AlfalfaGEDB | Msa0084680

M. sativa cultivar zhongmu-4 / Msa0084680

KEGG: -
GO: GO:0000154 GO:0000455 GO:0000470 GO:0000488 GO:0000489 GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009501 GO:0009507 GO:0009536 GO:0009657 GO:0009982 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016853 GO:0016866 GO:0019538 GO:0022613 GO:0030490 GO:0031118 GO:0032544 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00849.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0084680	XP_013469447.1	84.804	408	10	2	1	356	1	408	0.0	684

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0084680	sp\|Q8L960\|SVR1_ARATH	52.393	397	126	7	14	350	16	409	4.10e-121	358

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0084680	I3SRW6	84.804	408	10	2	1	356	1	408	0.0	684

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0084680	0.881072	3.250987e-70	-8.615850e-47
Msa0001460	Msa0084680	0.873162	1.820976e-67	-8.615850e-47
Msa0001950	Msa0084680	0.883233	5.336380e-71	-8.615850e-47
Msa0003060	Msa0084680	0.835995	1.212311e-56	-8.615850e-47
Msa0003470	Msa0084680	0.905354	4.690738e-80	-8.615850e-47
Msa0004350	Msa0084680	0.844421	7.642265e-59	-8.615850e-47
Msa0004610	Msa0084680	0.820615	6.246148e-53	-8.615850e-47
Msa0005160	Msa0084680	0.803466	3.439095e-49	-8.615850e-47
Msa0006700	Msa0084680	0.851072	1.125631e-60	-8.615850e-47
Msa0006820	Msa0084680	0.808109	3.640140e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0084680	MtrunA17_Chr1g0199231	84.804	408	10	2	1	356	1	408	0.0	684

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0084680	AT2G39140.1	52.393	397	126	7	14	350	16	409	4.17e-122	358
Msa0084680	AT2G39140.2	52.243	379	118	7	14	332	16	391	2.31e-114	338
Msa0084680	AT3G43340.1	72.603	73	20	0	260	332	2	74	1.30e-32	117

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Find 115 sgRNAs with CRISPR-Local

Find 445 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTACCCAAGGTCTGG+TGG	0.562045	1_2:-64217561	None:intergenic
AAAGCTAATTCTTAATTTGT+TGG	0.315258	1_2:+64217794	Msa0084680:exon
AAAGGAAACCAAGATTCGTG+CGG	0.715044	1_2:+64211397	Msa0084680:CDS
AAATTAAACTAGATAGGAAG+CGG	0.579236	1_2:+64218047	Msa0084680:three_prime_UTR
AACCTTACTGAGACGAGTAC+CGG	0.477937	1_2:-64211486	None:intergenic
AACTGGGAGGAGGCTCTGAT+AGG	0.498976	1_2:-64211292	None:intergenic
AAGATCTCGACTTCGTATTG+TGG	0.600050	1_2:+64215990	Msa0084680:CDS
AAGGATAATATCTATGTCAA+TGG	0.465940	1_2:+64214889	Msa0084680:intron
AAGGCAAGATAAACTTTGTG+AGG	0.621759	1_2:-64214934	None:intergenic
AAGTGAAGCGAGGGAGAGTG+CGG	0.574272	1_2:-64211112	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGTAAGTTTGGTTGATT+TGG	-	chr1_2:64211087-64211106	None:intergenic	30.0%
AGAGAAAGAGATGTTGAATT+TGG	-	chr1_2:64211150-64211169	None:intergenic	30.0%
ACTCGTTGTAGTTACTAAAA+TGG	+	chr1_2:64211808-64211827	Msa0084680:intron	30.0%
CTCGTTGTAGTTACTAAAAT+GGG	+	chr1_2:64211809-64211828	Msa0084680:intron	30.0%
AATAAAGAAAGGTGAGAAAG+TGG	+	chr1_2:64212299-64212318	Msa0084680:intron	30.0%
ATAAAGAAAGGTGAGAAAGT+GGG	+	chr1_2:64212300-64212319	Msa0084680:intron	30.0%
AAGTAAAATTGGTAGAGACT+TGG	+	chr1_2:64212464-64212483	Msa0084680:intron	30.0%
GACTGTGAATAATGATGTAA+TGG	-	chr1_2:64212795-64212814	None:intergenic	30.0%
TTTATCCATTGTTGAGCTTT+AGG	+	chr1_2:64213187-64213206	Msa0084680:intron	30.0%
TGACTTTCTCAACAATTTGA+AGG	+	chr1_2:64213382-64213401	Msa0084680:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	64211035	64218251	64211035	ID=Msa0084680;Name=Msa0084680
chr1_2	mRNA	64211035	64218251	64211035	ID=Msa0084680-mRNA-1;Parent=Msa0084680;Name=Msa0084680-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0\|0.77\|0.7\|1\|0.77\|0.7\|10\|443\|356
chr1_2	exon	64211035	64211239	64211035	ID=Msa0084680-mRNA-1:exon:21649;Parent=Msa0084680-mRNA-1
chr1_2	exon	64211276	64211505	64211276	ID=Msa0084680-mRNA-1:exon:21650;Parent=Msa0084680-mRNA-1
chr1_2	exon	64214892	64214971	64214892	ID=Msa0084680-mRNA-1:exon:21651;Parent=Msa0084680-mRNA-1
chr1_2	exon	64215068	64215140	64215068	ID=Msa0084680-mRNA-1:exon:21652;Parent=Msa0084680-mRNA-1
chr1_2	exon	64215323	64215416	64215323	ID=Msa0084680-mRNA-1:exon:21653;Parent=Msa0084680-mRNA-1
chr1_2	exon	64215527	64215575	64215527	ID=Msa0084680-mRNA-1:exon:21654;Parent=Msa0084680-mRNA-1
chr1_2	exon	64215861	64216011	64215861	ID=Msa0084680-mRNA-1:exon:21655;Parent=Msa0084680-mRNA-1
chr1_2	exon	64216717	64216773	64216717	ID=Msa0084680-mRNA-1:exon:21656;Parent=Msa0084680-mRNA-1
chr1_2	exon	64217519	64217574	64217519	ID=Msa0084680-mRNA-1:exon:21657;Parent=Msa0084680-mRNA-1
chr1_2	exon	64217733	64218251	64217733	ID=Msa0084680-mRNA-1:exon:21658;Parent=Msa0084680-mRNA-1
chr1_2	CDS	64211035	64211239	64211035	ID=Msa0084680-mRNA-1:cds;Parent=Msa0084680-mRNA-1
chr1_2	CDS	64211276	64211505	64211276	ID=Msa0084680-mRNA-1:cds;Parent=Msa0084680-mRNA-1
chr1_2	CDS	64214892	64214971	64214892	ID=Msa0084680-mRNA-1:cds;Parent=Msa0084680-mRNA-1
chr1_2	CDS	64215068	64215140	64215068	ID=Msa0084680-mRNA-1:cds;Parent=Msa0084680-mRNA-1
chr1_2	CDS	64215323	64215416	64215323	ID=Msa0084680-mRNA-1:cds;Parent=Msa0084680-mRNA-1
chr1_2	CDS	64215527	64215575	64215527	ID=Msa0084680-mRNA-1:cds;Parent=Msa0084680-mRNA-1
chr1_2	CDS	64215861	64216011	64215861	ID=Msa0084680-mRNA-1:cds;Parent=Msa0084680-mRNA-1
chr1_2	CDS	64216717	64216773	64216717	ID=Msa0084680-mRNA-1:cds;Parent=Msa0084680-mRNA-1
chr1_2	CDS	64217519	64217574	64217519	ID=Msa0084680-mRNA-1:cds;Parent=Msa0084680-mRNA-1
chr1_2	CDS	64217733	64217808	64217733	ID=Msa0084680-mRNA-1:cds;Parent=Msa0084680-mRNA-1
chr1_2	three_prime_UTR	64217809	64218251	64217809	ID=Msa0084680-mRNA-1:three_prime_utr;Parent=Msa0084680-mRNA-1

Gene Sequence

>Msa0084680

ATGGGTTCAGCGGCAACAATGGCAATGACAGCACTCTATTTCACCACCACCAAATCAACCAAACTTACTTCTACCTTCCGCACTCTCCCTCGCTTCACTTGTTCCTCCTCCTCCAAATTCAACATCTCTTTCTCTCCCTCTAACCCCAAACCCAAGCCCGCTCCTCAGCCCAAAACCCATACCCCCGACAACGACGATGACGAAGATGGCAACTTCAAGCTCCTATCAGAGCCTCCTCCCAGTTTTCTCAAAGAAATGGCTAATGCTCAAACCGGTACCAAAAAATCAGAGAAGGACCAAATTACCAAAAACAAGAAAAAGAGTGAAAAGGAAACCAAGATTCGTGCGGTGACAGCGCCGCCGCAGTATTCTAAAGCGGCTAGGAGATTCTATAATGAAAATATTAAGGAGGACTCCGGTACTCGTCTCAGTAAGGATAATATCTATGTCAATGGAAGCCGCCTTCCTAAGAGGCAGCCTCACAAAGTTTATCTTGCCTTGAACAAACCAAAAGGGTACATATGCTCATCTGGGGAAAAGGAGTCTAAATCTGTTATAAGTCTATTTGATGATTTTTTGAGCAGTTGGGATAAAAAGCATCCAGGAGTACCCCCACCAAGACTATTTACTGTAGGGCGCCTTGATGTTGCAACTACTGGGTTACTTATTGTGACTAATGATGGAGATTTTGCTCAAAAACTTTCACATCCGTCATCTAATTTTTCAAAAGAATACATTGCAACAGTTAATGGTCTAGTTCATAAGAGGCACTTAACAGCCATAAGTGAGGGAACAACAATTGAGGGTGTCCACTGTGTACCTGATAGTGTGGAGTTACTTCCACGTATGCCGGATACACAAAGATCTCGACTTCGTATTGTGGTTCATGATGGAAGGAAGCATGAAGTTCGTGAACTTGTTAAAAGTGCTGGACTTGAGATTCATTCATTAAAGCGAGTTCGCATCGGTGGTTTTAGACTTCCACCAGACCTTGGGCTAGGGAAGTACATTGAGCTAAATCCGACAAATCTAAAAGCATTGGGAGGAAGAGTTAACAAAGCTAATTCTTAA

Protein sequence

>Msa0084680

MGSAATMAMTALYFTTTKSTKLTSTFRTLPRFTCSSSSKFNISFSPSNPKPKPAPQPKTHTPDNDDDEDGNFKLLSEPPPSFLKEMANAQTGTKKSEKDQITKNKKKSEKETKIRAVTAPPQYSKAARRFYNENIKEDSGTRLSKDNIYVNGSRLPKRQPHKVYLALNKPKGYICSSGEKESKSVISLFDDFLSSWDKKHPGVPPPRLFTVGRLDVATTGLLIVTNDGDFAQKLSHPSSNFSKEYIATVNGLVHKRHLTAISEGTTIEGVHCVPDSVELLPRMPDTQRSRLRIVVHDGRKHEVRELVKSAGLEIHSLKRVRIGGFRLPPDLGLGKYIELNPTNLKALGGRVNKANS*