AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0363790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363790 MtrunA17_Chr3g0102681 97.393 652 17 0 1 652 1 652 0.0 1247
Msa0363790 MtrunA17_Chr3g0078801 58.982 668 249 8 1 652 1 659 0.0 618
Msa0363790 MtrunA17_Chr5g0446731 58.383 668 253 8 1 652 1 659 0.0 617
Msa0363790 MtrunA17_Chr2g0290651 43.363 565 308 7 11 570 8 565 8.48e-111 345
Msa0363790 MtrunA17_Chr4g0076431 45.115 563 272 11 14 566 6 541 2.20e-97 310
Msa0363790 MtrunA17_Chr3g0133891 30.033 606 387 10 4 580 269 866 1.23e-43 168
Msa0363790 MtrunA17_Chr1g0153431 27.603 634 389 15 11 594 257 870 8.23e-37 147
Msa0363790 MtrunA17_Chr4g0075951 43.131 313 160 6 261 566 4 305 1.25e-34 134
Msa0363790 MtrunA17_Chr7g0251231 28.923 650 385 19 31 637 12 627 8.43e-27 115
Msa0363790 MtrunA17_Chr8g0369191 30.796 565 332 14 24 571 27 549 9.02e-26 112
Msa0363790 MtrunA17_Chr7g0244501 27.473 273 193 2 299 571 166 433 3.15e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363790 AT5G55860.1 55.371 661 274 11 1 652 1 649 0.0 574
Msa0363790 AT1G12150.2 40.754 557 308 4 12 568 9 543 6.47e-108 337
Msa0363790 AT1G12150.1 40.754 557 308 4 12 568 9 543 6.47e-108 337
Msa0363790 AT4G17210.1 33.100 571 327 10 2 565 1 523 1.74e-63 219
Msa0363790 AT2G26570.1 29.711 589 382 9 9 573 151 731 2.20e-40 158
Msa0363790 AT2G26570.2 29.711 589 382 9 9 573 151 731 2.20e-40 158
Msa0363790 AT4G33390.1 28.670 579 368 10 24 571 156 720 3.24e-31 130
Msa0363790 AT5G42880.1 27.461 579 373 12 11 571 117 666 3.18e-25 111
Msa0363790 AT1G66840.2 27.725 523 322 10 32 531 11 500 2.55e-23 105
Msa0363790 AT1G66840.1 27.725 523 322 10 32 531 11 500 2.55e-23 105
Msa0363790 AT1G45545.2 25.926 594 376 14 3 576 135 684 6.11e-21 98.2
Msa0363790 AT1G45545.1 25.926 594 376 14 3 576 134 683 7.86e-21 97.8
Msa0363790 AT3G13190.4 33.108 296 105 7 300 592 93 298 1.13e-19 90.9
Msa0363790 AT3G13190.4 43.678 87 44 1 28 114 2 83 8.48e-11 64.3
Msa0363790 AT3G13190.2 33.108 296 105 7 300 592 93 298 1.13e-19 90.9
Msa0363790 AT3G13190.2 43.678 87 44 1 28 114 2 83 8.48e-11 64.3
Msa0363790 AT3G13190.1 33.108 296 105 7 300 592 93 298 1.13e-19 90.9
Msa0363790 AT3G13190.1 43.678 87 44 1 28 114 2 83 8.48e-11 64.3
Msa0363790 AT3G13190.3 33.108 296 105 7 300 592 93 298 1.13e-19 90.9
Msa0363790 AT3G13190.3 43.678 87 44 1 28 114 2 83 8.48e-11 64.3

Find 128 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGTTTGGTGACAAATTA+TGG 0.127940 3_1:+56437582 Msa0363790:three_prime_UTR
GAAATTACTTGCTTTGAAAA+AGG 0.226698 3_1:+56436275 Msa0363790:CDS
AATCATCTCCTCAGCATTAT+AGG 0.237681 3_1:+56437264 Msa0363790:CDS
AAAAGAGCTAAACAAGTTAA+AGG 0.270733 3_1:+56435723 Msa0363790:CDS
GTGATTCTTCAAGACTCTTC+AGG 0.294618 3_1:-56432705 None:intergenic
GATAGAGATGTGTTTGAAAA+TGG 0.297959 3_1:-56432584 None:intergenic
GGACATGCATTATATGTAAA+TGG 0.299725 3_1:+56437604 Msa0363790:three_prime_UTR
AAAGCTGCTGTGTCTCTATT+TGG 0.302297 3_1:+56433909 Msa0363790:CDS
ACCTCAGCAGAATAAGCTTT+TGG 0.303574 3_1:-56433972 None:intergenic
TTTCATGTCAGCTAATTTAT+CGG 0.305879 3_1:-56436991 None:intergenic
TCTTCAGGTTTGAAAATAAC+TGG 0.319054 3_1:-56432690 None:intergenic
CCGCCGTGCTTCCTCAGTTT+CGG 0.320227 3_1:-56436700 None:intergenic
TCGAAGAAAATTAATATTAG+TGG 0.333342 3_1:+56437362 Msa0363790:CDS
AACACAGGAGGCCTTGAAAA+AGG 0.341599 3_1:+56437118 Msa0363790:CDS
TCAAATCATCGACTGTCCTT+TGG 0.346505 3_1:-56435804 None:intergenic
AGCTTTCATGACTGGTAGAT+TGG 0.347786 3_1:+56437691 Msa0363790:three_prime_UTR
TAAAACTTATTACTGAATCT+AGG 0.353268 3_1:+56435836 Msa0363790:CDS
CGCAATTTCATTCATTGTCC+CGG 0.353986 3_1:-56436340 None:intergenic
ATTGTATGGTGTTAATAGTT+TGG 0.355345 3_1:+56437569 Msa0363790:three_prime_UTR
TATCTTAGATCTAAATCTTA+AGG 0.355565 3_1:-56433785 None:intergenic
GAGAGCCAGTAGCAGTTTGC+CGG 0.372052 3_1:-56433824 None:intergenic
CTTAGATTCTTCAGCCGAAC+AGG 0.377156 3_1:-56436628 None:intergenic
ATAGTTTGGTGACAAATTAT+GGG 0.378834 3_1:+56437583 Msa0363790:three_prime_UTR
CAAATCATCGACTGTCCTTT+GGG 0.385506 3_1:-56435803 None:intergenic
TTCTGATGACATCTGTGTTT+CGG 0.386782 3_1:-56437243 None:intergenic
CTGATGGAGCAAACGGTGCC+TGG 0.387841 3_1:+56435920 Msa0363790:CDS
GGATCTGCTTCTTATTTGCC+TGG 0.393498 3_1:+56437422 Msa0363790:CDS
GCTGAAGAATCTAAGGTTAG+AGG 0.403747 3_1:+56436636 Msa0363790:CDS
CTCTGTGAAAACTGTTACTT+CGG 0.404144 3_1:+56436407 Msa0363790:CDS
CTGTTCGGCTGAAGAATCTA+AGG 0.404534 3_1:+56436629 Msa0363790:CDS
TGCTTCTTCCAATGCAAGCT+TGG 0.405983 3_1:-56436778 None:intergenic
GAAAGAACATTCTGAGTTGA+AGG 0.406873 3_1:+56436530 Msa0363790:CDS
AGCTGACACTCTTGCATTCG+AGG 0.408737 3_1:-56436046 None:intergenic
CCCAACTGTGGATTCCAATT+CGG 0.409056 3_1:-56436562 None:intergenic
GTCTGAGCTCGAAGCCTGTT+CGG 0.418955 3_1:+56436614 Msa0363790:CDS
ACTGTTACTTCGGAGCTTGA+TGG 0.425760 3_1:+56436417 Msa0363790:CDS
CTTGAAGAATCACCTTTGTA+AGG 0.429610 3_1:+56432715 Msa0363790:five_prime_UTR
TGCGGCTCTGCATACAGAAA+TGG 0.431425 3_1:+56436359 Msa0363790:CDS
AAAATCCGGCAAACTGCTAC+TGG 0.432590 3_1:+56433819 Msa0363790:CDS
CTTTCACATGGTCTCGTGAA+AGG 0.443915 3_1:-56437716 None:intergenic
AAAAGAAATTTCAGCTGTAA+AGG 0.450558 3_1:+56436134 Msa0363790:CDS
AAGCTCTTGTGGAGCTTGAA+AGG 0.450937 3_1:+56435779 Msa0363790:CDS
GTGTCAATCTCTCCAACCTC+TGG 0.455117 3_1:-56433864 None:intergenic
GCAAACAAAGCTAGCATATG+TGG 0.459076 3_1:+56436167 Msa0363790:CDS
AGAGATGAGAGTGAGTAATC+AGG 0.463077 3_1:-56432509 None:intergenic
AGGGTGAGCTTCGAAGGTGG+CGG 0.468730 3_1:+56437174 Msa0363790:CDS
AGCAGCAAAGAAAGCGGTTG+AGG 0.474306 3_1:+56437154 Msa0363790:CDS
TCCAATGTTGTACGAGGAGG+TGG 0.492938 3_1:-56437305 None:intergenic
AAACAAAAGATCGTCTGACT+TGG 0.493337 3_1:+56436383 Msa0363790:CDS
TACATGAAGTTGCGTCTCCT+TGG 0.494303 3_1:-56435695 None:intergenic
AGCTCTTGTGGAGCTTGAAA+GGG 0.495752 3_1:+56435780 Msa0363790:CDS
AGATATGAAAACTGCAACAC+AGG 0.498887 3_1:+56437103 Msa0363790:CDS
CGAAACTGAGGAAGCACGGC+GGG 0.499299 3_1:+56436701 Msa0363790:CDS
GTCTTGAAGCACAGTTGGCC+GGG 0.499445 3_1:+56436322 Msa0363790:CDS
TGATATTAAGCTTTCATGAC+TGG 0.499587 3_1:+56437683 Msa0363790:three_prime_UTR
AGAAGCTGAAAATGCAATGA+AGG 0.500269 3_1:+56436083 Msa0363790:CDS
AGTCTTGAAGCACAGTTGGC+CGG 0.501388 3_1:+56436321 Msa0363790:CDS
TTTCACATGGTCTCGTGAAA+GGG 0.501523 3_1:-56437715 None:intergenic
AAAACTTATTACTGAATCTA+GGG 0.504876 3_1:+56435837 Msa0363790:CDS
AGCTTCACAACAAACTATAC+AGG 0.508704 3_1:-56437452 None:intergenic
AAAAGCAATATTGTTGAGGA+TGG 0.511312 3_1:+56437401 Msa0363790:CDS
AGAAAACACTCTTAGAAGCT+TGG 0.512858 3_1:+56436473 Msa0363790:CDS
GCATCTACATCGTCAGAATC+CGG 0.512989 3_1:+56436909 Msa0363790:CDS
CGGTTGAGGGTGAGCTTCGA+AGG 0.513525 3_1:+56437168 Msa0363790:CDS
TAAATTAGCTGACATGAAAG+TGG 0.513758 3_1:+56436995 Msa0363790:CDS
GTGTTTGAAAATGGAAAAGC+TGG 0.518968 3_1:-56432575 None:intergenic
GGGTGAGCTTCGAAGGTGGC+GGG 0.519859 3_1:+56437175 Msa0363790:CDS
TACTAAGGCTCAAGCTCTTG+TGG 0.520283 3_1:+56435768 Msa0363790:CDS
TCCGAATTGGAATCCACAGT+TGG 0.526090 3_1:+56436561 Msa0363790:CDS
AAAGAACGCTGAAACTACTA+AGG 0.527676 3_1:+56435753 Msa0363790:CDS
CTCTATCTCTCCCTTTCACA+TGG 0.533831 3_1:-56437728 None:intergenic
CAAAAGTACGGTGACTCTGA+TGG 0.536667 3_1:+56435904 Msa0363790:CDS
AACAGACTGAAAAGGTGGGC+TGG 0.541022 3_1:-56433886 None:intergenic
CCGAATTGGAATCCACAGTT+GGG 0.544037 3_1:+56436562 Msa0363790:CDS
AGATCTGAGGAAAACCCGTC+AGG 0.549936 3_1:+56436011 Msa0363790:CDS
CCCAGTCTAAAACCAGAGGT+TGG 0.551359 3_1:+56433852 Msa0363790:CDS
TGAAGCTACCAAGCTTGCAT+TGG 0.554079 3_1:+56436770 Msa0363790:CDS
CGATATTGTCATTGCAGCAC+CGG 0.554335 3_1:-56436928 None:intergenic
TGATGATTTGTGTGTAGTTG+AGG 0.555687 3_1:+56437500 Msa0363790:three_prime_UTR
ATCACAGCAACAGCAAGCAT+TGG 0.557927 3_1:+56436191 Msa0363790:CDS
GGATGAATCGTATTCCTGAC+GGG 0.561805 3_1:-56436025 None:intergenic
GCAGCAAAGAAAGCGGTTGA+GGG 0.562121 3_1:+56437155 Msa0363790:CDS
TTTCACGAGACCATGTGAAA+GGG 0.563710 3_1:+56437718 Msa0363790:three_prime_UTR
GGTGACTCTGATGGAGCAAA+CGG 0.565178 3_1:+56435913 Msa0363790:CDS
TCCACCTCCTCGTACAACAT+TGG 0.565733 3_1:+56437304 Msa0363790:CDS
CGGGACAATGAATGAAATTG+CGG 0.565903 3_1:+56436341 Msa0363790:CDS
GCAGCTTTAACAGACTGAAA+AGG 0.569244 3_1:-56433894 None:intergenic
AAAGTTGGAGGCAACTCAGA+AGG 0.575379 3_1:+56437073 Msa0363790:CDS
GAAGAAAAGCAATATTGTTG+AGG 0.577100 3_1:+56437397 Msa0363790:CDS
CTTTCACGAGACCATGTGAA+AGG 0.578744 3_1:+56437717 Msa0363790:three_prime_UTR
AGTGGATGCTGCGAAAGCAC+AGG 0.579774 3_1:+56437013 Msa0363790:CDS
ATATTAGTGGTATCTTTCAA+AGG 0.583937 3_1:+56437375 Msa0363790:CDS
AGGAGTTCGAGTCTCTAAAA+CGG 0.584086 3_1:+56436955 Msa0363790:CDS
GCTGTGTCTCTATTTGGTGA+AGG 0.587275 3_1:+56433915 Msa0363790:CDS
AGTCAGGCAAAACAAAAGTA+CGG 0.587853 3_1:+56435892 Msa0363790:CDS
GCTTTAACAGACTGAAAAGG+TGG 0.589140 3_1:-56433891 None:intergenic
AGGATGAATCGTATTCCTGA+CGG 0.591780 3_1:-56436026 None:intergenic
AGTTAGAAAATGCAGTTCAA+AGG 0.592541 3_1:+56435950 Msa0363790:CDS
AAGCGGCAGAAGCTGCAGCT+CGG 0.596772 3_1:+56437213 Msa0363790:CDS
AGCACAGGTAGAAGCTGTGA+AGG 0.598567 3_1:+56437028 Msa0363790:CDS
TAAGGTTAGAGGTGCATCTG+AGG 0.604601 3_1:+56436647 Msa0363790:CDS
GCCAAAAGCTTATTCTGCTG+AGG 0.610112 3_1:+56433971 Msa0363790:CDS
AGATTACAGTGCTAACTGAA+AGG 0.611910 3_1:+56436871 Msa0363790:CDS
AACTATACAGGATTCTCACC+AGG 0.615709 3_1:-56437440 None:intergenic
AGTGAAAGCATTCTTGCGGT+GGG 0.623831 3_1:+56437756 Msa0363790:three_prime_UTR
CTCTCCCAGTCTAAAACCAG+AGG 0.624022 3_1:+56433848 Msa0363790:CDS
GATTTAGATCTAAGATACAA+TGG 0.626073 3_1:+56433791 Msa0363790:exon
TTGAGGGTGAGCTTCGAAGG+TGG 0.626759 3_1:+56437171 Msa0363790:CDS
GTCTCTAAAACGGAAAGTCG+AGG 0.629664 3_1:+56436965 Msa0363790:CDS
TGTTAATGAAGTGTGCTGGA+AGG 0.629758 3_1:+56437538 Msa0363790:three_prime_UTR
CATCCGAAACTGAGGAAGCA+CGG 0.630067 3_1:+56436697 Msa0363790:CDS
TGGAGCTTGAAAGGGCCCAA+AGG 0.633150 3_1:+56435788 Msa0363790:CDS
CTTGGTAGAGACTCTGAAGG+TGG 0.634968 3_1:+56436491 Msa0363790:CDS
TTCACTTCCAATGTTGTACG+AGG 0.636771 3_1:-56437311 None:intergenic
AAGTGAAAGCATTCTTGCGG+TGG 0.639325 3_1:+56437755 Msa0363790:three_prime_UTR
TGCTGCAATGACAATATCGA+CGG 0.647577 3_1:+56436932 Msa0363790:CDS
TCAGTTAACATCCGAAACTG+AGG 0.648666 3_1:+56436689 Msa0363790:CDS
ACTTCCAATGTTGTACGAGG+AGG 0.662570 3_1:-56437308 None:intergenic
CTTTAACAGACTGAAAAGGT+GGG 0.663688 3_1:-56433890 None:intergenic
TGTGAAGGCTAGCGAAAACG+AGG 0.665471 3_1:+56437043 Msa0363790:CDS
TATGAAAACTGCAACACAGG+AGG 0.667826 3_1:+56437106 Msa0363790:CDS
GGCTGAAGCAGCAAAGAAAG+CGG 0.667928 3_1:+56437148 Msa0363790:CDS
GACATGCAGATTCCCAACTG+TGG 0.670611 3_1:-56436574 None:intergenic
ATGCTGCTAAGCAAGATCTG+AGG 0.688485 3_1:+56435998 Msa0363790:CDS
AAGCTTGGTAGAGACTCTGA+AGG 0.694026 3_1:+56436488 Msa0363790:CDS
TGCAATGACAATATCGACGG+AGG 0.702839 3_1:+56436935 Msa0363790:CDS
GTAAAGTGAAAGCATTCTTG+CGG 0.711012 3_1:+56437752 Msa0363790:three_prime_UTR
CCGAAACTGAGGAAGCACGG+CGG 0.740064 3_1:+56436700 Msa0363790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATATTAAGTTGAATTT+TGG + chr3_1:56433157-56433176 Msa0363790:intron 10.0%
!!! GTAAAAATATTTACATTTTT+TGG + chr3_1:56433212-56433231 Msa0363790:intron 10.0%
!!! TTTGAATTTATTTTATCTTT+TGG - chr3_1:56434186-56434205 None:intergenic 10.0%
!! TATAAATATATGCTTATAAT+AGG + chr3_1:56434352-56434371 Msa0363790:intron 10.0%
!! ATAAATATATGCTTATAATA+GGG + chr3_1:56434353-56434372 Msa0363790:intron 10.0%
!!! TGTTATTTCTATTAAAAAAT+GGG - chr3_1:56434824-56434843 None:intergenic 10.0%
!! AAAAAATATTTACCTTACAA+AGG - chr3_1:56432730-56432749 None:intergenic 15.0%
!!! TATTATTGTGTAGTTTTTAA+AGG + chr3_1:56433363-56433382 Msa0363790:intron 15.0%
!!! ATTATTGTGTAGTTTTTAAA+GGG + chr3_1:56433364-56433383 Msa0363790:intron 15.0%
!!! GTTATTTCTATTAAAAAATG+GGG - chr3_1:56434823-56434842 None:intergenic 15.0%
!!! CTGTTATTTCTATTAAAAAA+TGG - chr3_1:56434825-56434844 None:intergenic 15.0%
!!! CTTTATTAGTAATAACTTTT+CGG + chr3_1:56434936-56434955 Msa0363790:intron 15.0%
!! AAAGATATTAAATCTGTATT+TGG + chr3_1:56435176-56435195 Msa0363790:intron 15.0%
!! AAAAAAATTGATACATGTTA+TGG - chr3_1:56435445-56435464 None:intergenic 15.0%
!!! AAAAAATCAAAACTTTTAAG+AGG - chr3_1:56435558-56435577 None:intergenic 15.0%
!!! ATAGATTTAAATTTTTCTAC+TGG - chr3_1:56437632-56437651 None:intergenic 15.0%
!! GTAGAAAAATTTAAATCTAT+TGG + chr3_1:56437632-56437651 Msa0363790:three_prime_UTR 15.0%
!!! CAACTTAATATTTTAACCAA+AGG - chr3_1:56433152-56433171 None:intergenic 20.0%
!! ATATAAAAGAAGCTATTGAT+AGG + chr3_1:56433438-56433457 Msa0363790:intron 20.0%
!!! TAATCTTTTCAATTGGAATT+TGG - chr3_1:56433611-56433630 None:intergenic 20.0%
!!! CAACAAATAATCTTTTCAAT+TGG - chr3_1:56433618-56433637 None:intergenic 20.0%
!! TATCTTAGATCTAAATCTTA+AGG - chr3_1:56433788-56433807 None:intergenic 20.0%
!! TGTAAAACTAAAAACAACAA+TGG + chr3_1:56434048-56434067 Msa0363790:intron 20.0%
!! AAACATATCCTAAAATTTAC+AGG - chr3_1:56434088-56434107 None:intergenic 20.0%
!!! TGTAAATTTTAGGATATGTT+TGG + chr3_1:56434087-56434106 Msa0363790:intron 20.0%
!!! TTTTTCTATAGAAAGTGAAA+AGG - chr3_1:56434497-56434516 None:intergenic 20.0%
!! TGAATATCAAATTGAAGAAT+AGG - chr3_1:56434878-56434897 None:intergenic 20.0%
!! TGCAATAAAGTTCTATTATA+AGG - chr3_1:56434979-56434998 None:intergenic 20.0%
!!! ACTTAATGTTGTTATTTACA+TGG - chr3_1:56435301-56435320 None:intergenic 20.0%
!! AACAACATTAAGTAAAACTA+AGG + chr3_1:56435308-56435327 Msa0363790:intron 20.0%
!! TAAAACTTATTACTGAATCT+AGG + chr3_1:56435836-56435855 Msa0363790:CDS 20.0%
!! AAAACTTATTACTGAATCTA+GGG + chr3_1:56435837-56435856 Msa0363790:CDS 20.0%
!! TCGAAGAAAATTAATATTAG+TGG + chr3_1:56437362-56437381 Msa0363790:CDS 20.0%
!!! TTTATTGGTTTTGAGAATCT+GGG + chr3_1:56432804-56432823 Msa0363790:intron 25.0%
!! AGTATTTTGTGTTTTCATGA+TGG + chr3_1:56432833-56432852 Msa0363790:intron 25.0%
!! GTATTTTGTGTTTTCATGAT+GGG + chr3_1:56432834-56432853 Msa0363790:intron 25.0%
! AAAGGAACCATAATAAAGTA+AGG - chr3_1:56432887-56432906 None:intergenic 25.0%
! TCCTGAAAATTCTAATGTAT+TGG + chr3_1:56433265-56433284 Msa0363790:intron 25.0%
! CCTGAAAATTCTAATGTATT+GGG + chr3_1:56433266-56433285 Msa0363790:intron 25.0%
! GTTTAACAAGCATTATTAGT+TGG + chr3_1:56433317-56433336 Msa0363790:intron 25.0%
!!! AGTTTTTAAAGGGTCTTAAT+TGG + chr3_1:56433374-56433393 Msa0363790:intron 25.0%
!!! TCTTCTACTATGTTTTTAAC+AGG + chr3_1:56433749-56433768 Msa0363790:intron 25.0%
!! GATTTAGATCTAAGATACAA+TGG + chr3_1:56433791-56433810 Msa0363790:exon 25.0%
!!! TTAGTTTTACAACATCACAA+AGG - chr3_1:56434039-56434058 None:intergenic 25.0%
! CAAATAAGTCAATCCAAATT+AGG + chr3_1:56434262-56434281 Msa0363790:intron 25.0%
! AGACAATATAAGACCTAATT+TGG - chr3_1:56434278-56434297 None:intergenic 25.0%
! AGGAAATCAAAAAAATTTCC+AGG - chr3_1:56434412-56434431 None:intergenic 25.0%
! TTTCTATAGAAAAACTGCAA+CGG + chr3_1:56434503-56434522 Msa0363790:intron 25.0%
! AACATAAAAGAATGTTGACA+TGG - chr3_1:56434681-56434700 None:intergenic 25.0%
! AACATATGAAAAGAAACACA+AGG - chr3_1:56434852-56434871 None:intergenic 25.0%
!! GATTATCTGAAGTTGTAATT+AGG + chr3_1:56435030-56435049 Msa0363790:intron 25.0%
! GTACAGAGTATATACAATTT+AGG - chr3_1:56435082-56435101 None:intergenic 25.0%
!!! ATCTTGTTTCTAATTGTCAT+AGG - chr3_1:56435125-56435144 None:intergenic 25.0%
! AATTAGAAACAAGATTTACG+AGG + chr3_1:56435130-56435149 Msa0363790:intron 25.0%
! ATCTGTATTTGGTTATAAGA+TGG + chr3_1:56435187-56435206 Msa0363790:intron 25.0%
! ATGAGATATTCCTACTTAAA+TGG - chr3_1:56435223-56435242 None:intergenic 25.0%
! ATTTAAGTAGGAATATCTCA+TGG + chr3_1:56435222-56435241 Msa0363790:intron 25.0%
!!! AATGTTGTTATTTACATGGA+AGG - chr3_1:56435297-56435316 None:intergenic 25.0%
! CTTGTACAAATCTTTGATAA+TGG - chr3_1:56435394-56435413 None:intergenic 25.0%
! TTATCAAAGATTTGTACAAG+TGG + chr3_1:56435394-56435413 Msa0363790:intron 25.0%
! AATAAGATTACATAGTTCAG+TGG - chr3_1:56435582-56435601 None:intergenic 25.0%
!! ATTTTCTCTTTCTCATTTTG+TGG + chr3_1:56435638-56435657 Msa0363790:intron 25.0%
! AAAAGAGCTAAACAAGTTAA+AGG + chr3_1:56435723-56435742 Msa0363790:CDS 25.0%
! AAAAGAAATTTCAGCTGTAA+AGG + chr3_1:56436134-56436153 Msa0363790:CDS 25.0%
!! TTTCTTTTTGGATTGTTCAA+GGG - chr3_1:56436259-56436278 None:intergenic 25.0%
!! ATTTCTTTTTGGATTGTTCA+AGG - chr3_1:56436260-56436279 None:intergenic 25.0%
!! CAAAGCAAGTAATTTCTTTT+TGG - chr3_1:56436271-56436290 None:intergenic 25.0%
!!! GAAATTACTTGCTTTGAAAA+AGG + chr3_1:56436275-56436294 Msa0363790:CDS 25.0%
!! TTCAAGACTTTTTGTGATTT+CGG - chr3_1:56436310-56436329 None:intergenic 25.0%
! TTTCATGTCAGCTAATTTAT+CGG - chr3_1:56436994-56437013 None:intergenic 25.0%
! ATATTAGTGGTATCTTTCAA+AGG + chr3_1:56437375-56437394 Msa0363790:CDS 25.0%
!! ATTGTATGGTGTTAATAGTT+TGG + chr3_1:56437569-56437588 Msa0363790:three_prime_UTR 25.0%
!! AATAGTTTGGTGACAAATTA+TGG + chr3_1:56437582-56437601 Msa0363790:three_prime_UTR 25.0%
!! ATAGTTTGGTGACAAATTAT+GGG + chr3_1:56437583-56437602 Msa0363790:three_prime_UTR 25.0%
GATAGAGATGTGTTTGAAAA+TGG - chr3_1:56432587-56432606 None:intergenic 30.0%
! TCTTCAGGTTTGAAAATAAC+TGG - chr3_1:56432693-56432712 None:intergenic 30.0%
! GTTAAAGATGGAAGCTTTAT+TGG + chr3_1:56432789-56432808 Msa0363790:intron 30.0%
!!! CTTTATTGGTTTTGAGAATC+TGG + chr3_1:56432803-56432822 Msa0363790:intron 30.0%
TGAGCTACCTTACTTTATTA+TGG + chr3_1:56432877-56432896 Msa0363790:intron 30.0%
GAAACCACAAAACAAAACAA+AGG - chr3_1:56432905-56432924 None:intergenic 30.0%
! TCATTTTCATGTTCTGTTTG+CGG + chr3_1:56432923-56432942 Msa0363790:intron 30.0%
!!! TCTGTCGTTTTAAACATACT+TGG + chr3_1:56432961-56432980 Msa0363790:intron 30.0%
!!! TGATGTTTTTTCCATTCTGA+AGG + chr3_1:56433105-56433124 Msa0363790:intron 30.0%
! CCCAATACATTAGAATTTTC+AGG - chr3_1:56433269-56433288 None:intergenic 30.0%
!! TTTTAAAGGGTCTTAATTGG+TGG + chr3_1:56433377-56433396 Msa0363790:intron 30.0%
CATACAATCTGTAATACTAC+TGG - chr3_1:56433527-56433546 None:intergenic 30.0%
CAGTAGTATTACAGATTGTA+TGG + chr3_1:56433525-56433544 Msa0363790:intron 30.0%
AAAGTCAAGATAGACATGAT+TGG - chr3_1:56433555-56433574 None:intergenic 30.0%
!! CTACTATGTTTTTAACAGGT+TGG + chr3_1:56433753-56433772 Msa0363790:intron 30.0%
!!! AATAAGCTTTTGGCTTCTTA+AGG - chr3_1:56433965-56433984 None:intergenic 30.0%
! CAGTGTATCCTGTAAATTTT+AGG + chr3_1:56434077-56434096 Msa0363790:intron 30.0%
!!! GGTGATTTATTGATTTTTCC+TGG + chr3_1:56434391-56434410 Msa0363790:intron 30.0%
! CATTCTTTTATGTTTCAGCA+TGG + chr3_1:56434687-56434706 Msa0363790:intron 30.0%
! AAAAAATGGGGTATTTCAAC+AGG - chr3_1:56434811-56434830 None:intergenic 30.0%
GAATATCTCATGGATATGAA+GGG + chr3_1:56435232-56435251 Msa0363790:intron 30.0%
TACATTCTAAGCTTGAAAGA+AGG - chr3_1:56435619-56435638 None:intergenic 30.0%
! ATTTTCTAACTCTTCTTTCC+AGG - chr3_1:56435941-56435960 None:intergenic 30.0%
AGTTAGAAAATGCAGTTCAA+AGG + chr3_1:56435950-56435969 Msa0363790:CDS 30.0%
! TCAAGACTTTTTGTGATTTC+GGG - chr3_1:56436309-56436328 None:intergenic 30.0%
GAAAAAACTGAAAGAAGCAA+CGG + chr3_1:56436803-56436822 Msa0363790:CDS 30.0%
TAAATTAGCTGACATGAAAG+TGG + chr3_1:56436995-56437014 Msa0363790:CDS 30.0%
!!! AAACGAGGTTTTGAAAAAGT+TGG + chr3_1:56437058-56437077 Msa0363790:CDS 30.0%
! TTTTGAATCCTATAATGCTG+AGG - chr3_1:56437275-56437294 None:intergenic 30.0%
GAAGAAAAGCAATATTGTTG+AGG + chr3_1:56437397-56437416 Msa0363790:CDS 30.0%
AAAAGCAATATTGTTGAGGA+TGG + chr3_1:56437401-56437420 Msa0363790:CDS 30.0%
! ATTTTGTTAATGAAGTGTGC+TGG + chr3_1:56437534-56437553 Msa0363790:three_prime_UTR 30.0%
!!! GGAAGGAAAGTTTTATTGTA+TGG + chr3_1:56437555-56437574 Msa0363790:three_prime_UTR 30.0%
GGACATGCATTATATGTAAA+TGG + chr3_1:56437604-56437623 Msa0363790:three_prime_UTR 30.0%
TGATATTAAGCTTTCATGAC+TGG + chr3_1:56437683-56437702 Msa0363790:three_prime_UTR 30.0%
GTGTTTGAAAATGGAAAAGC+TGG - chr3_1:56432578-56432597 None:intergenic 35.0%
CTTGAAGAATCACCTTTGTA+AGG + chr3_1:56432715-56432734 Msa0363790:five_prime_UTR 35.0%
!! GATGCTGATTCAGTTAAAGA+TGG + chr3_1:56432777-56432796 Msa0363790:intron 35.0%
!!! GGTTCCTTTGTTTTGTTTTG+TGG + chr3_1:56432898-56432917 Msa0363790:intron 35.0%
TCAGACACAAACAAAGTCAA+GGG - chr3_1:56433036-56433055 None:intergenic 35.0%
TTCAGACACAAACAAAGTCA+AGG - chr3_1:56433037-56433056 None:intergenic 35.0%
TTCCAAACTGAAAAAGCCTT+TGG + chr3_1:56433133-56433152 Msa0363790:intron 35.0%
!!! AACCAAAGGCTTTTTCAGTT+TGG - chr3_1:56433138-56433157 None:intergenic 35.0%
TCTTAATTGGTGGAAGATTG+TGG + chr3_1:56433387-56433406 Msa0363790:intron 35.0%
ATACAATGGTCGCAAAAATC+CGG + chr3_1:56433805-56433824 Msa0363790:exon 35.0%
CTTTAACAGACTGAAAAGGT+GGG - chr3_1:56433893-56433912 None:intergenic 35.0%
TTCACAAGTTATCTTAGCGT+AGG + chr3_1:56434233-56434252 Msa0363790:intron 35.0%
!! TTCTGGAACTGACACTATAT+CGG - chr3_1:56434439-56434458 None:intergenic 35.0%
AGTGAAAAGGCAAGATGTAA+GGG - chr3_1:56434484-56434503 None:intergenic 35.0%
AAGTGAAAAGGCAAGATGTA+AGG - chr3_1:56434485-56434504 None:intergenic 35.0%
GTTTGCATAACATTGAAGTC+TGG - chr3_1:56434548-56434567 None:intergenic 35.0%
! AAAAGGAGAGTATGAGTTAG+AGG - chr3_1:56434648-56434667 None:intergenic 35.0%
ACACAGATACAAAGAAGACA+TGG - chr3_1:56434742-56434761 None:intergenic 35.0%
ATGTCTTCTTTGTATCTGTG+TGG + chr3_1:56434741-56434760 Msa0363790:intron 35.0%
! ATCTGAAGTTGTAATTAGGC+TGG + chr3_1:56435034-56435053 Msa0363790:intron 35.0%
! TGTGATGTTGCCATTTAAGT+AGG + chr3_1:56435210-56435229 Msa0363790:intron 35.0%
GGAATATCTCATGGATATGA+AGG + chr3_1:56435231-56435250 Msa0363790:intron 35.0%
GTTCTTGAATCGAATGAAAC+AGG - chr3_1:56435263-56435282 None:intergenic 35.0%
AAAGATTTGTACAAGTGGTG+AGG + chr3_1:56435399-56435418 Msa0363790:intron 35.0%
AAAGAACGCTGAAACTACTA+AGG + chr3_1:56435753-56435772 Msa0363790:CDS 35.0%
AGTCAGGCAAAACAAAAGTA+CGG + chr3_1:56435892-56435911 Msa0363790:CDS 35.0%
AGAAGCTGAAAATGCAATGA+AGG + chr3_1:56436083-56436102 Msa0363790:CDS 35.0%
AAAAAGTCTTGAAGCACAGT+TGG + chr3_1:56436317-56436336 Msa0363790:CDS 35.0%
AAACAAAAGATCGTCTGACT+TGG + chr3_1:56436383-56436402 Msa0363790:CDS 35.0%
! CTCTGTGAAAACTGTTACTT+CGG + chr3_1:56436407-56436426 Msa0363790:CDS 35.0%
AGAAAACACTCTTAGAAGCT+TGG + chr3_1:56436473-56436492 Msa0363790:CDS 35.0%
! GAAAGAACATTCTGAGTTGA+AGG + chr3_1:56436530-56436549 Msa0363790:CDS 35.0%
AGATTACAGTGCTAACTGAA+AGG + chr3_1:56436871-56436890 Msa0363790:CDS 35.0%
AGATATGAAAACTGCAACAC+AGG + chr3_1:56437103-56437122 Msa0363790:CDS 35.0%
TTCTGATGACATCTGTGTTT+CGG - chr3_1:56437246-56437265 None:intergenic 35.0%
AATCATCTCCTCAGCATTAT+AGG + chr3_1:56437264-56437283 Msa0363790:CDS 35.0%
AGCTTCACAACAAACTATAC+AGG - chr3_1:56437455-56437474 None:intergenic 35.0%
! TGATGATTTGTGTGTAGTTG+AGG + chr3_1:56437500-56437519 Msa0363790:three_prime_UTR 35.0%
!! GTAAAGTGAAAGCATTCTTG+CGG + chr3_1:56437752-56437771 Msa0363790:three_prime_UTR 35.0%
GTGATTCTTCAAGACTCTTC+AGG - chr3_1:56432708-56432727 None:intergenic 40.0%
!!! CATGATGGGTTTTTGTTGTG+TGG + chr3_1:56432848-56432867 Msa0363790:intron 40.0%
TTGGAACATCACCTTCAGAA+TGG - chr3_1:56433119-56433138 None:intergenic 40.0%
!! CTGTAATACTACTGGCTCTT+AGG - chr3_1:56433519-56433538 None:intergenic 40.0%
GCTTTAACAGACTGAAAAGG+TGG - chr3_1:56433894-56433913 None:intergenic 40.0%
! GCAGCTTTAACAGACTGAAA+AGG - chr3_1:56433897-56433916 None:intergenic 40.0%
AAAGCTGCTGTGTCTCTATT+TGG + chr3_1:56433909-56433928 Msa0363790:CDS 40.0%
!!! TTTGGTGAAGGTGCTTTTTC+TGG + chr3_1:56433927-56433946 Msa0363790:CDS 40.0%
!!! TTGGTGAAGGTGCTTTTTCT+GGG + chr3_1:56433928-56433947 Msa0363790:CDS 40.0%
! ACCTCAGCAGAATAAGCTTT+TGG - chr3_1:56433975-56433994 None:intergenic 40.0%
ACTGACACTATATCGGTATC+AGG - chr3_1:56434432-56434451 None:intergenic 40.0%
! GTTAGGCAAGTGTGGTTTTT+CGG - chr3_1:56434586-56434605 None:intergenic 40.0%
GAAAGAAGAAAGAGCGAGTT+AGG - chr3_1:56434603-56434622 None:intergenic 40.0%
GGAGTGAGAATCTATGTAGA+AGG - chr3_1:56434627-56434646 None:intergenic 40.0%
AATGTTGACATGGCAGTGAA+TGG - chr3_1:56434671-56434690 None:intergenic 40.0%
CAGATACAAAGAAGACATGG+TGG - chr3_1:56434739-56434758 None:intergenic 40.0%
GTTGTAATTAGGCTGGACTT+TGG + chr3_1:56435041-56435060 Msa0363790:intron 40.0%
AGGTGTCTCAACAATGTTCT+TGG + chr3_1:56435150-56435169 Msa0363790:intron 40.0%
!! TCACTAGAGAGTTTTAGCCA+AGG + chr3_1:56435678-56435697 Msa0363790:intron 40.0%
! CAAATCATCGACTGTCCTTT+GGG - chr3_1:56435806-56435825 None:intergenic 40.0%
! TCAAATCATCGACTGTCCTT+TGG - chr3_1:56435807-56435826 None:intergenic 40.0%
AACAGAAGCTGCAAAAAGTC+AGG + chr3_1:56435876-56435895 Msa0363790:CDS 40.0%
AGGATGAATCGTATTCCTGA+CGG - chr3_1:56436029-56436048 None:intergenic 40.0%
GCAAACAAAGCTAGCATATG+TGG + chr3_1:56436167-56436186 Msa0363790:CDS 40.0%
CGCAATTTCATTCATTGTCC+CGG - chr3_1:56436343-56436362 None:intergenic 40.0%
CGGGACAATGAATGAAATTG+CGG + chr3_1:56436341-56436360 Msa0363790:CDS 40.0%
GAAGGAAAAAGAGTCCGAAT+TGG + chr3_1:56436548-56436567 Msa0363790:CDS 40.0%
! GCTGAAGAATCTAAGGTTAG+AGG + chr3_1:56436636-56436655 Msa0363790:CDS 40.0%
TCAGTTAACATCCGAAACTG+AGG + chr3_1:56436689-56436708 Msa0363790:CDS 40.0%
TGCTGCAATGACAATATCGA+CGG + chr3_1:56436932-56436951 Msa0363790:CDS 40.0%
! AGGAGTTCGAGTCTCTAAAA+CGG + chr3_1:56436955-56436974 Msa0363790:CDS 40.0%
!!! CGAGGTTTTGAAAAAGTTGG+AGG + chr3_1:56437061-56437080 Msa0363790:CDS 40.0%
TATGAAAACTGCAACACAGG+AGG + chr3_1:56437106-56437125 Msa0363790:CDS 40.0%
TTCACTTCCAATGTTGTACG+AGG - chr3_1:56437314-56437333 None:intergenic 40.0%
AACTATACAGGATTCTCACC+AGG - chr3_1:56437443-56437462 None:intergenic 40.0%
TGTTAATGAAGTGTGCTGGA+AGG + chr3_1:56437538-56437557 Msa0363790:three_prime_UTR 40.0%
AGCTTTCATGACTGGTAGAT+TGG + chr3_1:56437691-56437710 Msa0363790:three_prime_UTR 40.0%
TTTCACATGGTCTCGTGAAA+GGG - chr3_1:56437718-56437737 None:intergenic 40.0%
TTTCACGAGACCATGTGAAA+GGG + chr3_1:56437718-56437737 Msa0363790:three_prime_UTR 40.0%
! GAGAGAGAGAGAGATGGTTT+TGG - chr3_1:56432621-56432640 None:intergenic 45.0%
!!! GGTTTTGAGAATCTGGGTTG+TGG + chr3_1:56432810-56432829 Msa0363790:intron 45.0%
GAGCTTTCAGCTGTGCAAAT+AGG - chr3_1:56433247-56433266 None:intergenic 45.0%
GGTGGAAGATTGTGGAATCA+TGG + chr3_1:56433395-56433414 Msa0363790:intron 45.0%
AAAATCCGGCAAACTGCTAC+TGG + chr3_1:56433819-56433838 Msa0363790:CDS 45.0%
!!! TCTGGTTTTAGACTGGGAGA+GGG - chr3_1:56433849-56433868 None:intergenic 45.0%
!!! CCAACCTCTGGTTTTAGACT+GGG - chr3_1:56433855-56433874 None:intergenic 45.0%
!!! TCCAACCTCTGGTTTTAGAC+TGG - chr3_1:56433856-56433875 None:intergenic 45.0%
! GCTGTGTCTCTATTTGGTGA+AGG + chr3_1:56433915-56433934 Msa0363790:CDS 45.0%
!!! TGGTGAAGGTGCTTTTTCTG+GGG + chr3_1:56433929-56433948 Msa0363790:CDS 45.0%
!!! GCTTTTGGCTTCTTAAGGAC+AGG - chr3_1:56433960-56433979 None:intergenic 45.0%
GCCAAAAGCTTATTCTGCTG+AGG + chr3_1:56433971-56433990 Msa0363790:CDS 45.0%
! ATAGGGCTAGAAAGTGCAGA+CGG + chr3_1:56434370-56434389 Msa0363790:intron 45.0%
! TTGTGTGCAGAGCATTCTTC+TGG - chr3_1:56434456-56434475 None:intergenic 45.0%
ATGCAAACTTCTTTGCCCGA+AGG + chr3_1:56434560-56434579 Msa0363790:intron 45.0%
!! AAGTGTGGTTTTTCGGCCTT+CGG - chr3_1:56434579-56434598 None:intergenic 45.0%
GACATGGCAGTGAATGGAAA+AGG - chr3_1:56434665-56434684 None:intergenic 45.0%
TACATGAAGTTGCGTCTCCT+TGG - chr3_1:56435698-56435717 None:intergenic 45.0%
TACTAAGGCTCAAGCTCTTG+TGG + chr3_1:56435768-56435787 Msa0363790:CDS 45.0%
AAGCTCTTGTGGAGCTTGAA+AGG + chr3_1:56435779-56435798 Msa0363790:CDS 45.0%
AGCTCTTGTGGAGCTTGAAA+GGG + chr3_1:56435780-56435799 Msa0363790:CDS 45.0%
! CAAAAGTACGGTGACTCTGA+TGG + chr3_1:56435904-56435923 Msa0363790:CDS 45.0%
ATGCTGCTAAGCAAGATCTG+AGG + chr3_1:56435998-56436017 Msa0363790:CDS 45.0%
GGATGAATCGTATTCCTGAC+GGG - chr3_1:56436028-56436047 None:intergenic 45.0%
ATCACAGCAACAGCAAGCAT+TGG + chr3_1:56436191-56436210 Msa0363790:CDS 45.0%
! ACTGTTACTTCGGAGCTTGA+TGG + chr3_1:56436417-56436436 Msa0363790:CDS 45.0%
TCCGAATTGGAATCCACAGT+TGG + chr3_1:56436561-56436580 Msa0363790:CDS 45.0%
CCCAACTGTGGATTCCAATT+CGG - chr3_1:56436565-56436584 None:intergenic 45.0%
CCGAATTGGAATCCACAGTT+GGG + chr3_1:56436562-56436581 Msa0363790:CDS 45.0%
CTTAGATTCTTCAGCCGAAC+AGG - chr3_1:56436631-56436650 None:intergenic 45.0%
CTGTTCGGCTGAAGAATCTA+AGG + chr3_1:56436629-56436648 Msa0363790:CDS 45.0%
! TAAGGTTAGAGGTGCATCTG+AGG + chr3_1:56436647-56436666 Msa0363790:CDS 45.0%
TGAAGCTACCAAGCTTGCAT+TGG + chr3_1:56436770-56436789 Msa0363790:CDS 45.0%
TGCTTCTTCCAATGCAAGCT+TGG - chr3_1:56436781-56436800 None:intergenic 45.0%
GCATCTACATCGTCAGAATC+CGG + chr3_1:56436909-56436928 Msa0363790:CDS 45.0%
CGATATTGTCATTGCAGCAC+CGG - chr3_1:56436931-56436950 None:intergenic 45.0%
TGCAATGACAATATCGACGG+AGG + chr3_1:56436935-56436954 Msa0363790:CDS 45.0%
!! GTCTCTAAAACGGAAAGTCG+AGG + chr3_1:56436965-56436984 Msa0363790:CDS 45.0%
AAAGTTGGAGGCAACTCAGA+AGG + chr3_1:56437073-56437092 Msa0363790:CDS 45.0%
AACACAGGAGGCCTTGAAAA+AGG + chr3_1:56437118-56437137 Msa0363790:CDS 45.0%
!! AGCCATCTCAGCCTTTTTCA+AGG - chr3_1:56437132-56437151 None:intergenic 45.0%
GGAGCGAGAACAGAAAAAAG+CGG + chr3_1:56437196-56437215 Msa0363790:CDS 45.0%
ACTTCCAATGTTGTACGAGG+AGG - chr3_1:56437311-56437330 None:intergenic 45.0%
! GGATCTGCTTCTTATTTGCC+TGG + chr3_1:56437422-56437441 Msa0363790:CDS 45.0%
CTTTCACATGGTCTCGTGAA+AGG - chr3_1:56437719-56437738 None:intergenic 45.0%
CTTTCACGAGACCATGTGAA+AGG + chr3_1:56437717-56437736 Msa0363790:three_prime_UTR 45.0%
CTCTATCTCTCCCTTTCACA+TGG - chr3_1:56437731-56437750 None:intergenic 45.0%
!!! TAAAAATATTTACATTTTTT+GGG + chr3_1:56433213-56433232 Msa0363790:intron 5.0%
GAGAGAGAGAGAGAGAGAGA+TGG - chr3_1:56432627-56432646 None:intergenic 50.0%
!! CTACTGGCTCTTAGGTTCAC+TGG - chr3_1:56433511-56433530 None:intergenic 50.0%
!!! CTCTGGTTTTAGACTGGGAG+AGG - chr3_1:56433850-56433869 None:intergenic 50.0%
! CTCTCCCAGTCTAAAACCAG+AGG + chr3_1:56433848-56433867 Msa0363790:CDS 50.0%
! CCCAGTCTAAAACCAGAGGT+TGG + chr3_1:56433852-56433871 Msa0363790:CDS 50.0%
GTGTCAATCTCTCCAACCTC+TGG - chr3_1:56433867-56433886 None:intergenic 50.0%
AACAGACTGAAAAGGTGGGC+TGG - chr3_1:56433889-56433908 None:intergenic 50.0%
!! TCAGAGTGCTGGCTTGCAAT+GGG - chr3_1:56434318-56434337 None:intergenic 50.0%
TCTTAGCAGAGTCAGAGTGC+TGG - chr3_1:56434329-56434348 None:intergenic 50.0%
!! AGTGTGGTTTTTCGGCCTTC+GGG - chr3_1:56434578-56434597 None:intergenic 50.0%
AAGAGCGAGTTAGGCAAGTG+TGG - chr3_1:56434594-56434613 None:intergenic 50.0%
GGTGACTCTGATGGAGCAAA+CGG + chr3_1:56435913-56435932 Msa0363790:CDS 50.0%
AGATCTGAGGAAAACCCGTC+AGG + chr3_1:56436011-56436030 Msa0363790:CDS 50.0%
AGCTGACACTCTTGCATTCG+AGG - chr3_1:56436049-56436068 None:intergenic 50.0%
AGTCTTGAAGCACAGTTGGC+CGG + chr3_1:56436321-56436340 Msa0363790:CDS 50.0%
TGCGGCTCTGCATACAGAAA+TGG + chr3_1:56436359-56436378 Msa0363790:CDS 50.0%
GACATGCAGATTCCCAACTG+TGG - chr3_1:56436577-56436596 None:intergenic 50.0%
CATCCGAAACTGAGGAAGCA+CGG + chr3_1:56436697-56436716 Msa0363790:CDS 50.0%
AGCACAGGTAGAAGCTGTGA+AGG + chr3_1:56437028-56437047 Msa0363790:CDS 50.0%
TGTGAAGGCTAGCGAAAACG+AGG + chr3_1:56437043-56437062 Msa0363790:CDS 50.0%
GGCCTTGAAAAAGGCTGAGA+TGG + chr3_1:56437127-56437146 Msa0363790:CDS 50.0%
GGCTGAAGCAGCAAAGAAAG+CGG + chr3_1:56437148-56437167 Msa0363790:CDS 50.0%
AGCAGCAAAGAAAGCGGTTG+AGG + chr3_1:56437154-56437173 Msa0363790:CDS 50.0%
GCAGCAAAGAAAGCGGTTGA+GGG + chr3_1:56437155-56437174 Msa0363790:CDS 50.0%
TCCACCTCCTCGTACAACAT+TGG + chr3_1:56437304-56437323 Msa0363790:CDS 50.0%
TCCAATGTTGTACGAGGAGG+TGG - chr3_1:56437308-56437327 None:intergenic 50.0%
GAGAGCCAGTAGCAGTTTGC+CGG - chr3_1:56433827-56433846 None:intergenic 55.0%
!! GTCAGAGTGCTGGCTTGCAA+TGG - chr3_1:56434319-56434338 None:intergenic 55.0%
TGGAGCTTGAAAGGGCCCAA+AGG + chr3_1:56435788-56435807 Msa0363790:CDS 55.0%
GTCTTGAAGCACAGTTGGCC+GGG + chr3_1:56436322-56436341 Msa0363790:CDS 55.0%
GTCTGAGCTCGAAGCCTGTT+CGG + chr3_1:56436614-56436633 Msa0363790:CDS 55.0%
! AGTGGATGCTGCGAAAGCAC+AGG + chr3_1:56437013-56437032 Msa0363790:CDS 55.0%
TTGAGGGTGAGCTTCGAAGG+TGG + chr3_1:56437171-56437190 Msa0363790:CDS 55.0%
CTGATGGAGCAAACGGTGCC+TGG + chr3_1:56435920-56435939 Msa0363790:CDS 60.0%
CCGCCGTGCTTCCTCAGTTT+CGG - chr3_1:56436703-56436722 None:intergenic 60.0%
! CCGAAACTGAGGAAGCACGG+CGG + chr3_1:56436700-56436719 Msa0363790:CDS 60.0%
! CGAAACTGAGGAAGCACGGC+GGG + chr3_1:56436701-56436720 Msa0363790:CDS 60.0%
CGGTTGAGGGTGAGCTTCGA+AGG + chr3_1:56437168-56437187 Msa0363790:CDS 60.0%
AGGGTGAGCTTCGAAGGTGG+CGG + chr3_1:56437174-56437193 Msa0363790:CDS 60.0%
AAGCGGCAGAAGCTGCAGCT+CGG + chr3_1:56437213-56437232 Msa0363790:CDS 60.0%
GGGTGAGCTTCGAAGGTGGC+GGG + chr3_1:56437175-56437194 Msa0363790:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 56432511 56437777 56432511 ID=Msa0363790;Name=Msa0363790
chr3_1 mRNA 56432511 56437777 56432511 ID=Msa0363790-mRNA-1;Parent=Msa0363790;Name=Msa0363790-mRNA-1;_AED=0.15;_eAED=0.15;_QI=265|1|1|1|0.5|0.33|3|317|652
chr3_1 exon 56432511 56432736 56432511 ID=Msa0363790-mRNA-1:exon:10371;Parent=Msa0363790-mRNA-1
chr3_1 exon 56433771 56433992 56433771 ID=Msa0363790-mRNA-1:exon:10372;Parent=Msa0363790-mRNA-1
chr3_1 exon 56435685 56437777 56435685 ID=Msa0363790-mRNA-1:exon:10373;Parent=Msa0363790-mRNA-1
chr3_1 five_prime_UTR 56432511 56432736 56432511 ID=Msa0363790-mRNA-1:five_prime_utr;Parent=Msa0363790-mRNA-1
chr3_1 five_prime_UTR 56433771 56433809 56433771 ID=Msa0363790-mRNA-1:five_prime_utr;Parent=Msa0363790-mRNA-1
chr3_1 CDS 56433810 56433992 56433810 ID=Msa0363790-mRNA-1:cds;Parent=Msa0363790-mRNA-1
chr3_1 CDS 56435685 56437460 56435685 ID=Msa0363790-mRNA-1:cds;Parent=Msa0363790-mRNA-1
chr3_1 three_prime_UTR 56437461 56437777 56437461 ID=Msa0363790-mRNA-1:three_prime_utr;Parent=Msa0363790-mRNA-1
Gene Sequence

>Msa0363790

ATGGTCGCAAAAATCCGGCAAACTGCTACTGGCTCTCCCTCTCCCAGTCTAAAACCAGAGGTTGGAGAGATTGACACCAGCCCACCTTTTCAGTCTGTTAAAGCTGCTGTGTCTCTATTTGGTGAAGGTGCTTTTTCTGGGGAAAGACCTGTCCTTAAGAAGCCAAAAGCTTATTCTGCTGAGAGAGTTTTAGCCAAGGAGACGCAACTTCATGTAGCTGAAAAAGAGCTAAACAAGTTAAAGGAACAAGTAAAGAACGCTGAAACTACTAAGGCTCAAGCTCTTGTGGAGCTTGAAAGGGCCCAAAGGACAGTCGATGATTTGACACAGAAGCTAAAACTTATTACTGAATCTAGGGAGTTAGCAACGAAAGCAACAGAAGCTGCAAAAAGTCAGGCAAAACAAAAGTACGGTGACTCTGATGGAGCAAACGGTGCCTGGAAAGAAGAGTTAGAAAATGCAGTTCAAAGGTATGCATCTATCATGACAGAACTTGATGCTGCTAAGCAAGATCTGAGGAAAACCCGTCAGGAATACGATTCATCCTCGAATGCAAGAGTGTCAGCTGTCAAGAGAACAGAAGAAGCTGAAAATGCAATGAAGGAAAACACAGAAAGAGTATCTGAGCTGTCAAAAGAAATTTCAGCTGTAAAGGAGTCAATTGAGCAAACAAAGCTAGCATATGTGGAATCACAGCAACAGCAAGCATTGGTATTATCTGAAAAAGATGCTCTTAGACAATCATACAAAGCTACCCTTGAACAATCCAAAAAGAAATTACTTGCTTTGAAAAAGGAATTTAATCCCGAAATCACAAAAAGTCTTGAAGCACAGTTGGCCGGGACAATGAATGAAATTGCGGCTCTGCATACAGAAATGGAAAACAAAAGATCGTCTGACTTGGACTCTGTGAAAACTGTTACTTCGGAGCTTGATGGTGCGAAAGAATCGCTGCAGAAAGTAGTAGATGAAGAAAACACTCTTAGAAGCTTGGTAGAGACTCTGAAGGTGGAACTAGAGAATGTAAAGAAAGAACATTCTGAGTTGAAGGAAAAAGAGTCCGAATTGGAATCCACAGTTGGGAATCTGCATGTCAAACTTCGCAAAAGTAAGTCTGAGCTCGAAGCCTGTTCGGCTGAAGAATCTAAGGTTAGAGGTGCATCTGAGGAAATGATCTTGACGCTGAGTCAGTTAACATCCGAAACTGAGGAAGCACGGCGGGAAGCAGAAGATATGAAGAACAAGACAGAAGAGCTAAAGAAAGAAGCTGAAGCTACCAAGCTTGCATTGGAAGAAGCAGAGAAAAAACTGAAAGAAGCAACGGAAGAAGCAGAAGCAGCAAAAGCAGCTGAAGCTAGTGCAATCGAGCAGATTACAGTGCTAACTGAAAGGACTAGTGCAAGACGTGCATCTACATCGTCAGAATCCGGTGCTGCAATGACAATATCGACGGAGGAGTTCGAGTCTCTAAAACGGAAAGTCGAGGAATCCGATAAATTAGCTGACATGAAAGTGGATGCTGCGAAAGCACAGGTAGAAGCTGTGAAGGCTAGCGAAAACGAGGTTTTGAAAAAGTTGGAGGCAACTCAGAAGGAGATTGAAGATATGAAAACTGCAACACAGGAGGCCTTGAAAAAGGCTGAGATGGCTGAAGCAGCAAAGAAAGCGGTTGAGGGTGAGCTTCGAAGGTGGCGGGAGCGAGAACAGAAAAAAGCGGCAGAAGCTGCAGCTCGGATACTAGCCGAAACACAGATGTCATCAGAATCATCTCCTCAGCATTATAGGATTCAAAAGCAGAATGTTCCACCTCCTCGTACAACATTGGAAGTGAAGAAGTTAGATAAAGAGAAGATTTCAGTTTCGAAGAAAATTAATATTAGTGGTATCTTTCAAAGGAAGAAAAGCAATATTGTTGAGGATGGATCTGCTTCTTATTTGCCTGGTGAGAATCCTGTATAG

Protein sequence

>Msa0363790

MVAKIRQTATGSPSPSLKPEVGEIDTSPPFQSVKAAVSLFGEGAFSGERPVLKKPKAYSAERVLAKETQLHVAEKELNKLKEQVKNAETTKAQALVELERAQRTVDDLTQKLKLITESRELATKATEAAKSQAKQKYGDSDGANGAWKEELENAVQRYASIMTELDAAKQDLRKTRQEYDSSSNARVSAVKRTEEAENAMKENTERVSELSKEISAVKESIEQTKLAYVESQQQQALVLSEKDALRQSYKATLEQSKKKLLALKKEFNPEITKSLEAQLAGTMNEIAALHTEMENKRSSDLDSVKTVTSELDGAKESLQKVVDEENTLRSLVETLKVELENVKKEHSELKEKESELESTVGNLHVKLRKSKSELEACSAEESKVRGASEEMILTLSQLTSETEEARREAEDMKNKTEELKKEAEATKLALEEAEKKLKEATEEAEAAKAAEASAIEQITVLTERTSARRASTSSESGAAMTISTEEFESLKRKVEESDKLADMKVDAAKAQVEAVKASENEVLKKLEATQKEIEDMKTATQEALKKAEMAEAAKKAVEGELRRWREREQKKAAEAAARILAETQMSSESSPQHYRIQKQNVPPPRTTLEVKKLDKEKISVSKKINISGIFQRKKSNIVEDGSASYLPGENPV*