AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0486690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0486690 MtrunA17_Chr3g0102681 97.393 652 17 0 1 652 1 652 0.0 1247
Msa0486690 MtrunA17_Chr3g0078801 59.281 668 247 8 1 652 1 659 0.0 624
Msa0486690 MtrunA17_Chr5g0446731 58.683 668 251 8 1 652 1 659 0.0 623
Msa0486690 MtrunA17_Chr2g0290651 43.894 565 305 7 11 570 8 565 7.45e-114 353
Msa0486690 MtrunA17_Chr4g0076431 45.115 563 272 11 14 566 6 541 1.23e-97 310
Msa0486690 MtrunA17_Chr3g0133891 30.033 606 387 10 4 580 269 866 4.21e-43 167
Msa0486690 MtrunA17_Chr1g0153431 27.603 634 389 15 11 594 257 870 1.05e-36 147
Msa0486690 MtrunA17_Chr4g0075951 43.131 313 160 6 261 566 4 305 2.17e-34 133
Msa0486690 MtrunA17_Chr7g0251231 29.167 648 386 19 31 637 12 627 1.48e-26 115
Msa0486690 MtrunA17_Chr8g0369191 30.890 573 321 16 24 571 27 549 3.39e-25 110
Msa0486690 MtrunA17_Chr7g0244501 27.473 273 193 2 299 571 166 433 9.81e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0486690 AT5G55860.1 55.673 661 272 11 1 652 1 649 0.0 578
Msa0486690 AT1G12150.2 40.934 557 307 4 12 568 9 543 3.20e-108 338
Msa0486690 AT1G12150.1 40.934 557 307 4 12 568 9 543 3.20e-108 338
Msa0486690 AT4G17210.1 32.925 571 328 9 2 565 1 523 3.83e-63 218
Msa0486690 AT2G26570.1 29.711 589 382 9 9 573 151 731 4.82e-40 157
Msa0486690 AT2G26570.2 29.711 589 382 9 9 573 151 731 4.82e-40 157
Msa0486690 AT4G33390.1 28.843 579 367 10 24 571 156 720 3.71e-31 130
Msa0486690 AT5G42880.1 27.979 579 370 13 11 571 117 666 3.66e-25 111
Msa0486690 AT1G66840.2 27.916 523 321 10 32 531 11 500 2.89e-23 105
Msa0486690 AT1G66840.1 27.916 523 321 10 32 531 11 500 2.89e-23 105
Msa0486690 AT1G45545.1 25.926 594 376 14 3 576 134 683 8.65e-21 97.8
Msa0486690 AT1G45545.2 25.926 594 376 14 3 576 135 684 1.11e-20 97.4
Msa0486690 AT3G13190.4 32.770 296 106 7 300 592 93 298 1.71e-18 87.4
Msa0486690 AT3G13190.4 43.678 87 44 1 28 114 2 83 8.56e-11 64.3
Msa0486690 AT3G13190.2 32.770 296 106 7 300 592 93 298 1.71e-18 87.4
Msa0486690 AT3G13190.2 43.678 87 44 1 28 114 2 83 8.56e-11 64.3
Msa0486690 AT3G13190.1 32.770 296 106 7 300 592 93 298 1.71e-18 87.4
Msa0486690 AT3G13190.1 43.678 87 44 1 28 114 2 83 8.56e-11 64.3
Msa0486690 AT3G13190.3 32.770 296 106 7 300 592 93 298 1.71e-18 87.4
Msa0486690 AT3G13190.3 43.678 87 44 1 28 114 2 83 8.56e-11 64.3

Find 127 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGTTTGGTGACAAATTA+TGG 0.127940 3_4:-4732734 Msa0486690:three_prime_UTR
GAAATTACTTGCTTTGAAAA+AGG 0.226698 3_4:-4734041 Msa0486690:CDS
AATCATCTCCTCAGCATTAT+AGG 0.237681 3_4:-4733052 Msa0486690:CDS
GTGATTCTTCAAAACTCTTC+AGG 0.253722 3_4:+4737606 None:intergenic
AAAAGAGCTAAACAAGTTAA+AGG 0.270733 3_4:-4734593 Msa0486690:CDS
CTCTGTGAAAACTGTTACTT+TGG 0.295769 3_4:-4733909 Msa0486690:CDS
GATAGAGATGTGTTTGAAAA+TGG 0.297959 3_4:+4737709 None:intergenic
GGACATGCATTATATGTAAA+TGG 0.299725 3_4:-4732712 Msa0486690:three_prime_UTR
AAAGCTGCTGTGTCTCTATT+TGG 0.302297 3_4:-4736405 Msa0486690:CDS
ACCTCAGCAGAATAAGCTTT+TGG 0.303574 3_4:+4736342 None:intergenic
TTTCATGTCAGCTAATTTAT+CGG 0.305879 3_4:+4733325 None:intergenic
CCGCCGTGCTTCCTCAGTTT+CGG 0.320227 3_4:+4733616 None:intergenic
TCGAAGAAAATTAATATTAG+TGG 0.333342 3_4:-4732954 Msa0486690:CDS
AACACAGGAGGCCTTGAAAA+AGG 0.341599 3_4:-4733198 Msa0486690:CDS
TCAAATCATCGACTGTCCTT+TGG 0.346505 3_4:+4734512 None:intergenic
AGCTTTCATGACTGGTAGAT+TGG 0.347786 3_4:-4732625 Msa0486690:three_prime_UTR
TAAAACTTATTACTGAATCT+AGG 0.353268 3_4:-4734480 Msa0486690:CDS
ATTGTATGGTGTTAATAGTT+TGG 0.355345 3_4:-4732747 Msa0486690:three_prime_UTR
TATCTTAGATCTAAATCTTA+AGG 0.355565 3_4:+4736529 None:intergenic
CGCAATTTCATTCATTGTCT+CGG 0.364944 3_4:+4733976 None:intergenic
GTTCGTTCACTAGAGAGTTT+TGG 0.370640 3_4:-4734644 Msa0486690:intron
GAGAGCCAGTAGCAGTTTGC+CGG 0.372052 3_4:+4736490 None:intergenic
CTTAGATTCTTCAGCCGAAC+AGG 0.377156 3_4:+4733688 None:intergenic
ATAGTTTGGTGACAAATTAT+GGG 0.378834 3_4:-4732733 Msa0486690:three_prime_UTR
CAAATCATCGACTGTCCTTT+GGG 0.385506 3_4:+4734513 None:intergenic
TTCTGATGACATCTGTGTTT+CGG 0.386782 3_4:+4733073 None:intergenic
CTGATGGAGCAAACGGTGCC+TGG 0.387841 3_4:-4734396 Msa0486690:CDS
GGATCTGCTTCTTATTTGCC+TGG 0.393498 3_4:-4732894 Msa0486690:CDS
GCTGAAGAATCTAAGGTTAG+AGG 0.403747 3_4:-4733680 Msa0486690:CDS
CTGTTCGGCTGAAGAATCTA+AGG 0.404534 3_4:-4733687 Msa0486690:CDS
TGCTTCTTCCAATGCAAGCT+TGG 0.405983 3_4:+4733538 None:intergenic
ACTGTTACTTTGGAGCTTGA+TGG 0.406756 3_4:-4733899 Msa0486690:CDS
GAAAGAACATTCTGAGTTGA+AGG 0.406873 3_4:-4733786 Msa0486690:CDS
TTTGAAGAATCACCTTTGTA+AGG 0.408459 3_4:-4737596 Msa0486690:intron
AGCTGACACTCTTGCATTCG+AGG 0.408737 3_4:+4734270 None:intergenic
CCCAACTGTGGATTCCAATT+CGG 0.409056 3_4:+4733754 None:intergenic
GTCTGAGCTCGAAGCCTGTT+CGG 0.418955 3_4:-4733702 Msa0486690:CDS
TGCGGCTCTGCATACAGAAA+TGG 0.431425 3_4:-4733957 Msa0486690:CDS
AAAATCCGGCAAACTGCTAC+TGG 0.432590 3_4:-4736495 Msa0486690:CDS
AAAAGAAATTTCAGCTGTAA+AGG 0.450558 3_4:-4734182 Msa0486690:CDS
AAGCTCTTGTGGAGCTTGAA+AGG 0.450937 3_4:-4734537 Msa0486690:CDS
GTGTCAATCTCTCCAACCTC+TGG 0.455117 3_4:+4736450 None:intergenic
GCAAACAAAGCTAGCATATG+TGG 0.459076 3_4:-4734149 Msa0486690:CDS
AGGGTGAGCTTCGAAGGTGG+CGG 0.468730 3_4:-4733142 Msa0486690:CDS
AGCAGCAAAGAAAGCGGTTG+AGG 0.474306 3_4:-4733162 Msa0486690:CDS
GATGATTTGTGTGTAGTTGA+GGG 0.474992 3_4:-4732815 Msa0486690:three_prime_UTR
TCCAATGTTGTACGAGGAGG+TGG 0.492938 3_4:+4733011 None:intergenic
AAACAAAAGATCGTCTGACT+TGG 0.493337 3_4:-4733933 Msa0486690:CDS
TACATGAAGTTGCGTCTCCT+TGG 0.494303 3_4:+4734621 None:intergenic
AGCTCTTGTGGAGCTTGAAA+GGG 0.495752 3_4:-4734536 Msa0486690:CDS
AGATATGAAAACTGCAACAC+AGG 0.498887 3_4:-4733213 Msa0486690:CDS
CGAAACTGAGGAAGCACGGC+GGG 0.499299 3_4:-4733615 Msa0486690:CDS
TGATATTAAGCTTTCATGAC+TGG 0.499587 3_4:-4732633 Msa0486690:three_prime_UTR
AGAAGCTGAAAATGCAATGA+AGG 0.500269 3_4:-4734233 Msa0486690:CDS
AAAACTTATTACTGAATCTA+GGG 0.504876 3_4:-4734479 Msa0486690:CDS
AGCTTCACAACAAACTATAC+AGG 0.508704 3_4:+4732864 None:intergenic
AAAAGCAATATTGTTGAGGA+TGG 0.511312 3_4:-4732915 Msa0486690:CDS
AGAAAACACTCTTAGAAGCT+TGG 0.512858 3_4:-4733843 Msa0486690:CDS
GCATCTACATCGTCAGAATC+CGG 0.512989 3_4:-4733407 Msa0486690:CDS
CACGAGACCTATGTGTGAAA+GGG 0.513018 3_4:-4732595 Msa0486690:three_prime_UTR
CGGTTGAGGGTGAGCTTCGA+AGG 0.513525 3_4:-4733148 Msa0486690:CDS
TAAATTAGCTGACATGAAAG+TGG 0.513758 3_4:-4733321 Msa0486690:CDS
AGATATGAGAGTGAGTAATC+AGG 0.515549 3_4:+4737784 None:intergenic
GTGTTTGAAAATGGAAAAGC+TGG 0.518968 3_4:+4737718 None:intergenic
GGGTGAGCTTCGAAGGTGGC+GGG 0.519859 3_4:-4733141 Msa0486690:CDS
TACTAAGGCTCAAGCTCTTG+TGG 0.520283 3_4:-4734548 Msa0486690:CDS
TCCGAATTGGAATCCACAGT+TGG 0.526090 3_4:-4733755 Msa0486690:CDS
AAAGAACGCTGAAACTACTA+AGG 0.527676 3_4:-4734563 Msa0486690:CDS
CACACATAGGTCTCGTGAAA+GGG 0.527839 3_4:+4732601 None:intergenic
CAAAAGTACGGTGACTCTGA+TGG 0.536667 3_4:-4734412 Msa0486690:CDS
TGATGATTTGTGTGTAGTTG+AGG 0.538467 3_4:-4732816 Msa0486690:three_prime_UTR
AACAGACTGAAAAGGTGGGC+TGG 0.541022 3_4:+4736428 None:intergenic
CCGAATTGGAATCCACAGTT+GGG 0.544037 3_4:-4733754 Msa0486690:CDS
TCACGAGACCTATGTGTGAA+AGG 0.548333 3_4:-4732596 Msa0486690:three_prime_UTR
AGATCTGAGGAAAACCCGTC+AGG 0.549936 3_4:-4734305 Msa0486690:CDS
CCCAGTCTAAAACCAGAGGT+TGG 0.551359 3_4:-4736462 Msa0486690:CDS
TGAAGCTACCAAGCTTGCAT+TGG 0.554079 3_4:-4733546 Msa0486690:CDS
CGATATTGTCATTGCAGCAC+CGG 0.554335 3_4:+4733388 None:intergenic
ATCACAGCAACAGCAAGCAT+TGG 0.557927 3_4:-4734125 Msa0486690:CDS
GGATGAATCGTATTCCTGAC+GGG 0.561805 3_4:+4734291 None:intergenic
GCAGCAAAGAAAGCGGTTGA+GGG 0.562121 3_4:-4733161 Msa0486690:CDS
TATCTCTCCCTTTCACACAT+AGG 0.564728 3_4:+4732588 None:intergenic
GGTGACTCTGATGGAGCAAA+CGG 0.565178 3_4:-4734403 Msa0486690:CDS
TCCACCTCCTCGTACAACAT+TGG 0.565733 3_4:-4733012 Msa0486690:CDS
GCAGCTTTAACAGACTGAAA+AGG 0.569244 3_4:+4736420 None:intergenic
TCACACATAGGTCTCGTGAA+AGG 0.574248 3_4:+4732600 None:intergenic
AAAGTTGGAGGCAACTCAGA+AGG 0.575379 3_4:-4733243 Msa0486690:CDS
GAAGAAAAGCAATATTGTTG+AGG 0.577100 3_4:-4732919 Msa0486690:CDS
AGTGGATGCTGCGAAAGCAC+AGG 0.579774 3_4:-4733303 Msa0486690:CDS
ATATTAGTGGTATCTTTCAA+AGG 0.583937 3_4:-4732941 Msa0486690:CDS
AGGAGTTCGAGTCTCTAAAA+CGG 0.584086 3_4:-4733361 Msa0486690:CDS
GCTGTGTCTCTATTTGGTGA+AGG 0.587275 3_4:-4736399 Msa0486690:CDS
AGTCAGGCAAAACAAAAGTA+CGG 0.587853 3_4:-4734424 Msa0486690:CDS
GCTTTAACAGACTGAAAAGG+TGG 0.589140 3_4:+4736423 None:intergenic
AGGATGAATCGTATTCCTGA+CGG 0.591780 3_4:+4734290 None:intergenic
AGTTAGAAAATGCAGTTCAA+AGG 0.592541 3_4:-4734366 Msa0486690:CDS
AAGCGGCAGAAGCTGCAGCT+CGG 0.596772 3_4:-4733103 Msa0486690:CDS
AGCACAGGTAGAAGCTGTGA+AGG 0.598567 3_4:-4733288 Msa0486690:CDS
TAAGGTTAGAGGTGCATCTG+AGG 0.604601 3_4:-4733669 Msa0486690:CDS
CGAGACAATGAATGAAATTG+CGG 0.608177 3_4:-4733975 Msa0486690:CDS
GCCAAAAGCTTATTCTGCTG+AGG 0.610112 3_4:-4736343 Msa0486690:intron
AGATTACAGTGCTAACTGAA+AGG 0.611910 3_4:-4733445 Msa0486690:CDS
AACTATACAGGATTCTCACC+AGG 0.615709 3_4:+4732876 None:intergenic
AGTGAAAGCATTCTTGCGGT+GGG 0.623831 3_4:-4732557 None:intergenic
CTCTCCCAGTCTAAAACCAG+AGG 0.624022 3_4:-4736466 Msa0486690:CDS
GATTTAGATCTAAGATACAA+TGG 0.626073 3_4:-4736523 Msa0486690:exon
TTGAGGGTGAGCTTCGAAGG+TGG 0.626759 3_4:-4733145 Msa0486690:CDS
GTCTCTAAAACGGAAAGTCG+AGG 0.629664 3_4:-4733351 Msa0486690:CDS
TGTTAATGAAGTGTGCTGGA+AGG 0.629758 3_4:-4732778 Msa0486690:three_prime_UTR
CATCCGAAACTGAGGAAGCA+CGG 0.630067 3_4:-4733619 Msa0486690:CDS
TGGAGCTTGAAAGGGCCCAA+AGG 0.633150 3_4:-4734528 Msa0486690:CDS
CTTGGTAGAGACTCTGAAGG+TGG 0.634968 3_4:-4733825 Msa0486690:CDS
TTCACTTCCAATGTTGTACG+AGG 0.636771 3_4:+4733005 None:intergenic
AAGTGAAAGCATTCTTGCGG+TGG 0.639325 3_4:-4732558 Msa0486690:three_prime_UTR
TGCTGCAATGACAATATCGA+CGG 0.647577 3_4:-4733384 Msa0486690:CDS
TCAGTTAACATCCGAAACTG+AGG 0.648666 3_4:-4733627 Msa0486690:CDS
ACTTCCAATGTTGTACGAGG+AGG 0.662570 3_4:+4733008 None:intergenic
CTTTAACAGACTGAAAAGGT+GGG 0.663688 3_4:+4736424 None:intergenic
TGTGAAGGCTAGCGAAAACG+AGG 0.665471 3_4:-4733273 Msa0486690:CDS
TATGAAAACTGCAACACAGG+AGG 0.667826 3_4:-4733210 Msa0486690:CDS
GGCTGAAGCAGCAAAGAAAG+CGG 0.667928 3_4:-4733168 Msa0486690:CDS
GACATGCAGATTCCCAACTG+TGG 0.670611 3_4:+4733742 None:intergenic
ATGCTGCTAAGCAAGATCTG+AGG 0.688485 3_4:-4734318 Msa0486690:CDS
AAGCTTGGTAGAGACTCTGA+AGG 0.694026 3_4:-4733828 Msa0486690:CDS
TGCAATGACAATATCGACGG+AGG 0.702839 3_4:-4733381 Msa0486690:CDS
GTAAAGTGAAAGCATTCTTG+CGG 0.711012 3_4:-4732561 Msa0486690:three_prime_UTR
CCGAAACTGAGGAAGCACGG+CGG 0.740064 3_4:-4733616 Msa0486690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTGTTTACATTTTTT+GGG - chr3_4:4733233-4733252 Msa0486690:CDS 10.0%
!!! TTTGAATTTATTTTATCTTT+TGG + chr3_4:4734212-4734231 None:intergenic 10.0%
!! TATAAATATATGCTTATAAT+AGG - chr3_4:4734375-4734394 Msa0486690:CDS 10.0%
!! ATAAATATATGCTTATAATA+GGG - chr3_4:4734376-4734395 Msa0486690:CDS 10.0%
!!! TGTTATTTCTATTAAAAAAT+GGG + chr3_4:4734847-4734866 None:intergenic 10.0%
!! AAAAAATATTTACCTTACAA+AGG + chr3_4:4732759-4732778 None:intergenic 15.0%
!!! GTAATATTGTTTACATTTTT+TGG - chr3_4:4733232-4733251 Msa0486690:CDS 15.0%
!!! TATTATTGTGTAGTTTTTAA+AGG - chr3_4:4733383-4733402 Msa0486690:CDS 15.0%
!!! ATTATTGTGTAGTTTTTAAA+GGG - chr3_4:4733384-4733403 Msa0486690:CDS 15.0%
!!! GTTATTTCTATTAAAAAATG+GGG + chr3_4:4734846-4734865 None:intergenic 15.0%
!!! CTGTTATTTCTATTAAAAAA+TGG + chr3_4:4734848-4734867 None:intergenic 15.0%
!!! CTTTATTAGTAATAACTTTT+CGG - chr3_4:4734959-4734978 Msa0486690:intron 15.0%
!! AAAGATATTAAATCTGTATT+TGG - chr3_4:4735200-4735219 Msa0486690:intron 15.0%
!! AAAAAAATTGATACATGTTA+TGG + chr3_4:4735469-4735488 None:intergenic 15.0%
!!! AAAAAATCAAAACTTTTAAG+AGG + chr3_4:4735582-4735601 None:intergenic 15.0%
!!! ATAGATTTAAATTTTTCTAC+TGG + chr3_4:4737656-4737675 None:intergenic 15.0%
!! GTAGAAAAATTTAAATCTAT+TGG - chr3_4:4737656-4737675 Msa0486690:five_prime_UTR 15.0%
!!! CAACTTAATATTTTAACCAA+AGG + chr3_4:4733172-4733191 None:intergenic 20.0%
!! ATATAAAAGAAGCTATTGAT+AGG - chr3_4:4733458-4733477 Msa0486690:CDS 20.0%
!!! TAATCTTTTCAATTGGAATT+TGG + chr3_4:4733637-4733656 None:intergenic 20.0%
!!! CAACAAATAATCTTTTCAAT+TGG + chr3_4:4733644-4733663 None:intergenic 20.0%
!! TATCTTAGATCTAAATCTTA+AGG + chr3_4:4733814-4733833 None:intergenic 20.0%
!! TGTAAAACTAAAAACAACAA+TGG - chr3_4:4734074-4734093 Msa0486690:CDS 20.0%
!! AAACATATCCTAAAATTTAC+AGG + chr3_4:4734114-4734133 None:intergenic 20.0%
!!! TGTAAATTTTAGGATATGTT+TGG - chr3_4:4734113-4734132 Msa0486690:CDS 20.0%
!!! TTTTTCTATAGAAAGTGAAA+AGG + chr3_4:4734520-4734539 None:intergenic 20.0%
!! TGAATATCAAATTGAAGAAT+AGG + chr3_4:4734901-4734920 None:intergenic 20.0%
!! TGCAATAAAGTTCTATTATA+AGG + chr3_4:4735002-4735021 None:intergenic 20.0%
!!! ACTTAATGTTGTTATTTACA+TGG + chr3_4:4735325-4735344 None:intergenic 20.0%
!! AACAACATTAAGTAAAACTA+AGG - chr3_4:4735332-4735351 Msa0486690:intron 20.0%
!! TAAAACTTATTACTGAATCT+AGG - chr3_4:4735860-4735879 Msa0486690:intron 20.0%
!! AAAACTTATTACTGAATCTA+GGG - chr3_4:4735861-4735880 Msa0486690:intron 20.0%
!! TCGAAGAAAATTAATATTAG+TGG - chr3_4:4737386-4737405 Msa0486690:intron 20.0%
!!! TTTATTGCTTTTGAGAATCT+GGG - chr3_4:4732834-4732853 Msa0486690:three_prime_UTR 25.0%
!! AGTATTTTGTGTTTTCATGA+TGG - chr3_4:4732863-4732882 Msa0486690:exon 25.0%
!! GTATTTTGTGTTTTCATGAT+GGG - chr3_4:4732864-4732883 Msa0486690:exon 25.0%
! AGATACACATAAAAAGTCAA+GGG + chr3_4:4733058-4733077 None:intergenic 25.0%
! TTTCATACTGAAAAAACCTT+TGG - chr3_4:4733153-4733172 Msa0486690:CDS 25.0%
! TCCTGAAAATTCTAATGTAT+TGG - chr3_4:4733285-4733304 Msa0486690:CDS 25.0%
! CCTGAAAATTCTAATGTATT+GGG - chr3_4:4733286-4733305 Msa0486690:CDS 25.0%
! GTTTAACAAGCATTATTAGT+TGG - chr3_4:4733337-4733356 Msa0486690:CDS 25.0%
!!! AGTTTTTAAAGGGTCTTAAT+TGG - chr3_4:4733394-4733413 Msa0486690:CDS 25.0%
!!! TCTTCTACTATGTTTTTAAC+AGG - chr3_4:4733775-4733794 Msa0486690:CDS 25.0%
!! GATTTAGATCTAAGATACAA+TGG - chr3_4:4733817-4733836 Msa0486690:CDS 25.0%
!!! TTAGTTTTACAACATCACAA+AGG + chr3_4:4734065-4734084 None:intergenic 25.0%
! CAAATAAGTCAATCCAAATT+AGG - chr3_4:4734288-4734307 Msa0486690:CDS 25.0%
! AGACAATATAAGACCTAATT+TGG + chr3_4:4734304-4734323 None:intergenic 25.0%
! AGGAAATCAAAAAAATTTCC+AGG + chr3_4:4734435-4734454 None:intergenic 25.0%
! TTTCTATAGAAAAACTGCAA+CGG - chr3_4:4734526-4734545 Msa0486690:CDS 25.0%
! AACATAAAAGAATGTTGACA+TGG + chr3_4:4734704-4734723 None:intergenic 25.0%
! AACATATGAAAAGAAACACA+AGG + chr3_4:4734875-4734894 None:intergenic 25.0%
!! GATTATCTGAAGTTGTAATT+AGG - chr3_4:4735054-4735073 Msa0486690:intron 25.0%
! GTACAGAGTATATACAATTT+AGG + chr3_4:4735106-4735125 None:intergenic 25.0%
!!! ATCTTGTTTCTAATTGTCAT+AGG + chr3_4:4735149-4735168 None:intergenic 25.0%
! AATTAGAAACAAGATTTACG+AGG - chr3_4:4735154-4735173 Msa0486690:intron 25.0%
! ATCTGTATTTGGTTATAAGA+TGG - chr3_4:4735211-4735230 Msa0486690:intron 25.0%
! ATGAGATATTCCTACTTAAA+TGG + chr3_4:4735247-4735266 None:intergenic 25.0%
! ATTTAAGTAGGAATATCTCA+TGG - chr3_4:4735246-4735265 Msa0486690:intron 25.0%
!!! AATGTTGTTATTTACATGGA+AGG + chr3_4:4735321-4735340 None:intergenic 25.0%
! CTTGTACAAATCTTTGATAA+TGG + chr3_4:4735418-4735437 None:intergenic 25.0%
! TTATCAAAGATTTGTACAAG+TGG - chr3_4:4735418-4735437 Msa0486690:intron 25.0%
! AATAAGATTACATAGTTCAG+TGG + chr3_4:4735606-4735625 None:intergenic 25.0%
!! ATTTTCTCTTTCTCATTTTG+TGG - chr3_4:4735662-4735681 Msa0486690:intron 25.0%
! AAAAGAGCTAAACAAGTTAA+AGG - chr3_4:4735747-4735766 Msa0486690:intron 25.0%
! AAAAGAAATTTCAGCTGTAA+AGG - chr3_4:4736158-4736177 Msa0486690:intron 25.0%
!! TTTCTTTTTGGATTGTTCAA+GGG + chr3_4:4736283-4736302 None:intergenic 25.0%
!! ATTTCTTTTTGGATTGTTCA+AGG + chr3_4:4736284-4736303 None:intergenic 25.0%
!! CAAAGCAAGTAATTTCTTTT+TGG + chr3_4:4736295-4736314 None:intergenic 25.0%
!!! GAAATTACTTGCTTTGAAAA+AGG - chr3_4:4736299-4736318 Msa0486690:intron 25.0%
!! TTCAAGACTTTTTGTGATTT+CGG + chr3_4:4736334-4736353 None:intergenic 25.0%
! TTTCATGTCAGCTAATTTAT+CGG + chr3_4:4737018-4737037 None:intergenic 25.0%
! ATATTAGTGGTATCTTTCAA+AGG - chr3_4:4737399-4737418 Msa0486690:intron 25.0%
!! ATTGTATGGTGTTAATAGTT+TGG - chr3_4:4737593-4737612 Msa0486690:intron 25.0%
!! AATAGTTTGGTGACAAATTA+TGG - chr3_4:4737606-4737625 Msa0486690:five_prime_UTR 25.0%
!! ATAGTTTGGTGACAAATTAT+GGG - chr3_4:4737607-4737626 Msa0486690:five_prime_UTR 25.0%
GATAGAGATGTGTTTGAAAA+TGG + chr3_4:4732634-4732653 None:intergenic 30.0%
TTTGAAGAATCACCTTTGTA+AGG - chr3_4:4732744-4732763 Msa0486690:three_prime_UTR 30.0%
!! CTTTATTGCTTTTGAGAATC+TGG - chr3_4:4732833-4732852 Msa0486690:three_prime_UTR 30.0%
AAAGGAACCATGATAAAGTA+AGG + chr3_4:4732917-4732936 None:intergenic 30.0%
GAAACCACAAAACAAAACAA+AGG + chr3_4:4732935-4732954 None:intergenic 30.0%
! TCATTTTCATGTTCTGTTTG+CGG - chr3_4:4732953-4732972 Msa0486690:CDS 30.0%
!!! TCTGTCGTTTTAAACATACT+TGG - chr3_4:4732991-4733010 Msa0486690:CDS 30.0%
CAGATACACATAAAAAGTCA+AGG + chr3_4:4733059-4733078 None:intergenic 30.0%
! TGGTGTTCTTTTCATTTTGA+AGG - chr3_4:4733125-4733144 Msa0486690:CDS 30.0%
! CCCAATACATTAGAATTTTC+AGG + chr3_4:4733289-4733308 None:intergenic 30.0%
!! TTTTAAAGGGTCTTAATTGG+TGG - chr3_4:4733397-4733416 Msa0486690:CDS 30.0%
CATACAATCTGTAATACTAC+TGG + chr3_4:4733547-4733566 None:intergenic 30.0%
CAGTAGTATTACAGATTGTA+TGG - chr3_4:4733545-4733564 Msa0486690:CDS 30.0%
AAAGTCAAGATAGACATGAT+TGG + chr3_4:4733581-4733600 None:intergenic 30.0%
!! CTACTATGTTTTTAACAGGT+TGG - chr3_4:4733779-4733798 Msa0486690:CDS 30.0%
!!! AATAAGCTTTTGGCTTCTTA+AGG + chr3_4:4733991-4734010 None:intergenic 30.0%
! CAGTGTATCCTGTAAATTTT+AGG - chr3_4:4734103-4734122 Msa0486690:CDS 30.0%
!!! GGTGATTTATTGATTTTTCC+TGG - chr3_4:4734414-4734433 Msa0486690:CDS 30.0%
! CATTCTTTTATGTTTCAGCA+TGG - chr3_4:4734710-4734729 Msa0486690:intron 30.0%
! AAAAAATGGGGTATTTCAAC+AGG + chr3_4:4734834-4734853 None:intergenic 30.0%
GAATATCTCATGGATATGAA+GGG - chr3_4:4735256-4735275 Msa0486690:intron 30.0%
TACATTCTAAGCTTGAAAGA+AGG + chr3_4:4735643-4735662 None:intergenic 30.0%
! ATTTTCTAACTCTTCTTTCC+AGG + chr3_4:4735965-4735984 None:intergenic 30.0%
AGTTAGAAAATGCAGTTCAA+AGG - chr3_4:4735974-4735993 Msa0486690:intron 30.0%
! TCAAGACTTTTTGTGATTTC+GGG + chr3_4:4736333-4736352 None:intergenic 30.0%
GAAAAAACTGAAAGAAGCAA+CGG - chr3_4:4736827-4736846 Msa0486690:intron 30.0%
TAAATTAGCTGACATGAAAG+TGG - chr3_4:4737019-4737038 Msa0486690:intron 30.0%
!!! AAACGAGGTTTTGAAAAAGT+TGG - chr3_4:4737082-4737101 Msa0486690:intron 30.0%
! TTTTGAATCCTATAATGCTG+AGG + chr3_4:4737299-4737318 None:intergenic 30.0%
GAAGAAAAGCAATATTGTTG+AGG - chr3_4:4737421-4737440 Msa0486690:intron 30.0%
AAAAGCAATATTGTTGAGGA+TGG - chr3_4:4737425-4737444 Msa0486690:intron 30.0%
! ATTTTGTTAATGAAGTGTGC+TGG - chr3_4:4737558-4737577 Msa0486690:intron 30.0%
!!! GGAAGGAAAGTTTTATTGTA+TGG - chr3_4:4737579-4737598 Msa0486690:intron 30.0%
GGACATGCATTATATGTAAA+TGG - chr3_4:4737628-4737647 Msa0486690:five_prime_UTR 30.0%
TGATATTAAGCTTTCATGAC+TGG - chr3_4:4737707-4737726 Msa0486690:five_prime_UTR 30.0%
GTGTTTGAAAATGGAAAAGC+TGG + chr3_4:4732625-4732644 None:intergenic 35.0%
GTGATTCTTCAAAACTCTTC+AGG + chr3_4:4732737-4732756 None:intergenic 35.0%
!! GTTGCTGATTCAGTTAAAGA+TGG - chr3_4:4732807-4732826 Msa0486690:three_prime_UTR 35.0%
TGAGCTACCTTACTTTATCA+TGG - chr3_4:4732907-4732926 Msa0486690:CDS 35.0%
!!! GGTTCCTTTGTTTTGTTTTG+TGG - chr3_4:4732928-4732947 Msa0486690:CDS 35.0%
TCTTAATTGGTGGAAGATTG+TGG - chr3_4:4733407-4733426 Msa0486690:CDS 35.0%
AAGATAGACATGATTGGAAG+AGG + chr3_4:4733575-4733594 None:intergenic 35.0%
ATACAATGGTCGCAAAAATC+CGG - chr3_4:4733831-4733850 Msa0486690:CDS 35.0%
CTTTAACAGACTGAAAAGGT+GGG + chr3_4:4733919-4733938 None:intergenic 35.0%
TTCACAAGTTATCTTAGCGT+AGG - chr3_4:4734259-4734278 Msa0486690:CDS 35.0%
!! TTCTGGAACTGACACTATAT+CGG + chr3_4:4734462-4734481 None:intergenic 35.0%
AGTGAAAAGGCAAGATGTAA+GGG + chr3_4:4734507-4734526 None:intergenic 35.0%
AAGTGAAAAGGCAAGATGTA+AGG + chr3_4:4734508-4734527 None:intergenic 35.0%
GTTTGCATAACATTGAAGTC+TGG + chr3_4:4734571-4734590 None:intergenic 35.0%
! AAAAGGAGAGTATGAGTTAG+AGG + chr3_4:4734671-4734690 None:intergenic 35.0%
ACACAGATACAAAGAAGACA+TGG + chr3_4:4734765-4734784 None:intergenic 35.0%
ATGTCTTCTTTGTATCTGTG+TGG - chr3_4:4734764-4734783 Msa0486690:intron 35.0%
! ATCTGAAGTTGTAATTAGGC+TGG - chr3_4:4735058-4735077 Msa0486690:intron 35.0%
! TGTGATGTTGCCATTTAAGT+AGG - chr3_4:4735234-4735253 Msa0486690:intron 35.0%
GGAATATCTCATGGATATGA+AGG - chr3_4:4735255-4735274 Msa0486690:intron 35.0%
GTTCTTGAATCGAATGAAAC+AGG + chr3_4:4735287-4735306 None:intergenic 35.0%
AAAGATTTGTACAAGTGGTG+AGG - chr3_4:4735423-4735442 Msa0486690:intron 35.0%
AAAGAACGCTGAAACTACTA+AGG - chr3_4:4735777-4735796 Msa0486690:intron 35.0%
AGTCAGGCAAAACAAAAGTA+CGG - chr3_4:4735916-4735935 Msa0486690:intron 35.0%
AGAAGCTGAAAATGCAATGA+AGG - chr3_4:4736107-4736126 Msa0486690:intron 35.0%
AAAAAGTCTTGAAGCACAGT+TGG - chr3_4:4736341-4736360 Msa0486690:intron 35.0%
CGCAATTTCATTCATTGTCT+CGG + chr3_4:4736367-4736386 None:intergenic 35.0%
CGAGACAATGAATGAAATTG+CGG - chr3_4:4736365-4736384 Msa0486690:CDS 35.0%
AAACAAAAGATCGTCTGACT+TGG - chr3_4:4736407-4736426 Msa0486690:CDS 35.0%
! CTCTGTGAAAACTGTTACTT+TGG - chr3_4:4736431-4736450 Msa0486690:CDS 35.0%
AGAAAACACTCTTAGAAGCT+TGG - chr3_4:4736497-4736516 Msa0486690:CDS 35.0%
AGATTACAGTGCTAACTGAA+AGG - chr3_4:4736895-4736914 Msa0486690:intron 35.0%
AGATATGAAAACTGCAACAC+AGG - chr3_4:4737127-4737146 Msa0486690:intron 35.0%
TTCTGATGACATCTGTGTTT+CGG + chr3_4:4737270-4737289 None:intergenic 35.0%
AATCATCTCCTCAGCATTAT+AGG - chr3_4:4737288-4737307 Msa0486690:intron 35.0%
AGCTTCACAACAAACTATAC+AGG + chr3_4:4737479-4737498 None:intergenic 35.0%
! TGATGATTTGTGTGTAGTTG+AGG - chr3_4:4737524-4737543 Msa0486690:intron 35.0%
! GATGATTTGTGTGTAGTTGA+GGG - chr3_4:4737525-4737544 Msa0486690:intron 35.0%
!! GTAAAGTGAAAGCATTCTTG+CGG - chr3_4:4737779-4737798 Msa0486690:five_prime_UTR 35.0%
!! CTGTAATACTACTGGCTCTT+AGG + chr3_4:4733539-4733558 None:intergenic 40.0%
GCTTTAACAGACTGAAAAGG+TGG + chr3_4:4733920-4733939 None:intergenic 40.0%
! GCAGCTTTAACAGACTGAAA+AGG + chr3_4:4733923-4733942 None:intergenic 40.0%
AAAGCTGCTGTGTCTCTATT+TGG - chr3_4:4733935-4733954 Msa0486690:CDS 40.0%
!!! TTTGGTGAAGGTGCTTTTTC+TGG - chr3_4:4733953-4733972 Msa0486690:CDS 40.0%
!!! TTGGTGAAGGTGCTTTTTCT+GGG - chr3_4:4733954-4733973 Msa0486690:CDS 40.0%
! ACCTCAGCAGAATAAGCTTT+TGG + chr3_4:4734001-4734020 None:intergenic 40.0%
ACTGACACTATATCGGTATC+AGG + chr3_4:4734455-4734474 None:intergenic 40.0%
! GTTAGGCAAGTGTGGTTTTT+CGG + chr3_4:4734609-4734628 None:intergenic 40.0%
GAAAGAAGAAAGAGCGAGTT+AGG + chr3_4:4734626-4734645 None:intergenic 40.0%
GGAGTGAGAATCTATGTAGA+AGG + chr3_4:4734650-4734669 None:intergenic 40.0%
AATGTTGACATGGCAGTGAA+TGG + chr3_4:4734694-4734713 None:intergenic 40.0%
CAGATACAAAGAAGACATGG+TGG + chr3_4:4734762-4734781 None:intergenic 40.0%
GTTGTAATTAGGCTGGACTT+TGG - chr3_4:4735065-4735084 Msa0486690:intron 40.0%
AGGTGTCTCAACAATGTTCT+TGG - chr3_4:4735174-4735193 Msa0486690:intron 40.0%
! GTTCGTTCACTAGAGAGTTT+TGG - chr3_4:4735696-4735715 Msa0486690:intron 40.0%
! CAAATCATCGACTGTCCTTT+GGG + chr3_4:4735830-4735849 None:intergenic 40.0%
! TCAAATCATCGACTGTCCTT+TGG + chr3_4:4735831-4735850 None:intergenic 40.0%
AACAGAAGCTGCAAAAAGTC+AGG - chr3_4:4735900-4735919 Msa0486690:intron 40.0%
AGGATGAATCGTATTCCTGA+CGG + chr3_4:4736053-4736072 None:intergenic 40.0%
GCAAACAAAGCTAGCATATG+TGG - chr3_4:4736191-4736210 Msa0486690:intron 40.0%
!! ACTGTTACTTTGGAGCTTGA+TGG - chr3_4:4736441-4736460 Msa0486690:CDS 40.0%
GAAGGAAAAAGAGTCCGAAT+TGG - chr3_4:4736572-4736591 Msa0486690:intron 40.0%
! GCTGAAGAATCTAAGGTTAG+AGG - chr3_4:4736660-4736679 Msa0486690:intron 40.0%
TCAGTTAACATCCGAAACTG+AGG - chr3_4:4736713-4736732 Msa0486690:intron 40.0%
TGCTGCAATGACAATATCGA+CGG - chr3_4:4736956-4736975 Msa0486690:intron 40.0%
! AGGAGTTCGAGTCTCTAAAA+CGG - chr3_4:4736979-4736998 Msa0486690:intron 40.0%
!!! CGAGGTTTTGAAAAAGTTGG+AGG - chr3_4:4737085-4737104 Msa0486690:intron 40.0%
TATGAAAACTGCAACACAGG+AGG - chr3_4:4737130-4737149 Msa0486690:intron 40.0%
TTCACTTCCAATGTTGTACG+AGG + chr3_4:4737338-4737357 None:intergenic 40.0%
AACTATACAGGATTCTCACC+AGG + chr3_4:4737467-4737486 None:intergenic 40.0%
TGTTAATGAAGTGTGCTGGA+AGG - chr3_4:4737562-4737581 Msa0486690:intron 40.0%
AGCTTTCATGACTGGTAGAT+TGG - chr3_4:4737715-4737734 Msa0486690:five_prime_UTR 40.0%
TATCTCTCCCTTTCACACAT+AGG + chr3_4:4737755-4737774 None:intergenic 40.0%
! GAGAGAGAGAGAGATGGTTT+TGG + chr3_4:4732668-4732687 None:intergenic 45.0%
!! GCTTTTGAGAATCTGGGTTG+TGG - chr3_4:4732840-4732859 Msa0486690:three_prime_UTR 45.0%
GAGCTTTCAGCTGTGCAAAT+AGG + chr3_4:4733267-4733286 None:intergenic 45.0%
GGTGGAAGATTGTGGAATCA+TGG - chr3_4:4733415-4733434 Msa0486690:CDS 45.0%
AAAATCCGGCAAACTGCTAC+TGG - chr3_4:4733845-4733864 Msa0486690:CDS 45.0%
!!! TCTGGTTTTAGACTGGGAGA+GGG + chr3_4:4733875-4733894 None:intergenic 45.0%
!!! CCAACCTCTGGTTTTAGACT+GGG + chr3_4:4733881-4733900 None:intergenic 45.0%
!!! TCCAACCTCTGGTTTTAGAC+TGG + chr3_4:4733882-4733901 None:intergenic 45.0%
! GCTGTGTCTCTATTTGGTGA+AGG - chr3_4:4733941-4733960 Msa0486690:CDS 45.0%
!!! TGGTGAAGGTGCTTTTTCTG+GGG - chr3_4:4733955-4733974 Msa0486690:CDS 45.0%
!!! GCTTTTGGCTTCTTAAGGAC+AGG + chr3_4:4733986-4734005 None:intergenic 45.0%
GCCAAAAGCTTATTCTGCTG+AGG - chr3_4:4733997-4734016 Msa0486690:CDS 45.0%
TATTAGCAGAGTCAGAGTGC+TGG + chr3_4:4734355-4734374 None:intergenic 45.0%
! ATAGGGCTAGAAAGTGCAGA+CGG - chr3_4:4734393-4734412 Msa0486690:CDS 45.0%
! TTGTGTGCAGAGCATTCTTC+TGG + chr3_4:4734479-4734498 None:intergenic 45.0%
ATGCAAACTTCTTTGCCCGA+AGG - chr3_4:4734583-4734602 Msa0486690:CDS 45.0%
!! AAGTGTGGTTTTTCGGCCTT+CGG + chr3_4:4734602-4734621 None:intergenic 45.0%
GACATGGCAGTGAATGGAAA+AGG + chr3_4:4734688-4734707 None:intergenic 45.0%
!! TCACTAGAGAGTTTTGGCCA+AGG - chr3_4:4735702-4735721 Msa0486690:intron 45.0%
TACATGAAGTTGCGTCTCCT+TGG + chr3_4:4735722-4735741 None:intergenic 45.0%
TACTAAGGCTCAAGCTCTTG+TGG - chr3_4:4735792-4735811 Msa0486690:intron 45.0%
AAGCTCTTGTGGAGCTTGAA+AGG - chr3_4:4735803-4735822 Msa0486690:intron 45.0%
AGCTCTTGTGGAGCTTGAAA+GGG - chr3_4:4735804-4735823 Msa0486690:intron 45.0%
! CAAAAGTACGGTGACTCTGA+TGG - chr3_4:4735928-4735947 Msa0486690:intron 45.0%
ATGCTGCTAAGCAAGATCTG+AGG - chr3_4:4736022-4736041 Msa0486690:intron 45.0%
GGATGAATCGTATTCCTGAC+GGG + chr3_4:4736052-4736071 None:intergenic 45.0%
ATCACAGCAACAGCAAGCAT+TGG - chr3_4:4736215-4736234 Msa0486690:intron 45.0%
AAGCTTGGTAGAGACTCTGA+AGG - chr3_4:4736512-4736531 Msa0486690:exon 45.0%
TCCGAATTGGAATCCACAGT+TGG - chr3_4:4736585-4736604 Msa0486690:intron 45.0%
CCCAACTGTGGATTCCAATT+CGG + chr3_4:4736589-4736608 None:intergenic 45.0%
CCGAATTGGAATCCACAGTT+GGG - chr3_4:4736586-4736605 Msa0486690:intron 45.0%
CTTAGATTCTTCAGCCGAAC+AGG + chr3_4:4736655-4736674 None:intergenic 45.0%
CTGTTCGGCTGAAGAATCTA+AGG - chr3_4:4736653-4736672 Msa0486690:intron 45.0%
! TAAGGTTAGAGGTGCATCTG+AGG - chr3_4:4736671-4736690 Msa0486690:intron 45.0%
TGAAGCTACCAAGCTTGCAT+TGG - chr3_4:4736794-4736813 Msa0486690:intron 45.0%
TGCTTCTTCCAATGCAAGCT+TGG + chr3_4:4736805-4736824 None:intergenic 45.0%
GCATCTACATCGTCAGAATC+CGG - chr3_4:4736933-4736952 Msa0486690:intron 45.0%
CGATATTGTCATTGCAGCAC+CGG + chr3_4:4736955-4736974 None:intergenic 45.0%
TGCAATGACAATATCGACGG+AGG - chr3_4:4736959-4736978 Msa0486690:intron 45.0%
!! GTCTCTAAAACGGAAAGTCG+AGG - chr3_4:4736989-4737008 Msa0486690:intron 45.0%
AAAGTTGGAGGCAACTCAGA+AGG - chr3_4:4737097-4737116 Msa0486690:intron 45.0%
AACACAGGAGGCCTTGAAAA+AGG - chr3_4:4737142-4737161 Msa0486690:intron 45.0%
!! AGCCATCTCAGCCTTTTTCA+AGG + chr3_4:4737156-4737175 None:intergenic 45.0%
GGAGCGAGAACAGAAAAAAG+CGG - chr3_4:4737220-4737239 Msa0486690:intron 45.0%
ACTTCCAATGTTGTACGAGG+AGG + chr3_4:4737335-4737354 None:intergenic 45.0%
! GGATCTGCTTCTTATTTGCC+TGG - chr3_4:4737446-4737465 Msa0486690:intron 45.0%
CACACATAGGTCTCGTGAAA+GGG + chr3_4:4737742-4737761 None:intergenic 45.0%
TCACACATAGGTCTCGTGAA+AGG + chr3_4:4737743-4737762 None:intergenic 45.0%
TCACGAGACCTATGTGTGAA+AGG - chr3_4:4737744-4737763 Msa0486690:five_prime_UTR 45.0%
CACGAGACCTATGTGTGAAA+GGG - chr3_4:4737745-4737764 Msa0486690:five_prime_UTR 45.0%
!!! AATTTTCTATTTAATATTTT+TGG - chr3_4:4733081-4733100 Msa0486690:CDS 5.0%
!!! ATTTTTATATTTTAATTGTT+TGG - chr3_4:4733105-4733124 Msa0486690:CDS 5.0%
GAGAGAGAGAGAGAGAGAGA+TGG + chr3_4:4732674-4732693 None:intergenic 50.0%
!! CTACTGGCTCTTAGGTTCAC+TGG + chr3_4:4733531-4733550 None:intergenic 50.0%
!!! CTCTGGTTTTAGACTGGGAG+AGG + chr3_4:4733876-4733895 None:intergenic 50.0%
! CTCTCCCAGTCTAAAACCAG+AGG - chr3_4:4733874-4733893 Msa0486690:CDS 50.0%
! CCCAGTCTAAAACCAGAGGT+TGG - chr3_4:4733878-4733897 Msa0486690:CDS 50.0%
GTGTCAATCTCTCCAACCTC+TGG + chr3_4:4733893-4733912 None:intergenic 50.0%
AACAGACTGAAAAGGTGGGC+TGG + chr3_4:4733915-4733934 None:intergenic 50.0%
!! TCAGAGTGCTGGCTTGCAAT+GGG + chr3_4:4734344-4734363 None:intergenic 50.0%
!! AGTGTGGTTTTTCGGCCTTC+GGG + chr3_4:4734601-4734620 None:intergenic 50.0%
AAGAGCGAGTTAGGCAAGTG+TGG + chr3_4:4734617-4734636 None:intergenic 50.0%
GGTGACTCTGATGGAGCAAA+CGG - chr3_4:4735937-4735956 Msa0486690:intron 50.0%
AGATCTGAGGAAAACCCGTC+AGG - chr3_4:4736035-4736054 Msa0486690:intron 50.0%
AGCTGACACTCTTGCATTCG+AGG + chr3_4:4736073-4736092 None:intergenic 50.0%
TGCGGCTCTGCATACAGAAA+TGG - chr3_4:4736383-4736402 Msa0486690:CDS 50.0%
! CTTGGTAGAGACTCTGAAGG+TGG - chr3_4:4736515-4736534 Msa0486690:exon 50.0%
GACATGCAGATTCCCAACTG+TGG + chr3_4:4736601-4736620 None:intergenic 50.0%
CATCCGAAACTGAGGAAGCA+CGG - chr3_4:4736721-4736740 Msa0486690:intron 50.0%
AGCACAGGTAGAAGCTGTGA+AGG - chr3_4:4737052-4737071 Msa0486690:intron 50.0%
TGTGAAGGCTAGCGAAAACG+AGG - chr3_4:4737067-4737086 Msa0486690:intron 50.0%
GGCCTTGAAAAAGGCTGAGA+TGG - chr3_4:4737151-4737170 Msa0486690:intron 50.0%
GGCTGAAGCAGCAAAGAAAG+CGG - chr3_4:4737172-4737191 Msa0486690:intron 50.0%
AGCAGCAAAGAAAGCGGTTG+AGG - chr3_4:4737178-4737197 Msa0486690:intron 50.0%
GCAGCAAAGAAAGCGGTTGA+GGG - chr3_4:4737179-4737198 Msa0486690:intron 50.0%
TCCACCTCCTCGTACAACAT+TGG - chr3_4:4737328-4737347 Msa0486690:intron 50.0%
TCCAATGTTGTACGAGGAGG+TGG + chr3_4:4737332-4737351 None:intergenic 50.0%
GAGAGCCAGTAGCAGTTTGC+CGG + chr3_4:4733853-4733872 None:intergenic 55.0%
!! GTCAGAGTGCTGGCTTGCAA+TGG + chr3_4:4734345-4734364 None:intergenic 55.0%
TGGAGCTTGAAAGGGCCCAA+AGG - chr3_4:4735812-4735831 Msa0486690:intron 55.0%
GTCTGAGCTCGAAGCCTGTT+CGG - chr3_4:4736638-4736657 Msa0486690:intron 55.0%
! AGTGGATGCTGCGAAAGCAC+AGG - chr3_4:4737037-4737056 Msa0486690:intron 55.0%
TTGAGGGTGAGCTTCGAAGG+TGG - chr3_4:4737195-4737214 Msa0486690:intron 55.0%
CTGATGGAGCAAACGGTGCC+TGG - chr3_4:4735944-4735963 Msa0486690:intron 60.0%
CCGCCGTGCTTCCTCAGTTT+CGG + chr3_4:4736727-4736746 None:intergenic 60.0%
! CCGAAACTGAGGAAGCACGG+CGG - chr3_4:4736724-4736743 Msa0486690:intron 60.0%
! CGAAACTGAGGAAGCACGGC+GGG - chr3_4:4736725-4736744 Msa0486690:intron 60.0%
CGGTTGAGGGTGAGCTTCGA+AGG - chr3_4:4737192-4737211 Msa0486690:intron 60.0%
AGGGTGAGCTTCGAAGGTGG+CGG - chr3_4:4737198-4737217 Msa0486690:intron 60.0%
AAGCGGCAGAAGCTGCAGCT+CGG - chr3_4:4737237-4737256 Msa0486690:intron 60.0%
GGGTGAGCTTCGAAGGTGGC+GGG - chr3_4:4737199-4737218 Msa0486690:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 4732558 4737804 4732558 ID=Msa0486690;Name=Msa0486690
chr3_4 mRNA 4732558 4737804 4732558 ID=Msa0486690-mRNA-1;Parent=Msa0486690;Name=Msa0486690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=247|1|1|1|0.5|0.33|3|320|652
chr3_4 exon 4732558 4734653 4732558 ID=Msa0486690-mRNA-1:exon:1828;Parent=Msa0486690-mRNA-1
chr3_4 exon 4736344 4736565 4736344 ID=Msa0486690-mRNA-1:exon:1827;Parent=Msa0486690-mRNA-1
chr3_4 exon 4737597 4737804 4737597 ID=Msa0486690-mRNA-1:exon:1826;Parent=Msa0486690-mRNA-1
chr3_4 five_prime_UTR 4737597 4737804 4737597 ID=Msa0486690-mRNA-1:five_prime_utr;Parent=Msa0486690-mRNA-1
chr3_4 five_prime_UTR 4736527 4736565 4736527 ID=Msa0486690-mRNA-1:five_prime_utr;Parent=Msa0486690-mRNA-1
chr3_4 CDS 4736344 4736526 4736344 ID=Msa0486690-mRNA-1:cds;Parent=Msa0486690-mRNA-1
chr3_4 CDS 4732878 4734653 4732878 ID=Msa0486690-mRNA-1:cds;Parent=Msa0486690-mRNA-1
chr3_4 three_prime_UTR 4732558 4732877 4732558 ID=Msa0486690-mRNA-1:three_prime_utr;Parent=Msa0486690-mRNA-1
Gene Sequence

>Msa0486690

ATGGTCGCAAAAATCCGGCAAACTGCTACTGGCTCTCCCTCTCCCAGTCTAAAACCAGAGGTTGGAGAGATTGACACCAGCCCACCTTTTCAGTCTGTTAAAGCTGCTGTGTCTCTATTTGGTGAAGGTGCTTTTTCTGGGGAAAGACCTGTCCTTAAGAAGCCAAAAGCTTATTCTGCTGAGAGAGTTTTGGCCAAGGAGACGCAACTTCATGTAGCTGAAAAAGAGCTAAACAAGTTAAAGGAACAAGTAAAGAACGCTGAAACTACTAAGGCTCAAGCTCTTGTGGAGCTTGAAAGGGCCCAAAGGACAGTCGATGATTTGACACAGAAGCTAAAACTTATTACTGAATCTAGGGAGTTAGCAATGAAAGCAACAGAAGCTGCAAAAAGTCAGGCAAAACAAAAGTACGGTGACTCTGATGGAGCAAACGGTGCCTGGAAAGAAGAGTTAGAAAATGCAGTTCAAAGGTATGCATCTATCATGACAGAACTTGATGCTGCTAAGCAAGATCTGAGGAAAACCCGTCAGGAATACGATTCATCCTCGAATGCAAGAGTGTCAGCTGTCAAGAGAACAGAAGAAGCTGAAAATGCAATGAAGGAAAACACAGAAAGAGTATCTGAGCTGTCAAAAGAAATTTCAGCTGTAAAGGAGTCAATTGAGCAAACAAAGCTAGCATATGTGGAATCACAGCAACAGCAAGCATTGGTATTATCTGAAAAAGATGCTCTTAGACAATCATACAAAGCTACCCTTGAACAATCCAAAAAGAAATTACTTGCTTTGAAAAAGGAATTTAATCCCGAAATCACAAAAAGTCTTGAAGCACAGTTGGCCGAGACAATGAATGAAATTGCGGCTCTGCATACAGAAATGGAAAACAAAAGATCGTCTGACTTGGACTCTGTGAAAACTGTTACTTTGGAGCTTGATGGTGCGAAAGAATCGCTGCAGAAAGTAGTAGATGAAGAAAACACTCTTAGAAGCTTGGTAGAGACTCTGAAGGTGGAACTAGAGAATGTAAAGAAAGAACATTCTGAGTTGAAGGAAAAAGAGTCCGAATTGGAATCCACAGTTGGGAATCTGCATGTCAAACTTCGCAAAAGTAAGTCTGAGCTCGAAGCCTGTTCGGCTGAAGAATCTAAGGTTAGAGGTGCATCTGAGGAAATGATCTTGACGCTGAGTCAGTTAACATCCGAAACTGAGGAAGCACGGCGGGAAGCAGAAGATATGAAGAACAAGACAGAAGAGCTAAAGAAAGAAGCTGAAGCTACCAAGCTTGCATTGGAAGAAGCAGAGAAAAAACTGAAAGAAGCAACGGAAGAAGCAGAAGCAGCAAAAGCAGCTGAAGCTAGTGCAATCGAGCAGATTACAGTGCTAACTGAAAGGACTAGTGCAAGACGTGCATCTACATCGTCAGAATCCGGTGCTGCAATGACAATATCGACGGAGGAGTTCGAGTCTCTAAAACGGAAAGTCGAGGAATCCGATAAATTAGCTGACATGAAAGTGGATGCTGCGAAAGCACAGGTAGAAGCTGTGAAGGCTAGCGAAAACGAGGTTTTGAAAAAGTTGGAGGCAACTCAGAAGGAGATTGAAGATATGAAAACTGCAACACAGGAGGCCTTGAAAAAGGCTGAGATGGCTGAAGCAGCAAAGAAAGCGGTTGAGGGTGAGCTTCGAAGGTGGCGGGAGCGAGAACAGAAAAAAGCGGCAGAAGCTGCAGCTCGGATACTAGCCGAAACACAGATGTCATCAGAATCATCTCCTCAGCATTATAGGATTCAAAAGCAGAATGTTCCACCTCCTCGTACAACATTGGAAGTGAAGAAGTTAGATAAAGAGAAGATTTCAGTTTCGAAGAAAATTAATATTAGTGGTATCTTTCAAAGGAAGAAAAGCAATATTGTTGAGGATGGATCTGCTTCTTATTTGCCTGGTGAGAATCCTGTATAG

Protein sequence

>Msa0486690

MVAKIRQTATGSPSPSLKPEVGEIDTSPPFQSVKAAVSLFGEGAFSGERPVLKKPKAYSAERVLAKETQLHVAEKELNKLKEQVKNAETTKAQALVELERAQRTVDDLTQKLKLITESRELAMKATEAAKSQAKQKYGDSDGANGAWKEELENAVQRYASIMTELDAAKQDLRKTRQEYDSSSNARVSAVKRTEEAENAMKENTERVSELSKEISAVKESIEQTKLAYVESQQQQALVLSEKDALRQSYKATLEQSKKKLLALKKEFNPEITKSLEAQLAETMNEIAALHTEMENKRSSDLDSVKTVTLELDGAKESLQKVVDEENTLRSLVETLKVELENVKKEHSELKEKESELESTVGNLHVKLRKSKSELEACSAEESKVRGASEEMILTLSQLTSETEEARREAEDMKNKTEELKKEAEATKLALEEAEKKLKEATEEAEAAKAAEASAIEQITVLTERTSARRASTSSESGAAMTISTEEFESLKRKVEESDKLADMKVDAAKAQVEAVKASENEVLKKLEATQKEIEDMKTATQEALKKAEMAEAAKKAVEGELRRWREREQKKAAEAAARILAETQMSSESSPQHYRIQKQNVPPPRTTLEVKKLDKEKISVSKKINISGIFQRKKSNIVEDGSASYLPGENPV*