AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0177930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177930 MtrunA17_Chr1g0200871 92.935 184 10 1 1 181 122 305 2.27e-122 354
Msa0177930 MtrunA17_Chr4g0043801 32.222 180 92 5 2 175 144 299 7.61e-21 89.4
Msa0177930 MtrunA17_Chr3g0122631 31.176 170 88 5 16 181 114 258 2.01e-14 70.9
Msa0177930 MtrunA17_Chr6g0460631 31.515 165 76 7 18 175 183 317 6.98e-14 69.3
Msa0177930 MtrunA17_Chr3g0092341 29.240 171 77 6 16 175 185 322 1.47e-13 68.6
Msa0177930 MtrunA17_Chr7g0254391 31.481 162 80 6 18 175 188 322 1.36e-12 65.5
Msa0177930 MtrunA17_Chr4g0039811 29.508 183 89 8 2 176 163 313 5.62e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177930 AT1G34270.1 74.176 182 41 2 1 181 122 298 8.26e-91 274
Msa0177930 AT5G44930.3 33.333 177 84 5 3 175 111 257 5.26e-20 87.0
Msa0177930 AT5G44930.2 33.333 177 84 5 3 175 111 257 7.27e-20 87.0
Msa0177930 AT5G44930.1 33.333 177 84 5 3 175 111 257 7.27e-20 87.0
Msa0177930 AT2G35100.1 31.073 177 91 5 3 175 112 261 4.81e-18 81.6
Msa0177930 AT3G03650.1 33.333 171 87 5 7 175 182 327 3.09e-17 79.3
Msa0177930 AT3G45400.1 33.333 162 81 5 16 175 152 288 2.18e-16 77.0
Msa0177930 AT5G16890.1 29.032 186 86 8 2 176 169 319 9.52e-11 60.5

Find 169 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCCTTGTTGTGGATTT+TGG 0.144950 1_4:-65284085 Msa0177930:CDS
CAGTTATATGTGTTCATATT+TGG 0.227529 1_4:-65281787 Msa0177930:three_prime_UTR
AAAACACCACCCAACAAATT+TGG 0.264860 1_4:+65281615 None:intergenic
TTGATATAATTATAACTTCC+TGG 0.326298 1_4:+65283345 None:intergenic
TACTGGGTCGTTTGCAAAAC+GGG 0.327155 1_4:-65285113 Msa0177930:CDS
GTAGCCACGTTCCATCATTT+TGG 0.328106 1_4:-65282814 Msa0177930:three_prime_UTR
ACAAGAGGCTCAACGCTTCC+TGG 0.338528 1_4:-65283204 Msa0177930:three_prime_UTR
TGCTCTCGCCCAGTCGCATT+AGG 0.349546 1_4:+65282303 None:intergenic
GCTGCACTCGAGCCATGTTT+TGG 0.351102 1_4:+65282025 None:intergenic
TTTAAGTGATCAAATTTATT+GGG 0.353136 1_4:-65283762 Msa0177930:three_prime_UTR
TTAACATGCCACATTGCAAC+TGG 0.357968 1_4:+65284127 None:intergenic
GTCTATGATAATGGTCATTC+GGG 0.367182 1_4:-65281994 Msa0177930:three_prime_UTR
AGCGTTGAGCCTCTTGTTAT+TGG 0.367402 1_4:+65283210 None:intergenic
CATTTCAGACGAGGTACAAT+TGG 0.375849 1_4:+65284033 None:intergenic
GAACGTGGCTACAGCTTGTT+TGG 0.378996 1_4:+65282825 None:intergenic
GTTAAAACTGAAGCATTGTT+TGG 0.379865 1_4:-65284155 Msa0177930:CDS
ATGTTGTCGCTGACAATAAC+AGG 0.381177 1_4:+65282180 None:intergenic
AAGTTATAATTATATCAATC+TGG 0.392146 1_4:-65283340 Msa0177930:three_prime_UTR
GTCTGTTAGCTGCAATATGC+TGG 0.396385 1_4:+65282851 None:intergenic
GCCTGTAGTCCCTCCACTGT+TGG 0.396764 1_4:-65282996 Msa0177930:three_prime_UTR
CCCATGTTTGTCTATGATAA+TGG 0.401139 1_4:-65282003 Msa0177930:three_prime_UTR
ATTTAATTTACCAAATTTGT+TGG 0.401270 1_4:-65281625 Msa0177930:three_prime_UTR
TTCTAGCATCTTTCATGACT+TGG 0.405492 1_4:-65281667 Msa0177930:three_prime_UTR
TAGTCCACTGTACCTTCAAA+TGG 0.405969 1_4:+65282150 None:intergenic
GAGAGTTGTGCCACGGGACA+TGG 0.409935 1_4:+65282891 None:intergenic
TATGAGTGCTGAATTGCAAT+TGG 0.410092 1_4:-65285041 Msa0177930:CDS
CACCGACGAAATTGCGTACT+GGG 0.413292 1_4:-65285129 Msa0177930:CDS
TGTCTATGATAATGGTCATT+CGG 0.417721 1_4:-65281995 Msa0177930:three_prime_UTR
ACGAAAGCATGGAATCGTTC+TGG 0.418714 1_4:-65284935 Msa0177930:CDS
CCTGTAGTCCCTCCACTGTT+GGG 0.419184 1_4:-65282995 Msa0177930:three_prime_UTR
TAGGAAGAAGGTTGGGAATG+AGG 0.424813 1_4:-65284999 Msa0177930:CDS
GCTAGGCTCACCGGGCTTAG+TGG 0.426189 1_4:-65283034 Msa0177930:three_prime_UTR
AATGGTCATTCGGGTGGTAT+TGG 0.426651 1_4:-65281985 Msa0177930:three_prime_UTR
ATAAGAGTGATTGAATAGTT+AGG 0.431946 1_4:+65283541 None:intergenic
GCTCTCGCCCAGTCGCATTA+GGG 0.433894 1_4:+65282304 None:intergenic
GGTTCAAAGGCTAGGCTCAC+CGG 0.446636 1_4:-65283043 Msa0177930:three_prime_UTR
GTGTGTCCCCAGCCGGATGC+AGG 0.448189 1_4:+65282247 None:intergenic
CACGCAGTTCCCTCTCGTCT+AGG 0.449562 1_4:-65282937 Msa0177930:three_prime_UTR
TGATATAATTATAACTTCCT+GGG 0.452154 1_4:+65283346 None:intergenic
GTGGCTACAGCTTGTTTGGC+TGG 0.456700 1_4:+65282829 None:intergenic
AACATAGAGCTCCCATTTGA+AGG 0.457084 1_4:-65282162 Msa0177930:three_prime_UTR
CCCAACAGTGGAGGGACTAC+AGG 0.459735 1_4:+65282995 None:intergenic
TTTAATTTACCAAATTTGTT+GGG 0.465676 1_4:-65281624 Msa0177930:three_prime_UTR
TGCAATTGGGTATGGCGAAA+GGG 0.465853 1_4:-65285027 Msa0177930:CDS
CATCGGAGATGAATTCTGAT+AGG 0.470777 1_4:+65283113 None:intergenic
ACTTCCTGGGGTGTATGAAA+TGG 0.472966 1_4:+65283359 None:intergenic
CACTAATACACTATAATCAA+TGG 0.473208 1_4:+65283437 None:intergenic
CCCGGCCATTCTCCTTGTTG+TGG 0.473519 1_4:-65284092 Msa0177930:CDS
GAAGGCTTCCCTAATGCGAC+TGG 0.476447 1_4:-65282312 Msa0177930:three_prime_UTR
CATGGCACTTGTTCTTTGTG+TGG 0.476877 1_4:-65283717 Msa0177930:three_prime_UTR
ACTGACCCGGTGCCGATGCT+TGG 0.477951 1_4:+65283892 None:intergenic
GTTACTCTTTACAAAAGTAA+TGG 0.479133 1_4:-65283064 Msa0177930:three_prime_UTR
GAGCATAGTTCCAAAAGAAA+AGG 0.480134 1_4:+65283840 None:intergenic
GAGAGGGAACTGCGTGAGGC+TGG 0.488654 1_4:+65282944 None:intergenic
TCCACAACAAGGAGAATGGC+CGG 0.488926 1_4:+65284091 None:intergenic
TAATGAGCCCGGTGTAATCA+TGG 0.490173 1_4:-65282337 Msa0177930:three_prime_UTR
AGGTATGCAAAGACTTTGAA+TGG 0.492570 1_4:+65282200 None:intergenic
ACACCGACGAAATTGCGTAC+TGG 0.493490 1_4:-65285130 Msa0177930:CDS
CCTGTGATATTACTCATAGC+TGG 0.494295 1_4:-65283492 Msa0177930:three_prime_UTR
GCCTAGTTAGAGAGAAGTTG+TGG 0.494386 1_4:-65282371 Msa0177930:three_prime_UTR
AGCCGGATGCAGGCAAAACT+CGG 0.495250 1_4:+65282257 None:intergenic
TGTCAGAAAATCTCAGTTGT+GGG 0.497735 1_4:-65283670 Msa0177930:three_prime_UTR
AAGGAGCCAAGCATCGGCAC+CGG 0.501263 1_4:-65283898 Msa0177930:CDS
ACGCAGTTCCCTCTCGTCTA+GGG 0.501530 1_4:-65282936 Msa0177930:three_prime_UTR
TTACAAAAGTAATGGTTCAA+AGG 0.504435 1_4:-65283056 Msa0177930:three_prime_UTR
CACAGAGCAGCGAATACCTC+TGG 0.505151 1_4:+65282970 None:intergenic
TCAATCACTCTTATGCCCGT+TGG 0.508326 1_4:-65283532 Msa0177930:three_prime_UTR
GCTCACCGGGCTTAGTGGAC+TGG 0.508696 1_4:-65283029 Msa0177930:three_prime_UTR
CCGTGGCACAACTCTCAACT+TGG 0.508755 1_4:-65282884 Msa0177930:three_prime_UTR
TTACAGAAACTTGAGTGTGT+TGG 0.510748 1_4:+65284008 None:intergenic
GAATAAAGTTCCAAAAGAAA+AGG 0.511233 1_4:+65281687 None:intergenic
ATGGTGCAGTGAATCATATA+TGG 0.511995 1_4:-65281948 Msa0177930:three_prime_UTR
GTACTGGGTCGTTTGCAAAA+CGG 0.515407 1_4:-65285114 Msa0177930:CDS
CACAACCTTCTCTATTTCAA+AGG 0.517809 1_4:-65283917 Msa0177930:CDS
AAAATCCACAACAAGGAGAA+TGG 0.518213 1_4:+65284087 None:intergenic
GGGCGAAGGTCTATGTCTCT+TGG 0.518642 1_4:+65282912 None:intergenic
ACTCTCAACTTGGAGCGGGC+AGG 0.521500 1_4:-65282874 Msa0177930:three_prime_UTR
TAAGGTCTTATGTATGTGCC+AGG 0.522420 1_4:+65283186 None:intergenic
CACTTCCAGTCCACTAAGCC+CGG 0.523964 1_4:+65283024 None:intergenic
TTGCAATTGGGTATGGCGAA+AGG 0.524843 1_4:-65285028 Msa0177930:CDS
AAAGTAATGGTTCAAAGGCT+AGG 0.524882 1_4:-65283051 Msa0177930:three_prime_UTR
AAGTGGGAGCACCAAAATGA+TGG 0.528622 1_4:+65282803 None:intergenic
AGTTATAATTATATCAATCT+GGG 0.529547 1_4:-65283339 Msa0177930:three_prime_UTR
GTTCAAAGGCTAGGCTCACC+GGG 0.529956 1_4:-65283042 Msa0177930:three_prime_UTR
ATGAGGATTATCAGAGGCAG+AGG 0.530227 1_4:-65284982 Msa0177930:CDS
CCCACAACTTCTCTCTAACT+AGG 0.532666 1_4:+65282370 None:intergenic
AATTTACCAAATTTGTTGGG+TGG 0.535459 1_4:-65281621 Msa0177930:three_prime_UTR
TGGTATTGGCCCTGTACCTA+TGG 0.536105 1_4:-65281971 Msa0177930:three_prime_UTR
CCACAACAAGGAGAATGGCC+GGG 0.537997 1_4:+65284092 None:intergenic
ACTGCACCATCCATAGGTAC+AGG 0.542217 1_4:+65281961 None:intergenic
CACAACTCTCAACTTGGAGC+GGG 0.543008 1_4:-65282878 Msa0177930:three_prime_UTR
TGGACTCTTTATCCACTCCA+TGG 0.543547 1_4:-65283786 Msa0177930:three_prime_UTR
GGGCGAGAGCAATCAATACA+AGG 0.544501 1_4:-65282291 Msa0177930:three_prime_UTR
CAAGTTGAGAGTTGTGCCAC+GGG 0.544709 1_4:+65282885 None:intergenic
AAGAAAACCACCGGGTGTGT+TGG 0.547239 1_4:-65281872 Msa0177930:three_prime_UTR
AGGAGCCAAGCATCGGCACC+GGG 0.549166 1_4:-65283897 Msa0177930:CDS
CTCTTGTTATTGGTTCTCAA+AGG 0.549681 1_4:+65283220 None:intergenic
GTGATGCACTTAAACCAAGC+TGG 0.550784 1_4:-65282098 Msa0177930:three_prime_UTR
TCCAAAAGAAAAGGTATGCA+AGG 0.554405 1_4:+65281696 None:intergenic
AGTCCACTGTACCTTCAAAT+GGG 0.555585 1_4:+65282151 None:intergenic
CACAACAAGGAGAATGGCCG+GGG 0.558397 1_4:+65284093 None:intergenic
TTGTCAGAAAATCTCAGTTG+TGG 0.559386 1_4:-65283671 Msa0177930:three_prime_UTR
GAAGTGGGTGTGTCCCCAGC+CGG 0.560502 1_4:+65282240 None:intergenic
TGGCTCCTTTGAAATAGAGA+AGG 0.560562 1_4:+65283912 None:intergenic
AGAGTTGTGCCACGGGACAT+GGG 0.561300 1_4:+65282892 None:intergenic
TCCAAAAGAAAAGGCATGCA+AGG 0.561917 1_4:+65283849 None:intergenic
AGATGATTGACTATCCAGCT+TGG 0.562713 1_4:+65282084 None:intergenic
GTGCCACGGGACATGGGCGA+AGG 0.563818 1_4:+65282898 None:intergenic
TCGAGAGAAAAGAAAACCAC+CGG 0.564673 1_4:-65281881 Msa0177930:three_prime_UTR
CTTTGAGAACCAATAACAAG+AGG 0.565477 1_4:-65283219 Msa0177930:three_prime_UTR
TGCTGAATTGCAATTGGGTA+TGG 0.567949 1_4:-65285035 Msa0177930:CDS
TTGTGAAGAAAACGAAAGCA+TGG 0.572498 1_4:-65284946 Msa0177930:CDS
ATGAGTGCTGAATTGCAATT+GGG 0.572561 1_4:-65285040 Msa0177930:CDS
CGGGGTAGAAGATGTGTGTA+CGG 0.572897 1_4:+65283968 None:intergenic
CCTTCCTCCATGATTACACC+GGG 0.575893 1_4:+65282330 None:intergenic
CCTAGTTAGAGAGAAGTTGT+GGG 0.578078 1_4:-65282370 Msa0177930:three_prime_UTR
CATGCCATTTCATACACCCC+AGG 0.580877 1_4:-65283363 Msa0177930:three_prime_UTR
GCAATTGGGTATGGCGAAAG+GGG 0.581075 1_4:-65285026 Msa0177930:CDS
ATTGGCCCTGTACCTATGGA+TGG 0.585292 1_4:-65281967 Msa0177930:three_prime_UTR
TAACATGCCACATTGCAACT+GGG 0.588615 1_4:+65284128 None:intergenic
GCCTTCCTCCATGATTACAC+CGG 0.589678 1_4:+65282329 None:intergenic
AAGGTATGCAAGGATAGTAA+TGG 0.590252 1_4:+65281706 None:intergenic
TGATTCACTGCACCATCCAT+AGG 0.590916 1_4:+65281955 None:intergenic
AGACACGTTCCGCCAAAACA+TGG 0.591709 1_4:-65282037 Msa0177930:three_prime_UTR
GCACAACTCTCAACTTGGAG+CGG 0.595088 1_4:-65282879 Msa0177930:three_prime_UTR
CTCTTGGTCCCTAGACGAGA+GGG 0.596851 1_4:+65282928 None:intergenic
AAAGCATGGAATCGTTCTGG+TGG 0.600089 1_4:-65284932 Msa0177930:CDS
AATTTGATCACTTAAAACCA+TGG 0.600312 1_4:+65283769 None:intergenic
CCTCCACTGTTGGGAGCCAG+AGG 0.600316 1_4:-65282986 Msa0177930:three_prime_UTR
CTCTGGCTCCCAACAGTGGA+GGG 0.602383 1_4:+65282987 None:intergenic
GATATAATTATAACTTCCTG+GGG 0.604106 1_4:+65283347 None:intergenic
CAGCTAAGATTAGCTGACAA+TGG 0.605858 1_4:+65281548 None:intergenic
ATACCTCTGGCTCCCAACAG+TGG 0.607553 1_4:+65282983 None:intergenic
AGACGAGAGGGAACTGCGTG+AGG 0.612235 1_4:+65282940 None:intergenic
CCAGCTATGAGTAATATCAC+AGG 0.612974 1_4:+65283492 None:intergenic
ATTTCAAAGGAGCCAAGCAT+CGG 0.613834 1_4:-65283904 Msa0177930:CDS
CCAAGTTGAGAGTTGTGCCA+CGG 0.614801 1_4:+65282884 None:intergenic
CCATTATCATAGACAAACAT+GGG 0.615762 1_4:+65282003 None:intergenic
CCCGGTGTAATCATGGAGGA+AGG 0.618450 1_4:-65282330 Msa0177930:three_prime_UTR
GTTCAGAGATTGCATCACAA+TGG 0.619410 1_4:-65281765 Msa0177930:three_prime_UTR
CCTCTGGCTCCCAACAGTGG+AGG 0.623111 1_4:+65282986 None:intergenic
CGTCGTGGAACCAACACACC+CGG 0.623417 1_4:+65281862 None:intergenic
ACCATTATCATAGACAAACA+TGG 0.626090 1_4:+65282002 None:intergenic
TGTTAAAGATGAGATTGCCC+CGG 0.630173 1_4:-65284110 Msa0177930:CDS
AAGGCTTCCCTAATGCGACT+GGG 0.630631 1_4:-65282311 Msa0177930:three_prime_UTR
GATCTATTGAATAATGAGCC+CGG 0.632256 1_4:-65282348 Msa0177930:three_prime_UTR
CTGCACCATCCATAGGTACA+GGG 0.632850 1_4:+65281962 None:intergenic
TAAGTACATTGACATCGTCG+TGG 0.634589 1_4:+65281847 None:intergenic
TATGATAATGGTCATTCGGG+TGG 0.635201 1_4:-65281991 Msa0177930:three_prime_UTR
AAGCATGGAATCGTTCTGGT+GGG 0.635217 1_4:-65284931 Msa0177930:CDS
CGAGAGAAAAGAAAACCACC+GGG 0.637673 1_4:-65281880 Msa0177930:three_prime_UTR
TTTGGGAGTGGCGACAGTAG+GGG 0.642722 1_4:+65283571 None:intergenic
TAACATAGTGTGACCCAAGT+GGG 0.643001 1_4:+65282787 None:intergenic
AGACCTTCGCCCATGTCCCG+TGG 0.643577 1_4:-65282901 Msa0177930:three_prime_UTR
GATCACTTAAAACCATGGAG+TGG 0.653541 1_4:+65283774 None:intergenic
TCTCTTGGTCCCTAGACGAG+AGG 0.664387 1_4:+65282927 None:intergenic
GGCGAGAGCAATCAATACAA+GGG 0.664455 1_4:-65282290 Msa0177930:three_prime_UTR
GCTCCCATTTGAAGGTACAG+TGG 0.671438 1_4:-65282154 Msa0177930:three_prime_UTR
GGATTATCAGAGGCAGAGGG+AGG 0.675305 1_4:-65284978 Msa0177930:CDS
GACCCAGTACGCAATTTCGT+CGG 0.680627 1_4:+65285127 None:intergenic
TGAGGATTATCAGAGGCAGA+GGG 0.682411 1_4:-65284981 Msa0177930:CDS
GTGTTGGATCATTTCAGACG+AGG 0.688231 1_4:+65284024 None:intergenic
AGCACCAAAATGATGGAACG+TGG 0.700569 1_4:+65282810 None:intergenic
ACCCACCAAAATCCACAACA+AGG 0.701202 1_4:+65284080 None:intergenic
TTGGGAATGAGGATTATCAG+AGG 0.702859 1_4:-65284988 Msa0177930:CDS
CGTGGAACCAACACACCCGG+TGG 0.714825 1_4:+65281865 None:intergenic
CTAACATAGTGTGACCCAAG+TGG 0.715874 1_4:+65282786 None:intergenic
TGGCAGACCCAGTTGCAATG+TGG 0.723564 1_4:-65284135 Msa0177930:CDS
TGAGCCCGGTGTAATCATGG+AGG 0.740721 1_4:-65282334 Msa0177930:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAGTGATCAAATTTAT+TGG - chr1_4:65282804-65282823 Msa0177930:three_prime_UTR 15.0%
!! TTTAAGTGATCAAATTTATT+GGG - chr1_4:65282805-65282824 Msa0177930:three_prime_UTR 15.0%
!!! ATTTTCAAATTTTAAACCAA+CGG + chr1_4:65283054-65283073 None:intergenic 15.0%
!! AAGTTATAATTATATCAATC+TGG - chr1_4:65283227-65283246 Msa0177930:three_prime_UTR 15.0%
!! AGTTATAATTATATCAATCT+GGG - chr1_4:65283228-65283247 Msa0177930:three_prime_UTR 15.0%
!! ATTCCATTAAGTAAATTTAA+AGG + chr1_4:65283830-65283849 None:intergenic 15.0%
!! ATAATTAAACATTATAGGAT+TGG + chr1_4:65284066-65284085 None:intergenic 15.0%
!!! ATTTAATTTACCAAATTTGT+TGG - chr1_4:65284942-65284961 Msa0177930:CDS 15.0%
!!! TTTAATTTACCAAATTTGTT+GGG - chr1_4:65284943-65284962 Msa0177930:CDS 15.0%
!! AACATATGAACATAACATTT+GGG + chr1_4:65282239-65282258 None:intergenic 20.0%
!!! CATCTTTTATGACTTATAAT+TGG - chr1_4:65282761-65282780 Msa0177930:intron 20.0%
!!! TTTTCAAATTTTAAACCAAC+GGG + chr1_4:65283053-65283072 None:intergenic 20.0%
!! TGATATAATTATAACTTCCT+GGG + chr1_4:65283224-65283243 None:intergenic 20.0%
!! TTGATATAATTATAACTTCC+TGG + chr1_4:65283225-65283244 None:intergenic 20.0%
!!! CTAGTGCTTTTTTTTTTTTT+TGG - chr1_4:65283481-65283500 Msa0177930:three_prime_UTR 20.0%
!! ACTATGTTAGTAATATATTG+AGG - chr1_4:65283794-65283813 Msa0177930:three_prime_UTR 20.0%
!! TGACCTTTAAATTTACTTAA+TGG - chr1_4:65283824-65283843 Msa0177930:exon 20.0%
!!! TTATTGCTTTTTCATGTTTA+AGG - chr1_4:65283877-65283896 Msa0177930:CDS 20.0%
!! ATAGATGCAAAAATTTATGT+AGG - chr1_4:65284089-65284108 Msa0177930:CDS 20.0%
!!! ATTTTTCAGTAAGATTAACA+TGG + chr1_4:65284158-65284177 None:intergenic 20.0%
!! TGAAAAATTGTTCAAATTAC+AGG - chr1_4:65284170-65284189 Msa0177930:intron 20.0%
!! GAAAAATTGTTCAAATTACA+GGG - chr1_4:65284171-65284190 Msa0177930:intron 20.0%
!!! AACTTGTTTTGTTACTGTTA+TGG - chr1_4:65281716-65281735 Msa0177930:three_prime_UTR 25.0%
!!! CTGTTATGGTTTTGAATTTT+TGG - chr1_4:65281730-65281749 Msa0177930:three_prime_UTR 25.0%
! AAATAGCTTATCCATAAACA+CGG + chr1_4:65281784-65281803 None:intergenic 25.0%
!!! ATAAGCTATTTCTACAACAA+AGG - chr1_4:65281793-65281812 Msa0177930:three_prime_UTR 25.0%
! ATTAAGCCGAAAACAATTTA+TGG - chr1_4:65282054-65282073 Msa0177930:three_prime_UTR 25.0%
!! ACATGTCCATAAATTGTTTT+CGG + chr1_4:65282063-65282082 None:intergenic 25.0%
! ACATATGAACATAACATTTG+GGG + chr1_4:65282238-65282257 None:intergenic 25.0%
! CAACATATGAACATAACATT+TGG + chr1_4:65282240-65282259 None:intergenic 25.0%
! AATTTGATCACTTAAAACCA+TGG + chr1_4:65282801-65282820 None:intergenic 25.0%
!!! AATAGTTAGGCTTTTGTTTT+GGG + chr1_4:65283016-65283035 None:intergenic 25.0%
! ATAAGAGTGATTGAATAGTT+AGG + chr1_4:65283029-65283048 None:intergenic 25.0%
!! AAGTGATGATTTTTATCTAG+TGG + chr1_4:65283106-65283125 None:intergenic 25.0%
! CACTAATACACTATAATCAA+TGG + chr1_4:65283133-65283152 None:intergenic 25.0%
! GATATAATTATAACTTCCTG+GGG + chr1_4:65283223-65283242 None:intergenic 25.0%
!! TTTTCAATGTTATAAGTGTG+TGG - chr1_4:65283321-65283340 Msa0177930:three_prime_UTR 25.0%
! CTCTGTAATGTTAAAAAGTA+AGG + chr1_4:65283402-65283421 None:intergenic 25.0%
!!! AAAAAAGCACTAGTAAACAT+CGG + chr1_4:65283474-65283493 None:intergenic 25.0%
! GTTACTCTTTACAAAAGTAA+TGG - chr1_4:65283503-65283522 Msa0177930:three_prime_UTR 25.0%
! TTACAAAAGTAATGGTTCAA+AGG - chr1_4:65283511-65283530 Msa0177930:three_prime_UTR 25.0%
! GTTAGTAATATATTGAGGAT+TGG - chr1_4:65283799-65283818 Msa0177930:three_prime_UTR 25.0%
!!! ATTCTAGAACATAATGTTGA+TGG - chr1_4:65283932-65283951 Msa0177930:CDS 25.0%
!! TTTTCTTTTCTCTCGAATTA+TGG + chr1_4:65284682-65284701 None:intergenic 25.0%
! CAGTTATATGTGTTCATATT+TGG - chr1_4:65284780-65284799 Msa0177930:intron 25.0%
! GAATAAAGTTCCAAAAGAAA+AGG + chr1_4:65284883-65284902 None:intergenic 25.0%
!!! CAATAATAAGGCTTTTGTTT+TGG + chr1_4:65285138-65285157 None:intergenic 25.0%
TTAAGCTATTTATCCAAGCA+TGG + chr1_4:65281756-65281775 None:intergenic 30.0%
!! GTTGTTTTCGTAAGAATTGT+AGG - chr1_4:65281894-65281913 Msa0177930:three_prime_UTR 30.0%
TATAAGCCCTTATGCTAAAA+GGG + chr1_4:65281944-65281963 None:intergenic 30.0%
TTATAAGCCCTTATGCTAAA+AGG + chr1_4:65281945-65281964 None:intergenic 30.0%
! ACTGTTTTCGTAACTTATCA+TGG - chr1_4:65282019-65282038 Msa0177930:three_prime_UTR 30.0%
CACTACATTAAGTGCTTATT+TGG + chr1_4:65282123-65282142 None:intergenic 30.0%
! CTGTCATTTAAGAATGTTCA+AGG - chr1_4:65282151-65282170 Msa0177930:three_prime_UTR 30.0%
CATATGAACATAACATTTGG+GGG + chr1_4:65282237-65282256 None:intergenic 30.0%
TGCATGTGTGAAAATGTAAA+AGG - chr1_4:65282328-65282347 Msa0177930:three_prime_UTR 30.0%
!! GTTAAAACTGAAGCATTGTT+TGG - chr1_4:65282412-65282431 Msa0177930:intron 30.0%
! TGTTTTCTGACAAATGCAAA+CGG + chr1_4:65282622-65282641 None:intergenic 30.0%
AAAAAGAAACAATACTGACC+CGG + chr1_4:65282691-65282710 None:intergenic 30.0%
!! GAATAGTTAGGCTTTTGTTT+TGG + chr1_4:65283017-65283036 None:intergenic 30.0%
TAAATAGTTGACATCCTTGA+GGG - chr1_4:65283955-65283974 Msa0177930:CDS 30.0%
CCAAAGAGGAGAAAAATAAA+AGG + chr1_4:65283992-65284011 None:intergenic 30.0%
!!! CCTTTTATTTTTCTCCTCTT+TGG - chr1_4:65283989-65284008 Msa0177930:CDS 30.0%
TATGTAGGTATTCATCTAAC+AGG - chr1_4:65284104-65284123 Msa0177930:CDS 30.0%
AAATTGTTCAAATTACAGGG+AGG - chr1_4:65284174-65284193 Msa0177930:intron 30.0%
TTTGAATGGCATCAAAAAGT+CGG + chr1_4:65284356-65284375 None:intergenic 30.0%
! TTTTCAGTTTTTGTAGCAGT+TGG - chr1_4:65284447-65284466 Msa0177930:intron 30.0%
CCATTATCATAGACAAACAT+GGG + chr1_4:65284567-65284586 None:intergenic 30.0%
ACCATTATCATAGACAAACA+TGG + chr1_4:65284568-65284587 None:intergenic 30.0%
!! TGTCTATGATAATGGTCATT+CGG - chr1_4:65284572-65284591 Msa0177930:intron 30.0%
! ATTATGGCTTCTTTTATCGT+TGG + chr1_4:65284666-65284685 None:intergenic 30.0%
!!! CATCACAATGGTTTTTTTGT+TGG - chr1_4:65284814-65284833 Msa0177930:intron 30.0%
!!! TTTTTTGTTGGATGTCGTAT+AGG - chr1_4:65284826-65284845 Msa0177930:intron 30.0%
!! AATTTACCAAATTTGTTGGG+TGG - chr1_4:65284946-65284965 Msa0177930:CDS 30.0%
GCACTCATAGTAGCAAAAAA+CGG + chr1_4:65281515-65281534 None:intergenic 35.0%
!! TATGAGTGCTGAATTGCAAT+TGG - chr1_4:65281526-65281545 Msa0177930:three_prime_UTR 35.0%
!! ATGAGTGCTGAATTGCAATT+GGG - chr1_4:65281527-65281546 Msa0177930:three_prime_UTR 35.0%
TTGTGAAGAAAACGAAAGCA+TGG - chr1_4:65281621-65281640 Msa0177930:three_prime_UTR 35.0%
AAGTTTGCAAATTGCAAGCA+CGG + chr1_4:65281701-65281720 None:intergenic 35.0%
!!! TTTGAATTTTTGGCCATGCT+TGG - chr1_4:65281740-65281759 Msa0177930:three_prime_UTR 35.0%
GACATGTTCAAAAGATTCTC+AGG + chr1_4:65281870-65281889 None:intergenic 35.0%
TTTCGTAAGAATTGTAGGCT+CGG - chr1_4:65281899-65281918 Msa0177930:three_prime_UTR 35.0%
! CTTATGCCCTTTTAGCATAA+GGG - chr1_4:65281935-65281954 Msa0177930:three_prime_UTR 35.0%
AACTTATCATGGAGAGCTTA+TGG - chr1_4:65282030-65282049 Msa0177930:three_prime_UTR 35.0%
ACTTATCATGGAGAGCTTAT+GGG - chr1_4:65282031-65282050 Msa0177930:three_prime_UTR 35.0%
TGTATGCATAGCTGCAATAA+GGG - chr1_4:65282191-65282210 Msa0177930:three_prime_UTR 35.0%
! TGTGTTGATCATGATGATGT+TGG - chr1_4:65282283-65282302 Msa0177930:three_prime_UTR 35.0%
! GTGTTGATCATGATGATGTT+GGG - chr1_4:65282284-65282303 Msa0177930:three_prime_UTR 35.0%
!! AGTTAGTCTTTGGAATTGTC+AGG - chr1_4:65282385-65282404 Msa0177930:intron 35.0%
AAAATCCACAACAAGGAGAA+TGG + chr1_4:65282483-65282502 None:intergenic 35.0%
!! ATTCTCCTTGTTGTGGATTT+TGG - chr1_4:65282482-65282501 Msa0177930:intron 35.0%
TTACAGAAACTTGAGTGTGT+TGG + chr1_4:65282562-65282581 None:intergenic 35.0%
! TTTTCTGACAAATGCAAACG+GGG + chr1_4:65282620-65282639 None:intergenic 35.0%
! GTTTTCTGACAAATGCAAAC+GGG + chr1_4:65282621-65282640 None:intergenic 35.0%
CACAACCTTCTCTATTTCAA+AGG - chr1_4:65282650-65282669 Msa0177930:intron 35.0%
!! GGGTCAGTATTGTTTCTTTT+TGG - chr1_4:65282690-65282709 Msa0177930:intron 35.0%
GAGCATAGTTCCAAAAGAAA+AGG + chr1_4:65282730-65282749 None:intergenic 35.0%
! GTTCTTTTCTTTCTGTGTCA+TGG - chr1_4:65282832-65282851 Msa0177930:three_prime_UTR 35.0%
TTGTCAGAAAATCTCAGTTG+TGG - chr1_4:65282896-65282915 Msa0177930:three_prime_UTR 35.0%
TGTCAGAAAATCTCAGTTGT+GGG - chr1_4:65282897-65282916 Msa0177930:three_prime_UTR 35.0%
!! CTCTTGTTATTGGTTCTCAA+AGG + chr1_4:65283350-65283369 None:intergenic 35.0%
! CTTTGAGAACCAATAACAAG+AGG - chr1_4:65283348-65283367 Msa0177930:three_prime_UTR 35.0%
AAAGTAATGGTTCAAAGGCT+AGG - chr1_4:65283516-65283535 Msa0177930:three_prime_UTR 35.0%
GTAAATAGTTGACATCCTTG+AGG - chr1_4:65283954-65283973 Msa0177930:CDS 35.0%
GATCTATTGAATAATGAGCC+CGG - chr1_4:65284219-65284238 Msa0177930:intron 35.0%
AGGTATGCAAAGACTTTGAA+TGG + chr1_4:65284370-65284389 None:intergenic 35.0%
CCCATGTTTGTCTATGATAA+TGG - chr1_4:65284564-65284583 Msa0177930:intron 35.0%
!! GTCTATGATAATGGTCATTC+GGG - chr1_4:65284573-65284592 Msa0177930:intron 35.0%
ATGGTGCAGTGAATCATATA+TGG - chr1_4:65284619-65284638 Msa0177930:intron 35.0%
! CTTTTATCGTTGGCAACTTT+TGG + chr1_4:65284656-65284675 None:intergenic 35.0%
AAGGTATGCAAGGATAGTAA+TGG + chr1_4:65284864-65284883 None:intergenic 35.0%
! TCCTTGCATACCTTTTCTTT+TGG - chr1_4:65284870-65284889 Msa0177930:intron 35.0%
! TCCAAAAGAAAAGGTATGCA+AGG + chr1_4:65284874-65284893 None:intergenic 35.0%
TTCTAGCATCTTTCATGACT+TGG - chr1_4:65284900-65284919 Msa0177930:intron 35.0%
AAAACACCACCCAACAAATT+TGG + chr1_4:65284955-65284974 None:intergenic 35.0%
!!! TAAGGCTTTTGTTTTGGAGA+TGG + chr1_4:65285132-65285151 None:intergenic 35.0%
TGCTGAATTGCAATTGGGTA+TGG - chr1_4:65281532-65281551 Msa0177930:three_prime_UTR 40.0%
!! GAAAGGGGTTTTTAGGAAGA+AGG - chr1_4:65281556-65281575 Msa0177930:three_prime_UTR 40.0%
!! GGGTTTTTAGGAAGAAGGTT+GGG - chr1_4:65281561-65281580 Msa0177930:three_prime_UTR 40.0%
TTGGGAATGAGGATTATCAG+AGG - chr1_4:65281579-65281598 Msa0177930:three_prime_UTR 40.0%
!! GATCATGTGTTTGTTGTCAC+TGG - chr1_4:65281662-65281681 Msa0177930:three_prime_UTR 40.0%
GCTTAATTCAGCCGTGTTTA+TGG - chr1_4:65281770-65281789 Msa0177930:three_prime_UTR 40.0%
! TAAGAATTGTAGGCTCGGTT+TGG - chr1_4:65281904-65281923 Msa0177930:three_prime_UTR 40.0%
! GCTTATGCCCTTTTAGCATA+AGG - chr1_4:65281934-65281953 Msa0177930:three_prime_UTR 40.0%
CTGTATGCATAGCTGCAATA+AGG - chr1_4:65282190-65282209 Msa0177930:three_prime_UTR 40.0%
ATGATGTTGGGAACAATGAG+AGG - chr1_4:65282296-65282315 Msa0177930:three_prime_UTR 40.0%
CCAAAGACTAACTCATAAGC+TGG + chr1_4:65282378-65282397 None:intergenic 40.0%
!! CCAGCTTATGAGTTAGTCTT+TGG - chr1_4:65282375-65282394 Msa0177930:three_prime_UTR 40.0%
TAACATGCCACATTGCAACT+GGG + chr1_4:65282442-65282461 None:intergenic 40.0%
TTAACATGCCACATTGCAAC+TGG + chr1_4:65282443-65282462 None:intergenic 40.0%
TGTTAAAGATGAGATTGCCC+CGG - chr1_4:65282457-65282476 Msa0177930:intron 40.0%
!! TCCTTGTTGTGGATTTTGGT+GGG - chr1_4:65282486-65282505 Msa0177930:intron 40.0%
CATTTCAGACGAGGTACAAT+TGG + chr1_4:65282537-65282556 None:intergenic 40.0%
!! TGGCTCCTTTGAAATAGAGA+AGG + chr1_4:65282658-65282677 None:intergenic 40.0%
ATTTCAAAGGAGCCAAGCAT+CGG - chr1_4:65282663-65282682 Msa0177930:intron 40.0%
! TCCAAAAGAAAAGGCATGCA+AGG + chr1_4:65282721-65282740 None:intergenic 40.0%
GATCACTTAAAACCATGGAG+TGG + chr1_4:65282796-65282815 None:intergenic 40.0%
!!! TTAGGCTTTTGTTTTGGGAG+TGG + chr1_4:65283011-65283030 None:intergenic 40.0%
CCAGCTATGAGTAATATCAC+AGG + chr1_4:65283078-65283097 None:intergenic 40.0%
CCTGTGATATTACTCATAGC+TGG - chr1_4:65283075-65283094 Msa0177930:three_prime_UTR 40.0%
! TAAGGTCTTATGTATGTGCC+AGG + chr1_4:65283384-65283403 None:intergenic 40.0%
CATCGGAGATGAATTCTGAT+AGG + chr1_4:65283457-65283476 None:intergenic 40.0%
TAACATAGTGTGACCCAAGT+GGG + chr1_4:65283783-65283802 None:intergenic 40.0%
AGGCTCATATATGACCAAAG+AGG + chr1_4:65284006-65284025 None:intergenic 40.0%
GAGCAAAAACAATTCAGCTG+AGG + chr1_4:65284026-65284045 None:intergenic 40.0%
! TAACAGGAGTGTGATTATGC+TGG - chr1_4:65284120-65284139 Msa0177930:CDS 40.0%
CCTAGTTAGAGAGAAGTTGT+GGG - chr1_4:65284197-65284216 Msa0177930:intron 40.0%
TCAAAAAGTCGGCATGAAGT+GGG + chr1_4:65284345-65284364 None:intergenic 40.0%
ATCAAAAAGTCGGCATGAAG+TGG + chr1_4:65284346-65284365 None:intergenic 40.0%
ATGTTGTCGCTGACAATAAC+AGG + chr1_4:65284390-65284409 None:intergenic 40.0%
AACATAGAGCTCCCATTTGA+AGG - chr1_4:65284405-65284424 Msa0177930:intron 40.0%
AGTCCACTGTACCTTCAAAT+GGG + chr1_4:65284419-65284438 None:intergenic 40.0%
TAGTCCACTGTACCTTCAAA+TGG + chr1_4:65284420-65284439 None:intergenic 40.0%
AGATGATTGACTATCCAGCT+TGG + chr1_4:65284486-65284505 None:intergenic 40.0%
!! TATGATAATGGTCATTCGGG+TGG - chr1_4:65284576-65284595 Msa0177930:intron 40.0%
TCGAGAGAAAAGAAAACCAC+CGG - chr1_4:65284686-65284705 Msa0177930:intron 40.0%
TAAGTACATTGACATCGTCG+TGG + chr1_4:65284723-65284742 None:intergenic 40.0%
GTTCAGAGATTGCATCACAA+TGG - chr1_4:65284802-65284821 Msa0177930:intron 40.0%
!!! GTCTCATGGTACTTTTTCTG+TGG - chr1_4:65284976-65284995 Msa0177930:CDS 40.0%
! CAGCTAAGATTAGCTGACAA+TGG + chr1_4:65285022-65285041 None:intergenic 40.0%
GTACTGGGTCGTTTGCAAAA+CGG - chr1_4:65281453-65281472 Msa0177930:three_prime_UTR 45.0%
TACTGGGTCGTTTGCAAAAC+GGG - chr1_4:65281454-65281473 Msa0177930:three_prime_UTR 45.0%
TTGCAATTGGGTATGGCGAA+AGG - chr1_4:65281539-65281558 Msa0177930:three_prime_UTR 45.0%
TGCAATTGGGTATGGCGAAA+GGG - chr1_4:65281540-65281559 Msa0177930:three_prime_UTR 45.0%
! GTATGGCGAAAGGGGTTTTT+AGG - chr1_4:65281549-65281568 Msa0177930:three_prime_UTR 45.0%
!! GGGGTTTTTAGGAAGAAGGT+TGG - chr1_4:65281560-65281579 Msa0177930:three_prime_UTR 45.0%
TAGGAAGAAGGTTGGGAATG+AGG - chr1_4:65281568-65281587 Msa0177930:three_prime_UTR 45.0%
ATGAGGATTATCAGAGGCAG+AGG - chr1_4:65281585-65281604 Msa0177930:three_prime_UTR 45.0%
TGAGGATTATCAGAGGCAGA+GGG - chr1_4:65281586-65281605 Msa0177930:three_prime_UTR 45.0%
! ACGAAAGCATGGAATCGTTC+TGG - chr1_4:65281632-65281651 Msa0177930:three_prime_UTR 45.0%
AAAGCATGGAATCGTTCTGG+TGG - chr1_4:65281635-65281654 Msa0177930:three_prime_UTR 45.0%
AAGCATGGAATCGTTCTGGT+GGG - chr1_4:65281636-65281655 Msa0177930:three_prime_UTR 45.0%
!! CTCCTTGTTGTGGATTTTGG+TGG - chr1_4:65282485-65282504 Msa0177930:intron 45.0%
ACCCACCAAAATCCACAACA+AGG + chr1_4:65282490-65282509 None:intergenic 45.0%
!! TTGTTGTGGATTTTGGTGGG+TGG - chr1_4:65282489-65282508 Msa0177930:intron 45.0%
GTGTTGGATCATTTCAGACG+AGG + chr1_4:65282546-65282565 None:intergenic 45.0%
! GCCTTGCATGCCTTTTCTTT+TGG - chr1_4:65282717-65282736 Msa0177930:intron 45.0%
TGGACTCTTTATCCACTCCA+TGG - chr1_4:65282781-65282800 Msa0177930:intron 45.0%
CATGGCACTTGTTCTTTGTG+TGG - chr1_4:65282850-65282869 Msa0177930:three_prime_UTR 45.0%
TCAATCACTCTTATGCCCGT+TGG - chr1_4:65283035-65283054 Msa0177930:three_prime_UTR 45.0%
ACTTCCTGGGGTGTATGAAA+TGG + chr1_4:65283211-65283230 None:intergenic 45.0%
! AGCGTTGAGCCTCTTGTTAT+TGG + chr1_4:65283360-65283379 None:intergenic 45.0%
GTCTGTTAGCTGCAATATGC+TGG + chr1_4:65283719-65283738 None:intergenic 45.0%
! GTAGCCACGTTCCATCATTT+TGG - chr1_4:65283753-65283772 Msa0177930:three_prime_UTR 45.0%
! AGCACCAAAATGATGGAACG+TGG + chr1_4:65283760-65283779 None:intergenic 45.0%
!! AAGTGGGAGCACCAAAATGA+TGG + chr1_4:65283767-65283786 None:intergenic 45.0%
!!! ATCATTTTGGTGCTCCCACT+TGG - chr1_4:65283766-65283785 Msa0177930:three_prime_UTR 45.0%
!!! TCATTTTGGTGCTCCCACTT+GGG - chr1_4:65283767-65283786 Msa0177930:three_prime_UTR 45.0%
CTAACATAGTGTGACCCAAG+TGG + chr1_4:65283784-65283803 None:intergenic 45.0%
GCCTAGTTAGAGAGAAGTTG+TGG - chr1_4:65284196-65284215 Msa0177930:intron 45.0%
CCCACAACTTCTCTCTAACT+AGG + chr1_4:65284200-65284219 None:intergenic 45.0%
TAATGAGCCCGGTGTAATCA+TGG - chr1_4:65284230-65284249 Msa0177930:intron 45.0%
GGCGAGAGCAATCAATACAA+GGG - chr1_4:65284277-65284296 Msa0177930:intron 45.0%
GTGATGCACTTAAACCAAGC+TGG - chr1_4:65284469-65284488 Msa0177930:intron 45.0%
AATGGTCATTCGGGTGGTAT+TGG - chr1_4:65284582-65284601 Msa0177930:intron 45.0%
TGATTCACTGCACCATCCAT+AGG + chr1_4:65284615-65284634 None:intergenic 45.0%
CGAGAGAAAAGAAAACCACC+GGG - chr1_4:65284687-65284706 Msa0177930:intron 45.0%
!! TGGGTGGTGTTTTTGTCTCA+TGG - chr1_4:65284962-65284981 Msa0177930:CDS 45.0%
!!! ATTTTATAATTAAACATTAT+AGG + chr1_4:65284071-65284090 None:intergenic 5.0%
ACACCGACGAAATTGCGTAC+TGG - chr1_4:65281437-65281456 Msa0177930:three_prime_UTR 50.0%
CACCGACGAAATTGCGTACT+GGG - chr1_4:65281438-65281457 Msa0177930:three_prime_UTR 50.0%
GACCCAGTACGCAATTTCGT+CGG + chr1_4:65281443-65281462 None:intergenic 50.0%
GCAATTGGGTATGGCGAAAG+GGG - chr1_4:65281541-65281560 Msa0177930:three_prime_UTR 50.0%
TCCACAACAAGGAGAATGGC+CGG + chr1_4:65282479-65282498 None:intergenic 50.0%
CGGGGTAGAAGATGTGTGTA+CGG + chr1_4:65282602-65282621 None:intergenic 50.0%
!! TTTTGGGAGTGGCGACAGTA+GGG + chr1_4:65283000-65283019 None:intergenic 50.0%
! CATGCCATTTCATACACCCC+AGG - chr1_4:65283204-65283223 Msa0177930:three_prime_UTR 50.0%
! CAAGTTGAGAGTTGTGCCAC+GGG + chr1_4:65283685-65283704 None:intergenic 50.0%
! CCAAGTTGAGAGTTGTGCCA+CGG + chr1_4:65283686-65283705 None:intergenic 50.0%
GCACAACTCTCAACTTGGAG+CGG - chr1_4:65283688-65283707 Msa0177930:three_prime_UTR 50.0%
CACAACTCTCAACTTGGAGC+GGG - chr1_4:65283689-65283708 Msa0177930:three_prime_UTR 50.0%
! GAACGTGGCTACAGCTTGTT+TGG + chr1_4:65283745-65283764 None:intergenic 50.0%
AGGCAGAGAATTCACCCTCA+AGG + chr1_4:65283972-65283991 None:intergenic 50.0%
CCTTCCTCCATGATTACACC+GGG + chr1_4:65284240-65284259 None:intergenic 50.0%
GCCTTCCTCCATGATTACAC+CGG + chr1_4:65284241-65284260 None:intergenic 50.0%
AAGGCTTCCCTAATGCGACT+GGG - chr1_4:65284256-65284275 Msa0177930:intron 50.0%
GGGCGAGAGCAATCAATACA+AGG - chr1_4:65284276-65284295 Msa0177930:intron 50.0%
! ATCCGAGTTTTGCCTGCATC+CGG - chr1_4:65284308-65284327 Msa0177930:intron 50.0%
! GCTCCCATTTGAAGGTACAG+TGG - chr1_4:65284413-65284432 Msa0177930:intron 50.0%
AGACACGTTCCGCCAAAACA+TGG - chr1_4:65284530-65284549 Msa0177930:intron 50.0%
!! TGGTATTGGCCCTGTACCTA+TGG - chr1_4:65284596-65284615 Msa0177930:intron 50.0%
ATTGGCCCTGTACCTATGGA+TGG - chr1_4:65284600-65284619 Msa0177930:intron 50.0%
CTGCACCATCCATAGGTACA+GGG + chr1_4:65284608-65284627 None:intergenic 50.0%
ACTGCACCATCCATAGGTAC+AGG + chr1_4:65284609-65284628 None:intergenic 50.0%
AAGAAAACCACCGGGTGTGT+TGG - chr1_4:65284695-65284714 Msa0177930:intron 50.0%
GGATTATCAGAGGCAGAGGG+AGG - chr1_4:65281589-65281608 Msa0177930:three_prime_UTR 55.0%
TGGCAGACCCAGTTGCAATG+TGG - chr1_4:65282432-65282451 Msa0177930:intron 55.0%
CACAACAAGGAGAATGGCCG+GGG + chr1_4:65282477-65282496 None:intergenic 55.0%
CCACAACAAGGAGAATGGCC+GGG + chr1_4:65282478-65282497 None:intergenic 55.0%
TTTGGGAGTGGCGACAGTAG+GGG + chr1_4:65282999-65283018 None:intergenic 55.0%
!!! GTTTTGGGAGTGGCGACAGT+AGG + chr1_4:65283001-65283020 None:intergenic 55.0%
ACAAGAGGCTCAACGCTTCC+TGG - chr1_4:65283363-65283382 Msa0177930:three_prime_UTR 55.0%
GGTTCAAAGGCTAGGCTCAC+CGG - chr1_4:65283524-65283543 Msa0177930:three_prime_UTR 55.0%
GTTCAAAGGCTAGGCTCACC+GGG - chr1_4:65283525-65283544 Msa0177930:three_prime_UTR 55.0%
CACTTCCAGTCCACTAAGCC+CGG + chr1_4:65283546-65283565 None:intergenic 55.0%
CCTGTAGTCCCTCCACTGTT+GGG - chr1_4:65283572-65283591 Msa0177930:three_prime_UTR 55.0%
! ATACCTCTGGCTCCCAACAG+TGG + chr1_4:65283587-65283606 None:intergenic 55.0%
CACAGAGCAGCGAATACCTC+TGG + chr1_4:65283600-65283619 None:intergenic 55.0%
ACGCAGTTCCCTCTCGTCTA+GGG - chr1_4:65283631-65283650 Msa0177930:three_prime_UTR 55.0%
CTCTTGGTCCCTAGACGAGA+GGG + chr1_4:65283642-65283661 None:intergenic 55.0%
TCTCTTGGTCCCTAGACGAG+AGG + chr1_4:65283643-65283662 None:intergenic 55.0%
GGGCGAAGGTCTATGTCTCT+TGG + chr1_4:65283658-65283677 None:intergenic 55.0%
AGAGTTGTGCCACGGGACAT+GGG + chr1_4:65283678-65283697 None:intergenic 55.0%
CCGTGGCACAACTCTCAACT+TGG - chr1_4:65283683-65283702 Msa0177930:three_prime_UTR 55.0%
! GTGGCTACAGCTTGTTTGGC+TGG + chr1_4:65283741-65283760 None:intergenic 55.0%
TGAGCCCGGTGTAATCATGG+AGG - chr1_4:65284233-65284252 Msa0177930:intron 55.0%
CCCGGTGTAATCATGGAGGA+AGG - chr1_4:65284237-65284256 Msa0177930:intron 55.0%
GAAGGCTTCCCTAATGCGAC+TGG - chr1_4:65284255-65284274 Msa0177930:intron 55.0%
AGCCGGATGCAGGCAAAACT+CGG + chr1_4:65284313-65284332 None:intergenic 55.0%
! AGTTTTGCCTGCATCCGGCT+GGG - chr1_4:65284313-65284332 Msa0177930:intron 55.0%
!! GCACTCGAGCCATGTTTTGG+CGG + chr1_4:65284542-65284561 None:intergenic 55.0%
! GCTGCACTCGAGCCATGTTT+TGG + chr1_4:65284545-65284564 None:intergenic 55.0%
CCCGGCCATTCTCCTTGTTG+TGG - chr1_4:65282475-65282494 Msa0177930:intron 60.0%
!! AAGGAGCCAAGCATCGGCAC+CGG - chr1_4:65282669-65282688 Msa0177930:intron 60.0%
GCCTGTAGTCCCTCCACTGT+TGG - chr1_4:65283571-65283590 Msa0177930:three_prime_UTR 60.0%
CCCAACAGTGGAGGGACTAC+AGG + chr1_4:65283575-65283594 None:intergenic 60.0%
! CTCTGGCTCCCAACAGTGGA+GGG + chr1_4:65283583-65283602 None:intergenic 60.0%
AGACGAGAGGGAACTGCGTG+AGG + chr1_4:65283630-65283649 None:intergenic 60.0%
CACGCAGTTCCCTCTCGTCT+AGG - chr1_4:65283630-65283649 Msa0177930:three_prime_UTR 60.0%
GAGAGTTGTGCCACGGGACA+TGG + chr1_4:65283679-65283698 None:intergenic 60.0%
ACTCTCAACTTGGAGCGGGC+AGG - chr1_4:65283693-65283712 Msa0177930:three_prime_UTR 60.0%
GCTCTCGCCCAGTCGCATTA+GGG + chr1_4:65284266-65284285 None:intergenic 60.0%
TGCTCTCGCCCAGTCGCATT+AGG + chr1_4:65284267-65284286 None:intergenic 60.0%
! GAGTTTTGCCTGCATCCGGC+TGG - chr1_4:65284312-65284331 Msa0177930:intron 60.0%
! GTTTTGCCTGCATCCGGCTG+GGG - chr1_4:65284314-65284333 Msa0177930:intron 60.0%
CGTCGTGGAACCAACACACC+CGG + chr1_4:65284708-65284727 None:intergenic 60.0%
!! AGGAGCCAAGCATCGGCACC+GGG - chr1_4:65282670-65282689 Msa0177930:intron 65.0%
!! ACTGACCCGGTGCCGATGCT+TGG + chr1_4:65282678-65282697 None:intergenic 65.0%
GCTAGGCTCACCGGGCTTAG+TGG - chr1_4:65283533-65283552 Msa0177930:three_prime_UTR 65.0%
! GCTCACCGGGCTTAGTGGAC+TGG - chr1_4:65283538-65283557 Msa0177930:three_prime_UTR 65.0%
! CCTCTGGCTCCCAACAGTGG+AGG + chr1_4:65283584-65283603 None:intergenic 65.0%
CCTCCACTGTTGGGAGCCAG+AGG - chr1_4:65283581-65283600 Msa0177930:three_prime_UTR 65.0%
GAGAGGGAACTGCGTGAGGC+TGG + chr1_4:65283626-65283645 None:intergenic 65.0%
AGACCTTCGCCCATGTCCCG+TGG - chr1_4:65283666-65283685 Msa0177930:three_prime_UTR 65.0%
GAAGTGGGTGTGTCCCCAGC+CGG + chr1_4:65284330-65284349 None:intergenic 65.0%
CGTGGAACCAACACACCCGG+TGG + chr1_4:65284705-65284724 None:intergenic 65.0%
GTGCCACGGGACATGGGCGA+AGG + chr1_4:65283672-65283691 None:intergenic 70.0%
GTGTGTCCCCAGCCGGATGC+AGG + chr1_4:65284323-65284342 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 65281422 65285167 65281422 ID=Msa0177930;Name=Msa0177930
chr1_4 mRNA 65281422 65285167 65281422 ID=Msa0177930-mRNA-1;Parent=Msa0177930;Name=Msa0177930-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0.66|1|0.5|0.66|3|2014|199
chr1_4 exon 65281422 65282397 65281422 ID=Msa0177930-mRNA-1:exon:21257;Parent=Msa0177930-mRNA-1
chr1_4 exon 65282791 65284182 65282791 ID=Msa0177930-mRNA-1:exon:21256;Parent=Msa0177930-mRNA-1
chr1_4 exon 65284922 65285167 65284922 ID=Msa0177930-mRNA-1:exon:21255;Parent=Msa0177930-mRNA-1
chr1_4 CDS 65284922 65285167 65284922 ID=Msa0177930-mRNA-1:cds;Parent=Msa0177930-mRNA-1
chr1_4 CDS 65283829 65284182 65283829 ID=Msa0177930-mRNA-1:cds;Parent=Msa0177930-mRNA-1
chr1_4 three_prime_UTR 65282791 65283828 65282791 ID=Msa0177930-mRNA-1:three_prime_utr;Parent=Msa0177930-mRNA-1
chr1_4 three_prime_UTR 65281422 65282397 65281422 ID=Msa0177930-mRNA-1:three_prime_utr;Parent=Msa0177930-mRNA-1
Gene Sequence

>Msa0177930

ATGGGGGATCTTGTTACACCGACGAAATTGCGTACTGGGTCGTTTGCAAAACGGGTTTTTGATGAACGTGATGCTGATGTTGTTTTTGTTCCGTTTTTTGCTACTATGAGTGCTGAATTGCAATTGGGTATGGCGAAAGGGGTTTTTAGGAAGAAGGTTGGGAATGAGGATTATCAGAGGCAGAGGGAGGTTGTTGATTTTGTGAAGAAAACGAAAGCATGGAATCGTTCTGGTGGGAGAGATCATGTTATGTTAAAACTGAAGCATTGTTTGGCAGACCCAGTTGCAATGTGGCATGTTAAAGATGAGATTGCCCCGGCCATTCTCCTTGTTGTGGATTTTGGTGGGTGGTATAGACTTGACTCAAAATCATCCAATTGTACCTCGTCTGAAATGATCCAACACACTCAAGTTTCTGTAATTAAAGACGTGATTGTGCCGTACACACATCTTCTACCCCGTTTGCATTTGTCAGAAAACAAGCAGCGTCACAACCTTCTCTATTTCAAAGGAGCCAAGCATCGGCACCGGGTCAGTATTGTTTCTTTTTGGACTAGCCTTGCATGCCTTTTCTTTTGGAACTATGCTCTACAGCTTTAG
Protein sequence

>Msa0177930

MGDLVTPTKLRTGSFAKRVFDERDADVVFVPFFATMSAELQLGMAKGVFRKKVGNEDYQRQREVVDFVKKTKAWNRSGGRDHVMLKLKHCLADPVAMWHVKDEIAPAILLVVDFGGWYRLDSKSSNCTSSEMIQHTQVSVIKDVIVPYTHLLPRLHLSENKQRHNLLYFKGAKHRHRVSIVSFWTSLACLFFWNYALQL*