AlfalfaGEDB | Msa0079370

M. sativa cultivar zhongmu-4 / Msa0079370

KEGG: -
GO: -
PFAM: PF06101.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079370	XP_003590981.1	98.214	560	10	0	1	560	1	560	0.0	1145

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079370	sp\|Q501D1\|Y1490_ARATH	53.899	577	244	9	1	560	1	572	0.0	654

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079370	G7I6T7	98.214	560	10	0	1	560	1	560	0.0	1145

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015130	Msa0079370	0.806098	9.698726e-50	-8.615850e-47
Msa0017320	Msa0079370	0.809735	1.633876e-50	-8.615850e-47
Msa0020410	Msa0079370	0.801215	1.000271e-48	-8.615850e-47
Msa0028620	Msa0079370	0.860647	1.784800e-63	-8.615850e-47
Msa0032080	Msa0079370	0.894884	1.619016e-75	-8.615850e-47
Msa0032100	Msa0079370	0.896179	4.727348e-76	-8.615850e-47
Msa0036140	Msa0079370	0.801258	9.802899e-49	-8.615850e-47
Msa0043980	Msa0079370	0.821998	2.995758e-53	-8.615850e-47
Msa0051210	Msa0079370	0.844720	6.346448e-59	-8.615850e-47
Msa0051450	Msa0079370	0.839715	1.342040e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079370	MtrunA17_Chr1g0190341	98.214	560	10	0	1	560	1	560	0.0	1145
Msa0079370	MtrunA17_Chr1g0190371	98.214	560	10	0	1	560	1	560	0.0	1145
Msa0079370	MtrunA17_Chr5g0395701	56.491	570	231	7	5	558	37	605	0.0	669
Msa0079370	MtrunA17_Chr4g0039581	55.185	569	240	8	1	558	3	567	0.0	654
Msa0079370	MtrunA17_Chr2g0309191	46.903	565	268	11	6	558	8	552	2.40e-175	507
Msa0079370	MtrunA17_Chr2g0310081	45.863	556	264	11	16	558	47	578	9.32e-171	496
Msa0079370	MtrunA17_Chr2g0309181	46.029	554	272	10	16	558	48	585	7.35e-170	494
Msa0079370	MtrunA17_Chr4g0074491	44.646	551	274	10	23	558	12	546	1.50e-162	474
Msa0079370	MtrunA17_Chr2g0309171	45.624	537	263	9	35	558	631	1151	1.05e-154	472
Msa0079370	MtrunA17_Chr2g0309171	45.591	533	260	9	35	554	14	529	1.86e-147	453

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079370	AT3G04350.1	64.685	572	185	7	1	560	1	567	0.0	760
Msa0079370	AT5G18490.1	65.009	543	173	7	22	560	24	553	0.0	737
Msa0079370	AT3G04350.2	65.607	535	170	6	35	560	16	545	0.0	727
Msa0079370	AT1G04090.1	53.899	577	244	9	1	560	1	572	0.0	654
Msa0079370	AT5G43950.1	53.578	573	242	9	1	558	1	564	0.0	631
Msa0079370	AT2G44260.1	45.956	544	266	9	23	558	29	552	6.71e-170	493
Msa0079370	AT2G44230.1	45.704	547	261	10	23	558	20	541	4.61e-169	491
Msa0079370	AT2G44260.2	45.865	532	260	9	35	558	71	582	2.35e-164	480
Msa0079370	AT3G01870.1	41.416	565	291	13	11	558	42	583	1.54e-140	419
Msa0079370	AT3G01880.1	41.273	550	287	12	23	558	62	589	1.32e-138	414

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Find 191 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAATAAGAGAGTAG+AGG	0.588580	1_2:+57201243	Msa0079370:five_prime_UTR
AAAATTCCAAACTTGAAATC+TGG	0.391164	1_2:+57203768	Msa0079370:three_prime_UTR
AAACAGAATAAGAGAGTAGA+GGG	0.491921	1_2:+57201244	Msa0079370:five_prime_UTR
AACAAGATCGGTGAACATGT+CGG	0.653405	1_2:+57202988	Msa0079370:CDS
AACAGAGCTTTCTGGTGAGG+AGG	0.540070	1_2:+57203458	Msa0079370:CDS
AACATTGAGATGAACAAGAT+CGG	0.572272	1_2:+57202976	Msa0079370:CDS
AACTTTCGGTTCATCTGGAT+TGG	0.384698	1_2:-57202338	None:intergenic
AAGAGAGTAGAGGGAGGAGG+AGG	0.423853	1_2:+57201253	Msa0079370:five_prime_UTR
AAGAGCCAAGGATTCTGACT+CGG	0.598761	1_2:-57202200	None:intergenic
AAGAGGTGAAGGAAGAGAAA+AGG	0.400057	1_2:-57201432	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAGAATAAGAGAGTAG+AGG	+	chr1_2:57201243-57201262	Msa0079370:five_prime_UTR	30.0%
AAACAGAATAAGAGAGTAGA+GGG	+	chr1_2:57201244-57201263	Msa0079370:five_prime_UTR	30.0%
ATGCACAAATTCTAATGGAA+AGG	+	chr1_2:57202033-57202052	Msa0079370:CDS	30.0%
GTCAAAGAAAAATTCTTTCC+AGG	+	chr1_2:57202432-57202451	Msa0079370:CDS	30.0%
AGAAAAATTCTTTCCAGGTT+TGG	+	chr1_2:57202437-57202456	Msa0079370:CDS	30.0%
GGTAAAGCTATAGATTATCA+CGG	+	chr1_2:57202739-57202758	Msa0079370:CDS	30.0%
TGCGAGAAATAATCTTAAGA+AGG	+	chr1_2:57202828-57202847	Msa0079370:CDS	30.0%
GCGAGAAATAATCTTAAGAA+GGG	+	chr1_2:57202829-57202848	Msa0079370:CDS	30.0%
CTTTACTGATATTGCAATGT+GGG	+	chr1_2:57202906-57202925	Msa0079370:CDS	30.0%
GTTCATCAATGACACTTTAA+GGG	-	chr1_2:57202959-57202978	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	57201194	57204219	57201194	ID=Msa0079370;Name=Msa0079370
chr1_2	mRNA	57201194	57204219	57201194	ID=Msa0079370-mRNA-1;Parent=Msa0079370;Name=Msa0079370-mRNA-1;_AED=0.01;_eAED=0.01;_QI=174\|1\|1\|1\|1\|1\|2\|686\|560
chr1_2	exon	57201194	57201470	57201194	ID=Msa0079370-mRNA-1:exon:18036;Parent=Msa0079370-mRNA-1
chr1_2	exon	57201954	57204219	57201954	ID=Msa0079370-mRNA-1:exon:18037;Parent=Msa0079370-mRNA-1
chr1_2	five_prime_UTR	57201194	57201367	57201194	ID=Msa0079370-mRNA-1:five_prime_utr;Parent=Msa0079370-mRNA-1
chr1_2	CDS	57201368	57201470	57201368	ID=Msa0079370-mRNA-1:cds;Parent=Msa0079370-mRNA-1
chr1_2	CDS	57201954	57203533	57201954	ID=Msa0079370-mRNA-1:cds;Parent=Msa0079370-mRNA-1
chr1_2	three_prime_UTR	57203534	57204219	57203534	ID=Msa0079370-mRNA-1:three_prime_utr;Parent=Msa0079370-mRNA-1

Gene Sequence

>Msa0079370

ATGTTTGGTTTTGAGTGTTCTTGTTGGGATAGTTTGCCAGAATTCTCTGACTCTGATCCACTTCCCTTTTCTCTTCCTTCACCTCTTCCACAATGGCCACAAGGTGGTGGTTTTGCCGGTGGAAGAATATCCCTTGGGAAAATACAAGTTACAAAAGTAAACAAGTTTGAGAAAGTTTGGAGATGCACAAATTCTAATGGAAAGGCACTAGGTTTCACATTTTATAGACCTTTGGAGATTCCAGATGGATTTTCCTGTCTTGGTTACTACTGCCACTCCAATGATCAGCCGTTGCGAGGACACGTTCTTGTCGCTCGGGAGATTACTTCCAAATCTCAAGCTGATTGTTCCGAGTCAGAATCCTTGGCTCTTAAAAAGCCACTTAATTACTCGTTAATATGGTGCATGGACTCACATGATGAATGTGTTTACTTTTGGTTGCCTAACCCTCCAAAGGGTTATAAAGCCGTCGGCATAATAGTTACCACCAATCCAGATGAACCGAAAGTTGAAGAAGTTCGATGCGTGCGAACCGATCTAACAGAAGTTTGTGAGACATCTGATCTCTTACTAACAATTAAGTCAAAGAAAAATTCTTTCCAGGTTTGGAATACACAACCTTGCGATAGAGGTATGCTAGCTAGAGGTGTATCTGTCGGAACATTCTTCTGTGGCACCTACTTTGATTCTGAACAAGTGGTTGATGTTGTGTGTTTGAAGAATCTTGATTCTTCGTTGCACGCAATGCCGAATCTGAACCAGATTCATGCTCTCATTGAGCATTACGGGCCAACGGTATATTTTCATCCTGATGAGAAATACATGCCATCATCGGTGTCATGGTTTTTCAAGAATGGAGCAATTTTGTATACTGCGGGTAATGCAAAGGGTAAAGCTATAGATTATCACGGCACAAATTTACCTGGTGGAGGATATAATGATGGTGCGTTTTGGATTGATTTGCCTACCGATGAAGATGCGAGAAATAATCTTAAGAAGGGAAACATAGAGAGTGCGGAACTCTATGTTCATGTAAAACCAGCATTAGGAGGAGCCTTTACTGATATTGCAATGTGGGTTTTTTGCCCATTCAATGGACCTGCAACCCTTAAAGTGTCATTGATGAACATTGAGATGAACAAGATCGGTGAACATGTCGGTGATTGGGAGCACTTCACCCTTCGCGTGAGCAACTTCACCGGAGAGCTTTGGTCTGTTTTTTTCTCTGAGCACAGTGGAGGTAAATGGGTTAATGCATTCGATTTGGAGTTTATTAAGGAGAATAAACCAATAGTTTATTCATCAAGACATGGGCATGCTAGCTATCCTCATGCAGGGACTTACCTTCAGGGATCATCCAAACTTGGAATAGGAGTTCGCAACGATGCTGCTAAAAGTAATTTTATTCTGGATTCGAGCTTTAGATACAAGATTGTTGCTGCCGAGTATCTTGGTGATGGAGTCATTACAGAACCATGTTGGTTGCAATATATGAGAGAGTGGGGCCCTACCATTGTATATGATTCACGTTCTGAAATAGAGAAGATAATAGACATGCTTCCAATATTTGTTAGGTTTTCTGTGGAGAACCTTTTTGAATTATTTCCAACAGAGCTTTCTGGTGAGGAGGGGCCAACTGGTCCAAAGGAGAAGGACAATTGGCTAGGTGATGAATATTGCTAG

Protein sequence

>Msa0079370

MFGFECSCWDSLPEFSDSDPLPFSLPSPLPQWPQGGGFAGGRISLGKIQVTKVNKFEKVWRCTNSNGKALGFTFYRPLEIPDGFSCLGYYCHSNDQPLRGHVLVAREITSKSQADCSESESLALKKPLNYSLIWCMDSHDECVYFWLPNPPKGYKAVGIIVTTNPDEPKVEEVRCVRTDLTEVCETSDLLLTIKSKKNSFQVWNTQPCDRGMLARGVSVGTFFCGTYFDSEQVVDVVCLKNLDSSLHAMPNLNQIHALIEHYGPTVYFHPDEKYMPSSVSWFFKNGAILYTAGNAKGKAIDYHGTNLPGGGYNDGAFWIDLPTDEDARNNLKKGNIESAELYVHVKPALGGAFTDIAMWVFCPFNGPATLKVSLMNIEMNKIGEHVGDWEHFTLRVSNFTGELWSVFFSEHSGGKWVNAFDLEFIKENKPIVYSSRHGHASYPHAGTYLQGSSKLGIGVRNDAAKSNFILDSSFRYKIVAAEYLGDGVITEPCWLQYMREWGPTIVYDSRSEIEKIIDMLPIFVRFSVENLFELFPTELSGEEGPTGPKEKDNWLGDEYC*