Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175360 | sp|Q9ZNV8|AHP2_ARATH | 54.286 | 140 | 63 | 1 | 3 | 141 | 7 | 146 | 2.88e-51 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175360 | G7I2T8 | 98.649 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 8.53e-104 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034480 | Msa0175360 | 0.864042 | 1.616319e-64 | -8.615850e-47 |
| Msa0079370 | Msa0175360 | 0.808577 | 2.892950e-50 | -8.615850e-47 |
| Msa0117520 | Msa0175360 | 0.804697 | 1.907089e-49 | -8.615850e-47 |
| Msa0138020 | Msa0175360 | 0.824525 | 7.701651e-54 | -8.615850e-47 |
| Msa0175360 | Msa0240270 | 0.804041 | 2.613177e-49 | -8.615850e-47 |
| Msa0175360 | Msa0363790 | 0.814301 | 1.651737e-51 | -8.615850e-47 |
| Msa0175360 | Msa0389910 | 0.801933 | 7.127043e-49 | -8.615850e-47 |
| Msa0175360 | Msa0486690 | 0.845616 | 3.633678e-59 | -8.615850e-47 |
| Msa0175360 | Msa0894710 | 0.804191 | 2.431448e-49 | -8.615850e-47 |
| Msa0175360 | Msa0992600 | 0.803095 | 4.104533e-49 | -8.615850e-47 |
| Msa0175360 | Msa1137780 | 0.808995 | 2.354721e-50 | -8.615850e-47 |
| Msa0175360 | Msa1368360 | 0.824481 | 7.887533e-54 | -8.615850e-47 |
| Msa0175360 | Msa1412130 | 0.823965 | 1.042417e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175360 | MtrunA17_Chr1g0196361 | 98.649 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 1.64e-107 | 302 |
| Msa0175360 | MtrunA17_Chr1g0191351 | 49.645 | 141 | 71 | 0 | 1 | 141 | 4 | 144 | 3.38e-52 | 162 |
| Msa0175360 | MtrunA17_Chr7g0273321 | 51.471 | 136 | 65 | 1 | 7 | 141 | 6 | 141 | 4.51e-50 | 157 |
| Msa0175360 | MtrunA17_Chr2g0286781 | 55.245 | 143 | 64 | 0 | 3 | 145 | 5 | 147 | 7.71e-50 | 156 |
| Msa0175360 | MtrunA17_Chr2g0331021 | 40.769 | 130 | 77 | 0 | 5 | 134 | 7 | 136 | 8.63e-36 | 120 |
| Msa0175360 | MtrunA17_Chr2g0331011 | 40.769 | 130 | 77 | 0 | 5 | 134 | 7 | 136 | 2.15e-35 | 120 |
| Msa0175360 | MtrunA17_Chr2g0333131 | 47.761 | 134 | 67 | 2 | 13 | 143 | 18 | 151 | 6.35e-30 | 106 |
| Msa0175360 | MtrunA17_Chr4g0003251 | 48.872 | 133 | 63 | 3 | 15 | 143 | 8 | 139 | 5.97e-25 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175360 | AT3G29350.1 | 54.286 | 140 | 63 | 1 | 3 | 141 | 7 | 146 | 2.93e-52 | 163 |
| Msa0175360 | AT1G03430.1 | 52.703 | 148 | 69 | 1 | 3 | 149 | 8 | 155 | 9.21e-52 | 162 |
| Msa0175360 | AT5G39340.1 | 52.703 | 148 | 69 | 1 | 3 | 149 | 7 | 154 | 1.69e-50 | 159 |
| Msa0175360 | AT5G39340.4 | 52.703 | 148 | 69 | 1 | 3 | 149 | 40 | 187 | 5.42e-50 | 158 |
| Msa0175360 | AT5G39340.2 | 52.703 | 148 | 69 | 1 | 3 | 149 | 56 | 203 | 1.20e-49 | 158 |
| Msa0175360 | AT5G39340.3 | 52.703 | 148 | 69 | 1 | 3 | 149 | 56 | 203 | 1.20e-49 | 158 |
| Msa0175360 | AT1G03430.2 | 54.887 | 133 | 59 | 1 | 3 | 134 | 8 | 140 | 1.75e-49 | 156 |
| Msa0175360 | AT3G21510.1 | 55.474 | 137 | 61 | 0 | 5 | 141 | 7 | 143 | 9.06e-48 | 152 |
| Msa0175360 | AT3G16360.2 | 49.587 | 121 | 61 | 0 | 14 | 134 | 11 | 131 | 4.19e-42 | 137 |
| Msa0175360 | AT3G29350.2 | 55.556 | 108 | 47 | 1 | 3 | 109 | 7 | 114 | 9.64e-41 | 132 |
| Msa0175360 | AT3G16360.1 | 49.580 | 119 | 60 | 0 | 18 | 136 | 9 | 127 | 1.51e-40 | 132 |
| Msa0175360 | AT1G80100.1 | 47.015 | 134 | 68 | 2 | 13 | 143 | 18 | 151 | 5.73e-24 | 91.3 |
| Msa0175360 | AT1G80100.3 | 43.704 | 135 | 75 | 1 | 1 | 134 | 6 | 140 | 1.31e-21 | 85.5 |
| Msa0175360 | AT4G04402.1 | 38.060 | 134 | 72 | 3 | 19 | 141 | 24 | 157 | 5.57e-20 | 81.3 |
| Msa0175360 | AT1G80100.2 | 42.857 | 133 | 53 | 3 | 13 | 143 | 18 | 129 | 1.96e-17 | 73.9 |
Find 31 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATAAGTCTCAAGTTTAT+TGG | 0.165458 | 1_4:-61295006 | None:intergenic |
| CAATCTTAAATACCTATTTA+AGG | 0.205789 | 1_4:+61294618 | Msa0175360:CDS |
| TTAAGAAAACTCACCCTTCC+AGG | 0.303814 | 1_4:-61293117 | None:intergenic |
| GATTATTCCTTCAGAATTAG+AGG | 0.326468 | 1_4:+61294905 | Msa0175360:three_prime_UTR |
| TAATAGTACATACCTTAAAT+AGG | 0.352447 | 1_4:-61294630 | None:intergenic |
| AGACATATATGTGCAAATTA+AGG | 0.357159 | 1_4:+61291905 | Msa0175360:five_prime_UTR |
| TTAGAGGATGTTTGAATGTT+GGG | 0.357279 | 1_4:+61294921 | Msa0175360:three_prime_UTR |
| ATTAGAGGATGTTTGAATGT+TGG | 0.391133 | 1_4:+61294920 | Msa0175360:three_prime_UTR |
| ATAACCTCAATCACAAAATC+AGG | 0.417121 | 1_4:-61292392 | None:intergenic |
| CGAAGCTGCTATGTTTCAAC+AGG | 0.430572 | 1_4:+61292149 | Msa0175360:CDS |
| TGCTCATGCCCATCAACAAA+AGG | 0.448350 | 1_4:+61292920 | Msa0175360:CDS |
| TATCTGGTCTGGTCTGAATT+CGG | 0.450453 | 1_4:-61291981 | None:intergenic |
| ATGTCTGCAACAATTGCAAC+AGG | 0.460807 | 1_4:+61294576 | Msa0175360:CDS |
| TTTGGTGTCTGTATCTGGTC+TGG | 0.461752 | 1_4:-61291992 | None:intergenic |
| GGATAGAACAGATGTGGATA+AGG | 0.474274 | 1_4:+61294942 | Msa0175360:three_prime_UTR |
| TCTATTTGTTTAAAATTCAC+AGG | 0.488923 | 1_4:-61292897 | None:intergenic |
| GTTGAAACATAGCAGCTTCG+TGG | 0.501753 | 1_4:-61292146 | None:intergenic |
| GACTAAAGGGAAAGAAAGTA+CGG | 0.515047 | 1_4:+61291880 | Msa0175360:five_prime_UTR |
| GCAGCTGCAACAAGAAATCA+AGG | 0.530569 | 1_4:+61294758 | Msa0175360:intron |
| TGCGAGGCTCAGAACCTGGA+AGG | 0.534171 | 1_4:+61293103 | Msa0175360:CDS |
| GCTCATGCCCATCAACAAAA+GGG | 0.561552 | 1_4:+61292921 | Msa0175360:CDS |
| CAAACATCCTCTAATTCTGA+AGG | 0.563687 | 1_4:-61294912 | None:intergenic |
| CCGTTAGATCTATTCACACA+AGG | 0.588634 | 1_4:+61294784 | Msa0175360:CDS |
| CCTTGTGTGAATAGATCTAA+CGG | 0.596362 | 1_4:-61294784 | None:intergenic |
| GCGAGGCTCAGAACCTGGAA+GGG | 0.598860 | 1_4:+61293104 | Msa0175360:CDS |
| CATATATGTGCAAATTAAGG+AGG | 0.604606 | 1_4:+61291908 | Msa0175360:five_prime_UTR |
| AACACATGGATCACTTACAT+AGG | 0.611392 | 1_4:+61292112 | Msa0175360:exon |
| AACAAAAGGGAAGCAGTGCT+AGG | 0.617678 | 1_4:+61292934 | Msa0175360:CDS |
| TTTGTTTGTTTCCGAAAACG+AGG | 0.622533 | 1_4:-61291935 | None:intergenic |
| CGTTAGATCTATTCACACAA+GGG | 0.658003 | 1_4:+61294785 | Msa0175360:CDS |
| ATGTTGGGATAGAACAGATG+TGG | 0.668847 | 1_4:+61294936 | Msa0175360:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAGTACTAAAAATT+TGG | - | chr1_4:61292013-61292032 | None:intergenic | 10.0% |
| !! | AATAAGAATACAAAAAAAAA+GGG | - | chr1_4:61292233-61292252 | None:intergenic | 10.0% |
| !! | AAATAAGAATACAAAAAAAA+AGG | - | chr1_4:61292234-61292253 | None:intergenic | 10.0% |
| !! | TATTATTCTCTTTAATTAAT+TGG | + | chr1_4:61292483-61292502 | Msa0175360:intron | 10.0% |
| !! | TATTTGAAAAAAAAAATAAC+AGG | - | chr1_4:61293793-61293812 | None:intergenic | 10.0% |
| !!! | AATTTGATATTATTGGTTAT+TGG | + | chr1_4:61292307-61292326 | Msa0175360:intron | 15.0% |
| !!! | ATTTGATATTATTGGTTATT+GGG | + | chr1_4:61292308-61292327 | Msa0175360:intron | 15.0% |
| !! | AACATCTTAATCAATTAAAA+AGG | + | chr1_4:61292618-61292637 | Msa0175360:intron | 15.0% |
| !! | AAAAAAAAATAACAGGAATT+AGG | - | chr1_4:61293786-61293805 | None:intergenic | 15.0% |
| !! | AATACAAGCAATATAATATA+CGG | - | chr1_4:61294730-61294749 | None:intergenic | 15.0% |
| !!! | TTTTTGACTTGAAATTGAAA+AGG | - | chr1_4:61292038-61292057 | None:intergenic | 20.0% |
| !!! | TTTGATATTATTGGTTATTG+GGG | + | chr1_4:61292309-61292328 | Msa0175360:intron | 20.0% |
| !! | TAATAGTAATAGTACTTACA+GGG | - | chr1_4:61292468-61292487 | None:intergenic | 20.0% |
| !! | ATAATAGTAATAGTACTTAC+AGG | - | chr1_4:61292469-61292488 | None:intergenic | 20.0% |
| !! | AATTATTGAATAATATGTGC+CGG | + | chr1_4:61292689-61292708 | Msa0175360:intron | 20.0% |
| !!! | TCTATTTGTTTAAAATTCAC+AGG | - | chr1_4:61292900-61292919 | None:intergenic | 20.0% |
| !! | TAAATAAAATCTACTTCCAT+AGG | - | chr1_4:61293010-61293029 | None:intergenic | 20.0% |
| !!! | ATTTATTTGTTAAACAGTGT+TGG | + | chr1_4:61293037-61293056 | Msa0175360:intron | 20.0% |
| !! | ATACAAACAAAAACAATTTG+GGG | - | chr1_4:61293635-61293654 | None:intergenic | 20.0% |
| !! | CATACAAACAAAAACAATTT+GGG | - | chr1_4:61293636-61293655 | None:intergenic | 20.0% |
| !! | TCATACAAACAAAAACAATT+TGG | - | chr1_4:61293637-61293656 | None:intergenic | 20.0% |
| !! | CACATCAATTTATATGTATT+AGG | - | chr1_4:61293696-61293715 | None:intergenic | 20.0% |
| !!! | TCTGATTTGTATTATATGAA+AGG | + | chr1_4:61294100-61294119 | Msa0175360:intron | 20.0% |
| !!! | TGAAAGTCTAAAATTTAAGA+TGG | + | chr1_4:61294330-61294349 | Msa0175360:intron | 20.0% |
| !!! | TCTATTTTATACCTGTTATT+CGG | + | chr1_4:61294361-61294380 | Msa0175360:intron | 20.0% |
| !!! | CAAAAAAAAATGTTATTTGC+AGG | + | chr1_4:61294545-61294564 | Msa0175360:intron | 20.0% |
| !! | CAATCTTAAATACCTATTTA+AGG | + | chr1_4:61294618-61294637 | Msa0175360:CDS | 20.0% |
| !! | TAATAGTACATACCTTAAAT+AGG | - | chr1_4:61294633-61294652 | None:intergenic | 20.0% |
| !!! | GTACTATTACGTTTAATTTT+CGG | + | chr1_4:61294644-61294663 | Msa0175360:intron | 20.0% |
| ! | GGCTAATTACTCAATAAAAA+AGG | + | chr1_4:61291822-61291841 | Msa0175360:five_prime_UTR | 25.0% |
| ! | AGACATATATGTGCAAATTA+AGG | + | chr1_4:61291905-61291924 | Msa0175360:five_prime_UTR | 25.0% |
| ! | TCGAATCAAAAAATAACACA+TGG | + | chr1_4:61292098-61292117 | Msa0175360:exon | 25.0% |
| ! | ACATGTAACGAAAAGATTAT+AGG | - | chr1_4:61292177-61292196 | None:intergenic | 25.0% |
| !! | TTGATATTATTGGTTATTGG+GGG | + | chr1_4:61292310-61292329 | Msa0175360:intron | 25.0% |
| ! | ATTATTGAATAATATGTGCC+GGG | + | chr1_4:61292690-61292709 | Msa0175360:intron | 25.0% |
| !! | TTTTCTTTGAATTAGATCCT+CGG | - | chr1_4:61293363-61293382 | None:intergenic | 25.0% |
| ! | AAAAAATAACAGGAATTAGG+AGG | - | chr1_4:61293783-61293802 | None:intergenic | 25.0% |
| ! | AAAGTTTGTGCAAAACTTTA+CGG | + | chr1_4:61293876-61293895 | Msa0175360:intron | 25.0% |
| !! | TTTCATTTGGTTTATAGGTA+GGG | - | chr1_4:61293977-61293996 | None:intergenic | 25.0% |
| !! | ATTTCATTTGGTTTATAGGT+AGG | - | chr1_4:61293978-61293997 | None:intergenic | 25.0% |
| !! | AGACATTTCATTTGGTTTAT+AGG | - | chr1_4:61293982-61294001 | None:intergenic | 25.0% |
| ! | GTTTATTGAGAAAGTAGTAT+TGG | + | chr1_4:61294016-61294035 | Msa0175360:intron | 25.0% |
| ! | ACTAAACAAATAGAATCTAC+AGG | + | chr1_4:61294155-61294174 | Msa0175360:intron | 25.0% |
| !! | AGATAGCAACGAAATTATTT+TGG | + | chr1_4:61294244-61294263 | Msa0175360:intron | 25.0% |
| ! | CTCAAAACTTATCAAAACAA+TGG | + | chr1_4:61294482-61294501 | Msa0175360:intron | 25.0% |
| ! | ATGAATACTCCAACATTTAT+AGG | - | chr1_4:61294522-61294541 | None:intergenic | 25.0% |
| !! | TTTTCTTGATTTCTAACTGT+TGG | - | chr1_4:61294831-61294850 | None:intergenic | 25.0% |
| ! | GAAATAAGTCTCAAGTTTAT+TGG | - | chr1_4:61295009-61295028 | None:intergenic | 25.0% |
| !!! | AGAGAGATTGTTTTGACTAA+AGG | + | chr1_4:61291866-61291885 | Msa0175360:five_prime_UTR | 30.0% |
| !!! | GAGAGATTGTTTTGACTAAA+GGG | + | chr1_4:61291867-61291886 | Msa0175360:five_prime_UTR | 30.0% |
| CATATATGTGCAAATTAAGG+AGG | + | chr1_4:61291908-61291927 | Msa0175360:five_prime_UTR | 30.0% | |
| !! | AAAAATTTGGTGTCTGTATC+TGG | - | chr1_4:61292000-61292019 | None:intergenic | 30.0% |
| CTCAATTCAACAGAAAAACA+GGG | - | chr1_4:61292070-61292089 | None:intergenic | 30.0% | |
| TCTCAATTCAACAGAAAAAC+AGG | - | chr1_4:61292071-61292090 | None:intergenic | 30.0% | |
| ATAACCTCAATCACAAAATC+AGG | - | chr1_4:61292395-61292414 | None:intergenic | 30.0% | |
| GTTATACCAAAAACTTTCGT+AGG | + | chr1_4:61292802-61292821 | Msa0175360:intron | 30.0% | |
| !!! | CTTTTAGTTTGTTTGATGCA+TGG | + | chr1_4:61292828-61292847 | Msa0175360:intron | 30.0% |
| GATGCATGGAAATATTAAAC+TGG | + | chr1_4:61292842-61292861 | Msa0175360:intron | 30.0% | |
| GCTAGAGTTAAAAATGTTTG+TGG | + | chr1_4:61293064-61293083 | Msa0175360:CDS | 30.0% | |
| CTTAAATTCTTTCATGTTCC+CGG | + | chr1_4:61293135-61293154 | Msa0175360:intron | 30.0% | |
| TTTAAGCAGCTAAATGTTTC+CGG | - | chr1_4:61293157-61293176 | None:intergenic | 30.0% | |
| GTAAGGGTTAAATGCTAAAT+AGG | - | chr1_4:61293506-61293525 | None:intergenic | 30.0% | |
| CAAGTCAGAATTATAGGTAA+GGG | - | chr1_4:61293522-61293541 | None:intergenic | 30.0% | |
| ACGAATTAAGCTAAAATCAG+TGG | - | chr1_4:61293570-61293589 | None:intergenic | 30.0% | |
| !!! | ACTGATTTTAGCTTAATTCG+TGG | + | chr1_4:61293569-61293588 | Msa0175360:intron | 30.0% |
| TCAAAAGTAGAGAATTGTGT+AGG | - | chr1_4:61293847-61293866 | None:intergenic | 30.0% | |
| AAGTTTGTGCAAAACTTTAC+GGG | + | chr1_4:61293877-61293896 | Msa0175360:intron | 30.0% | |
| GACTTAGAAGACATTTCATT+TGG | - | chr1_4:61293990-61294009 | None:intergenic | 30.0% | |
| TACTACTTTCTCAATAAACG+TGG | - | chr1_4:61294015-61294034 | None:intergenic | 30.0% | |
| GATTATTGTGGACATTTCAT+TGG | - | chr1_4:61294411-61294430 | None:intergenic | 30.0% | |
| TGTCCACAATAATCCTTAAA+AGG | + | chr1_4:61294417-61294436 | Msa0175360:intron | 30.0% | |
| ! | TCAAGCTATTTCGTTAAAGA+CGG | + | chr1_4:61294669-61294688 | Msa0175360:intron | 30.0% |
| AATAGATGATGTCTATTAGG+AGG | - | chr1_4:61294707-61294726 | None:intergenic | 30.0% | |
| GATTATTCCTTCAGAATTAG+AGG | + | chr1_4:61294905-61294924 | Msa0175360:three_prime_UTR | 30.0% | |
| ATTAGAGGATGTTTGAATGT+TGG | + | chr1_4:61294920-61294939 | Msa0175360:three_prime_UTR | 30.0% | |
| TTAGAGGATGTTTGAATGTT+GGG | + | chr1_4:61294921-61294940 | Msa0175360:three_prime_UTR | 30.0% | |
| GACTAAAGGGAAAGAAAGTA+CGG | + | chr1_4:61291880-61291899 | Msa0175360:five_prime_UTR | 35.0% | |
| TTTGTTTGTTTCCGAAAACG+AGG | - | chr1_4:61291938-61291957 | None:intergenic | 35.0% | |
| AACACATGGATCACTTACAT+AGG | + | chr1_4:61292112-61292131 | Msa0175360:exon | 35.0% | |
| ! | TAGTCCTGATTTTGTGATTG+AGG | + | chr1_4:61292388-61292407 | Msa0175360:CDS | 35.0% |
| GTTAGTGTCAATATCGTATC+TGG | - | chr1_4:61292557-61292576 | None:intergenic | 35.0% | |
| TACATAGCACAAAAGTTGGA+GGG | + | chr1_4:61292727-61292746 | Msa0175360:intron | 35.0% | |
| !!! | GAAAGTTTTTGGTATAACCC+AGG | - | chr1_4:61292800-61292819 | None:intergenic | 35.0% |
| ! | AAGTCACCTACGAAAGTTTT+TGG | - | chr1_4:61292811-61292830 | None:intergenic | 35.0% |
| TGTATTAGTGCACTAACCTA+TGG | + | chr1_4:61292991-61293010 | Msa0175360:intron | 35.0% | |
| TTAAGCAGCTAAATGTTTCC+GGG | - | chr1_4:61293156-61293175 | None:intergenic | 35.0% | |
| GGATTACAAAAGATACTACC+GGG | - | chr1_4:61293431-61293450 | None:intergenic | 35.0% | |
| GGGATTACAAAAGATACTAC+CGG | - | chr1_4:61293432-61293451 | None:intergenic | 35.0% | |
| !!! | GCTGAGAATAAGTTTTAGAG+GGG | - | chr1_4:61293452-61293471 | None:intergenic | 35.0% |
| !!! | CGCTGAGAATAAGTTTTAGA+GGG | - | chr1_4:61293453-61293472 | None:intergenic | 35.0% |
| !! | ACGCTGAGAATAAGTTTTAG+AGG | - | chr1_4:61293454-61293473 | None:intergenic | 35.0% |
| AACTTATTCTCAGCGTTCTT+TGG | + | chr1_4:61293458-61293477 | Msa0175360:intron | 35.0% | |
| CCAAGTCAGAATTATAGGTA+AGG | - | chr1_4:61293523-61293542 | None:intergenic | 35.0% | |
| CCTTACCTATAATTCTGACT+TGG | + | chr1_4:61293520-61293539 | Msa0175360:intron | 35.0% | |
| !!! | CCTTTTTTTACACTCAGAAG+GGG | - | chr1_4:61293735-61293754 | None:intergenic | 35.0% |
| !!! | CCCTTTTTTTACACTCAGAA+GGG | - | chr1_4:61293736-61293755 | None:intergenic | 35.0% |
| CCCTTCTGAGTGTAAAAAAA+GGG | + | chr1_4:61293733-61293752 | Msa0175360:intron | 35.0% | |
| ! | GCAAAAAAGTGTACACAGTT+TGG | + | chr1_4:61293755-61293774 | Msa0175360:intron | 35.0% |
| TATAGGTAGGGAAACATAGA+AGG | - | chr1_4:61293965-61293984 | None:intergenic | 35.0% | |
| AAATGAGCAAACAGAAAACG+TGG | + | chr1_4:61294196-61294215 | Msa0175360:intron | 35.0% | |
| AATGAGCAAACAGAAAACGT+GGG | + | chr1_4:61294197-61294216 | Msa0175360:intron | 35.0% | |
| CAAGCTTAGACAAATACAAG+TGG | - | chr1_4:61294387-61294406 | None:intergenic | 35.0% | |
| !! | ACGCCTTTTAAGGATTATTG+TGG | - | chr1_4:61294423-61294442 | None:intergenic | 35.0% |
| ! | TCCTTAAAAGGCGTATTCAA+TGG | + | chr1_4:61294429-61294448 | Msa0175360:intron | 35.0% |
| ! | ACCATTGAATACGCCTTTTA+AGG | - | chr1_4:61294433-61294452 | None:intergenic | 35.0% |
| ACATCACTGCCTATAAATGT+TGG | + | chr1_4:61294510-61294529 | Msa0175360:intron | 35.0% | |
| CGGAATAGATGATGTCTATT+AGG | - | chr1_4:61294710-61294729 | None:intergenic | 35.0% | |
| CCTTGTGTGAATAGATCTAA+CGG | - | chr1_4:61294787-61294806 | None:intergenic | 35.0% | |
| CGTTAGATCTATTCACACAA+GGG | + | chr1_4:61294785-61294804 | Msa0175360:CDS | 35.0% | |
| !!! | TTGCTTGTTTTGGTTTTTGC+TGG | + | chr1_4:61294883-61294902 | Msa0175360:three_prime_UTR | 35.0% |
| CAAACATCCTCTAATTCTGA+AGG | - | chr1_4:61294915-61294934 | None:intergenic | 35.0% | |
| ! | AAGGAGGAAATCCTCGTTTT+CGG | + | chr1_4:61291924-61291943 | Msa0175360:five_prime_UTR | 40.0% |
| TATCTGGTCTGGTCTGAATT+CGG | - | chr1_4:61291984-61292003 | None:intergenic | 40.0% | |
| CAACAGAAAAACAGGGTTGA+AGG | - | chr1_4:61292063-61292082 | None:intergenic | 40.0% | |
| GTGCTACATAGCACAAAAGT+TGG | + | chr1_4:61292723-61292742 | Msa0175360:intron | 40.0% | |
| CTACATAGCACAAAAGTTGG+AGG | + | chr1_4:61292726-61292745 | Msa0175360:intron | 40.0% | |
| ACCCTAGGATACGACAATTT+GGG | - | chr1_4:61292771-61292790 | None:intergenic | 40.0% | |
| TACCCTAGGATACGACAATT+TGG | - | chr1_4:61292772-61292791 | None:intergenic | 40.0% | |
| ! | ACTGCTTCCCTTTTGTTGAT+GGG | - | chr1_4:61292931-61292950 | None:intergenic | 40.0% |
| ! | CACGTTCAGAAATTTTTGCG+AGG | + | chr1_4:61293087-61293106 | Msa0175360:CDS | 40.0% |
| TTAAGAAAACTCACCCTTCC+AGG | - | chr1_4:61293120-61293139 | None:intergenic | 40.0% | |
| CATATGTCCCCATGTATGTT+TGG | + | chr1_4:61293283-61293302 | Msa0175360:intron | 40.0% | |
| TTCGACACCAAACATACATG+GGG | - | chr1_4:61293293-61293312 | None:intergenic | 40.0% | |
| CTTCGACACCAAACATACAT+GGG | - | chr1_4:61293294-61293313 | None:intergenic | 40.0% | |
| ACTTCGACACCAAACATACA+TGG | - | chr1_4:61293295-61293314 | None:intergenic | 40.0% | |
| ! | AAAGCTTTAGCAATCTACCG+AGG | + | chr1_4:61293343-61293362 | Msa0175360:intron | 40.0% |
| AACTACATCTTGAATCTGCC+CGG | + | chr1_4:61293410-61293429 | Msa0175360:intron | 40.0% | |
| GGAGTCCAAGTCAGAATTAT+AGG | - | chr1_4:61293528-61293547 | None:intergenic | 40.0% | |
| CTCCTTCACAACTTATCTTG+AGG | + | chr1_4:61293544-61293563 | Msa0175360:intron | 40.0% | |
| CCCCTTCTGAGTGTAAAAAA+AGG | + | chr1_4:61293732-61293751 | Msa0175360:intron | 40.0% | |
| !!! | GCCCTTTTTTTACACTCAGA+AGG | - | chr1_4:61293737-61293756 | None:intergenic | 40.0% |
| GCTCATTTATCACTGTGTTG+TGG | - | chr1_4:61294184-61294203 | None:intergenic | 40.0% | |
| ! | CAATAAGTTGAGAGAGACGA+CGG | + | chr1_4:61294220-61294239 | Msa0175360:intron | 40.0% |
| AGACTTTAATCCTCACCTCT+TGG | + | chr1_4:61294282-61294301 | Msa0175360:intron | 40.0% | |
| AAAAGTTAGTCCAAGAGGTG+AGG | - | chr1_4:61294295-61294314 | None:intergenic | 40.0% | |
| ! | ACCTCTTGGACTAACTTTTG+AGG | + | chr1_4:61294296-61294315 | Msa0175360:intron | 40.0% |
| ACCTCAAAAGTTAGTCCAAG+AGG | - | chr1_4:61294300-61294319 | None:intergenic | 40.0% | |
| AATACAAGTGGCCGAATAAC+AGG | - | chr1_4:61294375-61294394 | None:intergenic | 40.0% | |
| ATGTCTGCAACAATTGCAAC+AGG | + | chr1_4:61294576-61294595 | Msa0175360:CDS | 40.0% | |
| CCGTTAGATCTATTCACACA+AGG | + | chr1_4:61294784-61294803 | Msa0175360:CDS | 40.0% | |
| !! | GCAGCTGATTTTGCTTGTTT+TGG | + | chr1_4:61294873-61294892 | Msa0175360:three_prime_UTR | 40.0% |
| ATGTTGGGATAGAACAGATG+TGG | + | chr1_4:61294936-61294955 | Msa0175360:three_prime_UTR | 40.0% | |
| GGATAGAACAGATGTGGATA+AGG | + | chr1_4:61294942-61294961 | Msa0175360:three_prime_UTR | 40.0% | |
| !! | TTTGGTGTCTGTATCTGGTC+TGG | - | chr1_4:61291995-61292014 | None:intergenic | 45.0% |
| GTTGAAACATAGCAGCTTCG+TGG | - | chr1_4:61292149-61292168 | None:intergenic | 45.0% | |
| CGAAGCTGCTATGTTTCAAC+AGG | + | chr1_4:61292149-61292168 | Msa0175360:CDS | 45.0% | |
| ! | TTATTGGTTATTGGGGGAGC+AGG | + | chr1_4:61292316-61292335 | Msa0175360:intron | 45.0% |
| ! | TATTGGTTATTGGGGGAGCA+GGG | + | chr1_4:61292317-61292336 | Msa0175360:intron | 45.0% |
| CTAGGATACGACAATTTGGG+CGG | - | chr1_4:61292768-61292787 | None:intergenic | 45.0% | |
| GCCCAAATTGTCGTATCCTA+GGG | + | chr1_4:61292767-61292786 | Msa0175360:intron | 45.0% | |
| TATCCTAGGGTACGATACCT+GGG | + | chr1_4:61292780-61292799 | Msa0175360:intron | 45.0% | |
| TGCTCATGCCCATCAACAAA+AGG | + | chr1_4:61292920-61292939 | Msa0175360:CDS | 45.0% | |
| GCTCATGCCCATCAACAAAA+GGG | + | chr1_4:61292921-61292940 | Msa0175360:CDS | 45.0% | |
| ! | CACTGCTTCCCTTTTGTTGA+TGG | - | chr1_4:61292932-61292951 | None:intergenic | 45.0% |
| AACAAAAGGGAAGCAGTGCT+AGG | + | chr1_4:61292934-61292953 | Msa0175360:CDS | 45.0% | |
| GGCCTCAAGATAAGTTGTGA+AGG | - | chr1_4:61293549-61293568 | None:intergenic | 45.0% | |
| TGTATGCTTCGTGCAGTCAT+TGG | - | chr1_4:61294126-61294145 | None:intergenic | 45.0% | |
| GCAGCTGCAACAAGAAATCA+AGG | + | chr1_4:61294758-61294777 | Msa0175360:intron | 45.0% | |
| !! | TTTAATAAATTTGATATTAT+TGG | + | chr1_4:61292300-61292319 | Msa0175360:intron | 5.0% |
| CGCCCAAATTGTCGTATCCT+AGG | + | chr1_4:61292766-61292785 | Msa0175360:intron | 50.0% | |
| GTATCCTAGGGTACGATACC+TGG | + | chr1_4:61292779-61292798 | Msa0175360:intron | 50.0% | |
| ! | TAACCCAGGTATCGTACCCT+AGG | - | chr1_4:61292786-61292805 | None:intergenic | 50.0% |
| ! | TTTTTGCGAGGCTCAGAACC+TGG | + | chr1_4:61293099-61293118 | Msa0175360:CDS | 50.0% |
| ATTGGGGGAGCAGGGTTATC+TGG | + | chr1_4:61292325-61292344 | Msa0175360:intron | 55.0% | |
| TGTAGCACGTGTGCGACACC+CGG | - | chr1_4:61292711-61292730 | None:intergenic | 60.0% | |
| TGCGAGGCTCAGAACCTGGA+AGG | + | chr1_4:61293103-61293122 | Msa0175360:CDS | 60.0% | |
| GCGAGGCTCAGAACCTGGAA+GGG | + | chr1_4:61293104-61293123 | Msa0175360:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 61291814 | 61295122 | 61291814 | ID=Msa0175360;Name=Msa0175360 |
| chr1_4 | mRNA | 61291814 | 61295122 | 61291814 | ID=Msa0175360-mRNA-1;Parent=Msa0175360;Name=Msa0175360-mRNA-1;_AED=0.01;_eAED=0.01;_QI=303|1|1|1|1|1|6|310|149 |
| chr1_4 | exon | 61291814 | 61292170 | 61291814 | ID=Msa0175360-mRNA-1:exon:19582;Parent=Msa0175360-mRNA-1 |
| chr1_4 | exon | 61292338 | 61292468 | 61292338 | ID=Msa0175360-mRNA-1:exon:19583;Parent=Msa0175360-mRNA-1 |
| chr1_4 | exon | 61292887 | 61292955 | 61292887 | ID=Msa0175360-mRNA-1:exon:19584;Parent=Msa0175360-mRNA-1 |
| chr1_4 | exon | 61293054 | 61293125 | 61293054 | ID=Msa0175360-mRNA-1:exon:19585;Parent=Msa0175360-mRNA-1 |
| chr1_4 | exon | 61294567 | 61294639 | 61294567 | ID=Msa0175360-mRNA-1:exon:19586;Parent=Msa0175360-mRNA-1 |
| chr1_4 | exon | 61294762 | 61295122 | 61294762 | ID=Msa0175360-mRNA-1:exon:19587;Parent=Msa0175360-mRNA-1 |
| chr1_4 | five_prime_UTR | 61291814 | 61292116 | 61291814 | ID=Msa0175360-mRNA-1:five_prime_utr;Parent=Msa0175360-mRNA-1 |
| chr1_4 | CDS | 61292117 | 61292170 | 61292117 | ID=Msa0175360-mRNA-1:cds;Parent=Msa0175360-mRNA-1 |
| chr1_4 | CDS | 61292338 | 61292468 | 61292338 | ID=Msa0175360-mRNA-1:cds;Parent=Msa0175360-mRNA-1 |
| chr1_4 | CDS | 61292887 | 61292955 | 61292887 | ID=Msa0175360-mRNA-1:cds;Parent=Msa0175360-mRNA-1 |
| chr1_4 | CDS | 61293054 | 61293125 | 61293054 | ID=Msa0175360-mRNA-1:cds;Parent=Msa0175360-mRNA-1 |
| chr1_4 | CDS | 61294567 | 61294639 | 61294567 | ID=Msa0175360-mRNA-1:cds;Parent=Msa0175360-mRNA-1 |
| chr1_4 | CDS | 61294762 | 61294812 | 61294762 | ID=Msa0175360-mRNA-1:cds;Parent=Msa0175360-mRNA-1 |
| chr1_4 | three_prime_UTR | 61294813 | 61295122 | 61294813 | ID=Msa0175360-mRNA-1:three_prime_utr;Parent=Msa0175360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
