Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037220 | sp|Q9FLA5|ARAD2_ARATH | 33.198 | 491 | 249 | 10 | 2 | 475 | 3 | 431 | 7.29e-77 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018870 | Msa0037220 | -0.810314 | 1.225641e-50 | -8.615850e-47 |
| Msa0032450 | Msa0037220 | -0.817842 | 2.673286e-52 | -8.615850e-47 |
| Msa0037220 | Msa0085030 | 0.973458 | 1.834415e-136 | -8.615850e-47 |
| Msa0037220 | Msa0129270 | 0.809547 | 1.792517e-50 | -8.615850e-47 |
| Msa0037220 | Msa0132920 | -0.807346 | 5.287074e-50 | -8.615850e-47 |
| Msa0037220 | Msa0177930 | 0.857967 | 1.137354e-62 | -8.615850e-47 |
| Msa0037220 | Msa0190840 | -0.824987 | 5.991564e-54 | -8.615850e-47 |
| Msa0037220 | Msa0224400 | -0.814540 | 1.462677e-51 | -8.615850e-47 |
| Msa0037220 | Msa0225910 | 0.807362 | 5.246255e-50 | -8.615850e-47 |
| Msa0037220 | Msa0290600 | -0.811859 | 5.670290e-51 | -8.615850e-47 |
| Msa0037220 | Msa0303920 | 0.810947 | 8.947560e-51 | -8.615850e-47 |
| Msa0037220 | Msa0378670 | -0.808146 | 3.574957e-50 | -8.615850e-47 |
| Msa0037220 | Msa0378700 | -0.825606 | 4.278150e-54 | -8.615850e-47 |
| Msa0037220 | Msa0379500 | -0.803281 | 3.756576e-49 | -8.615850e-47 |
| Msa0037220 | Msa0417150 | -0.806139 | 9.508306e-50 | -8.615850e-47 |
| Msa0037220 | Msa0428330 | -0.805112 | 1.562431e-49 | -8.615850e-47 |
| Msa0037220 | Msa0481050 | -0.802593 | 5.212856e-49 | -8.615850e-47 |
| Msa0037220 | Msa0495510 | -0.821412 | 4.094767e-53 | -8.615850e-47 |
| Msa0037220 | Msa0500490 | -0.808673 | 2.758646e-50 | -8.615850e-47 |
| Msa0037220 | Msa0534380 | -0.813626 | 2.327594e-51 | -8.615850e-47 |
| Msa0037220 | Msa0548760 | 0.807741 | 4.359583e-50 | -8.615850e-47 |
| Msa0037220 | Msa0554170 | -0.824417 | 8.165702e-54 | -8.615850e-47 |
| Msa0037220 | Msa0638040 | -0.810136 | 1.338862e-50 | -8.615850e-47 |
| Msa0037220 | Msa0679780 | -0.807910 | 4.012840e-50 | -8.615850e-47 |
| Msa0037220 | Msa0682730 | 0.811463 | 6.913674e-51 | -8.615850e-47 |
| Msa0037220 | Msa0697600 | -0.800878 | 1.172160e-48 | -8.615850e-47 |
| Msa0037220 | Msa0716600 | 0.831645 | 1.484675e-55 | -8.615850e-47 |
| Msa0037220 | Msa0758000 | 0.811382 | 7.198033e-51 | -8.615850e-47 |
| Msa0037220 | Msa0776290 | -0.840872 | 6.690912e-58 | -8.615850e-47 |
| Msa0037220 | Msa0813630 | -0.816885 | 4.390339e-52 | -8.615850e-47 |
| Msa0037220 | Msa0848720 | -0.825851 | 3.741099e-54 | -8.615850e-47 |
| Msa0037220 | Msa0899730 | -0.803466 | 3.440495e-49 | -8.615850e-47 |
| Msa0037220 | Msa0932930 | 0.806383 | 8.448156e-50 | -8.615850e-47 |
| Msa0037220 | Msa0964650 | -0.801463 | 8.898400e-49 | -8.615850e-47 |
| Msa0037220 | Msa0986620 | -0.801969 | 7.005846e-49 | -8.615850e-47 |
| Msa0037220 | Msa0997940 | 0.800758 | 1.239968e-48 | -8.615850e-47 |
| Msa0037220 | Msa1030430 | -0.816963 | 4.216876e-52 | -8.615850e-47 |
| Msa0037220 | Msa1036020 | 0.813774 | 2.158729e-51 | -8.615850e-47 |
| Msa0037220 | Msa1040730 | 0.820855 | 5.501770e-53 | -8.615850e-47 |
| Msa0037220 | Msa1053990 | 0.810399 | 1.175313e-50 | -8.615850e-47 |
| Msa0037220 | Msa1061760 | 0.812124 | 4.963578e-51 | -8.615850e-47 |
| Msa0037220 | Msa1069440 | -0.804759 | 1.851478e-49 | -8.615850e-47 |
| Msa0037220 | Msa1096510 | -0.814391 | 1.578203e-51 | -8.615850e-47 |
| Msa0037220 | Msa1096570 | -0.804618 | 1.981366e-49 | -8.615850e-47 |
| Msa0037220 | Msa1122720 | -0.807308 | 5.385087e-50 | -8.615850e-47 |
| Msa0037220 | Msa1127880 | 0.801911 | 7.199846e-49 | -8.615850e-47 |
| Msa0037220 | Msa1211300 | -0.832244 | 1.055934e-55 | -8.615850e-47 |
| Msa0037220 | Msa1211390 | -0.834807 | 2.420905e-56 | -8.615850e-47 |
| Msa0037220 | Msa1212740 | -0.801160 | 1.026604e-48 | -8.615850e-47 |
| Msa0037220 | Msa1219780 | 0.800822 | 1.203459e-48 | -8.615850e-47 |
| Msa0037220 | Msa1222030 | 0.806811 | 6.862996e-50 | -8.615850e-47 |
| Msa0037220 | Msa1245120 | 0.830400 | 2.999769e-55 | -8.615850e-47 |
| Msa0037220 | Msa1266710 | 0.829092 | 6.246582e-55 | -8.615850e-47 |
| Msa0037220 | Msa1335500 | 0.807457 | 5.008545e-50 | -8.615850e-47 |
| Msa0037220 | Msa1336080 | -0.811089 | 8.334353e-51 | -8.615850e-47 |
| Msa0037220 | Msa1349810 | -0.807751 | 4.336964e-50 | -8.615850e-47 |
| Msa0037220 | Msa1359620 | -0.803895 | 2.801816e-49 | -8.615850e-47 |
| Msa0037220 | Msa1370930 | 0.805880 | 1.078147e-49 | -8.615850e-47 |
| Msa0037220 | Msa1389350 | 0.974510 | 2.778083e-138 | -8.615850e-47 |
| Msa0037220 | Msa1396550 | 0.819356 | 1.212417e-52 | -8.615850e-47 |
| Msa0037220 | Msa1403700 | -0.801453 | 8.939775e-49 | -8.615850e-47 |
| Msa0037220 | Msa1407210 | 0.805869 | 1.084078e-49 | -8.615850e-47 |
| Msa0037220 | Msa1408190 | -0.805352 | 1.391735e-49 | -8.615850e-47 |
| Msa0037220 | Msa1413900 | -0.821857 | 3.230768e-53 | -8.615850e-47 |
| Msa0037220 | Msa1448990 | -0.804598 | 2.000016e-49 | -8.615850e-47 |
| Msa0037220 | Msa1449600 | -0.803814 | 2.912306e-49 | -8.615850e-47 |
| Msa0037220 | Msa1451660 | 0.801171 | 1.021259e-48 | -8.615850e-47 |
| Msa0037220 | Msa1456830 | -0.801744 | 7.793241e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037220 | MtrunA17_Chr1g0200871 | 95.021 | 482 | 16 | 1 | 1 | 474 | 1 | 482 | 0.0 | 949 |
| Msa0037220 | MtrunA17_Chr4g0043801 | 36.343 | 432 | 217 | 10 | 54 | 476 | 91 | 473 | 1.67e-84 | 268 |
| Msa0037220 | MtrunA17_Chr3g0122631 | 34.071 | 452 | 242 | 11 | 19 | 462 | 13 | 416 | 2.40e-71 | 232 |
| Msa0037220 | MtrunA17_Chr8g0377331 | 33.913 | 460 | 234 | 12 | 18 | 462 | 10 | 414 | 1.03e-70 | 231 |
| Msa0037220 | MtrunA17_Chr4g0039811 | 34.247 | 438 | 221 | 9 | 50 | 475 | 107 | 489 | 5.43e-70 | 231 |
| Msa0037220 | MtrunA17_Chr3g0092341 | 33.803 | 426 | 220 | 11 | 50 | 462 | 110 | 486 | 4.76e-65 | 218 |
| Msa0037220 | MtrunA17_Chr6g0460631 | 33.803 | 426 | 220 | 14 | 55 | 467 | 113 | 489 | 1.12e-63 | 214 |
| Msa0037220 | MtrunA17_Chr7g0254391 | 32.609 | 414 | 230 | 11 | 55 | 462 | 116 | 486 | 5.26e-59 | 202 |
| Msa0037220 | MtrunA17_Chr3g0140141 | 24.623 | 398 | 230 | 14 | 51 | 424 | 177 | 528 | 2.80e-17 | 84.3 |
| Msa0037220 | MtrunA17_Chr4g0064471 | 29.329 | 283 | 173 | 9 | 145 | 423 | 186 | 445 | 4.57e-17 | 83.6 |
| Msa0037220 | MtrunA17_Chr7g0265381 | 25.625 | 320 | 185 | 12 | 115 | 422 | 70 | 348 | 6.88e-15 | 76.3 |
| Msa0037220 | MtrunA17_Chr3g0140131 | 25.472 | 318 | 188 | 10 | 115 | 422 | 290 | 568 | 1.17e-14 | 76.3 |
| Msa0037220 | MtrunA17_Chr1g0146181 | 25.545 | 321 | 186 | 12 | 115 | 423 | 283 | 562 | 2.08e-14 | 75.5 |
| Msa0037220 | MtrunA17_Chr2g0320251 | 27.835 | 291 | 148 | 12 | 139 | 400 | 131 | 388 | 1.96e-13 | 72.0 |
| Msa0037220 | MtrunA17_Chr4g0064411 | 25.159 | 314 | 201 | 9 | 116 | 423 | 152 | 437 | 2.17e-13 | 72.0 |
| Msa0037220 | MtrunA17_Chr4g0028201 | 25.979 | 281 | 146 | 8 | 139 | 390 | 149 | 396 | 2.79e-13 | 71.6 |
| Msa0037220 | MtrunA17_Chr8g0385651 | 26.132 | 287 | 167 | 9 | 195 | 463 | 142 | 401 | 3.25e-13 | 71.2 |
| Msa0037220 | MtrunA17_Chr1g0159421 | 24.742 | 291 | 189 | 9 | 139 | 422 | 124 | 391 | 4.84e-13 | 70.9 |
| Msa0037220 | MtrunA17_Chr4g0055991 | 25.000 | 324 | 211 | 9 | 105 | 423 | 215 | 511 | 3.09e-12 | 68.6 |
| Msa0037220 | MtrunA17_Chr8g0385671 | 25.087 | 287 | 170 | 9 | 195 | 463 | 142 | 401 | 3.20e-12 | 68.2 |
| Msa0037220 | MtrunA17_Chr5g0411991 | 25.157 | 318 | 182 | 14 | 127 | 424 | 110 | 391 | 6.39e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037220 | AT1G34270.1 | 71.983 | 464 | 125 | 4 | 14 | 475 | 16 | 476 | 0.0 | 697 |
| Msa0037220 | AT5G44930.2 | 33.198 | 491 | 249 | 10 | 2 | 475 | 3 | 431 | 7.42e-78 | 250 |
| Msa0037220 | AT5G44930.1 | 33.198 | 491 | 249 | 10 | 2 | 475 | 3 | 431 | 7.42e-78 | 250 |
| Msa0037220 | AT2G35100.1 | 33.953 | 430 | 231 | 8 | 50 | 475 | 55 | 435 | 1.36e-74 | 242 |
| Msa0037220 | AT1G67410.1 | 32.479 | 468 | 247 | 11 | 14 | 462 | 5 | 422 | 2.24e-72 | 235 |
| Msa0037220 | AT5G44930.3 | 34.217 | 415 | 204 | 9 | 2 | 399 | 3 | 365 | 3.82e-68 | 223 |
| Msa0037220 | AT3G45400.1 | 32.114 | 492 | 264 | 12 | 1 | 462 | 1 | 452 | 3.97e-68 | 226 |
| Msa0037220 | AT5G16890.1 | 33.560 | 441 | 220 | 9 | 50 | 475 | 113 | 495 | 2.98e-66 | 221 |
| Msa0037220 | AT1G74680.1 | 33.494 | 415 | 228 | 12 | 55 | 462 | 75 | 448 | 2.84e-64 | 215 |
| Msa0037220 | AT3G03650.1 | 33.571 | 420 | 235 | 8 | 48 | 462 | 114 | 494 | 3.34e-63 | 213 |
| Msa0037220 | AT1G67410.2 | 27.414 | 321 | 171 | 10 | 14 | 315 | 5 | 282 | 1.29e-25 | 107 |
| Msa0037220 | AT4G32790.1 | 25.153 | 326 | 201 | 12 | 105 | 422 | 278 | 568 | 5.63e-15 | 77.8 |
| Msa0037220 | AT4G32790.3 | 25.153 | 326 | 201 | 12 | 105 | 422 | 278 | 568 | 5.63e-15 | 77.8 |
| Msa0037220 | AT4G32790.2 | 25.153 | 326 | 201 | 12 | 105 | 422 | 278 | 568 | 5.63e-15 | 77.8 |
| Msa0037220 | AT1G21480.1 | 24.490 | 294 | 186 | 9 | 139 | 422 | 139 | 406 | 3.17e-13 | 72.0 |
| Msa0037220 | AT5G20260.1 | 26.538 | 260 | 163 | 7 | 169 | 421 | 68 | 306 | 3.77e-13 | 70.9 |
| Msa0037220 | AT5G20260.3 | 26.538 | 260 | 163 | 7 | 169 | 421 | 95 | 333 | 5.38e-13 | 70.9 |
| Msa0037220 | AT1G63450.1 | 25.159 | 314 | 185 | 13 | 139 | 427 | 352 | 640 | 7.56e-13 | 71.2 |
| Msa0037220 | AT5G20260.2 | 26.336 | 262 | 165 | 7 | 169 | 423 | 200 | 440 | 8.60e-13 | 70.9 |
| Msa0037220 | AT1G21480.2 | 25.600 | 250 | 158 | 7 | 139 | 381 | 139 | 367 | 1.29e-12 | 69.7 |
| Msa0037220 | AT5G33290.1 | 27.070 | 314 | 179 | 14 | 90 | 386 | 159 | 439 | 1.31e-12 | 70.1 |
| Msa0037220 | AT5G19670.1 | 24.916 | 297 | 171 | 12 | 105 | 387 | 292 | 550 | 2.44e-12 | 69.7 |
| Msa0037220 | AT5G19670.2 | 24.916 | 297 | 171 | 12 | 105 | 387 | 292 | 550 | 2.44e-12 | 69.7 |
| Msa0037220 | AT5G61840.1 | 23.837 | 344 | 208 | 12 | 139 | 463 | 92 | 400 | 7.05e-12 | 67.8 |
| Msa0037220 | AT2G28110.1 | 25.000 | 280 | 170 | 7 | 139 | 400 | 138 | 395 | 8.36e-12 | 67.4 |
| Msa0037220 | AT1G27440.1 | 24.912 | 285 | 173 | 8 | 195 | 463 | 138 | 397 | 8.80e-12 | 67.4 |
| Msa0037220 | AT4G16745.2 | 28.495 | 186 | 115 | 5 | 278 | 452 | 367 | 545 | 1.83e-11 | 66.6 |
| Msa0037220 | AT5G11130.2 | 22.781 | 338 | 221 | 11 | 90 | 421 | 2 | 305 | 8.66e-11 | 63.5 |
Find 151 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTCCTTGTTGTGGATTT+TGG | 0.144950 | 1_1:-66189262 | Msa0037220:CDS |
| TTCATCCACTGTTTCATAAT+TGG | 0.146755 | 1_1:-66190783 | Msa0037220:five_prime_UTR |
| GCACTGTACTGTTTGATAAT+TGG | 0.173216 | 1_1:+66190374 | None:intergenic |
| ATCCAGACTTGAATAGATTT+TGG | 0.184572 | 1_1:+66190813 | None:intergenic |
| CAGTTATATGTGTTCATATT+TGG | 0.227529 | 1_1:-66186964 | Msa0037220:three_prime_UTR |
| AAATTCTAAGGCTTTGGTTT+TGG | 0.260702 | 1_1:+66190424 | None:intergenic |
| AAAACACCACCCAACAAATT+TGG | 0.264860 | 1_1:+66186792 | None:intergenic |
| GGAGCATTGTTGTTGTTCTT+TGG | 0.294723 | 1_1:+66190689 | None:intergenic |
| TTCAGTAAATTCTAAGGCTT+TGG | 0.305076 | 1_1:+66190418 | None:intergenic |
| TGGAAATTCAGTAAATTCTA+AGG | 0.317464 | 1_1:+66190412 | None:intergenic |
| TACTGGGTCGTTTGCAAAAC+GGG | 0.327155 | 1_1:-66190306 | Msa0037220:CDS |
| TGCTCTCGCCCAGTCGCATT+AGG | 0.349546 | 1_1:+66187480 | None:intergenic |
| GCTGCACTCGAGCCATGTTT+TGG | 0.351102 | 1_1:+66187202 | None:intergenic |
| TTAACATGCCACATTGCAAC+TGG | 0.357968 | 1_1:+66189304 | None:intergenic |
| GTCTATGATAATGGTCATTC+GGG | 0.367182 | 1_1:-66187171 | Msa0037220:CDS |
| ATCGACGTCGCTGCCGATTC+GGG | 0.368142 | 1_1:+66190460 | None:intergenic |
| CATTTCAGACGAGGTACAAT+TGG | 0.375849 | 1_1:+66189210 | None:intergenic |
| GATCGACGTCGCTGCCGATT+CGG | 0.380542 | 1_1:+66190459 | None:intergenic |
| ATGTTGTCGCTGACAATAAC+AGG | 0.381177 | 1_1:+66187357 | None:intergenic |
| GAGGGCGTAGTTGAGGGATC+TGG | 0.395919 | 1_1:+66190514 | None:intergenic |
| GTCGCTGCCGATTCGGGAAT+CGG | 0.400879 | 1_1:+66190466 | None:intergenic |
| CCCATGTTTGTCTATGATAA+TGG | 0.401139 | 1_1:-66187180 | Msa0037220:CDS |
| ATTTAATTTACCAAATTTGT+TGG | 0.401270 | 1_1:-66186802 | Msa0037220:three_prime_UTR |
| TTGTTGTTGTTCTTTGGAAT+TGG | 0.404241 | 1_1:+66190695 | None:intergenic |
| GAAGAACGTGAGAGAGAGAA+TGG | 0.404972 | 1_1:+66190625 | None:intergenic |
| TTCTAGCATCTTTCATGACT+TGG | 0.405492 | 1_1:-66186844 | Msa0037220:three_prime_UTR |
| TAGTCCACTGTACCTTCAAA+TGG | 0.405969 | 1_1:+66187327 | None:intergenic |
| TATGAGTGCTGAATTGCAAT+TGG | 0.410092 | 1_1:-66190234 | Msa0037220:CDS |
| CACCGACGAAATTGCGTACT+GGG | 0.413292 | 1_1:-66190322 | Msa0037220:CDS |
| TGTCTATGATAATGGTCATT+CGG | 0.417721 | 1_1:-66187172 | Msa0037220:CDS |
| AAGAGTGTGGGAATGGAGAA+TGG | 0.418682 | 1_1:+66190668 | None:intergenic |
| ACGAAAGCATGGAATCGTTC+TGG | 0.418714 | 1_1:-66190128 | Msa0037220:CDS |
| TAGGAAGAAGGTTGGGAATG+AGG | 0.424813 | 1_1:-66190192 | Msa0037220:CDS |
| AATGGTCATTCGGGTGGTAT+TGG | 0.426651 | 1_1:-66187162 | Msa0037220:CDS |
| ATCCAAAATCTATTCAAGTC+TGG | 0.432361 | 1_1:-66190815 | Msa0037220:five_prime_UTR |
| GAAGAGAAAGAGTGTGGGAA+TGG | 0.433432 | 1_1:+66190661 | None:intergenic |
| GCTCTCGCCCAGTCGCATTA+GGG | 0.433894 | 1_1:+66187481 | None:intergenic |
| AACAGTACAGTGCGGAGTAT+TGG | 0.445349 | 1_1:-66190364 | Msa0037220:CDS |
| TTCACCTCCGATTCCCGAAT+CGG | 0.447889 | 1_1:-66190473 | Msa0037220:CDS |
| GTGTGTCCCCAGCCGGATGC+AGG | 0.448189 | 1_1:+66187424 | None:intergenic |
| GAGTGAAGAGTGTGTGGTGG+TGG | 0.454997 | 1_1:+66190586 | None:intergenic |
| AACATAGAGCTCCCATTTGA+AGG | 0.457084 | 1_1:-66187339 | Msa0037220:CDS |
| CAGTGCGGAGTATTGGATCA+TGG | 0.459205 | 1_1:-66190357 | Msa0037220:CDS |
| TACTGAATTTCCACCATACC+CGG | 0.464849 | 1_1:-66190402 | Msa0037220:CDS |
| TTTAATTTACCAAATTTGTT+GGG | 0.465676 | 1_1:-66186801 | Msa0037220:three_prime_UTR |
| TGCAATTGGGTATGGCGAAA+GGG | 0.465853 | 1_1:-66190220 | Msa0037220:CDS |
| TGAAGGACCAGTAGCGGTTG+AGG | 0.466031 | 1_1:+66190492 | None:intergenic |
| AGGGCGTAGTTGAGGGATCT+GGG | 0.470536 | 1_1:+66190515 | None:intergenic |
| ACGCCCTCCTCAACCGCTAC+TGG | 0.470670 | 1_1:-66190499 | Msa0037220:CDS |
| CCCGGCCATTCTCCTTGTTG+TGG | 0.473519 | 1_1:-66189269 | Msa0037220:CDS |
| GAAGGCTTCCCTAATGCGAC+TGG | 0.476447 | 1_1:-66187489 | Msa0037220:CDS |
| ACTGACCCGGTGCCGATGCT+TGG | 0.477951 | 1_1:+66189069 | None:intergenic |
| GATCATGTGTTTGTTGTCAC+TGG | 0.480706 | 1_1:-66190098 | Msa0037220:intron |
| TTGTTGTTCTTTGGAATTGG+AGG | 0.480976 | 1_1:+66190698 | None:intergenic |
| GTTGAGGAGGGCGTAGTTGA+GGG | 0.481287 | 1_1:+66190508 | None:intergenic |
| TCCACAACAAGGAGAATGGC+CGG | 0.488926 | 1_1:+66189268 | None:intergenic |
| TAATGAGCCCGGTGTAATCA+TGG | 0.490173 | 1_1:-66187514 | Msa0037220:CDS |
| AGGTATGCAAAGACTTTGAA+TGG | 0.492570 | 1_1:+66187377 | None:intergenic |
| ACACCGACGAAATTGCGTAC+TGG | 0.493490 | 1_1:-66190323 | Msa0037220:CDS |
| GCCTAGTTAGAGAGAAGTTG+TGG | 0.494386 | 1_1:-66187548 | Msa0037220:CDS |
| AGCCGGATGCAGGCAAAACT+CGG | 0.495250 | 1_1:+66187434 | None:intergenic |
| AGAGTGTGTGGTGGTGGTGT+AGG | 0.496187 | 1_1:+66190592 | None:intergenic |
| TCTCTTCAACCAACCACCTC+CGG | 0.496354 | 1_1:-66190563 | Msa0037220:CDS |
| AAGGAGCCAAGCATCGGCAC+CGG | 0.501263 | 1_1:-66189075 | Msa0037220:CDS |
| TTACAGAAACTTGAGTGTGT+TGG | 0.510748 | 1_1:+66189185 | None:intergenic |
| GAATAAAGTTCCAAAAGAAA+AGG | 0.511233 | 1_1:+66186864 | None:intergenic |
| ATGGTGCAGTGAATCATATA+TGG | 0.511995 | 1_1:-66187125 | Msa0037220:CDS |
| GTACTGGGTCGTTTGCAAAA+CGG | 0.515407 | 1_1:-66190307 | Msa0037220:CDS |
| CACAACCTTCTCTATTTCAA+AGG | 0.517809 | 1_1:-66189094 | Msa0037220:CDS |
| AAAATCCACAACAAGGAGAA+TGG | 0.518213 | 1_1:+66189264 | None:intergenic |
| GGGCGTAGTTGAGGGATCTG+GGG | 0.520812 | 1_1:+66190516 | None:intergenic |
| AGTGCGGAGTATTGGATCAT+GGG | 0.524351 | 1_1:-66190356 | Msa0037220:CDS |
| TTGCAATTGGGTATGGCGAA+AGG | 0.524843 | 1_1:-66190221 | Msa0037220:CDS |
| ATGAGGATTATCAGAGGCAG+AGG | 0.530227 | 1_1:-66190175 | Msa0037220:CDS |
| CCCACAACTTCTCTCTAACT+AGG | 0.532666 | 1_1:+66187547 | None:intergenic |
| AATTTACCAAATTTGTTGGG+TGG | 0.535459 | 1_1:-66186798 | Msa0037220:three_prime_UTR |
| TGGTATTGGCCCTGTACCTA+TGG | 0.536105 | 1_1:-66187148 | Msa0037220:CDS |
| CCACAACAAGGAGAATGGCC+GGG | 0.537997 | 1_1:+66189269 | None:intergenic |
| GTGTGTGGTGGTGGTGTAGG+AGG | 0.538288 | 1_1:+66190595 | None:intergenic |
| ACTGCACCATCCATAGGTAC+AGG | 0.542217 | 1_1:+66187138 | None:intergenic |
| GGGCGAGAGCAATCAATACA+AGG | 0.544501 | 1_1:-66187468 | Msa0037220:CDS |
| AAGAAAACCACCGGGTGTGT+TGG | 0.547239 | 1_1:-66187049 | Msa0037220:CDS |
| GGACCAGTAGCGGTTGAGGA+GGG | 0.548816 | 1_1:+66190496 | None:intergenic |
| AGGAGCCAAGCATCGGCACC+GGG | 0.549166 | 1_1:-66189074 | Msa0037220:intron |
| GTGATGCACTTAAACCAAGC+TGG | 0.550784 | 1_1:-66187275 | Msa0037220:CDS |
| GGTTGAGGAGGGCGTAGTTG+AGG | 0.551139 | 1_1:+66190507 | None:intergenic |
| TCCAAAAGAAAAGGTATGCA+AGG | 0.554405 | 1_1:+66186873 | None:intergenic |
| GTTGAGGGATCTGGGGAGGT+CGG | 0.554405 | 1_1:+66190523 | None:intergenic |
| GATTCGGGAATCGGAGGTGA+AGG | 0.555168 | 1_1:+66190475 | None:intergenic |
| AGTCCACTGTACCTTCAAAT+GGG | 0.555585 | 1_1:+66187328 | None:intergenic |
| CACAACAAGGAGAATGGCCG+GGG | 0.558397 | 1_1:+66189270 | None:intergenic |
| GAAGTGGGTGTGTCCCCAGC+CGG | 0.560502 | 1_1:+66187417 | None:intergenic |
| TGGCTCCTTTGAAATAGAGA+AGG | 0.560562 | 1_1:+66189089 | None:intergenic |
| AGATGATTGACTATCCAGCT+TGG | 0.562713 | 1_1:+66187261 | None:intergenic |
| TCGAGAGAAAAGAAAACCAC+CGG | 0.564673 | 1_1:-66187058 | Msa0037220:CDS |
| TGCTGAATTGCAATTGGGTA+TGG | 0.567949 | 1_1:-66190228 | Msa0037220:CDS |
| TTGTGAAGAAAACGAAAGCA+TGG | 0.572498 | 1_1:-66190139 | Msa0037220:CDS |
| ATGAGTGCTGAATTGCAATT+GGG | 0.572561 | 1_1:-66190233 | Msa0037220:CDS |
| CGGGGTAGAAGATGTGTGTA+CGG | 0.572897 | 1_1:+66189145 | None:intergenic |
| CCTTCCTCCATGATTACACC+GGG | 0.575893 | 1_1:+66187507 | None:intergenic |
| CCTAGTTAGAGAGAAGTTGT+GGG | 0.578078 | 1_1:-66187547 | Msa0037220:CDS |
| GCAATTGGGTATGGCGAAAG+GGG | 0.581075 | 1_1:-66190219 | Msa0037220:CDS |
| AAGAGAGAGTGAAGAGTGTG+TGG | 0.582928 | 1_1:+66190580 | None:intergenic |
| GTAGACGTTGATGCCGGAGG+TGG | 0.584831 | 1_1:+66190550 | None:intergenic |
| ATTGGCCCTGTACCTATGGA+TGG | 0.585292 | 1_1:-66187144 | Msa0037220:CDS |
| TAACATGCCACATTGCAACT+GGG | 0.588615 | 1_1:+66189305 | None:intergenic |
| GCCTTCCTCCATGATTACAC+CGG | 0.589678 | 1_1:+66187506 | None:intergenic |
| AAGGTATGCAAGGATAGTAA+TGG | 0.590252 | 1_1:+66186883 | None:intergenic |
| ATGAAGAAGAGAAAGAGTGT+GGG | 0.590582 | 1_1:+66190656 | None:intergenic |
| TGATTCACTGCACCATCCAT+AGG | 0.590916 | 1_1:+66187132 | None:intergenic |
| AGACACGTTCCGCCAAAACA+TGG | 0.591709 | 1_1:-66187214 | Msa0037220:CDS |
| ACGTTGATGCCGGAGGTGGT+TGG | 0.592173 | 1_1:+66190554 | None:intergenic |
| GATGAAGAAGAGAAAGAGTG+TGG | 0.598357 | 1_1:+66190655 | None:intergenic |
| AAAGCATGGAATCGTTCTGG+TGG | 0.600089 | 1_1:-66190125 | Msa0037220:CDS |
| AGAGAGTGAAGAGTGTGTGG+TGG | 0.602159 | 1_1:+66190583 | None:intergenic |
| CAGCTAAGATTAGCTGACAA+TGG | 0.605858 | 1_1:+66186725 | None:intergenic |
| CGTAGTTGAGGGATCTGGGG+AGG | 0.605945 | 1_1:+66190519 | None:intergenic |
| GGCGACGTAGACGTTGATGC+CGG | 0.610952 | 1_1:+66190544 | None:intergenic |
| ATTTCAAAGGAGCCAAGCAT+CGG | 0.613834 | 1_1:-66189081 | Msa0037220:CDS |
| CCATTATCATAGACAAACAT+GGG | 0.615762 | 1_1:+66187180 | None:intergenic |
| CCCGGTGTAATCATGGAGGA+AGG | 0.618450 | 1_1:-66187507 | Msa0037220:CDS |
| GTTCAGAGATTGCATCACAA+TGG | 0.619410 | 1_1:-66186942 | Msa0037220:three_prime_UTR |
| AGGACCAGTAGCGGTTGAGG+AGG | 0.619629 | 1_1:+66190495 | None:intergenic |
| CGGAGGTGAAGGACCAGTAG+CGG | 0.620085 | 1_1:+66190486 | None:intergenic |
| GTGCGGAGTATTGGATCATG+GGG | 0.622157 | 1_1:-66190355 | Msa0037220:CDS |
| CGTCGTGGAACCAACACACC+CGG | 0.623417 | 1_1:+66187039 | None:intergenic |
| ACCATTATCATAGACAAACA+TGG | 0.626090 | 1_1:+66187179 | None:intergenic |
| TGTTAAAGATGAGATTGCCC+CGG | 0.630173 | 1_1:-66189287 | Msa0037220:CDS |
| AAGGCTTCCCTAATGCGACT+GGG | 0.630631 | 1_1:-66187488 | Msa0037220:CDS |
| GATCTATTGAATAATGAGCC+CGG | 0.632256 | 1_1:-66187525 | Msa0037220:CDS |
| CTGCACCATCCATAGGTACA+GGG | 0.632850 | 1_1:+66187139 | None:intergenic |
| TAAGTACATTGACATCGTCG+TGG | 0.634589 | 1_1:+66187024 | None:intergenic |
| TATGATAATGGTCATTCGGG+TGG | 0.635201 | 1_1:-66187168 | Msa0037220:CDS |
| AAGCATGGAATCGTTCTGGT+GGG | 0.635217 | 1_1:-66190124 | Msa0037220:CDS |
| CGAGAGAAAAGAAAACCACC+GGG | 0.637673 | 1_1:-66187057 | Msa0037220:CDS |
| GCTTTCCAATTATGAAACAG+TGG | 0.647677 | 1_1:+66190778 | None:intergenic |
| GCTGCCGATTCGGGAATCGG+AGG | 0.653431 | 1_1:+66190469 | None:intergenic |
| GGCGAGAGCAATCAATACAA+GGG | 0.664455 | 1_1:-66187467 | Msa0037220:CDS |
| GCTCCCATTTGAAGGTACAG+TGG | 0.671438 | 1_1:-66187331 | Msa0037220:CDS |
| GGATTATCAGAGGCAGAGGG+AGG | 0.675305 | 1_1:-66190171 | Msa0037220:CDS |
| GACGTAGACGTTGATGCCGG+AGG | 0.678769 | 1_1:+66190547 | None:intergenic |
| GACCCAGTACGCAATTTCGT+CGG | 0.680627 | 1_1:+66190320 | None:intergenic |
| TGAGGATTATCAGAGGCAGA+GGG | 0.682411 | 1_1:-66190174 | Msa0037220:CDS |
| GTGTTGGATCATTTCAGACG+AGG | 0.688231 | 1_1:+66189201 | None:intergenic |
| ACCCACCAAAATCCACAACA+AGG | 0.701202 | 1_1:+66189257 | None:intergenic |
| TTGGGAATGAGGATTATCAG+AGG | 0.702859 | 1_1:-66190181 | Msa0037220:CDS |
| CGTGGAACCAACACACCCGG+TGG | 0.714825 | 1_1:+66187042 | None:intergenic |
| TGGCAGACCCAGTTGCAATG+TGG | 0.723564 | 1_1:-66189312 | Msa0037220:intron |
| TGAGCCCGGTGTAATCATGG+AGG | 0.740721 | 1_1:-66187511 | Msa0037220:CDS |
| AATTATCAAACAGTACAGTG+CGG | 0.765872 | 1_1:-66190372 | Msa0037220:CDS |
| TGCGGAGTATTGGATCATGG+GGG | 0.774007 | 1_1:-66190354 | Msa0037220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAGTGATCAAATTTAT+TGG | - | chr1_1:66188504-66188523 | Msa0037220:intron | 15.0% |
| !! | TTTAAGTGATCAAATTTATT+GGG | - | chr1_1:66188505-66188524 | Msa0037220:intron | 15.0% |
| !!! | ATTTTCAAATTTTAAACCAA+CGG | + | chr1_1:66188754-66188773 | None:intergenic | 15.0% |
| !! | AAGTTATAATTATATCAATC+TGG | - | chr1_1:66188927-66188946 | Msa0037220:intron | 15.0% |
| !! | AGTTATAATTATATCAATCT+GGG | - | chr1_1:66188928-66188947 | Msa0037220:intron | 15.0% |
| !! | ATTCCATTAAGTAAATTTAA+AGG | + | chr1_1:66189530-66189549 | None:intergenic | 15.0% |
| !! | ATAATTAAACATTATAGGAT+TGG | + | chr1_1:66189766-66189785 | None:intergenic | 15.0% |
| !!! | ATTTAATTTACCAAATTTGT+TGG | - | chr1_1:66190642-66190661 | Msa0037220:CDS | 15.0% |
| !!! | TTTAATTTACCAAATTTGTT+GGG | - | chr1_1:66190643-66190662 | Msa0037220:CDS | 15.0% |
| !! | AACATATGAACATAACATTT+GGG | + | chr1_1:66187939-66187958 | None:intergenic | 20.0% |
| !!! | CATCTTTTATGACTTATAAT+TGG | - | chr1_1:66188461-66188480 | Msa0037220:intron | 20.0% |
| !!! | TTTTCAAATTTTAAACCAAC+GGG | + | chr1_1:66188753-66188772 | None:intergenic | 20.0% |
| !! | TGATATAATTATAACTTCCT+GGG | + | chr1_1:66188924-66188943 | None:intergenic | 20.0% |
| !! | TTGATATAATTATAACTTCC+TGG | + | chr1_1:66188925-66188944 | None:intergenic | 20.0% |
| !!! | CTAGTGCTTTTTTTTTTTTT+TGG | - | chr1_1:66189181-66189200 | Msa0037220:CDS | 20.0% |
| !! | ACTATGTTAGTAATATATTG+AGG | - | chr1_1:66189494-66189513 | Msa0037220:intron | 20.0% |
| !! | TGACCTTTAAATTTACTTAA+TGG | - | chr1_1:66189524-66189543 | Msa0037220:intron | 20.0% |
| !!! | TTATTGCTTTTTCATGTTTA+AGG | - | chr1_1:66189577-66189596 | Msa0037220:intron | 20.0% |
| !! | ATAGATGCAAAAATTTATGT+AGG | - | chr1_1:66189789-66189808 | Msa0037220:intron | 20.0% |
| !!! | ATTTTTCAGTAAGATTAACA+TGG | + | chr1_1:66189858-66189877 | None:intergenic | 20.0% |
| !! | TGAAAAATTGTTCAAATTAC+AGG | - | chr1_1:66189870-66189889 | Msa0037220:intron | 20.0% |
| !! | GAAAAATTGTTCAAATTACA+GGG | - | chr1_1:66189871-66189890 | Msa0037220:intron | 20.0% |
| ! | TGGAAATTCAGTAAATTCTA+AGG | + | chr1_1:66187035-66187054 | None:intergenic | 25.0% |
| !!! | TGTTTGATAATTGGATTTTC+CGG | + | chr1_1:66187064-66187083 | None:intergenic | 25.0% |
| !!! | AACTTGTTTTGTTACTGTTA+TGG | - | chr1_1:66187400-66187419 | Msa0037220:CDS | 25.0% |
| !!! | CTGTTATGGTTTTGAATTTT+TGG | - | chr1_1:66187414-66187433 | Msa0037220:CDS | 25.0% |
| ! | AACACGTATATGATAAACAA+GGG | + | chr1_1:66187468-66187487 | None:intergenic | 25.0% |
| ! | AAACACGTATATGATAAACA+AGG | + | chr1_1:66187469-66187488 | None:intergenic | 25.0% |
| ! | GTTTATCATATACGTGTTTA+TGG | - | chr1_1:66187470-66187489 | Msa0037220:CDS | 25.0% |
| !!! | ATAAGCTATTTCTACAACAA+AGG | - | chr1_1:66187493-66187512 | Msa0037220:CDS | 25.0% |
| ! | ATTAAGCCGAAAACAATTTA+TGG | - | chr1_1:66187754-66187773 | Msa0037220:intron | 25.0% |
| !! | ACATGTCCATAAATTGTTTT+CGG | + | chr1_1:66187763-66187782 | None:intergenic | 25.0% |
| ! | ACATATGAACATAACATTTG+GGG | + | chr1_1:66187938-66187957 | None:intergenic | 25.0% |
| ! | CAACATATGAACATAACATT+TGG | + | chr1_1:66187940-66187959 | None:intergenic | 25.0% |
| ! | AATTTGATCACTTAAAACCA+TGG | + | chr1_1:66188501-66188520 | None:intergenic | 25.0% |
| !!! | AATAGTTAGGCTTTTGTTTT+GGG | + | chr1_1:66188716-66188735 | None:intergenic | 25.0% |
| ! | ATAAGAGTGATTGAATAGTT+AGG | + | chr1_1:66188729-66188748 | None:intergenic | 25.0% |
| !! | AAGTGATGATTTTTATCTAG+TGG | + | chr1_1:66188806-66188825 | None:intergenic | 25.0% |
| ! | CACTAATACACTATAATCAA+TGG | + | chr1_1:66188833-66188852 | None:intergenic | 25.0% |
| ! | GATATAATTATAACTTCCTG+GGG | + | chr1_1:66188923-66188942 | None:intergenic | 25.0% |
| !! | TTTTCAATGTTATAAGTGTG+TGG | - | chr1_1:66189021-66189040 | Msa0037220:intron | 25.0% |
| ! | CTCTGTAATGTTAAAAAGTA+AGG | + | chr1_1:66189102-66189121 | None:intergenic | 25.0% |
| !!! | AAAAAAGCACTAGTAAACAT+CGG | + | chr1_1:66189174-66189193 | None:intergenic | 25.0% |
| ! | GTTACTCTTTACAAAAGTAA+TGG | - | chr1_1:66189203-66189222 | Msa0037220:CDS | 25.0% |
| ! | TTACAAAAGTAATGGTTCAA+AGG | - | chr1_1:66189211-66189230 | Msa0037220:CDS | 25.0% |
| ! | GTTAGTAATATATTGAGGAT+TGG | - | chr1_1:66189499-66189518 | Msa0037220:intron | 25.0% |
| !!! | ATTCTAGAACATAATGTTGA+TGG | - | chr1_1:66189632-66189651 | Msa0037220:intron | 25.0% |
| !! | TTTTCTTTTCTCTCGAATTA+TGG | + | chr1_1:66190382-66190401 | None:intergenic | 25.0% |
| ! | CAGTTATATGTGTTCATATT+TGG | - | chr1_1:66190480-66190499 | Msa0037220:CDS | 25.0% |
| ! | GAATAAAGTTCCAAAAGAAA+AGG | + | chr1_1:66190583-66190602 | None:intergenic | 25.0% |
| !!! | CAATAATAAGGCTTTTGTTT+TGG | + | chr1_1:66190838-66190857 | None:intergenic | 25.0% |
| ATCCAAAATCTATTCAAGTC+TGG | - | chr1_1:66186629-66186648 | Msa0037220:three_prime_UTR | 30.0% | |
| ! | ATCCAGACTTGAATAGATTT+TGG | + | chr1_1:66186634-66186653 | None:intergenic | 30.0% |
| TTCATCCACTGTTTCATAAT+TGG | - | chr1_1:66186661-66186680 | Msa0037220:three_prime_UTR | 30.0% | |
| !! | TTGTTGTTGTTCTTTGGAAT+TGG | + | chr1_1:66186752-66186771 | None:intergenic | 30.0% |
| !!! | AAATTCTAAGGCTTTGGTTT+TGG | + | chr1_1:66187023-66187042 | None:intergenic | 30.0% |
| !! | TTCAGTAAATTCTAAGGCTT+TGG | + | chr1_1:66187029-66187048 | None:intergenic | 30.0% |
| !! | GTTTGATAATTGGATTTTCC+GGG | + | chr1_1:66187063-66187082 | None:intergenic | 30.0% |
| AATTATCAAACAGTACAGTG+CGG | - | chr1_1:66187072-66187091 | Msa0037220:CDS | 30.0% | |
| TTAAGCTATTTATCCAAGCA+TGG | + | chr1_1:66187440-66187459 | None:intergenic | 30.0% | |
| !! | GTTGTTTTCGTAAGAATTGT+AGG | - | chr1_1:66187594-66187613 | Msa0037220:intron | 30.0% |
| TATAAGCCCTTATGCTAAAA+GGG | + | chr1_1:66187644-66187663 | None:intergenic | 30.0% | |
| TTATAAGCCCTTATGCTAAA+AGG | + | chr1_1:66187645-66187664 | None:intergenic | 30.0% | |
| ! | ACTGTTTTCGTAACTTATCA+TGG | - | chr1_1:66187719-66187738 | Msa0037220:intron | 30.0% |
| CACTACATTAAGTGCTTATT+TGG | + | chr1_1:66187823-66187842 | None:intergenic | 30.0% | |
| ! | CTGTCATTTAAGAATGTTCA+AGG | - | chr1_1:66187851-66187870 | Msa0037220:intron | 30.0% |
| CATATGAACATAACATTTGG+GGG | + | chr1_1:66187937-66187956 | None:intergenic | 30.0% | |
| TGCATGTGTGAAAATGTAAA+AGG | - | chr1_1:66188028-66188047 | Msa0037220:intron | 30.0% | |
| !! | GTTAAAACTGAAGCATTGTT+TGG | - | chr1_1:66188112-66188131 | Msa0037220:intron | 30.0% |
| ! | TGTTTTCTGACAAATGCAAA+CGG | + | chr1_1:66188322-66188341 | None:intergenic | 30.0% |
| AAAAAGAAACAATACTGACC+CGG | + | chr1_1:66188391-66188410 | None:intergenic | 30.0% | |
| !! | GAATAGTTAGGCTTTTGTTT+TGG | + | chr1_1:66188717-66188736 | None:intergenic | 30.0% |
| TAAATAGTTGACATCCTTGA+GGG | - | chr1_1:66189655-66189674 | Msa0037220:intron | 30.0% | |
| CCAAAGAGGAGAAAAATAAA+AGG | + | chr1_1:66189692-66189711 | None:intergenic | 30.0% | |
| !!! | CCTTTTATTTTTCTCCTCTT+TGG | - | chr1_1:66189689-66189708 | Msa0037220:intron | 30.0% |
| TATGTAGGTATTCATCTAAC+AGG | - | chr1_1:66189804-66189823 | Msa0037220:intron | 30.0% | |
| AAATTGTTCAAATTACAGGG+AGG | - | chr1_1:66189874-66189893 | Msa0037220:intron | 30.0% | |
| TTTGAATGGCATCAAAAAGT+CGG | + | chr1_1:66190056-66190075 | None:intergenic | 30.0% | |
| ! | TTTTCAGTTTTTGTAGCAGT+TGG | - | chr1_1:66190147-66190166 | Msa0037220:CDS | 30.0% |
| CCATTATCATAGACAAACAT+GGG | + | chr1_1:66190267-66190286 | None:intergenic | 30.0% | |
| ACCATTATCATAGACAAACA+TGG | + | chr1_1:66190268-66190287 | None:intergenic | 30.0% | |
| !! | TGTCTATGATAATGGTCATT+CGG | - | chr1_1:66190272-66190291 | Msa0037220:CDS | 30.0% |
| ! | ATTATGGCTTCTTTTATCGT+TGG | + | chr1_1:66190366-66190385 | None:intergenic | 30.0% |
| !!! | CATCACAATGGTTTTTTTGT+TGG | - | chr1_1:66190514-66190533 | Msa0037220:CDS | 30.0% |
| !!! | TTTTTTGTTGGATGTCGTAT+AGG | - | chr1_1:66190526-66190545 | Msa0037220:CDS | 30.0% |
| !! | AATTTACCAAATTTGTTGGG+TGG | - | chr1_1:66190646-66190665 | Msa0037220:CDS | 30.0% |
| GCTTTCCAATTATGAAACAG+TGG | + | chr1_1:66186669-66186688 | None:intergenic | 35.0% | |
| !! | TTGTTGTTCTTTGGAATTGG+AGG | + | chr1_1:66186749-66186768 | None:intergenic | 35.0% |
| ! | ATGAAGAAGAGAAAGAGTGT+GGG | + | chr1_1:66186791-66186810 | None:intergenic | 35.0% |
| ! | ATAATTGGATTTTCCGGGTA+TGG | + | chr1_1:66187058-66187077 | None:intergenic | 35.0% |
| ! | GCACTGTACTGTTTGATAAT+TGG | + | chr1_1:66187073-66187092 | None:intergenic | 35.0% |
| GCACTCATAGTAGCAAAAAA+CGG | + | chr1_1:66187199-66187218 | None:intergenic | 35.0% | |
| !! | TATGAGTGCTGAATTGCAAT+TGG | - | chr1_1:66187210-66187229 | Msa0037220:CDS | 35.0% |
| !! | ATGAGTGCTGAATTGCAATT+GGG | - | chr1_1:66187211-66187230 | Msa0037220:CDS | 35.0% |
| TTGTGAAGAAAACGAAAGCA+TGG | - | chr1_1:66187305-66187324 | Msa0037220:CDS | 35.0% | |
| AAGTTTGCAAATTGCAAGCA+CGG | + | chr1_1:66187385-66187404 | None:intergenic | 35.0% | |
| !!! | TTTGAATTTTTGGCCATGCT+TGG | - | chr1_1:66187424-66187443 | Msa0037220:CDS | 35.0% |
| GACATGTTCAAAAGATTCTC+AGG | + | chr1_1:66187570-66187589 | None:intergenic | 35.0% | |
| TTTCGTAAGAATTGTAGGCT+CGG | - | chr1_1:66187599-66187618 | Msa0037220:intron | 35.0% | |
| ! | CTTATGCCCTTTTAGCATAA+GGG | - | chr1_1:66187635-66187654 | Msa0037220:intron | 35.0% |
| AACTTATCATGGAGAGCTTA+TGG | - | chr1_1:66187730-66187749 | Msa0037220:intron | 35.0% | |
| ACTTATCATGGAGAGCTTAT+GGG | - | chr1_1:66187731-66187750 | Msa0037220:intron | 35.0% | |
| TGTATGCATAGCTGCAATAA+GGG | - | chr1_1:66187891-66187910 | Msa0037220:intron | 35.0% | |
| ! | TGTGTTGATCATGATGATGT+TGG | - | chr1_1:66187983-66188002 | Msa0037220:intron | 35.0% |
| ! | GTGTTGATCATGATGATGTT+GGG | - | chr1_1:66187984-66188003 | Msa0037220:intron | 35.0% |
| !! | AGTTAGTCTTTGGAATTGTC+AGG | - | chr1_1:66188085-66188104 | Msa0037220:intron | 35.0% |
| AAAATCCACAACAAGGAGAA+TGG | + | chr1_1:66188183-66188202 | None:intergenic | 35.0% | |
| !! | ATTCTCCTTGTTGTGGATTT+TGG | - | chr1_1:66188182-66188201 | Msa0037220:intron | 35.0% |
| TTACAGAAACTTGAGTGTGT+TGG | + | chr1_1:66188262-66188281 | None:intergenic | 35.0% | |
| ! | TTTTCTGACAAATGCAAACG+GGG | + | chr1_1:66188320-66188339 | None:intergenic | 35.0% |
| ! | GTTTTCTGACAAATGCAAAC+GGG | + | chr1_1:66188321-66188340 | None:intergenic | 35.0% |
| CACAACCTTCTCTATTTCAA+AGG | - | chr1_1:66188350-66188369 | Msa0037220:intron | 35.0% | |
| !! | GGGTCAGTATTGTTTCTTTT+TGG | - | chr1_1:66188390-66188409 | Msa0037220:intron | 35.0% |
| GAGCATAGTTCCAAAAGAAA+AGG | + | chr1_1:66188430-66188449 | None:intergenic | 35.0% | |
| ! | GTTCTTTTCTTTCTGTGTCA+TGG | - | chr1_1:66188532-66188551 | Msa0037220:intron | 35.0% |
| TTGTCAGAAAATCTCAGTTG+TGG | - | chr1_1:66188596-66188615 | Msa0037220:intron | 35.0% | |
| TGTCAGAAAATCTCAGTTGT+GGG | - | chr1_1:66188597-66188616 | Msa0037220:intron | 35.0% | |
| !! | CTCTTGTTATTGGTTCTCAA+AGG | + | chr1_1:66189050-66189069 | None:intergenic | 35.0% |
| ! | CTTTGAGAACCAATAACAAG+AGG | - | chr1_1:66189048-66189067 | Msa0037220:intron | 35.0% |
| AAAGTAATGGTTCAAAGGCT+AGG | - | chr1_1:66189216-66189235 | Msa0037220:CDS | 35.0% | |
| GTAAATAGTTGACATCCTTG+AGG | - | chr1_1:66189654-66189673 | Msa0037220:intron | 35.0% | |
| GATCTATTGAATAATGAGCC+CGG | - | chr1_1:66189919-66189938 | Msa0037220:intron | 35.0% | |
| AGGTATGCAAAGACTTTGAA+TGG | + | chr1_1:66190070-66190089 | None:intergenic | 35.0% | |
| CCCATGTTTGTCTATGATAA+TGG | - | chr1_1:66190264-66190283 | Msa0037220:CDS | 35.0% | |
| !! | GTCTATGATAATGGTCATTC+GGG | - | chr1_1:66190273-66190292 | Msa0037220:CDS | 35.0% |
| ATGGTGCAGTGAATCATATA+TGG | - | chr1_1:66190319-66190338 | Msa0037220:CDS | 35.0% | |
| ! | CTTTTATCGTTGGCAACTTT+TGG | + | chr1_1:66190356-66190375 | None:intergenic | 35.0% |
| AAGGTATGCAAGGATAGTAA+TGG | + | chr1_1:66190564-66190583 | None:intergenic | 35.0% | |
| ! | TCCTTGCATACCTTTTCTTT+TGG | - | chr1_1:66190570-66190589 | Msa0037220:CDS | 35.0% |
| ! | TCCAAAAGAAAAGGTATGCA+AGG | + | chr1_1:66190574-66190593 | None:intergenic | 35.0% |
| TTCTAGCATCTTTCATGACT+TGG | - | chr1_1:66190600-66190619 | Msa0037220:CDS | 35.0% | |
| AAAACACCACCCAACAAATT+TGG | + | chr1_1:66190655-66190674 | None:intergenic | 35.0% | |
| !!! | TAAGGCTTTTGTTTTGGAGA+TGG | + | chr1_1:66190832-66190851 | None:intergenic | 35.0% |
| !! | GGAGCATTGTTGTTGTTCTT+TGG | + | chr1_1:66186758-66186777 | None:intergenic | 40.0% |
| GATGAAGAAGAGAAAGAGTG+TGG | + | chr1_1:66186792-66186811 | None:intergenic | 40.0% | |
| TACTGAATTTCCACCATACC+CGG | - | chr1_1:66187042-66187061 | Msa0037220:CDS | 40.0% | |
| TGCTGAATTGCAATTGGGTA+TGG | - | chr1_1:66187216-66187235 | Msa0037220:CDS | 40.0% | |
| !! | GAAAGGGGTTTTTAGGAAGA+AGG | - | chr1_1:66187240-66187259 | Msa0037220:CDS | 40.0% |
| !! | GGGTTTTTAGGAAGAAGGTT+GGG | - | chr1_1:66187245-66187264 | Msa0037220:CDS | 40.0% |
| TTGGGAATGAGGATTATCAG+AGG | - | chr1_1:66187263-66187282 | Msa0037220:CDS | 40.0% | |
| !! | GATCATGTGTTTGTTGTCAC+TGG | - | chr1_1:66187346-66187365 | Msa0037220:CDS | 40.0% |
| ! | TAAGAATTGTAGGCTCGGTT+TGG | - | chr1_1:66187604-66187623 | Msa0037220:intron | 40.0% |
| ! | GCTTATGCCCTTTTAGCATA+AGG | - | chr1_1:66187634-66187653 | Msa0037220:intron | 40.0% |
| CTGTATGCATAGCTGCAATA+AGG | - | chr1_1:66187890-66187909 | Msa0037220:intron | 40.0% | |
| ATGATGTTGGGAACAATGAG+AGG | - | chr1_1:66187996-66188015 | Msa0037220:intron | 40.0% | |
| CCAAAGACTAACTCATAAGC+TGG | + | chr1_1:66188078-66188097 | None:intergenic | 40.0% | |
| !! | CCAGCTTATGAGTTAGTCTT+TGG | - | chr1_1:66188075-66188094 | Msa0037220:intron | 40.0% |
| TAACATGCCACATTGCAACT+GGG | + | chr1_1:66188142-66188161 | None:intergenic | 40.0% | |
| TTAACATGCCACATTGCAAC+TGG | + | chr1_1:66188143-66188162 | None:intergenic | 40.0% | |
| TGTTAAAGATGAGATTGCCC+CGG | - | chr1_1:66188157-66188176 | Msa0037220:intron | 40.0% | |
| !! | TCCTTGTTGTGGATTTTGGT+GGG | - | chr1_1:66188186-66188205 | Msa0037220:intron | 40.0% |
| CATTTCAGACGAGGTACAAT+TGG | + | chr1_1:66188237-66188256 | None:intergenic | 40.0% | |
| !! | TGGCTCCTTTGAAATAGAGA+AGG | + | chr1_1:66188358-66188377 | None:intergenic | 40.0% |
| ATTTCAAAGGAGCCAAGCAT+CGG | - | chr1_1:66188363-66188382 | Msa0037220:intron | 40.0% | |
| ! | TCCAAAAGAAAAGGCATGCA+AGG | + | chr1_1:66188421-66188440 | None:intergenic | 40.0% |
| GATCACTTAAAACCATGGAG+TGG | + | chr1_1:66188496-66188515 | None:intergenic | 40.0% | |
| !!! | TTAGGCTTTTGTTTTGGGAG+TGG | + | chr1_1:66188711-66188730 | None:intergenic | 40.0% |
| CCAGCTATGAGTAATATCAC+AGG | + | chr1_1:66188778-66188797 | None:intergenic | 40.0% | |
| CCTGTGATATTACTCATAGC+TGG | - | chr1_1:66188775-66188794 | Msa0037220:intron | 40.0% | |
| ! | TAAGGTCTTATGTATGTGCC+AGG | + | chr1_1:66189084-66189103 | None:intergenic | 40.0% |
| CATCGGAGATGAATTCTGAT+AGG | + | chr1_1:66189157-66189176 | None:intergenic | 40.0% | |
| TAACATAGTGTGACCCAAGT+GGG | + | chr1_1:66189483-66189502 | None:intergenic | 40.0% | |
| AGGCTCATATATGACCAAAG+AGG | + | chr1_1:66189706-66189725 | None:intergenic | 40.0% | |
| GAGCAAAAACAATTCAGCTG+AGG | + | chr1_1:66189726-66189745 | None:intergenic | 40.0% | |
| ! | TAACAGGAGTGTGATTATGC+TGG | - | chr1_1:66189820-66189839 | Msa0037220:intron | 40.0% |
| CCTAGTTAGAGAGAAGTTGT+GGG | - | chr1_1:66189897-66189916 | Msa0037220:intron | 40.0% | |
| TCAAAAAGTCGGCATGAAGT+GGG | + | chr1_1:66190045-66190064 | None:intergenic | 40.0% | |
| ATCAAAAAGTCGGCATGAAG+TGG | + | chr1_1:66190046-66190065 | None:intergenic | 40.0% | |
| ATGTTGTCGCTGACAATAAC+AGG | + | chr1_1:66190090-66190109 | None:intergenic | 40.0% | |
| AACATAGAGCTCCCATTTGA+AGG | - | chr1_1:66190105-66190124 | Msa0037220:CDS | 40.0% | |
| AGTCCACTGTACCTTCAAAT+GGG | + | chr1_1:66190119-66190138 | None:intergenic | 40.0% | |
| TAGTCCACTGTACCTTCAAA+TGG | + | chr1_1:66190120-66190139 | None:intergenic | 40.0% | |
| AGATGATTGACTATCCAGCT+TGG | + | chr1_1:66190186-66190205 | None:intergenic | 40.0% | |
| !! | TATGATAATGGTCATTCGGG+TGG | - | chr1_1:66190276-66190295 | Msa0037220:CDS | 40.0% |
| TCGAGAGAAAAGAAAACCAC+CGG | - | chr1_1:66190386-66190405 | Msa0037220:CDS | 40.0% | |
| TAAGTACATTGACATCGTCG+TGG | + | chr1_1:66190423-66190442 | None:intergenic | 40.0% | |
| GTTCAGAGATTGCATCACAA+TGG | - | chr1_1:66190502-66190521 | Msa0037220:CDS | 40.0% | |
| !!! | GTCTCATGGTACTTTTTCTG+TGG | - | chr1_1:66190676-66190695 | Msa0037220:CDS | 40.0% |
| ! | CAGCTAAGATTAGCTGACAA+TGG | + | chr1_1:66190722-66190741 | None:intergenic | 40.0% |
| ! | AAGAGTGTGGGAATGGAGAA+TGG | + | chr1_1:66186779-66186798 | None:intergenic | 45.0% |
| ! | GAAGAGAAAGAGTGTGGGAA+TGG | + | chr1_1:66186786-66186805 | None:intergenic | 45.0% |
| GAAGAACGTGAGAGAGAGAA+TGG | + | chr1_1:66186822-66186841 | None:intergenic | 45.0% | |
| ! | AAGAGAGAGTGAAGAGTGTG+TGG | + | chr1_1:66186867-66186886 | None:intergenic | 45.0% |
| ! | ATTGGATTTTCCGGGTATGG+TGG | + | chr1_1:66187055-66187074 | None:intergenic | 45.0% |
| AACAGTACAGTGCGGAGTAT+TGG | - | chr1_1:66187080-66187099 | Msa0037220:CDS | 45.0% | |
| !! | AGTGCGGAGTATTGGATCAT+GGG | - | chr1_1:66187088-66187107 | Msa0037220:CDS | 45.0% |
| GTACTGGGTCGTTTGCAAAA+CGG | - | chr1_1:66187137-66187156 | Msa0037220:CDS | 45.0% | |
| TACTGGGTCGTTTGCAAAAC+GGG | - | chr1_1:66187138-66187157 | Msa0037220:CDS | 45.0% | |
| TTGCAATTGGGTATGGCGAA+AGG | - | chr1_1:66187223-66187242 | Msa0037220:CDS | 45.0% | |
| TGCAATTGGGTATGGCGAAA+GGG | - | chr1_1:66187224-66187243 | Msa0037220:CDS | 45.0% | |
| ! | GTATGGCGAAAGGGGTTTTT+AGG | - | chr1_1:66187233-66187252 | Msa0037220:CDS | 45.0% |
| !! | GGGGTTTTTAGGAAGAAGGT+TGG | - | chr1_1:66187244-66187263 | Msa0037220:CDS | 45.0% |
| TAGGAAGAAGGTTGGGAATG+AGG | - | chr1_1:66187252-66187271 | Msa0037220:CDS | 45.0% | |
| ATGAGGATTATCAGAGGCAG+AGG | - | chr1_1:66187269-66187288 | Msa0037220:CDS | 45.0% | |
| TGAGGATTATCAGAGGCAGA+GGG | - | chr1_1:66187270-66187289 | Msa0037220:CDS | 45.0% | |
| ! | ACGAAAGCATGGAATCGTTC+TGG | - | chr1_1:66187316-66187335 | Msa0037220:CDS | 45.0% |
| AAAGCATGGAATCGTTCTGG+TGG | - | chr1_1:66187319-66187338 | Msa0037220:CDS | 45.0% | |
| AAGCATGGAATCGTTCTGGT+GGG | - | chr1_1:66187320-66187339 | Msa0037220:CDS | 45.0% | |
| !! | CTCCTTGTTGTGGATTTTGG+TGG | - | chr1_1:66188185-66188204 | Msa0037220:intron | 45.0% |
| ACCCACCAAAATCCACAACA+AGG | + | chr1_1:66188190-66188209 | None:intergenic | 45.0% | |
| !! | TTGTTGTGGATTTTGGTGGG+TGG | - | chr1_1:66188189-66188208 | Msa0037220:intron | 45.0% |
| GTGTTGGATCATTTCAGACG+AGG | + | chr1_1:66188246-66188265 | None:intergenic | 45.0% | |
| ! | GCCTTGCATGCCTTTTCTTT+TGG | - | chr1_1:66188417-66188436 | Msa0037220:intron | 45.0% |
| TGGACTCTTTATCCACTCCA+TGG | - | chr1_1:66188481-66188500 | Msa0037220:intron | 45.0% | |
| CATGGCACTTGTTCTTTGTG+TGG | - | chr1_1:66188550-66188569 | Msa0037220:intron | 45.0% | |
| TCAATCACTCTTATGCCCGT+TGG | - | chr1_1:66188735-66188754 | Msa0037220:intron | 45.0% | |
| ACTTCCTGGGGTGTATGAAA+TGG | + | chr1_1:66188911-66188930 | None:intergenic | 45.0% | |
| ! | AGCGTTGAGCCTCTTGTTAT+TGG | + | chr1_1:66189060-66189079 | None:intergenic | 45.0% |
| GTCTGTTAGCTGCAATATGC+TGG | + | chr1_1:66189419-66189438 | None:intergenic | 45.0% | |
| ! | GTAGCCACGTTCCATCATTT+TGG | - | chr1_1:66189453-66189472 | Msa0037220:intron | 45.0% |
| ! | AGCACCAAAATGATGGAACG+TGG | + | chr1_1:66189460-66189479 | None:intergenic | 45.0% |
| !! | AAGTGGGAGCACCAAAATGA+TGG | + | chr1_1:66189467-66189486 | None:intergenic | 45.0% |
| !!! | ATCATTTTGGTGCTCCCACT+TGG | - | chr1_1:66189466-66189485 | Msa0037220:intron | 45.0% |
| !!! | TCATTTTGGTGCTCCCACTT+GGG | - | chr1_1:66189467-66189486 | Msa0037220:intron | 45.0% |
| CTAACATAGTGTGACCCAAG+TGG | + | chr1_1:66189484-66189503 | None:intergenic | 45.0% | |
| GCCTAGTTAGAGAGAAGTTG+TGG | - | chr1_1:66189896-66189915 | Msa0037220:intron | 45.0% | |
| CCCACAACTTCTCTCTAACT+AGG | + | chr1_1:66189900-66189919 | None:intergenic | 45.0% | |
| TAATGAGCCCGGTGTAATCA+TGG | - | chr1_1:66189930-66189949 | Msa0037220:intron | 45.0% | |
| GGCGAGAGCAATCAATACAA+GGG | - | chr1_1:66189977-66189996 | Msa0037220:intron | 45.0% | |
| GTGATGCACTTAAACCAAGC+TGG | - | chr1_1:66190169-66190188 | Msa0037220:CDS | 45.0% | |
| AATGGTCATTCGGGTGGTAT+TGG | - | chr1_1:66190282-66190301 | Msa0037220:CDS | 45.0% | |
| TGATTCACTGCACCATCCAT+AGG | + | chr1_1:66190315-66190334 | None:intergenic | 45.0% | |
| CGAGAGAAAAGAAAACCACC+GGG | - | chr1_1:66190387-66190406 | Msa0037220:CDS | 45.0% | |
| !! | TGGGTGGTGTTTTTGTCTCA+TGG | - | chr1_1:66190662-66190681 | Msa0037220:CDS | 45.0% |
| !!! | ATTTTATAATTAAACATTAT+AGG | + | chr1_1:66189771-66189790 | None:intergenic | 5.0% |
| ! | AGAGAGTGAAGAGTGTGTGG+TGG | + | chr1_1:66186864-66186883 | None:intergenic | 50.0% |
| TCTCTTCAACCAACCACCTC+CGG | - | chr1_1:66186881-66186900 | Msa0037220:three_prime_UTR | 50.0% | |
| TTCACCTCCGATTCCCGAAT+CGG | - | chr1_1:66186971-66186990 | Msa0037220:three_prime_UTR | 50.0% | |
| !! | CAGTGCGGAGTATTGGATCA+TGG | - | chr1_1:66187087-66187106 | Msa0037220:CDS | 50.0% |
| !! | GTGCGGAGTATTGGATCATG+GGG | - | chr1_1:66187089-66187108 | Msa0037220:CDS | 50.0% |
| !! | TGCGGAGTATTGGATCATGG+GGG | - | chr1_1:66187090-66187109 | Msa0037220:CDS | 50.0% |
| ACACCGACGAAATTGCGTAC+TGG | - | chr1_1:66187121-66187140 | Msa0037220:CDS | 50.0% | |
| CACCGACGAAATTGCGTACT+GGG | - | chr1_1:66187122-66187141 | Msa0037220:CDS | 50.0% | |
| GACCCAGTACGCAATTTCGT+CGG | + | chr1_1:66187127-66187146 | None:intergenic | 50.0% | |
| GCAATTGGGTATGGCGAAAG+GGG | - | chr1_1:66187225-66187244 | Msa0037220:CDS | 50.0% | |
| TCCACAACAAGGAGAATGGC+CGG | + | chr1_1:66188179-66188198 | None:intergenic | 50.0% | |
| CGGGGTAGAAGATGTGTGTA+CGG | + | chr1_1:66188302-66188321 | None:intergenic | 50.0% | |
| !! | TTTTGGGAGTGGCGACAGTA+GGG | + | chr1_1:66188700-66188719 | None:intergenic | 50.0% |
| ! | CATGCCATTTCATACACCCC+AGG | - | chr1_1:66188904-66188923 | Msa0037220:intron | 50.0% |
| ! | CAAGTTGAGAGTTGTGCCAC+GGG | + | chr1_1:66189385-66189404 | None:intergenic | 50.0% |
| ! | CCAAGTTGAGAGTTGTGCCA+CGG | + | chr1_1:66189386-66189405 | None:intergenic | 50.0% |
| GCACAACTCTCAACTTGGAG+CGG | - | chr1_1:66189388-66189407 | Msa0037220:intron | 50.0% | |
| CACAACTCTCAACTTGGAGC+GGG | - | chr1_1:66189389-66189408 | Msa0037220:intron | 50.0% | |
| ! | GAACGTGGCTACAGCTTGTT+TGG | + | chr1_1:66189445-66189464 | None:intergenic | 50.0% |
| AGGCAGAGAATTCACCCTCA+AGG | + | chr1_1:66189672-66189691 | None:intergenic | 50.0% | |
| CCTTCCTCCATGATTACACC+GGG | + | chr1_1:66189940-66189959 | None:intergenic | 50.0% | |
| GCCTTCCTCCATGATTACAC+CGG | + | chr1_1:66189941-66189960 | None:intergenic | 50.0% | |
| AAGGCTTCCCTAATGCGACT+GGG | - | chr1_1:66189956-66189975 | Msa0037220:intron | 50.0% | |
| GGGCGAGAGCAATCAATACA+AGG | - | chr1_1:66189976-66189995 | Msa0037220:intron | 50.0% | |
| ! | ATCCGAGTTTTGCCTGCATC+CGG | - | chr1_1:66190008-66190027 | Msa0037220:intron | 50.0% |
| ! | GCTCCCATTTGAAGGTACAG+TGG | - | chr1_1:66190113-66190132 | Msa0037220:CDS | 50.0% |
| AGACACGTTCCGCCAAAACA+TGG | - | chr1_1:66190230-66190249 | Msa0037220:CDS | 50.0% | |
| !! | TGGTATTGGCCCTGTACCTA+TGG | - | chr1_1:66190296-66190315 | Msa0037220:CDS | 50.0% |
| ATTGGCCCTGTACCTATGGA+TGG | - | chr1_1:66190300-66190319 | Msa0037220:CDS | 50.0% | |
| CTGCACCATCCATAGGTACA+GGG | + | chr1_1:66190308-66190327 | None:intergenic | 50.0% | |
| ACTGCACCATCCATAGGTAC+AGG | + | chr1_1:66190309-66190328 | None:intergenic | 50.0% | |
| AAGAAAACCACCGGGTGTGT+TGG | - | chr1_1:66190395-66190414 | Msa0037220:CDS | 50.0% | |
| !! | AGAGTGTGTGGTGGTGGTGT+AGG | + | chr1_1:66186855-66186874 | None:intergenic | 55.0% |
| ! | GAGTGAAGAGTGTGTGGTGG+TGG | + | chr1_1:66186861-66186880 | None:intergenic | 55.0% |
| AGGGCGTAGTTGAGGGATCT+GGG | + | chr1_1:66186932-66186951 | None:intergenic | 55.0% | |
| ! | GTTGAGGAGGGCGTAGTTGA+GGG | + | chr1_1:66186939-66186958 | None:intergenic | 55.0% |
| TGAAGGACCAGTAGCGGTTG+AGG | + | chr1_1:66186955-66186974 | None:intergenic | 55.0% | |
| GATTCGGGAATCGGAGGTGA+AGG | + | chr1_1:66186972-66186991 | None:intergenic | 55.0% | |
| GGATTATCAGAGGCAGAGGG+AGG | - | chr1_1:66187273-66187292 | Msa0037220:CDS | 55.0% | |
| TGGCAGACCCAGTTGCAATG+TGG | - | chr1_1:66188132-66188151 | Msa0037220:intron | 55.0% | |
| CACAACAAGGAGAATGGCCG+GGG | + | chr1_1:66188177-66188196 | None:intergenic | 55.0% | |
| CCACAACAAGGAGAATGGCC+GGG | + | chr1_1:66188178-66188197 | None:intergenic | 55.0% | |
| TTTGGGAGTGGCGACAGTAG+GGG | + | chr1_1:66188699-66188718 | None:intergenic | 55.0% | |
| !!! | GTTTTGGGAGTGGCGACAGT+AGG | + | chr1_1:66188701-66188720 | None:intergenic | 55.0% |
| ACAAGAGGCTCAACGCTTCC+TGG | - | chr1_1:66189063-66189082 | Msa0037220:intron | 55.0% | |
| GGTTCAAAGGCTAGGCTCAC+CGG | - | chr1_1:66189224-66189243 | Msa0037220:CDS | 55.0% | |
| GTTCAAAGGCTAGGCTCACC+GGG | - | chr1_1:66189225-66189244 | Msa0037220:CDS | 55.0% | |
| CACTTCCAGTCCACTAAGCC+CGG | + | chr1_1:66189246-66189265 | None:intergenic | 55.0% | |
| CCTGTAGTCCCTCCACTGTT+GGG | - | chr1_1:66189272-66189291 | Msa0037220:CDS | 55.0% | |
| ! | ATACCTCTGGCTCCCAACAG+TGG | + | chr1_1:66189287-66189306 | None:intergenic | 55.0% |
| CACAGAGCAGCGAATACCTC+TGG | + | chr1_1:66189300-66189319 | None:intergenic | 55.0% | |
| ACGCAGTTCCCTCTCGTCTA+GGG | - | chr1_1:66189331-66189350 | Msa0037220:intron | 55.0% | |
| CTCTTGGTCCCTAGACGAGA+GGG | + | chr1_1:66189342-66189361 | None:intergenic | 55.0% | |
| TCTCTTGGTCCCTAGACGAG+AGG | + | chr1_1:66189343-66189362 | None:intergenic | 55.0% | |
| GGGCGAAGGTCTATGTCTCT+TGG | + | chr1_1:66189358-66189377 | None:intergenic | 55.0% | |
| AGAGTTGTGCCACGGGACAT+GGG | + | chr1_1:66189378-66189397 | None:intergenic | 55.0% | |
| CCGTGGCACAACTCTCAACT+TGG | - | chr1_1:66189383-66189402 | Msa0037220:intron | 55.0% | |
| ! | GTGGCTACAGCTTGTTTGGC+TGG | + | chr1_1:66189441-66189460 | None:intergenic | 55.0% |
| TGAGCCCGGTGTAATCATGG+AGG | - | chr1_1:66189933-66189952 | Msa0037220:intron | 55.0% | |
| CCCGGTGTAATCATGGAGGA+AGG | - | chr1_1:66189937-66189956 | Msa0037220:intron | 55.0% | |
| GAAGGCTTCCCTAATGCGAC+TGG | - | chr1_1:66189955-66189974 | Msa0037220:intron | 55.0% | |
| AGCCGGATGCAGGCAAAACT+CGG | + | chr1_1:66190013-66190032 | None:intergenic | 55.0% | |
| ! | AGTTTTGCCTGCATCCGGCT+GGG | - | chr1_1:66190013-66190032 | Msa0037220:intron | 55.0% |
| !! | GCACTCGAGCCATGTTTTGG+CGG | + | chr1_1:66190242-66190261 | None:intergenic | 55.0% |
| ! | GCTGCACTCGAGCCATGTTT+TGG | + | chr1_1:66190245-66190264 | None:intergenic | 55.0% |
| !! | GTGTGTGGTGGTGGTGTAGG+AGG | + | chr1_1:66186852-66186871 | None:intergenic | 60.0% |
| ACGTTGATGCCGGAGGTGGT+TGG | + | chr1_1:66186893-66186912 | None:intergenic | 60.0% | |
| GTAGACGTTGATGCCGGAGG+TGG | + | chr1_1:66186897-66186916 | None:intergenic | 60.0% | |
| GACGTAGACGTTGATGCCGG+AGG | + | chr1_1:66186900-66186919 | None:intergenic | 60.0% | |
| GGCGACGTAGACGTTGATGC+CGG | + | chr1_1:66186903-66186922 | None:intergenic | 60.0% | |
| GTTGAGGGATCTGGGGAGGT+CGG | + | chr1_1:66186924-66186943 | None:intergenic | 60.0% | |
| CGTAGTTGAGGGATCTGGGG+AGG | + | chr1_1:66186928-66186947 | None:intergenic | 60.0% | |
| GGGCGTAGTTGAGGGATCTG+GGG | + | chr1_1:66186931-66186950 | None:intergenic | 60.0% | |
| ! | GAGGGCGTAGTTGAGGGATC+TGG | + | chr1_1:66186933-66186952 | None:intergenic | 60.0% |
| ! | GGTTGAGGAGGGCGTAGTTG+AGG | + | chr1_1:66186940-66186959 | None:intergenic | 60.0% |
| GGACCAGTAGCGGTTGAGGA+GGG | + | chr1_1:66186951-66186970 | None:intergenic | 60.0% | |
| AGGACCAGTAGCGGTTGAGG+AGG | + | chr1_1:66186952-66186971 | None:intergenic | 60.0% | |
| CGGAGGTGAAGGACCAGTAG+CGG | + | chr1_1:66186961-66186980 | None:intergenic | 60.0% | |
| !! | GTCGCTGCCGATTCGGGAAT+CGG | + | chr1_1:66186981-66187000 | None:intergenic | 60.0% |
| !! | ATCGACGTCGCTGCCGATTC+GGG | + | chr1_1:66186987-66187006 | None:intergenic | 60.0% |
| ! | GATCGACGTCGCTGCCGATT+CGG | + | chr1_1:66186988-66187007 | None:intergenic | 60.0% |
| CCCGGCCATTCTCCTTGTTG+TGG | - | chr1_1:66188175-66188194 | Msa0037220:intron | 60.0% | |
| !! | AAGGAGCCAAGCATCGGCAC+CGG | - | chr1_1:66188369-66188388 | Msa0037220:intron | 60.0% |
| GCCTGTAGTCCCTCCACTGT+TGG | - | chr1_1:66189271-66189290 | Msa0037220:CDS | 60.0% | |
| CCCAACAGTGGAGGGACTAC+AGG | + | chr1_1:66189275-66189294 | None:intergenic | 60.0% | |
| ! | CTCTGGCTCCCAACAGTGGA+GGG | + | chr1_1:66189283-66189302 | None:intergenic | 60.0% |
| AGACGAGAGGGAACTGCGTG+AGG | + | chr1_1:66189330-66189349 | None:intergenic | 60.0% | |
| CACGCAGTTCCCTCTCGTCT+AGG | - | chr1_1:66189330-66189349 | Msa0037220:intron | 60.0% | |
| GAGAGTTGTGCCACGGGACA+TGG | + | chr1_1:66189379-66189398 | None:intergenic | 60.0% | |
| ACTCTCAACTTGGAGCGGGC+AGG | - | chr1_1:66189393-66189412 | Msa0037220:intron | 60.0% | |
| GCTCTCGCCCAGTCGCATTA+GGG | + | chr1_1:66189966-66189985 | None:intergenic | 60.0% | |
| TGCTCTCGCCCAGTCGCATT+AGG | + | chr1_1:66189967-66189986 | None:intergenic | 60.0% | |
| ! | GAGTTTTGCCTGCATCCGGC+TGG | - | chr1_1:66190012-66190031 | Msa0037220:intron | 60.0% |
| ! | GTTTTGCCTGCATCCGGCTG+GGG | - | chr1_1:66190014-66190033 | Msa0037220:intron | 60.0% |
| CGTCGTGGAACCAACACACC+CGG | + | chr1_1:66190408-66190427 | None:intergenic | 60.0% | |
| ACGCCCTCCTCAACCGCTAC+TGG | - | chr1_1:66186945-66186964 | Msa0037220:three_prime_UTR | 65.0% | |
| !! | GCTGCCGATTCGGGAATCGG+AGG | + | chr1_1:66186978-66186997 | None:intergenic | 65.0% |
| !! | AGGAGCCAAGCATCGGCACC+GGG | - | chr1_1:66188370-66188389 | Msa0037220:intron | 65.0% |
| !! | ACTGACCCGGTGCCGATGCT+TGG | + | chr1_1:66188378-66188397 | None:intergenic | 65.0% |
| GCTAGGCTCACCGGGCTTAG+TGG | - | chr1_1:66189233-66189252 | Msa0037220:CDS | 65.0% | |
| ! | GCTCACCGGGCTTAGTGGAC+TGG | - | chr1_1:66189238-66189257 | Msa0037220:CDS | 65.0% |
| ! | CCTCTGGCTCCCAACAGTGG+AGG | + | chr1_1:66189284-66189303 | None:intergenic | 65.0% |
| CCTCCACTGTTGGGAGCCAG+AGG | - | chr1_1:66189281-66189300 | Msa0037220:CDS | 65.0% | |
| GAGAGGGAACTGCGTGAGGC+TGG | + | chr1_1:66189326-66189345 | None:intergenic | 65.0% | |
| AGACCTTCGCCCATGTCCCG+TGG | - | chr1_1:66189366-66189385 | Msa0037220:intron | 65.0% | |
| GAAGTGGGTGTGTCCCCAGC+CGG | + | chr1_1:66190030-66190049 | None:intergenic | 65.0% | |
| CGTGGAACCAACACACCCGG+TGG | + | chr1_1:66190405-66190424 | None:intergenic | 65.0% | |
| GTGCCACGGGACATGGGCGA+AGG | + | chr1_1:66189372-66189391 | None:intergenic | 70.0% | |
| GTGTGTCCCCAGCCGGATGC+AGG | + | chr1_1:66190023-66190042 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 66186599 | 66190867 | 66186599 | ID=Msa0037220;Name=Msa0037220 |
| chr1_1 | mRNA | 66186599 | 66190867 | 66186599 | ID=Msa0037220-mRNA-1;Parent=Msa0037220;Name=Msa0037220-mRNA-1;_AED=0.19;_eAED=0.19;_QI=144|1|1|1|1|1|3|424|476 |
| chr1_1 | exon | 66186599 | 66187574 | 66186599 | ID=Msa0037220-mRNA-1:exon:21396;Parent=Msa0037220-mRNA-1 |
| chr1_1 | exon | 66189075 | 66189328 | 66189075 | ID=Msa0037220-mRNA-1:exon:21395;Parent=Msa0037220-mRNA-1 |
| chr1_1 | exon | 66190099 | 66190867 | 66190099 | ID=Msa0037220-mRNA-1:exon:21394;Parent=Msa0037220-mRNA-1 |
| chr1_1 | five_prime_UTR | 66190724 | 66190867 | 66190724 | ID=Msa0037220-mRNA-1:five_prime_utr;Parent=Msa0037220-mRNA-1 |
| chr1_1 | CDS | 66190099 | 66190723 | 66190099 | ID=Msa0037220-mRNA-1:cds;Parent=Msa0037220-mRNA-1 |
| chr1_1 | CDS | 66189075 | 66189328 | 66189075 | ID=Msa0037220-mRNA-1:cds;Parent=Msa0037220-mRNA-1 |
| chr1_1 | CDS | 66187023 | 66187574 | 66187023 | ID=Msa0037220-mRNA-1:cds;Parent=Msa0037220-mRNA-1 |
| chr1_1 | three_prime_UTR | 66186599 | 66187022 | 66186599 | ID=Msa0037220-mRNA-1:three_prime_utr;Parent=Msa0037220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
