Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0189890 | XP_003593237.1 | 95.495 | 333 | 4 | 1 | 1 | 322 | 209 | 541 | 0.0 | 646 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0189890 | sp|P47924|RIBA1_ARATH | 82.803 | 314 | 43 | 1 | 1 | 303 | 216 | 529 | 0.0 | 551 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0189890 | G7IPL5 | 95.495 | 333 | 4 | 1 | 1 | 322 | 209 | 541 | 0.0 | 646 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0189890 | Msa0246140 | 0.807841 | 4.151542e-50 | -8.615850e-47 |
Msa0189890 | Msa0315120 | 0.838477 | 2.809902e-57 | -8.615850e-47 |
Msa0189890 | Msa0826360 | 0.803637 | 3.170092e-49 | -8.615850e-47 |
Msa0189890 | Msa0826380 | 0.817457 | 3.264512e-52 | -8.615850e-47 |
Msa0189890 | Msa0826450 | 0.800372 | 1.486253e-48 | -8.615850e-47 |
Msa0189890 | Msa0865830 | 0.813723 | 2.215903e-51 | -8.615850e-47 |
Msa0189890 | Msa0881510 | 0.908216 | 2.178721e-81 | -8.615850e-47 |
Msa0189890 | Msa0982110 | 0.853302 | 2.613803e-61 | -8.615850e-47 |
Msa0189890 | Msa1183750 | 0.800511 | 1.392790e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0189890 | MtrunA17_Chr2g0279401 | 95.495 | 333 | 4 | 1 | 1 | 322 | 209 | 541 | 0.0 | 646 |
Msa0189890 | MtrunA17_Chr4g0050151 | 81.381 | 333 | 50 | 2 | 1 | 321 | 202 | 534 | 0.0 | 565 |
Msa0189890 | MtrunA17_Chr2g0327771 | 68.571 | 315 | 87 | 2 | 1 | 303 | 193 | 507 | 5.73e-156 | 446 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0189890 | AT5G64300.1 | 82.803 | 314 | 43 | 1 | 1 | 303 | 216 | 529 | 0.0 | 551 |
Msa0189890 | AT5G59750.1 | 68.454 | 317 | 88 | 2 | 1 | 305 | 189 | 505 | 6.24e-158 | 451 |
Msa0189890 | AT5G59750.2 | 68.454 | 317 | 88 | 2 | 1 | 305 | 223 | 539 | 1.05e-157 | 452 |
Msa0189890 | AT2G22450.1 | 68.551 | 283 | 82 | 3 | 1 | 278 | 194 | 474 | 8.68e-140 | 404 |
Msa0189890 | AT5G59750.3 | 72.727 | 242 | 65 | 1 | 1 | 241 | 189 | 430 | 2.69e-126 | 369 |
Find 102 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCTATGGTTTGACTGTTTC+TGG | 0.114584 | 2_1:+5354009 | Msa0189890:CDS |
CATTGTATTACCTTGCTTAT+TGG | 0.184117 | 2_1:+5354456 | Msa0189890:three_prime_UTR |
TAACTCATGTCAGTGCTTAT+TGG | 0.230250 | 2_1:+5354518 | Msa0189890:three_prime_UTR |
AGAGACCAAACGTGTGAAAA+TGG | 0.231254 | 2_1:+5354080 | Msa0189890:CDS |
TGTCTAACTGGAGACATATT+TGG | 0.294019 | 2_1:+5353300 | Msa0189890:CDS |
GTGAAAATGGGCCACGTCTA+TGG | 0.322087 | 2_1:+5354093 | Msa0189890:CDS |
GCTCCGTGCTTATAACTTAC+AGG | 0.341829 | 2_1:+5353446 | Msa0189890:CDS |
GCTGATCTTACCATACTTGC+TGG | 0.343338 | 2_1:+5351958 | Msa0189890:CDS |
CAGGGGTGTCAGCTCAAGAT+AGG | 0.349843 | 2_1:+5351806 | Msa0189890:CDS |
TCTTACCATACTTGCTGGTT+TGG | 0.362027 | 2_1:+5351963 | Msa0189890:CDS |
TGGCTCCAAACCAGCAAGTA+TGG | 0.366834 | 2_1:-5351968 | None:intergenic |
TTCTTTGGTGTCTGTTACAG+AGG | 0.383488 | 2_1:+5354431 | Msa0189890:three_prime_UTR |
GTATGATATATGTAGGTAAT+AGG | 0.383546 | 2_1:-5354202 | None:intergenic |
GAAGAATCAAATGTTGTTGC+TGG | 0.405283 | 2_1:+5354156 | Msa0189890:CDS |
CAGTCAAACCATAGCCTTTG+AGG | 0.405833 | 2_1:-5354002 | None:intergenic |
ATTTGATTCTTCAACAGTAT+TGG | 0.413785 | 2_1:-5354145 | None:intergenic |
TTTCAGATACTGAGGGATCT+AGG | 0.416479 | 2_1:+5353931 | Msa0189890:intron |
CTCTAAGTATCTCTTGTTCT+CGG | 0.416752 | 2_1:-5354061 | None:intergenic |
GTACACTCAGAGTGTCTAAC+TGG | 0.418207 | 2_1:+5353288 | Msa0189890:CDS |
TGAGCATATTGCAATGGTTA+AGG | 0.423972 | 2_1:+5353124 | Msa0189890:CDS |
GTGCCTTCTTGAAGAAAATC+AGG | 0.434371 | 2_1:-5354321 | None:intergenic |
ACAAAATATGTTGGCCTCAA+AGG | 0.435305 | 2_1:+5353988 | Msa0189890:CDS |
GAAGGAAGGGGTATTGGATT+GGG | 0.436773 | 2_1:+5353417 | Msa0189890:CDS |
CTGATTTCCACAGTCACATC+TGG | 0.442660 | 2_1:-5353328 | None:intergenic |
TGAAGGAAGGGGTATTGGAT+TGG | 0.444630 | 2_1:+5353416 | Msa0189890:CDS |
CCTGAAAATTGTATTGGTAA+TGG | 0.458617 | 2_1:-5354397 | None:intergenic |
GGACATGAAGGAAGGGGTAT+TGG | 0.459964 | 2_1:+5353411 | Msa0189890:CDS |
AAGAAAGAGAGATCAATTAG+TGG | 0.461335 | 2_1:+5353022 | Msa0189890:CDS |
AGAAAACCTGAAAATTGTAT+TGG | 0.463776 | 2_1:-5354403 | None:intergenic |
CAACTCCTCATTGGCTTCTA+CGG | 0.466646 | 2_1:-5353484 | None:intergenic |
TATCTATCGCTGACTTGATA+AGG | 0.467918 | 2_1:+5352085 | Msa0189890:CDS |
AGGCAATCCCAACTCCTCAT+TGG | 0.470707 | 2_1:-5353493 | None:intergenic |
ATGGCCTTATCTATAATGAT+TGG | 0.471805 | 2_1:-5354378 | None:intergenic |
CGTAGAAGCCAATGAGGAGT+TGG | 0.481823 | 2_1:+5353485 | Msa0189890:CDS |
GAGACCAAACGTGTGAAAAT+GGG | 0.484788 | 2_1:+5354081 | Msa0189890:CDS |
TTGGCAAATTCGCAGAGCTT+AGG | 0.488080 | 2_1:-5352042 | None:intergenic |
ATGGTTTGACTGTTTCTGGT+AGG | 0.495319 | 2_1:+5354013 | Msa0189890:CDS |
CAGATTGAGGCTGCCGGTAG+GGG | 0.496302 | 2_1:+5353369 | Msa0189890:CDS |
TATGTTGGCCTCAAAGGCTA+TGG | 0.502238 | 2_1:+5353994 | Msa0189890:CDS |
GCTAAACATGGTACCACCAC+AGG | 0.505229 | 2_1:+5351787 | Msa0189890:CDS |
AGTGCCAATCATTATAGATA+AGG | 0.507591 | 2_1:+5354374 | Msa0189890:three_prime_UTR |
ACAGATTGAGGCTGCCGGTA+GGG | 0.509746 | 2_1:+5353368 | Msa0189890:CDS |
GTTATAAGTCTCTGTTAGAC+GGG | 0.512110 | 2_1:+5353099 | Msa0189890:CDS |
ACGTGATAAGAGTTAACAAC+GGG | 0.514164 | 2_1:-5354038 | None:intergenic |
GCTTATAACTTACAGGATGA+TGG | 0.518705 | 2_1:+5353453 | Msa0189890:CDS |
TATATCATACACAACAAAAG+AGG | 0.522768 | 2_1:+5354215 | Msa0189890:three_prime_UTR |
GTAATTTGACAGGGTGACAT+TGG | 0.522822 | 2_1:+5353240 | Msa0189890:intron |
AACAATCCAACAAAATATGT+TGG | 0.531217 | 2_1:+5353979 | Msa0189890:CDS |
ACTTGCAATGGAACAGATTG+AGG | 0.536805 | 2_1:+5353356 | Msa0189890:CDS |
GGTGGTGTCTTGAAGAGAGC+TGG | 0.536885 | 2_1:+5351919 | Msa0189890:CDS |
GTAGAAGCCAATGAGGAGTT+GGG | 0.539865 | 2_1:+5353486 | Msa0189890:CDS |
AGATAGGGCAACTACAGTAT+TGG | 0.540764 | 2_1:+5351822 | Msa0189890:CDS |
AAATCAGCTTGCACTTGCAA+TGG | 0.545459 | 2_1:+5353344 | Msa0189890:CDS |
TTGTTGTGTATGATATATGT+AGG | 0.545690 | 2_1:-5354209 | None:intergenic |
CCTGGTCGGTTGAAATCAGC+CGG | 0.549582 | 2_1:-5351868 | None:intergenic |
AGTTATAAGCACGGAGCTTG+TGG | 0.552273 | 2_1:-5353440 | None:intergenic |
AGCAAGAATACCTACAATGT+GGG | 0.552655 | 2_1:+5353058 | Msa0189890:CDS |
TGACAGGGTGACATTGGAGA+TGG | 0.555270 | 2_1:+5353246 | Msa0189890:intron |
GAGTTGAATCTCTAGATGCA+AGG | 0.556953 | 2_1:-5351846 | None:intergenic |
ATCTCACACAGAACTGCCAC+TGG | 0.558496 | 2_1:-5351988 | None:intergenic |
ACTTGCTGGTTTGGAGCCAG+TGG | 0.560907 | 2_1:+5351972 | Msa0189890:CDS |
TGTTATAAGTCTCTGTTAGA+CGG | 0.563415 | 2_1:+5353098 | Msa0189890:CDS |
TGTAGATGATGACGGTTCCA+TGG | 0.564406 | 2_1:+5352011 | Msa0189890:CDS |
AGGGGTGTCAGCTCAAGATA+GGG | 0.566474 | 2_1:+5351807 | Msa0189890:CDS |
GCAAGAATACCTACAATGTG+GGG | 0.568107 | 2_1:+5353059 | Msa0189890:CDS |
TTATAACAGTATGATGTGAA+TGG | 0.568571 | 2_1:-5353083 | None:intergenic |
TTTAGTGGGAAAATATGGCC+TGG | 0.569452 | 2_1:-5351886 | None:intergenic |
ATATACAAGTACTCCCCTAC+CGG | 0.574412 | 2_1:-5353382 | None:intergenic |
TGGAGAAGATGTTCTTGTGA+GGG | 0.578569 | 2_1:+5353266 | Msa0189890:CDS |
CGGGATTGAGCATATTGCAA+TGG | 0.579779 | 2_1:+5353118 | Msa0189890:CDS |
CCGGCTGATTTCAACCGACC+AGG | 0.580455 | 2_1:+5351868 | Msa0189890:CDS |
ATCTACGCGGACATGAAGGA+AGG | 0.590429 | 2_1:+5353403 | Msa0189890:CDS |
GTGGGAAAATATGGCCTGGT+CGG | 0.598146 | 2_1:-5351882 | None:intergenic |
GTATATCTACGCGGACATGA+AGG | 0.601774 | 2_1:+5353399 | Msa0189890:CDS |
ATGGAACAGATTGAGGCTGC+CGG | 0.604204 | 2_1:+5353363 | Msa0189890:CDS |
TTCCCACTAAAATACAGGGA+TGG | 0.605130 | 2_1:+5351898 | Msa0189890:CDS |
AATGGGCCACGTCTATGGCA+TGG | 0.606179 | 2_1:+5354098 | Msa0189890:CDS |
ATGGAACTTAACAACGGCAA+TGG | 0.608599 | 2_1:+5354117 | Msa0189890:CDS |
CAGCAAGAATACCTACAATG+TGG | 0.617710 | 2_1:+5353057 | Msa0189890:CDS |
ATGGAGAAGATGTTCTTGTG+AGG | 0.618966 | 2_1:+5353265 | Msa0189890:CDS |
AGTTGAATCTCTAGATGCAA+GGG | 0.619240 | 2_1:-5351845 | None:intergenic |
GAGCTTAGGTAATCTAGCCA+TGG | 0.622161 | 2_1:-5352028 | None:intergenic |
TCTACGCGGACATGAAGGAA+GGG | 0.624885 | 2_1:+5353404 | Msa0189890:CDS |
CTAAACATGGTACCACCACA+GGG | 0.625510 | 2_1:+5351788 | Msa0189890:CDS |
TGCATCTAGAGATTCAACTC+CGG | 0.626692 | 2_1:+5351849 | Msa0189890:CDS |
CCACTAAAATACAGGGATGG+TGG | 0.628481 | 2_1:+5351901 | Msa0189890:CDS |
AACAGATTGAGGCTGCCGGT+AGG | 0.636736 | 2_1:+5353367 | Msa0189890:CDS |
TTGAGCTGACACCCCTGTGG+TGG | 0.636935 | 2_1:-5351800 | None:intergenic |
CTACGCGGACATGAAGGAAG+GGG | 0.637307 | 2_1:+5353405 | Msa0189890:CDS |
AGATTATATTCCAATAAGCA+AGG | 0.641533 | 2_1:-5354466 | None:intergenic |
TATTTGTAGGATGCTAAACA+TGG | 0.642940 | 2_1:+5351775 | Msa0189890:intron |
CATCCTGTAAGTTATAAGCA+CGG | 0.654892 | 2_1:-5353449 | None:intergenic |
TGTGAGATTGTAGATGATGA+CGG | 0.659733 | 2_1:+5352003 | Msa0189890:CDS |
CAAGAATACCTACAATGTGG+GGG | 0.677391 | 2_1:+5353060 | Msa0189890:CDS |
TAAGTTCCATGCCATAGACG+TGG | 0.678127 | 2_1:-5354104 | None:intergenic |
ATCTTGAGCTGACACCCCTG+TGG | 0.696438 | 2_1:-5351803 | None:intergenic |
TGATACCGTAGAAGCCAATG+AGG | 0.696608 | 2_1:+5353479 | Msa0189890:CDS |
GACGTGATAAGAGTTAACAA+CGG | 0.711055 | 2_1:-5354039 | None:intergenic |
TATGGCATGGAACTTAACAA+CGG | 0.722153 | 2_1:+5354111 | Msa0189890:CDS |
GGATCTGCCAGATGTGACTG+TGG | 0.728800 | 2_1:+5353321 | Msa0189890:CDS |
GGAGTACTTGTATATCTACG+CGG | 0.793030 | 2_1:+5353390 | Msa0189890:CDS |
TAAACATGGTACCACCACAG+GGG | 0.794302 | 2_1:+5351789 | Msa0189890:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACTATTTAAAATGTATTTGT+AGG | + | chr2_1:5351762-5351781 | Msa0189890:intron | 15.0% |
!! | TCTTATTATTTGCATATTTA+TGG | + | chr2_1:5352144-5352163 | Msa0189890:intron | 15.0% |
!!! | AATGGAATTTTTATATTTTC+TGG | + | chr2_1:5352402-5352421 | Msa0189890:intron | 15.0% |
!! | TTATTGTAAAAAATCCTTTA+TGG | - | chr2_1:5353579-5353598 | None:intergenic | 15.0% |
!!! | TGTTTATTAAAGAGATATTT+TGG | + | chr2_1:5353689-5353708 | Msa0189890:intron | 15.0% |
!!! | ATTTTAACTGTTTAAATACA+TGG | + | chr2_1:5353846-5353865 | Msa0189890:intron | 15.0% |
!!! | ATTAATTTATTGTCACTTTT+TGG | - | chr2_1:5354268-5354287 | None:intergenic | 15.0% |
!! | TTGATATCTCACAATATATA+TGG | + | chr2_1:5352235-5352254 | Msa0189890:intron | 20.0% |
!! | AAAAAAAAACTCCTATTCAA+TGG | + | chr2_1:5352445-5352464 | Msa0189890:intron | 20.0% |
!! | AATATATTAGAATTGCTCAA+TGG | + | chr2_1:5353551-5353570 | Msa0189890:intron | 20.0% |
!!! | TTTTACAATAACATTTTGAG+AGG | + | chr2_1:5353588-5353607 | Msa0189890:intron | 20.0% |
!! | ATTGACATTGTTCAATTAAA+TGG | + | chr2_1:5353724-5353743 | Msa0189890:intron | 20.0% |
! | TTAATCTGTTATGCTATTGA+AGG | + | chr2_1:5351685-5351704 | Msa0189890:intron | 25.0% |
!!! | TGTATTTTAGTGGGAAAATA+TGG | - | chr2_1:5351894-5351913 | None:intergenic | 25.0% |
!! | ATATTTTCCCACTAAAATAC+AGG | + | chr2_1:5351893-5351912 | Msa0189890:CDS | 25.0% |
!! | TATTTTCCCACTAAAATACA+GGG | + | chr2_1:5351894-5351913 | Msa0189890:CDS | 25.0% |
! | TATCAACTCATTTAGTATGT+TGG | - | chr2_1:5352221-5352240 | None:intergenic | 25.0% |
! | ACTAAATGATTGAACTAACT+CGG | + | chr2_1:5352270-5352289 | Msa0189890:intron | 25.0% |
! | TATAAAAATTCCATTCAGTG+AGG | - | chr2_1:5352397-5352416 | None:intergenic | 25.0% |
!!! | TTAACTTTAGGATCCAAATA+GGG | + | chr2_1:5352503-5352522 | Msa0189890:intron | 25.0% |
!! | ATAAAATGAAGGAACACTTT+TGG | + | chr2_1:5352529-5352548 | Msa0189890:intron | 25.0% |
!! | TACTGAACTTACTATTTTGT+TGG | - | chr2_1:5352661-5352680 | None:intergenic | 25.0% |
!!! | TTTATAAGTCTCGTTTTTCA+AGG | + | chr2_1:5352920-5352939 | Msa0189890:intron | 25.0% |
! | ACAAGGAGATTAAAACTTAT+TGG | + | chr2_1:5352985-5353004 | Msa0189890:intron | 25.0% |
! | TTATAACAGTATGATGTGAA+TGG | - | chr2_1:5353086-5353105 | None:intergenic | 25.0% |
! | TTGACTATTTGTAATTTGAC+AGG | + | chr2_1:5353230-5353249 | Msa0189890:intron | 25.0% |
! | TGACTATTTGTAATTTGACA+GGG | + | chr2_1:5353231-5353250 | Msa0189890:intron | 25.0% |
! | ACAATGTCAATTTAGTCATT+CGG | - | chr2_1:5353715-5353734 | None:intergenic | 25.0% |
! | AACAATCCAACAAAATATGT+TGG | + | chr2_1:5353979-5353998 | Msa0189890:CDS | 25.0% |
! | ATTTGATTCTTCAACAGTAT+TGG | - | chr2_1:5354148-5354167 | None:intergenic | 25.0% |
! | GTATGATATATGTAGGTAAT+AGG | - | chr2_1:5354205-5354224 | None:intergenic | 25.0% |
! | TTGTTGTGTATGATATATGT+AGG | - | chr2_1:5354212-5354231 | None:intergenic | 25.0% |
! | TATATCATACACAACAAAAG+AGG | + | chr2_1:5354215-5354234 | Msa0189890:three_prime_UTR | 25.0% |
! | AGAAAACCTGAAAATTGTAT+TGG | - | chr2_1:5354406-5354425 | None:intergenic | 25.0% |
! | AGATTATATTCCAATAAGCA+AGG | - | chr2_1:5354469-5354488 | None:intergenic | 25.0% |
! | GCAAAAATAATGAAGAAACT+TGG | - | chr2_1:5354493-5354512 | None:intergenic | 25.0% |
TTATGCTATTGAAGGAATTC+TGG | + | chr2_1:5351693-5351712 | Msa0189890:intron | 30.0% | |
TATTTGTAGGATGCTAAACA+TGG | + | chr2_1:5351775-5351794 | Msa0189890:intron | 30.0% | |
! | AATTTTCAAATTCTCACGCT+TGG | - | chr2_1:5352064-5352083 | None:intergenic | 30.0% |
AATCATTTAGTCACGATTCA+AGG | - | chr2_1:5352261-5352280 | None:intergenic | 30.0% | |
! | GTTCTTAATTTTGTCTGATG+AGG | + | chr2_1:5352301-5352320 | Msa0189890:intron | 30.0% |
TTTGTTAAAACCTCACTGAA+TGG | + | chr2_1:5352384-5352403 | Msa0189890:intron | 30.0% | |
TTCTATGAGAACCATTGAAT+AGG | - | chr2_1:5352459-5352478 | None:intergenic | 30.0% | |
TCAATGGTTCTCATAGAAAA+TGG | + | chr2_1:5352461-5352480 | Msa0189890:intron | 30.0% | |
CAATGGTTCTCATAGAAAAT+GGG | + | chr2_1:5352462-5352481 | Msa0189890:intron | 30.0% | |
AATGGTTCTCATAGAAAATG+GGG | + | chr2_1:5352463-5352482 | Msa0189890:intron | 30.0% | |
GAGAGAAAGATGTTAACTTT+AGG | + | chr2_1:5352491-5352510 | Msa0189890:intron | 30.0% | |
!! | GTTAACTTTAGGATCCAAAT+AGG | + | chr2_1:5352502-5352521 | Msa0189890:intron | 30.0% |
! | TTCATTTTATCCACCCTATT+TGG | - | chr2_1:5352519-5352538 | None:intergenic | 30.0% |
AAATAGGGTGGATAAAATGA+AGG | + | chr2_1:5352518-5352537 | Msa0189890:intron | 30.0% | |
ACTATAGTAATGTATCACTC+AGG | + | chr2_1:5352560-5352579 | Msa0189890:intron | 30.0% | |
AAGTCATTAGAGCGAAAATT+GGG | + | chr2_1:5352749-5352768 | Msa0189890:intron | 30.0% | |
TTGCTTATTTGGTCATAACA+AGG | + | chr2_1:5352968-5352987 | Msa0189890:intron | 30.0% | |
AAGAAAGAGAGATCAATTAG+TGG | + | chr2_1:5353022-5353041 | Msa0189890:CDS | 30.0% | |
TGTTATAAGTCTCTGTTAGA+CGG | + | chr2_1:5353098-5353117 | Msa0189890:CDS | 30.0% | |
TGTATATAATACAGTTTCCG+TGG | + | chr2_1:5353160-5353179 | Msa0189890:intron | 30.0% | |
! | CACTAAGTGTTGCAAAATAT+AGG | - | chr2_1:5353191-5353210 | None:intergenic | 30.0% |
! | TATTTTGCAACACTTAGTGA+TGG | + | chr2_1:5353192-5353211 | Msa0189890:intron | 30.0% |
! | ATTTTGCAACACTTAGTGAT+GGG | + | chr2_1:5353193-5353212 | Msa0189890:intron | 30.0% |
TTCAGTCATTGAAACTGTAA+GGG | - | chr2_1:5353789-5353808 | None:intergenic | 30.0% | |
TTTCAGTCATTGAAACTGTA+AGG | - | chr2_1:5353790-5353809 | None:intergenic | 30.0% | |
GAAAAAGTAGTAACATTCCA+AGG | - | chr2_1:5353915-5353934 | None:intergenic | 30.0% | |
!!! | TACTACTTTTTCAGATACTG+AGG | + | chr2_1:5353923-5353942 | Msa0189890:intron | 30.0% |
!!! | ACTACTTTTTCAGATACTGA+GGG | + | chr2_1:5353924-5353943 | Msa0189890:intron | 30.0% |
TAATAGGTAAAAAGAAGGCA+TGG | - | chr2_1:5354189-5354208 | None:intergenic | 30.0% | |
GTAGGTAATAGGTAAAAAGA+AGG | - | chr2_1:5354194-5354213 | None:intergenic | 30.0% | |
AGTGCCAATCATTATAGATA+AGG | + | chr2_1:5354374-5354393 | Msa0189890:three_prime_UTR | 30.0% | |
!! | ATGGCCTTATCTATAATGAT+TGG | - | chr2_1:5354381-5354400 | None:intergenic | 30.0% |
! | CCTGAAAATTGTATTGGTAA+TGG | - | chr2_1:5354400-5354419 | None:intergenic | 30.0% |
! | CCATTACCAATACAATTTTC+AGG | + | chr2_1:5354397-5354416 | Msa0189890:three_prime_UTR | 30.0% |
CATTGTATTACCTTGCTTAT+TGG | + | chr2_1:5354456-5354475 | Msa0189890:three_prime_UTR | 30.0% | |
!! | TGAAGGAATTCTGGTTTGAA+CGG | + | chr2_1:5351702-5351721 | Msa0189890:intron | 35.0% |
AGTTGAATCTCTAGATGCAA+GGG | - | chr2_1:5351848-5351867 | None:intergenic | 35.0% | |
TGTGAGATTGTAGATGATGA+CGG | + | chr2_1:5352003-5352022 | Msa0189890:CDS | 35.0% | |
!! | TATCTATCGCTGACTTGATA+AGG | + | chr2_1:5352085-5352104 | Msa0189890:CDS | 35.0% |
TTGAACTAACTCGGACTTTA+TGG | + | chr2_1:5352279-5352298 | Msa0189890:intron | 35.0% | |
TGTTGTATGAGACTGTATGT+TGG | + | chr2_1:5352624-5352643 | Msa0189890:intron | 35.0% | |
GAACGTTACATTGAATGAGT+TGG | + | chr2_1:5352698-5352717 | Msa0189890:intron | 35.0% | |
ACACAAGACAAGACATAATC+AGG | + | chr2_1:5352722-5352741 | Msa0189890:intron | 35.0% | |
CAAGTCATTAGAGCGAAAAT+TGG | + | chr2_1:5352748-5352767 | Msa0189890:intron | 35.0% | |
AGTCATTAGAGCGAAAATTG+GGG | + | chr2_1:5352750-5352769 | Msa0189890:intron | 35.0% | |
!! | TTTTCAAGGTTTTTGCTGTC+TGG | + | chr2_1:5352934-5352953 | Msa0189890:intron | 35.0% |
!! | TTTCAAGGTTTTTGCTGTCT+GGG | + | chr2_1:5352935-5352954 | Msa0189890:intron | 35.0% |
! | GATGCTTCTTGTTGCTTATT+TGG | + | chr2_1:5352957-5352976 | Msa0189890:intron | 35.0% |
AGCAAGAATACCTACAATGT+GGG | + | chr2_1:5353058-5353077 | Msa0189890:CDS | 35.0% | |
GTTATAAGTCTCTGTTAGAC+GGG | + | chr2_1:5353099-5353118 | Msa0189890:CDS | 35.0% | |
TGAGCATATTGCAATGGTTA+AGG | + | chr2_1:5353124-5353143 | Msa0189890:CDS | 35.0% | |
GCAAAATATAGGTAGTTCCA+CGG | - | chr2_1:5353180-5353199 | None:intergenic | 35.0% | |
!!! | TTAGTGATGGGTTTTTGACA+AGG | + | chr2_1:5353205-5353224 | Msa0189890:intron | 35.0% |
TGTCTAACTGGAGACATATT+TGG | + | chr2_1:5353300-5353319 | Msa0189890:CDS | 35.0% | |
CATCCTGTAAGTTATAAGCA+CGG | - | chr2_1:5353452-5353471 | None:intergenic | 35.0% | |
GCTTATAACTTACAGGATGA+TGG | + | chr2_1:5353453-5353472 | Msa0189890:CDS | 35.0% | |
ATTGCTCAATGGTTCCATAA+AGG | + | chr2_1:5353562-5353581 | Msa0189890:intron | 35.0% | |
ATGGAAAGTTATCACAGACA+TGG | + | chr2_1:5353883-5353902 | Msa0189890:intron | 35.0% | |
! | TTGAGGCCAACATATTTTGT+TGG | - | chr2_1:5353988-5354007 | None:intergenic | 35.0% |
! | ACAAAATATGTTGGCCTCAA+AGG | + | chr2_1:5353988-5354007 | Msa0189890:CDS | 35.0% |
ACGTGATAAGAGTTAACAAC+GGG | - | chr2_1:5354041-5354060 | None:intergenic | 35.0% | |
GACGTGATAAGAGTTAACAA+CGG | - | chr2_1:5354042-5354061 | None:intergenic | 35.0% | |
CTCTAAGTATCTCTTGTTCT+CGG | - | chr2_1:5354064-5354083 | None:intergenic | 35.0% | |
TATGGCATGGAACTTAACAA+CGG | + | chr2_1:5354111-5354130 | Msa0189890:CDS | 35.0% | |
GAAGAATCAAATGTTGTTGC+TGG | + | chr2_1:5354156-5354175 | Msa0189890:CDS | 35.0% | |
! | TTGCCTGATTTTCTTCAAGA+AGG | + | chr2_1:5354318-5354337 | Msa0189890:three_prime_UTR | 35.0% |
! | CAGGTTTTCTTGTCTTTCTT+TGG | + | chr2_1:5354416-5354435 | Msa0189890:three_prime_UTR | 35.0% |
TAACTCATGTCAGTGCTTAT+TGG | + | chr2_1:5354518-5354537 | Msa0189890:three_prime_UTR | 35.0% | |
!! | GAAGGAATTCTGGTTTGAAC+GGG | + | chr2_1:5351703-5351722 | Msa0189890:intron | 40.0% |
!! | AAGGAATTCTGGTTTGAACG+GGG | + | chr2_1:5351704-5351723 | Msa0189890:intron | 40.0% |
AGATAGGGCAACTACAGTAT+TGG | + | chr2_1:5351822-5351841 | Msa0189890:CDS | 40.0% | |
GAGTTGAATCTCTAGATGCA+AGG | - | chr2_1:5351849-5351868 | None:intergenic | 40.0% | |
TGCATCTAGAGATTCAACTC+CGG | + | chr2_1:5351849-5351868 | Msa0189890:CDS | 40.0% | |
TTTAGTGGGAAAATATGGCC+TGG | - | chr2_1:5351889-5351908 | None:intergenic | 40.0% | |
TTCCCACTAAAATACAGGGA+TGG | + | chr2_1:5351898-5351917 | Msa0189890:CDS | 40.0% | |
!!! | CACCATCCCTGTATTTTAGT+GGG | - | chr2_1:5351903-5351922 | None:intergenic | 40.0% |
! | TCTTACCATACTTGCTGGTT+TGG | + | chr2_1:5351963-5351982 | Msa0189890:CDS | 40.0% |
!! | ATCGCTGACTTGATAAGGTA+TGG | + | chr2_1:5352090-5352109 | Msa0189890:intron | 40.0% |
!! | ACTTTAGGATCCAAATAGGG+TGG | + | chr2_1:5352506-5352525 | Msa0189890:intron | 40.0% |
ATGTATCACTCAGGCTTAGA+AGG | + | chr2_1:5352569-5352588 | Msa0189890:intron | 40.0% | |
ACAGTCTCATACAACACTGT+AGG | - | chr2_1:5352620-5352639 | None:intergenic | 40.0% | |
AGTTCAGTATTCCAGAGATG+AGG | + | chr2_1:5352672-5352691 | Msa0189890:intron | 40.0% | |
! | CTCTACCATTTTCCTACAGT+GGG | - | chr2_1:5352781-5352800 | None:intergenic | 40.0% |
! | ACTCTACCATTTTCCTACAG+TGG | - | chr2_1:5352782-5352801 | None:intergenic | 40.0% |
GTACTTAAACCACATAAGCC+AGG | - | chr2_1:5352805-5352824 | None:intergenic | 40.0% | |
!! | CATTCATAGAAGCACTGACT+AGG | + | chr2_1:5352835-5352854 | Msa0189890:intron | 40.0% |
GAATTTGACTACCCTGTATC+TGG | - | chr2_1:5352869-5352888 | None:intergenic | 40.0% | |
CAGCAAGAATACCTACAATG+TGG | + | chr2_1:5353057-5353076 | Msa0189890:CDS | 40.0% | |
GCAAGAATACCTACAATGTG+GGG | + | chr2_1:5353059-5353078 | Msa0189890:CDS | 40.0% | |
CAAGAATACCTACAATGTGG+GGG | + | chr2_1:5353060-5353079 | Msa0189890:CDS | 40.0% | |
GTAATTTGACAGGGTGACAT+TGG | + | chr2_1:5353240-5353259 | Msa0189890:intron | 40.0% | |
ATGGAGAAGATGTTCTTGTG+AGG | + | chr2_1:5353265-5353284 | Msa0189890:CDS | 40.0% | |
TGGAGAAGATGTTCTTGTGA+GGG | + | chr2_1:5353266-5353285 | Msa0189890:CDS | 40.0% | |
AAATCAGCTTGCACTTGCAA+TGG | + | chr2_1:5353344-5353363 | Msa0189890:CDS | 40.0% | |
ACTTGCAATGGAACAGATTG+AGG | + | chr2_1:5353356-5353375 | Msa0189890:CDS | 40.0% | |
ATATACAAGTACTCCCCTAC+CGG | - | chr2_1:5353385-5353404 | None:intergenic | 40.0% | |
! | GGAGTACTTGTATATCTACG+CGG | + | chr2_1:5353390-5353409 | Msa0189890:CDS | 40.0% |
GTCATTGAAACTGTAAGGGT+CGG | - | chr2_1:5353785-5353804 | None:intergenic | 40.0% | |
CATGGTGATCACTGTTGTTA+TGG | + | chr2_1:5353864-5353883 | Msa0189890:intron | 40.0% | |
TTTCAGATACTGAGGGATCT+AGG | + | chr2_1:5353931-5353950 | Msa0189890:intron | 40.0% | |
!! | ATGGTTTGACTGTTTCTGGT+AGG | + | chr2_1:5354013-5354032 | Msa0189890:CDS | 40.0% |
AGAGACCAAACGTGTGAAAA+TGG | + | chr2_1:5354080-5354099 | Msa0189890:CDS | 40.0% | |
GAGACCAAACGTGTGAAAAT+GGG | + | chr2_1:5354081-5354100 | Msa0189890:CDS | 40.0% | |
ATGGAACTTAACAACGGCAA+TGG | + | chr2_1:5354117-5354136 | Msa0189890:CDS | 40.0% | |
GTGCCTTCTTGAAGAAAATC+AGG | - | chr2_1:5354324-5354343 | None:intergenic | 40.0% | |
!! | TTCTTTGGTGTCTGTTACAG+AGG | + | chr2_1:5354431-5354450 | Msa0189890:three_prime_UTR | 40.0% |
!! | ATTCTGGTTTGAACGGGGTT+AGG | + | chr2_1:5351709-5351728 | Msa0189890:intron | 45.0% |
CTAAACATGGTACCACCACA+GGG | + | chr2_1:5351788-5351807 | Msa0189890:CDS | 45.0% | |
TAAACATGGTACCACCACAG+GGG | + | chr2_1:5351789-5351808 | Msa0189890:CDS | 45.0% | |
!! | CCACCATCCCTGTATTTTAG+TGG | - | chr2_1:5351904-5351923 | None:intergenic | 45.0% |
CCACTAAAATACAGGGATGG+TGG | + | chr2_1:5351901-5351920 | Msa0189890:CDS | 45.0% | |
GCTGATCTTACCATACTTGC+TGG | + | chr2_1:5351958-5351977 | Msa0189890:CDS | 45.0% | |
!! | TGTAGATGATGACGGTTCCA+TGG | + | chr2_1:5352011-5352030 | Msa0189890:CDS | 45.0% |
GAGCTTAGGTAATCTAGCCA+TGG | - | chr2_1:5352031-5352050 | None:intergenic | 45.0% | |
TTGGCAAATTCGCAGAGCTT+AGG | - | chr2_1:5352045-5352064 | None:intergenic | 45.0% | |
!! | GCTGACTTGATAAGGTATGG+TGG | + | chr2_1:5352093-5352112 | Msa0189890:intron | 45.0% |
TAACGTTCTCACCTCATCTC+TGG | - | chr2_1:5352686-5352705 | None:intergenic | 45.0% | |
TAGCTCCCACTGTAGGAAAA+TGG | + | chr2_1:5352773-5352792 | Msa0189890:intron | 45.0% | |
GTAGGAAAATGGTAGAGTCC+TGG | + | chr2_1:5352784-5352803 | Msa0189890:intron | 45.0% | |
!! | CATAGAAGCACTGACTAGGA+AGG | + | chr2_1:5352839-5352858 | Msa0189890:intron | 45.0% |
TAGGAAGGTAGACCAGATAC+AGG | + | chr2_1:5352854-5352873 | Msa0189890:intron | 45.0% | |
AGGAAGGTAGACCAGATACA+GGG | + | chr2_1:5352855-5352874 | Msa0189890:intron | 45.0% | |
CGGGATTGAGCATATTGCAA+TGG | + | chr2_1:5353118-5353137 | Msa0189890:CDS | 45.0% | |
! | GTACACTCAGAGTGTCTAAC+TGG | + | chr2_1:5353288-5353307 | Msa0189890:CDS | 45.0% |
CTGATTTCCACAGTCACATC+TGG | - | chr2_1:5353331-5353350 | None:intergenic | 45.0% | |
GTATATCTACGCGGACATGA+AGG | + | chr2_1:5353399-5353418 | Msa0189890:CDS | 45.0% | |
!! | TGAAGGAAGGGGTATTGGAT+TGG | + | chr2_1:5353416-5353435 | Msa0189890:CDS | 45.0% |
!! | GAAGGAAGGGGTATTGGATT+GGG | + | chr2_1:5353417-5353436 | Msa0189890:CDS | 45.0% |
AGTTATAAGCACGGAGCTTG+TGG | - | chr2_1:5353443-5353462 | None:intergenic | 45.0% | |
GCTCCGTGCTTATAACTTAC+AGG | + | chr2_1:5353446-5353465 | Msa0189890:CDS | 45.0% | |
TGATACCGTAGAAGCCAATG+AGG | + | chr2_1:5353479-5353498 | Msa0189890:CDS | 45.0% | |
!! | CAACTCCTCATTGGCTTCTA+CGG | - | chr2_1:5353487-5353506 | None:intergenic | 45.0% |
GTAGAAGCCAATGAGGAGTT+GGG | + | chr2_1:5353486-5353505 | Msa0189890:CDS | 45.0% | |
CCATATTCCCTAGAGTCAAC+AGG | - | chr2_1:5353516-5353535 | None:intergenic | 45.0% | |
!! | CCTGTTGACTCTAGGGAATA+TGG | + | chr2_1:5353513-5353532 | Msa0189890:intron | 45.0% |
! | GACTCTAGGGAATATGGCAT+AGG | + | chr2_1:5353519-5353538 | Msa0189890:intron | 45.0% |
CACAGACATGGCTTAAACCT+TGG | + | chr2_1:5353895-5353914 | Msa0189890:intron | 45.0% | |
! | TATGTTGGCCTCAAAGGCTA+TGG | + | chr2_1:5353994-5354013 | Msa0189890:CDS | 45.0% |
CAGTCAAACCATAGCCTTTG+AGG | - | chr2_1:5354005-5354024 | None:intergenic | 45.0% | |
GGCTATGGTTTGACTGTTTC+TGG | + | chr2_1:5354009-5354028 | Msa0189890:CDS | 45.0% | |
TAAGTTCCATGCCATAGACG+TGG | - | chr2_1:5354107-5354126 | None:intergenic | 45.0% | |
GCTAAACATGGTACCACCAC+AGG | + | chr2_1:5351787-5351806 | Msa0189890:CDS | 50.0% | |
!! | AGGGGTGTCAGCTCAAGATA+GGG | + | chr2_1:5351807-5351826 | Msa0189890:CDS | 50.0% |
GTGGGAAAATATGGCCTGGT+CGG | - | chr2_1:5351885-5351904 | None:intergenic | 50.0% | |
TGGCTCCAAACCAGCAAGTA+TGG | - | chr2_1:5351971-5351990 | None:intergenic | 50.0% | |
ATCTCACACAGAACTGCCAC+TGG | - | chr2_1:5351991-5352010 | None:intergenic | 50.0% | |
TGGTAGAGTCCTGGCTTATG+TGG | + | chr2_1:5352793-5352812 | Msa0189890:intron | 50.0% | |
TGACAGGGTGACATTGGAGA+TGG | + | chr2_1:5353246-5353265 | Msa0189890:intron | 50.0% | |
ATGGAACAGATTGAGGCTGC+CGG | + | chr2_1:5353363-5353382 | Msa0189890:CDS | 50.0% | |
ATCTACGCGGACATGAAGGA+AGG | + | chr2_1:5353403-5353422 | Msa0189890:CDS | 50.0% | |
TCTACGCGGACATGAAGGAA+GGG | + | chr2_1:5353404-5353423 | Msa0189890:CDS | 50.0% | |
! | GGACATGAAGGAAGGGGTAT+TGG | + | chr2_1:5353411-5353430 | Msa0189890:CDS | 50.0% |
CGTAGAAGCCAATGAGGAGT+TGG | + | chr2_1:5353485-5353504 | Msa0189890:CDS | 50.0% | |
AGGCAATCCCAACTCCTCAT+TGG | - | chr2_1:5353496-5353515 | None:intergenic | 50.0% | |
!! | TGGGATTGCCTGTTGACTCT+AGG | + | chr2_1:5353505-5353524 | Msa0189890:intron | 50.0% |
!! | GGGATTGCCTGTTGACTCTA+GGG | + | chr2_1:5353506-5353525 | Msa0189890:intron | 50.0% |
AAACTGTAAGGGTCGGTCTG+AGG | - | chr2_1:5353778-5353797 | None:intergenic | 50.0% | |
! | GTGGCCCATTTTCACACGTT+TGG | - | chr2_1:5354088-5354107 | None:intergenic | 50.0% |
GTGAAAATGGGCCACGTCTA+TGG | + | chr2_1:5354093-5354112 | Msa0189890:CDS | 50.0% | |
ATCTTGAGCTGACACCCCTG+TGG | - | chr2_1:5351806-5351825 | None:intergenic | 55.0% | |
!! | CAGGGGTGTCAGCTCAAGAT+AGG | + | chr2_1:5351806-5351825 | Msa0189890:CDS | 55.0% |
CCTGGTCGGTTGAAATCAGC+CGG | - | chr2_1:5351871-5351890 | None:intergenic | 55.0% | |
GGTGGTGTCTTGAAGAGAGC+TGG | + | chr2_1:5351919-5351938 | Msa0189890:CDS | 55.0% | |
!! | ACTTGCTGGTTTGGAGCCAG+TGG | + | chr2_1:5351972-5351991 | Msa0189890:CDS | 55.0% |
ATTGGGGTAGCTCCCACTGT+AGG | + | chr2_1:5352766-5352785 | Msa0189890:intron | 55.0% | |
GTGAATGGCCCCCACATTGT+AGG | - | chr2_1:5353071-5353090 | None:intergenic | 55.0% | |
GGATCTGCCAGATGTGACTG+TGG | + | chr2_1:5353321-5353340 | Msa0189890:CDS | 55.0% | |
AACAGATTGAGGCTGCCGGT+AGG | + | chr2_1:5353367-5353386 | Msa0189890:CDS | 55.0% | |
ACAGATTGAGGCTGCCGGTA+GGG | + | chr2_1:5353368-5353387 | Msa0189890:CDS | 55.0% | |
CTACGCGGACATGAAGGAAG+GGG | + | chr2_1:5353405-5353424 | Msa0189890:CDS | 55.0% | |
GGAATATGGCATAGGCGCAC+AGG | + | chr2_1:5353527-5353546 | Msa0189890:intron | 55.0% | |
AATGGGCCACGTCTATGGCA+TGG | + | chr2_1:5354098-5354117 | Msa0189890:CDS | 55.0% | |
TTGAGCTGACACCCCTGTGG+TGG | - | chr2_1:5351803-5351822 | None:intergenic | 60.0% | |
! | CCGGCTGATTTCAACCGACC+AGG | + | chr2_1:5351868-5351887 | Msa0189890:CDS | 60.0% |
CAGATTGAGGCTGCCGGTAG+GGG | + | chr2_1:5353369-5353388 | Msa0189890:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 5351654 | 5354553 | 5351654 | ID=Msa0189890;Name=Msa0189890 |
chr2_1 | mRNA | 5351654 | 5354553 | 5351654 | ID=Msa0189890-mRNA-1;Parent=Msa0189890;Name=Msa0189890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.4|0.8|1|1|5|368|322 |
chr2_1 | exon | 5351654 | 5351656 | 5351654 | ID=Msa0189890-mRNA-1:exon:2397;Parent=Msa0189890-mRNA-1 |
chr2_1 | exon | 5351784 | 5352106 | 5351784 | ID=Msa0189890-mRNA-1:exon:2398;Parent=Msa0189890-mRNA-1 |
chr2_1 | exon | 5353016 | 5353145 | 5353016 | ID=Msa0189890-mRNA-1:exon:2399;Parent=Msa0189890-mRNA-1 |
chr2_1 | exon | 5353252 | 5353515 | 5353252 | ID=Msa0189890-mRNA-1:exon:2400;Parent=Msa0189890-mRNA-1 |
chr2_1 | exon | 5353937 | 5354553 | 5353937 | ID=Msa0189890-mRNA-1:exon:2401;Parent=Msa0189890-mRNA-1 |
chr2_1 | CDS | 5351654 | 5351656 | 5351654 | ID=Msa0189890-mRNA-1:cds;Parent=Msa0189890-mRNA-1 |
chr2_1 | CDS | 5351784 | 5352106 | 5351784 | ID=Msa0189890-mRNA-1:cds;Parent=Msa0189890-mRNA-1 |
chr2_1 | CDS | 5353016 | 5353145 | 5353016 | ID=Msa0189890-mRNA-1:cds;Parent=Msa0189890-mRNA-1 |
chr2_1 | CDS | 5353252 | 5353515 | 5353252 | ID=Msa0189890-mRNA-1:cds;Parent=Msa0189890-mRNA-1 |
chr2_1 | CDS | 5353937 | 5354185 | 5353937 | ID=Msa0189890-mRNA-1:cds;Parent=Msa0189890-mRNA-1 |
chr2_1 | three_prime_UTR | 5354186 | 5354553 | 5354186 | ID=Msa0189890-mRNA-1:three_prime_utr;Parent=Msa0189890-mRNA-1 |
Gene Sequence |
Protein sequence |