGCCGTATCAGGCTTTCAGA+AGG | + | chr1_2:60467354-60467373 | None:intergenic | 55.0% | |
| GCCGGCCTAATAGGCCAAAA+AGG | - | chr1_2:60467688-60467707 | Msa0081780:intron | 55.0% | |
| GAAAAAAGCCTGGCATGGCC+TGG | - | chr1_2:60467785-60467804 | Msa0081780:CDS | 55.0% | |
| CATAGGGATGGGAATAGGCC+AGG | + | chr1_2:60467848-60467867 | None:intergenic | 55.0% | |
| GTCGGACACTGACACGTGTT+AGG | + | chr1_2:60467921-60467940 | None:intergenic | 55.0% | |
| TCTGCGAGTAGTGCGTCTGT+TGG | - | chr1_2:60468271-60468290 | Msa0081780:CDS | 55.0% | |
| CTGCGAGTAGTGCGTCTGTT+GGG | - | chr1_2:60468272-60468291 | Msa0081780:CDS | 55.0% | |
| GCCAGGTTCATCTCCATTGC+TGG | + | chr1_2:60468374-60468393 | None:intergenic | 55.0% | |
| ! | GGACCTCTAGGAGGCAAAGG+TGG | + | chr1_2:60465869-60465888 | None:intergenic | 60.0% |
| ! | TTGCGTTGAGGAAGCGTGCG+AGG | - | chr1_2:60465936-60465955 | Msa0081780:intron | 60.0% |
| ! | GGGCCGAGCTAGGCTTTGTA+AGG | - | chr1_2:60467244-60467263 | Msa0081780:intron | 60.0% |
| GTAAGCCTATGACAGGCCGC+AGG | + | chr1_2:60467312-60467331 | None:intergenic | 60.0% | |
| GCTTTCAGAAGGCCAGGCTC+AGG | + | chr1_2:60467343-60467362 | None:intergenic | 60.0% | |
| ACAGGCTAGCAGGCCGTATC+AGG | + | chr1_2:60467365-60467384 | None:intergenic | 60.0% | |
| CCTATGGCCTAGCCTACGAC+AGG | + | chr1_2:60467811-60467830 | None:intergenic | 60.0% | |
| CCTGTCGTAGGCTAGGCCAT+AGG | - | chr1_2:60467808-60467827 | Msa0081780:CDS | 60.0% | |
| GGAATAGGCTGGGCCGAGCT+AGG | - | chr1_2:60467234-60467253 | Msa0081780:intron | 65.0% | |
| GAAGGCCTAAGCCTGGCCTG+CGG | - | chr1_2:60467293-60467312 | Msa0081780:intron | 65.0% | |
| GCTAGGCCATAGGCCCCTGT+AGG | - | chr1_2:60467818-60467837 | Msa0081780:CDS | 65.0% | |
| ATAGGCCAGGCCGGCCTACA+GGG | + | chr1_2:60467835-60467854 | None:intergenic | 65.0% | |
| AATAGGCCAGGCCGGCCTAC+AGG | + | chr1_2:60467836-60467855 | None:intergenic | 65.0% | |
| GGGATGGGAATAGGCCAGGC+CGG | + | chr1_2:60467844-60467863 | None:intergenic | 65.0% | |
| ACAGGCCGCAGGCCAGGCTT+AGG | + | chr1_2:60467301-60467320 | None:intergenic | 70.0% | |
| CCTATGACAGGCCGCAGGCC+AGG | + | chr1_2:60467307-60467326 | None:intergenic | 70.0% | |
| CCTGGCCTGCGGCCTGTCAT+AGG | - | chr1_2:60467304-60467323 | Msa0081780:intron | 70.0% | |
| ACGACAGGCCAGGCCATGCC+AGG | + | chr1_2:60467796-60467815 | None:intergenic | 70.0% | |
| GGCATGGCCTGGCCTGTCGT+AGG | - | chr1_2:60467796-60467815 | Msa0081780:CDS | 70.0% | |
| GGCCTGGCCTGTCGTAGGCT+AGG | - | chr1_2:60467801-60467820 | Msa0081780:CDS | 70.0% | |
| GGCCTAGCCTACGACAGGCC+AGG | + | chr1_2:60467806-60467825 | None:intergenic | 70.0% | |
| GGCCATAGGCCCCTGTAGGC+CGG | - | chr1_2:60467822-60467841 | Msa0081780:CDS | 70.0% | |
| TAGGCCAGGCCGGCCTACAG+GGG | + | chr1_2:60467834-60467853 | None:intergenic | 70.0% | |
| GGCCGGCCTACAGGGGCCTA+TGG | + | chr1_2:60467827-60467846 | None:intergenic | 75.0% | |
| TAGGCCCCTGTAGGCCGGCC+TGG | - | chr1_2:60467827-60467846 | Msa0081780:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 60465058 | 60468785 | 60465058 | ID=Msa0081780;Name=Msa0081780 |
| chr1_2 | mRNA | 60465058 | 60468785 | 60465058 | ID=Msa0081780-mRNA-1;Parent=Msa0081780;Name=Msa0081780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=197|0.33|0.75|1|0.66|0.75|4|220|248 |
| chr1_2 | exon | 60465058 | 60465308 | 60465058 | ID=Msa0081780-mRNA-1:exon:19699;Parent=Msa0081780-mRNA-1 |
| chr1_2 | exon | 60465433 | 60465598 | 60465433 | ID=Msa0081780-mRNA-1:exon:19698;Parent=Msa0081780-mRNA-1 |
| chr1_2 | exon | 60467764 | 60468313 | 60467764 | ID=Msa0081780-mRNA-1:exon:19697;Parent=Msa0081780-mRNA-1 |
| chr1_2 | exon | 60468589 | 60468785 | 60468589 | ID=Msa0081780-mRNA-1:exon:19696;Parent=Msa0081780-mRNA-1 |
| chr1_2 | five_prime_UTR | 60468589 | 60468785 | 60468589 | ID=Msa0081780-mRNA-1:five_prime_utr;Parent=Msa0081780-mRNA-1 |
| chr1_2 | CDS | 60467764 | 60468313 | 60467764 | ID=Msa0081780-mRNA-1:cds;Parent=Msa0081780-mRNA-1 |
| chr1_2 | CDS | 60465433 | 60465598 | 60465433 | ID=Msa0081780-mRNA-1:cds;Parent=Msa0081780-mRNA-1 |
| chr1_2 | CDS | 60465278 | 60465308 | 60465278 | ID=Msa0081780-mRNA-1:cds;Parent=Msa0081780-mRNA-1 |
| chr1_2 | three_prime_UTR | 60465058 | 60465277 | 60465058 | ID=Msa0081780-mRNA-1:three_prime_utr;Parent=Msa0081780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
