AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0303200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0303200 MtrunA17_Chr2g0329741 94.583 240 9 1 1 240 1 236 4.94e-164 455
Msa0303200 MtrunA17_Chr2g0329741 77.083 48 11 0 241 288 105 152 8.30e-15 72.4
Msa0303200 MtrunA17_Chr4g0032231 32.663 199 116 4 37 226 55 244 1.38e-24 99.8
Msa0303200 MtrunA17_Chr1g0160481 27.160 162 109 2 53 211 36 191 5.89e-18 80.9
Msa0303200 MtrunA17_Chr3g0119081 27.160 162 109 2 53 211 40 195 8.97e-18 80.5
Msa0303200 MtrunA17_Chr1g0182521 30.702 114 65 1 129 242 485 584 6.08e-12 65.9
Msa0303200 MtrunA17_Chr3g0143411 29.661 118 82 1 86 203 243 359 6.99e-11 62.8
Msa0303200 MtrunA17_Chr5g0441971 28.472 144 76 4 145 288 29 145 9.16e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0303200 AT3G46870.1 34.091 176 104 3 52 224 72 238 2.85e-22 93.6
Msa0303200 AT5G09315.1 29.108 213 124 5 44 235 44 250 1.07e-19 86.7
Msa0303200 AT3G46870.2 31.915 188 104 4 52 224 72 250 5.69e-19 85.1
Msa0303200 AT4G39620.2 25.366 205 137 6 26 221 36 233 9.12e-14 71.6
Msa0303200 AT4G39620.1 25.366 205 137 6 26 221 36 233 1.13e-13 71.6
Msa0303200 AT1G62350.1 27.160 162 109 2 53 211 1 156 1.67e-13 68.2
Msa0303200 AT1G62350.2 27.160 162 109 2 53 211 57 212 3.65e-13 68.2
Msa0303200 AT3G18110.1 27.717 184 123 3 117 291 743 925 1.17e-11 65.9
Msa0303200 AT3G04760.1 29.054 148 98 2 86 230 189 332 6.26e-11 63.2
Msa0303200 AT3G53170.2 27.805 205 128 6 18 218 49 237 8.28e-11 62.8
Msa0303200 AT3G53170.1 27.805 205 128 6 18 218 49 237 8.28e-11 62.8
Msa0303200 AT3G53170.3 27.805 205 128 6 18 218 49 237 8.77e-11 62.8

Find 72 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAACTTGAACGCTTTCTT+TGG 0.235310 2_3:+60361933 None:intergenic
ATGAAGGAAGATTGTGATTT+GGG 0.290404 2_3:+60362161 None:intergenic
ACTTTCTGAACAAATTTATC+AGG 0.290581 2_3:+60360425 None:intergenic
GCTTCTTCTGTTGTTGTTGT+TGG 0.303251 2_3:+60362023 None:intergenic
TACAGATCCATGAAGGCTTC+AGG 0.306225 2_3:-60360560 Msa0303200:CDS
TCATTGAACAACCTCGTATC+TGG 0.321501 2_3:+60360635 None:intergenic
TTCAATCGGGTGGTTGAAAC+TGG 0.331042 2_3:-60359339 Msa0303200:CDS
AATGAAGGAAGATTGTGATT+TGG 0.342371 2_3:+60362160 None:intergenic
CAAACACCCTGAAGCCTTCA+TGG 0.358156 2_3:+60360553 None:intergenic
TTGGTGGTGGTTGAATTTGA+GGG 0.360715 2_3:+60362042 None:intergenic
ATTAGGAATCTAATGAATAA+TGG 0.372286 2_3:-60360503 Msa0303200:CDS
TGACATTCACGATACTGATT+AGG 0.383930 2_3:-60360520 Msa0303200:CDS
TTCTGACACTATATTGTTGC+TGG 0.386533 2_3:-60360723 Msa0303200:CDS
TTCAATCAAGTTGTGGAAAA+GGG 0.393035 2_3:-60360665 Msa0303200:CDS
GAAGGCTTCAGGGTGTTTGC+CGG 0.397835 2_3:-60360549 Msa0303200:CDS
TCTTTGGAAATTACCATTGA+AGG 0.404903 2_3:+60361949 None:intergenic
GGTTGTTCAATGAGATGATC+GGG 0.409297 2_3:-60360625 Msa0303200:CDS
GCCAAGACAATTAAAACATC+AGG 0.410998 2_3:+60361832 None:intergenic
GTTCAATCAAGTTGTGGAAA+AGG 0.412536 2_3:-60360666 Msa0303200:CDS
AGGAAGCTGGGTATGATAAA+TGG 0.414897 2_3:-60360760 Msa0303200:CDS
GTTGGTGGTGGTTGAATTTG+AGG 0.433884 2_3:+60362041 None:intergenic
TCTTCTGTTGTTGTTGTTGG+TGG 0.444947 2_3:+60362026 None:intergenic
TTATTTGCAAGTTGGTAATA+CGG 0.445470 2_3:-60360600 Msa0303200:CDS
AAACAAGAAACCACCTTCAA+TGG 0.451723 2_3:-60361962 Msa0303200:CDS
TTCTCAAGTCTAAATTGCTT+AGG 0.453872 2_3:-60361864 Msa0303200:CDS
GCAATTTAGACTTGAGAACT+TGG 0.462867 2_3:+60361869 None:intergenic
TCTGTTGTTGTTGTTGGTGG+TGG 0.470519 2_3:+60362029 None:intergenic
GAAAACTCACATGTTTCAGC+TGG 0.472944 2_3:+60360402 None:intergenic
GTGGTGGTTGAATTTGAGGG+TGG 0.473830 2_3:+60362045 None:intergenic
ACAGATCCATGAAGGCTTCA+GGG 0.478380 2_3:-60360559 Msa0303200:CDS
AGCAGGATATGATACATTGC+TGG 0.484807 2_3:-60359430 Msa0303200:CDS
ATCATCAGTGATGAGGAAGC+TGG 0.489732 2_3:-60360773 Msa0303200:CDS
ATCGTGAATGTCAATGAATC+CGG 0.495421 2_3:+60360530 None:intergenic
TGGCAGAAGAGATGTTCAAT+CGG 0.498409 2_3:-60359353 Msa0303200:CDS
ATCGGGGTTTATTTGCAAGT+TGG 0.501108 2_3:-60360608 Msa0303200:CDS
GAATAATGGAGAACATGAAC+TGG 0.504471 2_3:-60360489 Msa0303200:CDS
TATGACATGATACTGTTGTT+GGG 0.516517 2_3:-60359396 Msa0303200:CDS
TTATGACATGATACTGTTGT+TGG 0.521457 2_3:-60359397 Msa0303200:CDS
TGGTGGTTGAATTTGAGGGT+GGG 0.523618 2_3:+60362046 None:intergenic
ATTATTAGTGATGAGGAAGC+AGG 0.523985 2_3:-60359447 Msa0303200:CDS
GTTTGAAATATCCATGCGCT+TGG 0.525505 2_3:+60362081 None:intergenic
CCTTGAGAGATAAATGGAGT+TGG 0.528634 2_3:+60361791 None:intergenic
AGAGCTTATTATTAGTGATG+AGG 0.540145 2_3:-60359454 Msa0303200:CDS
AGGTTGTTCAATGAGATGAT+CGG 0.544532 2_3:-60360626 Msa0303200:CDS
GGCAGAAGAGATGTTCAATC+GGG 0.546816 2_3:-60359352 Msa0303200:CDS
TCTGACACTATATTGTTGCT+GGG 0.554494 2_3:-60360722 Msa0303200:CDS
CCAACTCCATTTATCTCTCA+AGG 0.557133 2_3:-60361791 Msa0303200:intron
TGGTAATACGGAGAAGGCGA+TGG 0.560110 2_3:-60360588 Msa0303200:CDS
GAGCGTGTTCAGTTGAATGA+AGG 0.565936 2_3:+60362145 None:intergenic
AAGCGCATGGATATTTCAAA+CGG 0.566841 2_3:-60362079 Msa0303200:CDS
GCAAGTTGGTAATACGGAGA+AGG 0.574234 2_3:-60360594 Msa0303200:CDS
CGAGTTTATCATCAGTGATG+AGG 0.580481 2_3:-60360780 Msa0303200:CDS
TCATCAGTGATGAGGAAGCT+GGG 0.584407 2_3:-60360772 Msa0303200:CDS
AGAGATGTTCAATCAAGTTG+TGG 0.585094 2_3:-60360672 Msa0303200:CDS
GGAGGTTTACAGATCCATGA+AGG 0.589588 2_3:-60360567 Msa0303200:CDS
TCAATCAAGTTGTGGAAAAG+GGG 0.591104 2_3:-60360664 Msa0303200:CDS
TTGGAAATTACCATTGAAGG+TGG 0.592079 2_3:+60361952 None:intergenic
AAAGAACAAGATGATTGAGA+TGG 0.594568 2_3:-60360699 Msa0303200:CDS
GAACAAGATGATTGAGATGG+CGG 0.602226 2_3:-60360696 Msa0303200:CDS
TGATACTAAGACCAAGCGCA+TGG 0.605391 2_3:-60362092 Msa0303200:CDS
GAAGGAAGATTGTGATTTGG+GGG 0.611317 2_3:+60362163 None:intergenic
AAGGAACAAGATGATTGAGA+TGG 0.616432 2_3:-60359373 Msa0303200:CDS
AGAAGAGATGTTCAATCGGG+TGG 0.626222 2_3:-60359349 Msa0303200:CDS
ACATGATACTGTTGTTGGGA+AGG 0.641698 2_3:-60359392 Msa0303200:CDS
TAATACGGAGAAGGCGATGG+AGG 0.641911 2_3:-60360585 Msa0303200:CDS
GATGAAAATTGAAGTAGCAG+CGG 0.652533 2_3:+60362123 None:intergenic
TGAAGGAAGATTGTGATTTG+GGG 0.654826 2_3:+60362162 None:intergenic
AATATAGTGTCAGAATACAA+TGG 0.656425 2_3:+60360731 None:intergenic
GTTGTTCAATGAGATGATCG+GGG 0.665655 2_3:-60360624 Msa0303200:CDS
AAAGCAACAACAGTAGTATG+CGG 0.695765 2_3:-60362000 Msa0303200:CDS
GGTGGTTGAAACTGGAAACG+AGG 0.718348 2_3:-60359331 Msa0303200:CDS
AGGGGTTGAAACCAGATACG+AGG 0.767064 2_3:-60360646 Msa0303200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACTTATATGAAAATTATA+TGG - chr2_3:60359969-60359988 Msa0303200:intron 10.0%
!! ATAAGATAATAGTTTGATAT+TGG + chr2_3:60360087-60360106 None:intergenic 15.0%
!! ATTGAATATTAATAACAATG+AGG - chr2_3:60361610-60361629 Msa0303200:intron 15.0%
!!! TTTCAATTATATTGATGATT+TGG + chr2_3:60361827-60361846 None:intergenic 15.0%
!!! GCTTTTTTCATAAATTATTC+TGG - chr2_3:60360116-60360135 Msa0303200:intron 20.0%
!!! GATATCATTTTCTATAAGAA+CGG + chr2_3:60360313-60360332 None:intergenic 20.0%
!! ATTAGGAATCTAATGAATAA+TGG - chr2_3:60361020-60361039 Msa0303200:intron 20.0%
!!! ATGTGAGTTTTCAAATTTTA+TGG - chr2_3:60361132-60361151 Msa0303200:intron 20.0%
!!! TGATTTTTTAAGTGACATTT+TGG - chr2_3:60361189-60361208 Msa0303200:intron 20.0%
!! AATATTAATAACAATGAGGA+AGG - chr2_3:60361614-60361633 Msa0303200:intron 20.0%
!! ATATTAATAACAATGAGGAA+GGG - chr2_3:60361615-60361634 Msa0303200:intron 20.0%
!! ACAATTTGAGAAAATACAAA+TGG + chr2_3:60361911-60361930 None:intergenic 20.0%
!!! GTATTTTCTCAAATTGTTTT+TGG - chr2_3:60361914-60361933 Msa0303200:CDS 20.0%
!! TTCATTATTAATTGAAGCAT+AGG - chr2_3:60362042-60362061 Msa0303200:CDS 20.0%
!! TTTTTACCTTGAGAGATAAA+TGG + chr2_3:60359741-60359760 None:intergenic 25.0%
!!! TTGTTTCTAATAAGCTATCT+AGG - chr2_3:60359921-60359940 Msa0303200:intron 25.0%
!!! ACTGTTTTCTCTAGTTTTTT+TGG - chr2_3:60360185-60360204 Msa0303200:intron 25.0%
! GCTAGAAAATTATTTCATCT+AGG - chr2_3:60360366-60360385 Msa0303200:intron 25.0%
! AATAATTTGATCGTAGTTGA+AGG - chr2_3:60360411-60360430 Msa0303200:intron 25.0%
! GATTAAAGGTCTTAAGAATT+AGG - chr2_3:60360473-60360492 Msa0303200:CDS 25.0%
!!! CTATTTTCTCAAAGTATTAC+CGG - chr2_3:60360553-60360572 Msa0303200:CDS 25.0%
! TAGTTAGAATTATTAGCTAC+TGG + chr2_3:60360665-60360684 None:intergenic 25.0%
!! GCATTTGATAATTGTAACAT+AGG - chr2_3:60360716-60360735 Msa0303200:CDS 25.0%
! AATATAGTGTCAGAATACAA+TGG + chr2_3:60360795-60360814 None:intergenic 25.0%
!!! TTATTTGCAAGTTGGTAATA+CGG - chr2_3:60360923-60360942 Msa0303200:intron 25.0%
! ACTTTCTGAACAAATTTATC+AGG + chr2_3:60361101-60361120 None:intergenic 25.0%
! CAACAAGCATAAAAGTAATT+TGG + chr2_3:60361456-60361475 None:intergenic 25.0%
!!! CAAATTACTTTTATGCTTGT+TGG - chr2_3:60361454-60361473 Msa0303200:intron 25.0%
! AGTACAAATGATCTTATCAA+CGG + chr2_3:60361585-60361604 None:intergenic 25.0%
! TTTCCTTATTGCGAAAATAA+TGG - chr2_3:60361675-60361694 Msa0303200:intron 25.0%
ATGAAGGAAGATTGTGATTT+GGG + chr2_3:60359365-60359384 None:intergenic 30.0%
AATGAAGGAAGATTGTGATT+TGG + chr2_3:60359366-60359385 None:intergenic 30.0%
!!! GTTTCTTGTTTTTGCATGAA+CGG + chr2_3:60359552-60359571 None:intergenic 30.0%
! TCTTTGGAAATTACCATTGA+AGG + chr2_3:60359577-60359596 None:intergenic 30.0%
AATAACTTGAACGCTTTCTT+TGG + chr2_3:60359593-60359612 None:intergenic 30.0%
! AACTTGGTTGAGTTTTTCTT+CGG + chr2_3:60359641-60359660 None:intergenic 30.0%
TTCTCAAGTCTAAATTGCTT+AGG - chr2_3:60359659-60359678 Msa0303200:intron 30.0%
ATCACAATTAAAACCCTGTT+TGG - chr2_3:60359760-60359779 Msa0303200:intron 30.0%
ATTAAAACCCTGTTTGGTTA+AGG - chr2_3:60359766-60359785 Msa0303200:intron 30.0%
ACAAGTTGCAAACAACTTAT+AGG + chr2_3:60359905-60359924 None:intergenic 30.0%
TTCTAATAAGCTATCTAGGA+CGG - chr2_3:60359925-60359944 Msa0303200:intron 30.0%
!! ATATTGGCTTTGTTTGGAAT+TGG + chr2_3:60360071-60360090 None:intergenic 30.0%
!! AGTTTGATATTGGCTTTGTT+TGG + chr2_3:60360077-60360096 None:intergenic 30.0%
AATAAGCTGAAAACTACTCA+CGG - chr2_3:60360151-60360170 Msa0303200:intron 30.0%
GTTAGTCACTAGTGTAATTT+GGG + chr2_3:60360267-60360286 None:intergenic 30.0%
AGTTAGTCACTAGTGTAATT+TGG + chr2_3:60360268-60360287 None:intergenic 30.0%
CAACAGAACTTCTAATTAGT+TGG + chr2_3:60360335-60360354 None:intergenic 30.0%
! ACCTTTAATCTTTCAAGTGT+CGG + chr2_3:60360463-60360482 None:intergenic 30.0%
GTCTTAAGAATTAGGATTGA+AGG - chr2_3:60360481-60360500 Msa0303200:CDS 30.0%
! CGGTAATACTTTGAGAAAAT+AGG + chr2_3:60360555-60360574 None:intergenic 30.0%
AAAGAACAAGATGATTGAGA+TGG - chr2_3:60360824-60360843 Msa0303200:intron 30.0%
! TTCAATCAAGTTGTGGAAAA+GGG - chr2_3:60360858-60360877 Msa0303200:intron 30.0%
TAAACTTGTAGTGTCTTGTA+TGG - chr2_3:60361242-60361261 Msa0303200:intron 30.0%
AAACTTGTAGTGTCTTGTAT+GGG - chr2_3:60361243-60361262 Msa0303200:intron 30.0%
ATCTAATTTCCTGCATTTGA+TGG - chr2_3:60361345-60361364 Msa0303200:intron 30.0%
TCTAATTTCCTGCATTTGAT+GGG - chr2_3:60361346-60361365 Msa0303200:intron 30.0%
! TTCATTTTCATCATTGCTAC+TGG - chr2_3:60361385-60361404 Msa0303200:intron 30.0%
!! ATTACTTTTATGCTTGTTGG+CGG - chr2_3:60361457-60361476 Msa0303200:intron 30.0%
TACATCAATACAACCGAAAT+TGG + chr2_3:60361489-60361508 None:intergenic 30.0%
TGAATGTGATAGGTACTAAT+TGG - chr2_3:60361514-60361533 Msa0303200:intron 30.0%
AGCATCACTAGTATATAGAT+TGG + chr2_3:60361559-60361578 None:intergenic 30.0%
! ACACCATTATTTTCGCAATA+AGG + chr2_3:60361681-60361700 None:intergenic 30.0%
!! TAATGGTGTAGAATTTTAGC+TGG - chr2_3:60361692-60361711 Msa0303200:intron 30.0%
GAGAAAATACAAATGGTTGA+AGG + chr2_3:60361904-60361923 None:intergenic 30.0%
AGAGCTTATTATTAGTGATG+AGG - chr2_3:60362069-60362088 Msa0303200:CDS 30.0%
TTATGACATGATACTGTTGT+TGG - chr2_3:60362126-60362145 Msa0303200:five_prime_UTR 30.0%
TATGACATGATACTGTTGTT+GGG - chr2_3:60362127-60362146 Msa0303200:five_prime_UTR 30.0%
TGAAGGAAGATTGTGATTTG+GGG + chr2_3:60359364-60359383 None:intergenic 35.0%
GATGAAAATTGAAGTAGCAG+CGG + chr2_3:60359403-60359422 None:intergenic 35.0%
AAGCGCATGGATATTTCAAA+CGG - chr2_3:60359444-60359463 Msa0303200:CDS 35.0%
AAAGCAACAACAGTAGTATG+CGG - chr2_3:60359523-60359542 Msa0303200:intron 35.0%
AAACAAGAAACCACCTTCAA+TGG - chr2_3:60359561-60359580 Msa0303200:intron 35.0%
TTGGAAATTACCATTGAAGG+TGG + chr2_3:60359574-60359593 None:intergenic 35.0%
GCAATTTAGACTTGAGAACT+TGG + chr2_3:60359657-60359676 None:intergenic 35.0%
!!! GCCTGATGTTTTAATTGTCT+TGG - chr2_3:60359690-60359709 Msa0303200:intron 35.0%
GCCAAGACAATTAAAACATC+AGG + chr2_3:60359694-60359713 None:intergenic 35.0%
GCTTAAACCTTAACCAAACA+GGG + chr2_3:60359776-60359795 None:intergenic 35.0%
TGCTTAAACCTTAACCAAAC+AGG + chr2_3:60359777-60359796 None:intergenic 35.0%
GAAGGATATTAACCTGTATG+TGG - chr2_3:60360429-60360448 Msa0303200:CDS 35.0%
ACCGACACTTGAAAGATTAA+AGG - chr2_3:60360459-60360478 Msa0303200:CDS 35.0%
! ATTAGGATTGAAGGTGTGTT+TGG - chr2_3:60360490-60360509 Msa0303200:CDS 35.0%
GAGAAAATAGGAATGATCGA+AGG + chr2_3:60360543-60360562 None:intergenic 35.0%
TATTACCGGTGTTTATGTGT+GGG - chr2_3:60360567-60360586 Msa0303200:CDS 35.0%
TTCTGACACTATATTGTTGC+TGG - chr2_3:60360800-60360819 Msa0303200:intron 35.0%
TCTGACACTATATTGTTGCT+GGG - chr2_3:60360801-60360820 Msa0303200:intron 35.0%
! AGAGATGTTCAATCAAGTTG+TGG - chr2_3:60360851-60360870 Msa0303200:intron 35.0%
! GTTCAATCAAGTTGTGGAAA+AGG - chr2_3:60360857-60360876 Msa0303200:intron 35.0%
! TCAATCAAGTTGTGGAAAAG+GGG - chr2_3:60360859-60360878 Msa0303200:intron 35.0%
AGGTTGTTCAATGAGATGAT+CGG - chr2_3:60360897-60360916 Msa0303200:intron 35.0%
ATCGTGAATGTCAATGAATC+CGG + chr2_3:60360996-60361015 None:intergenic 35.0%
! TGACATTCACGATACTGATT+AGG - chr2_3:60361003-60361022 Msa0303200:intron 35.0%
! GAATAATGGAGAACATGAAC+TGG - chr2_3:60361034-60361053 Msa0303200:intron 35.0%
CAAGTACGTCACAAACTATA+AGG + chr2_3:60361222-60361241 None:intergenic 35.0%
!!! AGATTGACGTGTCTCTTTTT+TGG + chr2_3:60361321-60361340 None:intergenic 35.0%
AAAAAAGAGACACGTCAATC+TGG - chr2_3:60361320-60361339 Msa0303200:intron 35.0%
CTAATTTCCTGCATTTGATG+GGG - chr2_3:60361347-60361366 Msa0303200:intron 35.0%
! ATTTTCATCATTGCTACTGG+AGG - chr2_3:60361388-60361407 Msa0303200:intron 35.0%
GAAATTGTAGCTCAAATGTC+TGG + chr2_3:60361434-60361453 None:intergenic 35.0%
ATGTAGTGTGTGAATGTGAT+AGG - chr2_3:60361504-60361523 Msa0303200:intron 35.0%
! AATTGGCATGGTTAGTTAGT+TGG - chr2_3:60361531-60361550 Msa0303200:intron 35.0%
ATTATTAGTGATGAGGAAGC+AGG - chr2_3:60362076-60362095 Msa0303200:CDS 35.0%
AAGGAACAAGATGATTGAGA+TGG - chr2_3:60362150-60362169 Msa0303200:five_prime_UTR 35.0%
! GAAGGAAGATTGTGATTTGG+GGG + chr2_3:60359363-60359382 None:intergenic 40.0%
! GTTTGAAATATCCATGCGCT+TGG + chr2_3:60359445-60359464 None:intergenic 40.0%
!! TTGGTGGTGGTTGAATTTGA+GGG + chr2_3:60359484-60359503 None:intergenic 40.0%
! TCTTCTGTTGTTGTTGTTGG+TGG + chr2_3:60359500-60359519 None:intergenic 40.0%
! GCTTCTTCTGTTGTTGTTGT+TGG + chr2_3:60359503-60359522 None:intergenic 40.0%
!!! TCTTGTTTTTGCATGAACGG+AGG + chr2_3:60359549-60359568 None:intergenic 40.0%
CCTTGAGAGATAAATGGAGT+TGG + chr2_3:60359735-60359754 None:intergenic 40.0%
CCAACTCCATTTATCTCTCA+AGG - chr2_3:60359732-60359751 Msa0303200:intron 40.0%
TATTAACCTGTATGTGGCAG+TGG - chr2_3:60360435-60360454 Msa0303200:CDS 40.0%
GTATTACCGGTGTTTATGTG+TGG - chr2_3:60360566-60360585 Msa0303200:CDS 40.0%
TGATACCCACACATAAACAC+CGG + chr2_3:60360575-60360594 None:intergenic 40.0%
CGAGTTTATCATCAGTGATG+AGG - chr2_3:60360743-60360762 Msa0303200:CDS 40.0%
AGGAAGCTGGGTATGATAAA+TGG - chr2_3:60360763-60360782 Msa0303200:CDS 40.0%
GAACAAGATGATTGAGATGG+CGG - chr2_3:60360827-60360846 Msa0303200:intron 40.0%
TCATTGAACAACCTCGTATC+TGG + chr2_3:60360891-60360910 None:intergenic 40.0%
GGTTGTTCAATGAGATGATC+GGG - chr2_3:60360898-60360917 Msa0303200:intron 40.0%
GTTGTTCAATGAGATGATCG+GGG - chr2_3:60360899-60360918 Msa0303200:intron 40.0%
ATCGGGGTTTATTTGCAAGT+TGG - chr2_3:60360915-60360934 Msa0303200:intron 40.0%
GAAAACTCACATGTTTCAGC+TGG + chr2_3:60361124-60361143 None:intergenic 40.0%
GTCTTGTATGGGAAGAGTAA+TGG - chr2_3:60361254-60361273 Msa0303200:intron 40.0%
GTGATAGGTACTAATTGGCA+TGG - chr2_3:60361519-60361538 Msa0303200:intron 40.0%
AACTGCAAATGTACACAGAC+AGG + chr2_3:60361755-60361774 None:intergenic 40.0%
! TTGGTGTTTATGTGCCGATA+TGG - chr2_3:60361933-60361952 Msa0303200:CDS 40.0%
! TTATGTGCCGATATGGTGTA+TGG - chr2_3:60361940-60361959 Msa0303200:CDS 40.0%
! GTGAAGCATTAACACATACC+TGG + chr2_3:60361969-60361988 None:intergenic 40.0%
! GACTTAGAGTGATTAGCTAC+TGG + chr2_3:60362011-60362030 None:intergenic 40.0%
AGCAGGATATGATACATTGC+TGG - chr2_3:60362093-60362112 Msa0303200:CDS 40.0%
ACATGATACTGTTGTTGGGA+AGG - chr2_3:60362131-60362150 Msa0303200:five_prime_UTR 40.0%
TGGCAGAAGAGATGTTCAAT+CGG - chr2_3:60362170-60362189 Msa0303200:five_prime_UTR 40.0%
ATTTGGGGGAAGAGAGGTTT+CGG + chr2_3:60359349-60359368 None:intergenic 45.0%
! ATTGTGATTTGGGGGAAGAG+AGG + chr2_3:60359355-60359374 None:intergenic 45.0%
GAGCGTGTTCAGTTGAATGA+AGG + chr2_3:60359381-60359400 None:intergenic 45.0%
TGATACTAAGACCAAGCGCA+TGG - chr2_3:60359431-60359450 Msa0303200:CDS 45.0%
TGGTGGTTGAATTTGAGGGT+GGG + chr2_3:60359480-60359499 None:intergenic 45.0%
!! GTTGGTGGTGGTTGAATTTG+AGG + chr2_3:60359485-60359504 None:intergenic 45.0%
! TCTGTTGTTGTTGTTGGTGG+TGG + chr2_3:60359497-60359516 None:intergenic 45.0%
ATCATCAGTGATGAGGAAGC+TGG - chr2_3:60360750-60360769 Msa0303200:CDS 45.0%
TCATCAGTGATGAGGAAGCT+GGG - chr2_3:60360751-60360770 Msa0303200:CDS 45.0%
!! GCAAGTTGGTAATACGGAGA+AGG - chr2_3:60360929-60360948 Msa0303200:intron 45.0%
GGAGGTTTACAGATCCATGA+AGG - chr2_3:60360956-60360975 Msa0303200:intron 45.0%
TACAGATCCATGAAGGCTTC+AGG - chr2_3:60360963-60360982 Msa0303200:intron 45.0%
ACAGATCCATGAAGGCTTCA+GGG - chr2_3:60360964-60360983 Msa0303200:intron 45.0%
AGTAGAACCCCATCAAATGC+AGG + chr2_3:60361357-60361376 None:intergenic 45.0%
TACTGGAGGAGATTCACACT+GGG - chr2_3:60361402-60361421 Msa0303200:intron 45.0%
AAATGTCTCCTAACTCCCAC+TGG - chr2_3:60361850-60361869 Msa0303200:CDS 45.0%
TGTCTTCGTCAAACACCAGT+GGG + chr2_3:60361868-60361887 None:intergenic 45.0%
CTGGACACCATACACCATAT+CGG + chr2_3:60361950-60361969 None:intergenic 45.0%
GGCAGAAGAGATGTTCAATC+GGG - chr2_3:60362171-60362190 Msa0303200:five_prime_UTR 45.0%
AGAAGAGATGTTCAATCGGG+TGG - chr2_3:60362174-60362193 Msa0303200:five_prime_UTR 45.0%
TTCAATCGGGTGGTTGAAAC+TGG - chr2_3:60362184-60362203 Msa0303200:five_prime_UTR 45.0%
!! AAAATTAAAATGAAAAAATA+AGG + chr2_3:60360696-60360715 None:intergenic 5.0%
GTGGTGGTTGAATTTGAGGG+TGG + chr2_3:60359481-60359500 None:intergenic 50.0%
AGGGGTTGAAACCAGATACG+AGG - chr2_3:60360877-60360896 Msa0303200:intron 50.0%
TGGTAATACGGAGAAGGCGA+TGG - chr2_3:60360935-60360954 Msa0303200:intron 50.0%
TAATACGGAGAAGGCGATGG+AGG - chr2_3:60360938-60360957 Msa0303200:intron 50.0%
CAAACACCCTGAAGCCTTCA+TGG + chr2_3:60360973-60360992 None:intergenic 50.0%
CTACTGGAGGAGATTCACAC+TGG - chr2_3:60361401-60361420 Msa0303200:intron 50.0%
GTCAAACACCAGTGGGAGTT+AGG + chr2_3:60361861-60361880 None:intergenic 50.0%
GTGTCTTCGTCAAACACCAG+TGG + chr2_3:60361869-60361888 None:intergenic 50.0%
CGATATGGTGTATGGTGTCC+AGG - chr2_3:60361948-60361967 Msa0303200:CDS 50.0%
GGTGGTTGAAACTGGAAACG+AGG - chr2_3:60362192-60362211 Msa0303200:five_prime_UTR 50.0%
TCGGTACCACTGCCACATAC+AGG + chr2_3:60360444-60360463 None:intergenic 55.0%
! GAAGGCTTCAGGGTGTTTGC+CGG - chr2_3:60360974-60360993 Msa0303200:intron 55.0%
TTGGCGGCGACTGCCAATTT+CGG - chr2_3:60361473-60361492 Msa0303200:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 60359320 60362225 60359320 ID=Msa0303200;Name=Msa0303200
chr2_3 mRNA 60359320 60362225 60359320 ID=Msa0303200-mRNA-1;Parent=Msa0303200;Name=Msa0303200-mRNA-1;_AED=0.26;_eAED=0.26;_QI=110|0.5|0.66|1|1|1|3|0|293
chr2_3 exon 60359320 60359481 60359320 ID=Msa0303200-mRNA-1:exon:19673;Parent=Msa0303200-mRNA-1
chr2_3 exon 60360412 60360807 60360412 ID=Msa0303200-mRNA-1:exon:19672;Parent=Msa0303200-mRNA-1
chr2_3 exon 60361792 60362225 60361792 ID=Msa0303200-mRNA-1:exon:19671;Parent=Msa0303200-mRNA-1
chr2_3 five_prime_UTR 60362116 60362225 60362116 ID=Msa0303200-mRNA-1:five_prime_utr;Parent=Msa0303200-mRNA-1
chr2_3 CDS 60361792 60362115 60361792 ID=Msa0303200-mRNA-1:cds;Parent=Msa0303200-mRNA-1
chr2_3 CDS 60360412 60360807 60360412 ID=Msa0303200-mRNA-1:cds;Parent=Msa0303200-mRNA-1
chr2_3 CDS 60359320 60359481 60359320 ID=Msa0303200-mRNA-1:cds;Parent=Msa0303200-mRNA-1
Gene Sequence

>Msa0303200

ATGATACTAAGACCAAGCGCATGGATATTTCAAACGGAATTGCTTTTCCCACCCTCAAATTCAACCACCACCAACAACAACAACAGAAGAAGCAAAGCAACAACAGTAGTATGCGGCCTCCGTTCATGCAAAAACAAGAAACCACCTTCAATGGTAATTTCCAAAGAAAGCGTTCAAGTTATTCACGCTCTCAAACTCGCTAAAAATTCCGAAGAAAAACTCAACCAAGTTCTCAAGTCTAAATTGCTTAGGTTATTGAAGCCTGATGTTTTAATTGTCTTGGCTGAATTGCATAGACAAAACCAACTCCATTTATCTCTCAAGGTTTTCGAGTTTATCATCAGTGATGAGGAAGCTGGGTATGATAAATGGCTGCTGCCATTGTATTCTGACACTATATTGTTGCTGGGAAAGAACAAGATGATTGAGATGGCGGAAGAGATGTTCAATCAAGTTGTGGAAAAGGGGTTGAAACCAGATACGAGGTTGTTCAATGAGATGATCGGGGTTTATTTGCAAGTTGGTAATACGGAGAAGGCGATGGAGGTTTACAGATCCATGAAGGCTTCAGGGTGTTTGCCGGATTCATTGACATTCACGATACTGATTAGGAATCTAATGAATAATGGAGAACATGAACTGGTTGAAACTTTGAAAAAAGAGAGTTTTGACTATGTCAATAAACCTGATAAATTTGTTCAGAAAGTCCAGCTGAAACATGTTTTAGAGCTTATTATTAGTGATGAGGAAGCAGGATATGATACATTGCTGGAACAGTTGTATTATGACATGATACTGTTGTTGGGAAGGAACAAGATGATTGAGATGGCAGAAGAGATGTTCAATCGGGTGGTTGAAACTGGAAACGAGGTTGTTAAATGA

Protein sequence

>Msa0303200

MILRPSAWIFQTELLFPPSNSTTTNNNNRRSKATTVVCGLRSCKNKKPPSMVISKESVQVIHALKLAKNSEEKLNQVLKSKLLRLLKPDVLIVLAELHRQNQLHLSLKVFEFIISDEEAGYDKWLLPLYSDTILLLGKNKMIEMAEEMFNQVVEKGLKPDTRLFNEMIGVYLQVGNTEKAMEVYRSMKASGCLPDSLTFTILIRNLMNNGEHELVETLKKESFDYVNKPDKFVQKVQLKHVLELIISDEEAGYDTLLEQLYYDMILLLGRNKMIEMAEEMFNRVVETGNEVVK*