AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0189890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0189890 MtrunA17_Chr2g0279401 95.495 333 4 1 1 322 209 541 0.0 646
Msa0189890 MtrunA17_Chr4g0050151 81.381 333 50 2 1 321 202 534 0.0 565
Msa0189890 MtrunA17_Chr2g0327771 68.571 315 87 2 1 303 193 507 5.73e-156 446
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0189890 AT5G64300.1 82.803 314 43 1 1 303 216 529 0.0 551
Msa0189890 AT5G59750.1 68.454 317 88 2 1 305 189 505 6.24e-158 451
Msa0189890 AT5G59750.2 68.454 317 88 2 1 305 223 539 1.05e-157 452
Msa0189890 AT2G22450.1 68.551 283 82 3 1 278 194 474 8.68e-140 404
Msa0189890 AT5G59750.3 72.727 242 65 1 1 241 189 430 2.69e-126 369

Find 102 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTATGGTTTGACTGTTTC+TGG 0.114584 2_1:+5354009 Msa0189890:CDS
CATTGTATTACCTTGCTTAT+TGG 0.184117 2_1:+5354456 Msa0189890:three_prime_UTR
TAACTCATGTCAGTGCTTAT+TGG 0.230250 2_1:+5354518 Msa0189890:three_prime_UTR
AGAGACCAAACGTGTGAAAA+TGG 0.231254 2_1:+5354080 Msa0189890:CDS
TGTCTAACTGGAGACATATT+TGG 0.294019 2_1:+5353300 Msa0189890:CDS
GTGAAAATGGGCCACGTCTA+TGG 0.322087 2_1:+5354093 Msa0189890:CDS
GCTCCGTGCTTATAACTTAC+AGG 0.341829 2_1:+5353446 Msa0189890:CDS
GCTGATCTTACCATACTTGC+TGG 0.343338 2_1:+5351958 Msa0189890:CDS
CAGGGGTGTCAGCTCAAGAT+AGG 0.349843 2_1:+5351806 Msa0189890:CDS
TCTTACCATACTTGCTGGTT+TGG 0.362027 2_1:+5351963 Msa0189890:CDS
TGGCTCCAAACCAGCAAGTA+TGG 0.366834 2_1:-5351968 None:intergenic
TTCTTTGGTGTCTGTTACAG+AGG 0.383488 2_1:+5354431 Msa0189890:three_prime_UTR
GTATGATATATGTAGGTAAT+AGG 0.383546 2_1:-5354202 None:intergenic
GAAGAATCAAATGTTGTTGC+TGG 0.405283 2_1:+5354156 Msa0189890:CDS
CAGTCAAACCATAGCCTTTG+AGG 0.405833 2_1:-5354002 None:intergenic
ATTTGATTCTTCAACAGTAT+TGG 0.413785 2_1:-5354145 None:intergenic
TTTCAGATACTGAGGGATCT+AGG 0.416479 2_1:+5353931 Msa0189890:intron
CTCTAAGTATCTCTTGTTCT+CGG 0.416752 2_1:-5354061 None:intergenic
GTACACTCAGAGTGTCTAAC+TGG 0.418207 2_1:+5353288 Msa0189890:CDS
TGAGCATATTGCAATGGTTA+AGG 0.423972 2_1:+5353124 Msa0189890:CDS
GTGCCTTCTTGAAGAAAATC+AGG 0.434371 2_1:-5354321 None:intergenic
ACAAAATATGTTGGCCTCAA+AGG 0.435305 2_1:+5353988 Msa0189890:CDS
GAAGGAAGGGGTATTGGATT+GGG 0.436773 2_1:+5353417 Msa0189890:CDS
CTGATTTCCACAGTCACATC+TGG 0.442660 2_1:-5353328 None:intergenic
TGAAGGAAGGGGTATTGGAT+TGG 0.444630 2_1:+5353416 Msa0189890:CDS
CCTGAAAATTGTATTGGTAA+TGG 0.458617 2_1:-5354397 None:intergenic
GGACATGAAGGAAGGGGTAT+TGG 0.459964 2_1:+5353411 Msa0189890:CDS
AAGAAAGAGAGATCAATTAG+TGG 0.461335 2_1:+5353022 Msa0189890:CDS
AGAAAACCTGAAAATTGTAT+TGG 0.463776 2_1:-5354403 None:intergenic
CAACTCCTCATTGGCTTCTA+CGG 0.466646 2_1:-5353484 None:intergenic
TATCTATCGCTGACTTGATA+AGG 0.467918 2_1:+5352085 Msa0189890:CDS
AGGCAATCCCAACTCCTCAT+TGG 0.470707 2_1:-5353493 None:intergenic
ATGGCCTTATCTATAATGAT+TGG 0.471805 2_1:-5354378 None:intergenic
CGTAGAAGCCAATGAGGAGT+TGG 0.481823 2_1:+5353485 Msa0189890:CDS
GAGACCAAACGTGTGAAAAT+GGG 0.484788 2_1:+5354081 Msa0189890:CDS
TTGGCAAATTCGCAGAGCTT+AGG 0.488080 2_1:-5352042 None:intergenic
ATGGTTTGACTGTTTCTGGT+AGG 0.495319 2_1:+5354013 Msa0189890:CDS
CAGATTGAGGCTGCCGGTAG+GGG 0.496302 2_1:+5353369 Msa0189890:CDS
TATGTTGGCCTCAAAGGCTA+TGG 0.502238 2_1:+5353994 Msa0189890:CDS
GCTAAACATGGTACCACCAC+AGG 0.505229 2_1:+5351787 Msa0189890:CDS
AGTGCCAATCATTATAGATA+AGG 0.507591 2_1:+5354374 Msa0189890:three_prime_UTR
ACAGATTGAGGCTGCCGGTA+GGG 0.509746 2_1:+5353368 Msa0189890:CDS
GTTATAAGTCTCTGTTAGAC+GGG 0.512110 2_1:+5353099 Msa0189890:CDS
ACGTGATAAGAGTTAACAAC+GGG 0.514164 2_1:-5354038 None:intergenic
GCTTATAACTTACAGGATGA+TGG 0.518705 2_1:+5353453 Msa0189890:CDS
TATATCATACACAACAAAAG+AGG 0.522768 2_1:+5354215 Msa0189890:three_prime_UTR
GTAATTTGACAGGGTGACAT+TGG 0.522822 2_1:+5353240 Msa0189890:intron
AACAATCCAACAAAATATGT+TGG 0.531217 2_1:+5353979 Msa0189890:CDS
ACTTGCAATGGAACAGATTG+AGG 0.536805 2_1:+5353356 Msa0189890:CDS
GGTGGTGTCTTGAAGAGAGC+TGG 0.536885 2_1:+5351919 Msa0189890:CDS
GTAGAAGCCAATGAGGAGTT+GGG 0.539865 2_1:+5353486 Msa0189890:CDS
AGATAGGGCAACTACAGTAT+TGG 0.540764 2_1:+5351822 Msa0189890:CDS
AAATCAGCTTGCACTTGCAA+TGG 0.545459 2_1:+5353344 Msa0189890:CDS
TTGTTGTGTATGATATATGT+AGG 0.545690 2_1:-5354209 None:intergenic
CCTGGTCGGTTGAAATCAGC+CGG 0.549582 2_1:-5351868 None:intergenic
AGTTATAAGCACGGAGCTTG+TGG 0.552273 2_1:-5353440 None:intergenic
AGCAAGAATACCTACAATGT+GGG 0.552655 2_1:+5353058 Msa0189890:CDS
TGACAGGGTGACATTGGAGA+TGG 0.555270 2_1:+5353246 Msa0189890:intron
GAGTTGAATCTCTAGATGCA+AGG 0.556953 2_1:-5351846 None:intergenic
ATCTCACACAGAACTGCCAC+TGG 0.558496 2_1:-5351988 None:intergenic
ACTTGCTGGTTTGGAGCCAG+TGG 0.560907 2_1:+5351972 Msa0189890:CDS
TGTTATAAGTCTCTGTTAGA+CGG 0.563415 2_1:+5353098 Msa0189890:CDS
TGTAGATGATGACGGTTCCA+TGG 0.564406 2_1:+5352011 Msa0189890:CDS
AGGGGTGTCAGCTCAAGATA+GGG 0.566474 2_1:+5351807 Msa0189890:CDS
GCAAGAATACCTACAATGTG+GGG 0.568107 2_1:+5353059 Msa0189890:CDS
TTATAACAGTATGATGTGAA+TGG 0.568571 2_1:-5353083 None:intergenic
TTTAGTGGGAAAATATGGCC+TGG 0.569452 2_1:-5351886 None:intergenic
ATATACAAGTACTCCCCTAC+CGG 0.574412 2_1:-5353382 None:intergenic
TGGAGAAGATGTTCTTGTGA+GGG 0.578569 2_1:+5353266 Msa0189890:CDS
CGGGATTGAGCATATTGCAA+TGG 0.579779 2_1:+5353118 Msa0189890:CDS
CCGGCTGATTTCAACCGACC+AGG 0.580455 2_1:+5351868 Msa0189890:CDS
ATCTACGCGGACATGAAGGA+AGG 0.590429 2_1:+5353403 Msa0189890:CDS
GTGGGAAAATATGGCCTGGT+CGG 0.598146 2_1:-5351882 None:intergenic
GTATATCTACGCGGACATGA+AGG 0.601774 2_1:+5353399 Msa0189890:CDS
ATGGAACAGATTGAGGCTGC+CGG 0.604204 2_1:+5353363 Msa0189890:CDS
TTCCCACTAAAATACAGGGA+TGG 0.605130 2_1:+5351898 Msa0189890:CDS
AATGGGCCACGTCTATGGCA+TGG 0.606179 2_1:+5354098 Msa0189890:CDS
ATGGAACTTAACAACGGCAA+TGG 0.608599 2_1:+5354117 Msa0189890:CDS
CAGCAAGAATACCTACAATG+TGG 0.617710 2_1:+5353057 Msa0189890:CDS
ATGGAGAAGATGTTCTTGTG+AGG 0.618966 2_1:+5353265 Msa0189890:CDS
AGTTGAATCTCTAGATGCAA+GGG 0.619240 2_1:-5351845 None:intergenic
GAGCTTAGGTAATCTAGCCA+TGG 0.622161 2_1:-5352028 None:intergenic
TCTACGCGGACATGAAGGAA+GGG 0.624885 2_1:+5353404 Msa0189890:CDS
CTAAACATGGTACCACCACA+GGG 0.625510 2_1:+5351788 Msa0189890:CDS
TGCATCTAGAGATTCAACTC+CGG 0.626692 2_1:+5351849 Msa0189890:CDS
CCACTAAAATACAGGGATGG+TGG 0.628481 2_1:+5351901 Msa0189890:CDS
AACAGATTGAGGCTGCCGGT+AGG 0.636736 2_1:+5353367 Msa0189890:CDS
TTGAGCTGACACCCCTGTGG+TGG 0.636935 2_1:-5351800 None:intergenic
CTACGCGGACATGAAGGAAG+GGG 0.637307 2_1:+5353405 Msa0189890:CDS
AGATTATATTCCAATAAGCA+AGG 0.641533 2_1:-5354466 None:intergenic
TATTTGTAGGATGCTAAACA+TGG 0.642940 2_1:+5351775 Msa0189890:intron
CATCCTGTAAGTTATAAGCA+CGG 0.654892 2_1:-5353449 None:intergenic
TGTGAGATTGTAGATGATGA+CGG 0.659733 2_1:+5352003 Msa0189890:CDS
CAAGAATACCTACAATGTGG+GGG 0.677391 2_1:+5353060 Msa0189890:CDS
TAAGTTCCATGCCATAGACG+TGG 0.678127 2_1:-5354104 None:intergenic
ATCTTGAGCTGACACCCCTG+TGG 0.696438 2_1:-5351803 None:intergenic
TGATACCGTAGAAGCCAATG+AGG 0.696608 2_1:+5353479 Msa0189890:CDS
GACGTGATAAGAGTTAACAA+CGG 0.711055 2_1:-5354039 None:intergenic
TATGGCATGGAACTTAACAA+CGG 0.722153 2_1:+5354111 Msa0189890:CDS
GGATCTGCCAGATGTGACTG+TGG 0.728800 2_1:+5353321 Msa0189890:CDS
GGAGTACTTGTATATCTACG+CGG 0.793030 2_1:+5353390 Msa0189890:CDS
TAAACATGGTACCACCACAG+GGG 0.794302 2_1:+5351789 Msa0189890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTATTTAAAATGTATTTGT+AGG + chr2_1:5351762-5351781 Msa0189890:intron 15.0%
!! TCTTATTATTTGCATATTTA+TGG + chr2_1:5352144-5352163 Msa0189890:intron 15.0%
!!! AATGGAATTTTTATATTTTC+TGG + chr2_1:5352402-5352421 Msa0189890:intron 15.0%
!! TTATTGTAAAAAATCCTTTA+TGG - chr2_1:5353579-5353598 None:intergenic 15.0%
!!! TGTTTATTAAAGAGATATTT+TGG + chr2_1:5353689-5353708 Msa0189890:intron 15.0%
!!! ATTTTAACTGTTTAAATACA+TGG + chr2_1:5353846-5353865 Msa0189890:intron 15.0%
!!! ATTAATTTATTGTCACTTTT+TGG - chr2_1:5354268-5354287 None:intergenic 15.0%
!! TTGATATCTCACAATATATA+TGG + chr2_1:5352235-5352254 Msa0189890:intron 20.0%
!! AAAAAAAAACTCCTATTCAA+TGG + chr2_1:5352445-5352464 Msa0189890:intron 20.0%
!! AATATATTAGAATTGCTCAA+TGG + chr2_1:5353551-5353570 Msa0189890:intron 20.0%
!!! TTTTACAATAACATTTTGAG+AGG + chr2_1:5353588-5353607 Msa0189890:intron 20.0%
!! ATTGACATTGTTCAATTAAA+TGG + chr2_1:5353724-5353743 Msa0189890:intron 20.0%
! TTAATCTGTTATGCTATTGA+AGG + chr2_1:5351685-5351704 Msa0189890:intron 25.0%
!!! TGTATTTTAGTGGGAAAATA+TGG - chr2_1:5351894-5351913 None:intergenic 25.0%
!! ATATTTTCCCACTAAAATAC+AGG + chr2_1:5351893-5351912 Msa0189890:CDS 25.0%
!! TATTTTCCCACTAAAATACA+GGG + chr2_1:5351894-5351913 Msa0189890:CDS 25.0%
! TATCAACTCATTTAGTATGT+TGG - chr2_1:5352221-5352240 None:intergenic 25.0%
! ACTAAATGATTGAACTAACT+CGG + chr2_1:5352270-5352289 Msa0189890:intron 25.0%
! TATAAAAATTCCATTCAGTG+AGG - chr2_1:5352397-5352416 None:intergenic 25.0%
!!! TTAACTTTAGGATCCAAATA+GGG + chr2_1:5352503-5352522 Msa0189890:intron 25.0%
!! ATAAAATGAAGGAACACTTT+TGG + chr2_1:5352529-5352548 Msa0189890:intron 25.0%
!! TACTGAACTTACTATTTTGT+TGG - chr2_1:5352661-5352680 None:intergenic 25.0%
!!! TTTATAAGTCTCGTTTTTCA+AGG + chr2_1:5352920-5352939 Msa0189890:intron 25.0%
! ACAAGGAGATTAAAACTTAT+TGG + chr2_1:5352985-5353004 Msa0189890:intron 25.0%
! TTATAACAGTATGATGTGAA+TGG - chr2_1:5353086-5353105 None:intergenic 25.0%
! TTGACTATTTGTAATTTGAC+AGG + chr2_1:5353230-5353249 Msa0189890:intron 25.0%
! TGACTATTTGTAATTTGACA+GGG + chr2_1:5353231-5353250 Msa0189890:intron 25.0%
! ACAATGTCAATTTAGTCATT+CGG - chr2_1:5353715-5353734 None:intergenic 25.0%
! AACAATCCAACAAAATATGT+TGG + chr2_1:5353979-5353998 Msa0189890:CDS 25.0%
! ATTTGATTCTTCAACAGTAT+TGG - chr2_1:5354148-5354167 None:intergenic 25.0%
! GTATGATATATGTAGGTAAT+AGG - chr2_1:5354205-5354224 None:intergenic 25.0%
! TTGTTGTGTATGATATATGT+AGG - chr2_1:5354212-5354231 None:intergenic 25.0%
! TATATCATACACAACAAAAG+AGG + chr2_1:5354215-5354234 Msa0189890:three_prime_UTR 25.0%
! AGAAAACCTGAAAATTGTAT+TGG - chr2_1:5354406-5354425 None:intergenic 25.0%
! AGATTATATTCCAATAAGCA+AGG - chr2_1:5354469-5354488 None:intergenic 25.0%
! GCAAAAATAATGAAGAAACT+TGG - chr2_1:5354493-5354512 None:intergenic 25.0%
TTATGCTATTGAAGGAATTC+TGG + chr2_1:5351693-5351712 Msa0189890:intron 30.0%
TATTTGTAGGATGCTAAACA+TGG + chr2_1:5351775-5351794 Msa0189890:intron 30.0%
! AATTTTCAAATTCTCACGCT+TGG - chr2_1:5352064-5352083 None:intergenic 30.0%
AATCATTTAGTCACGATTCA+AGG - chr2_1:5352261-5352280 None:intergenic 30.0%
! GTTCTTAATTTTGTCTGATG+AGG + chr2_1:5352301-5352320 Msa0189890:intron 30.0%
TTTGTTAAAACCTCACTGAA+TGG + chr2_1:5352384-5352403 Msa0189890:intron 30.0%
TTCTATGAGAACCATTGAAT+AGG - chr2_1:5352459-5352478 None:intergenic 30.0%
TCAATGGTTCTCATAGAAAA+TGG + chr2_1:5352461-5352480 Msa0189890:intron 30.0%
CAATGGTTCTCATAGAAAAT+GGG + chr2_1:5352462-5352481 Msa0189890:intron 30.0%
AATGGTTCTCATAGAAAATG+GGG + chr2_1:5352463-5352482 Msa0189890:intron 30.0%
GAGAGAAAGATGTTAACTTT+AGG + chr2_1:5352491-5352510 Msa0189890:intron 30.0%
!! GTTAACTTTAGGATCCAAAT+AGG + chr2_1:5352502-5352521 Msa0189890:intron 30.0%
! TTCATTTTATCCACCCTATT+TGG - chr2_1:5352519-5352538 None:intergenic 30.0%
AAATAGGGTGGATAAAATGA+AGG + chr2_1:5352518-5352537 Msa0189890:intron 30.0%
ACTATAGTAATGTATCACTC+AGG + chr2_1:5352560-5352579 Msa0189890:intron 30.0%
AAGTCATTAGAGCGAAAATT+GGG + chr2_1:5352749-5352768 Msa0189890:intron 30.0%
TTGCTTATTTGGTCATAACA+AGG + chr2_1:5352968-5352987 Msa0189890:intron 30.0%
AAGAAAGAGAGATCAATTAG+TGG + chr2_1:5353022-5353041 Msa0189890:CDS 30.0%
TGTTATAAGTCTCTGTTAGA+CGG + chr2_1:5353098-5353117 Msa0189890:CDS 30.0%
TGTATATAATACAGTTTCCG+TGG + chr2_1:5353160-5353179 Msa0189890:intron 30.0%
! CACTAAGTGTTGCAAAATAT+AGG - chr2_1:5353191-5353210 None:intergenic 30.0%
! TATTTTGCAACACTTAGTGA+TGG + chr2_1:5353192-5353211 Msa0189890:intron 30.0%
! ATTTTGCAACACTTAGTGAT+GGG + chr2_1:5353193-5353212 Msa0189890:intron 30.0%
TTCAGTCATTGAAACTGTAA+GGG - chr2_1:5353789-5353808 None:intergenic 30.0%
TTTCAGTCATTGAAACTGTA+AGG - chr2_1:5353790-5353809 None:intergenic 30.0%
GAAAAAGTAGTAACATTCCA+AGG - chr2_1:5353915-5353934 None:intergenic 30.0%
!!! TACTACTTTTTCAGATACTG+AGG + chr2_1:5353923-5353942 Msa0189890:intron 30.0%
!!! ACTACTTTTTCAGATACTGA+GGG + chr2_1:5353924-5353943 Msa0189890:intron 30.0%
TAATAGGTAAAAAGAAGGCA+TGG - chr2_1:5354189-5354208 None:intergenic 30.0%
GTAGGTAATAGGTAAAAAGA+AGG - chr2_1:5354194-5354213 None:intergenic 30.0%
AGTGCCAATCATTATAGATA+AGG + chr2_1:5354374-5354393 Msa0189890:three_prime_UTR 30.0%
!! ATGGCCTTATCTATAATGAT+TGG - chr2_1:5354381-5354400 None:intergenic 30.0%
! CCTGAAAATTGTATTGGTAA+TGG - chr2_1:5354400-5354419 None:intergenic 30.0%
! CCATTACCAATACAATTTTC+AGG + chr2_1:5354397-5354416 Msa0189890:three_prime_UTR 30.0%
CATTGTATTACCTTGCTTAT+TGG + chr2_1:5354456-5354475 Msa0189890:three_prime_UTR 30.0%
!! TGAAGGAATTCTGGTTTGAA+CGG + chr2_1:5351702-5351721 Msa0189890:intron 35.0%
AGTTGAATCTCTAGATGCAA+GGG - chr2_1:5351848-5351867 None:intergenic 35.0%
TGTGAGATTGTAGATGATGA+CGG + chr2_1:5352003-5352022 Msa0189890:CDS 35.0%
!! TATCTATCGCTGACTTGATA+AGG + chr2_1:5352085-5352104 Msa0189890:CDS 35.0%
TTGAACTAACTCGGACTTTA+TGG + chr2_1:5352279-5352298 Msa0189890:intron 35.0%
TGTTGTATGAGACTGTATGT+TGG + chr2_1:5352624-5352643 Msa0189890:intron 35.0%
GAACGTTACATTGAATGAGT+TGG + chr2_1:5352698-5352717 Msa0189890:intron 35.0%
ACACAAGACAAGACATAATC+AGG + chr2_1:5352722-5352741 Msa0189890:intron 35.0%
CAAGTCATTAGAGCGAAAAT+TGG + chr2_1:5352748-5352767 Msa0189890:intron 35.0%
AGTCATTAGAGCGAAAATTG+GGG + chr2_1:5352750-5352769 Msa0189890:intron 35.0%
!! TTTTCAAGGTTTTTGCTGTC+TGG + chr2_1:5352934-5352953 Msa0189890:intron 35.0%
!! TTTCAAGGTTTTTGCTGTCT+GGG + chr2_1:5352935-5352954 Msa0189890:intron 35.0%
! GATGCTTCTTGTTGCTTATT+TGG + chr2_1:5352957-5352976 Msa0189890:intron 35.0%
AGCAAGAATACCTACAATGT+GGG + chr2_1:5353058-5353077 Msa0189890:CDS 35.0%
GTTATAAGTCTCTGTTAGAC+GGG + chr2_1:5353099-5353118 Msa0189890:CDS 35.0%
TGAGCATATTGCAATGGTTA+AGG + chr2_1:5353124-5353143 Msa0189890:CDS 35.0%
GCAAAATATAGGTAGTTCCA+CGG - chr2_1:5353180-5353199 None:intergenic 35.0%
!!! TTAGTGATGGGTTTTTGACA+AGG + chr2_1:5353205-5353224 Msa0189890:intron 35.0%
TGTCTAACTGGAGACATATT+TGG + chr2_1:5353300-5353319 Msa0189890:CDS 35.0%
CATCCTGTAAGTTATAAGCA+CGG - chr2_1:5353452-5353471 None:intergenic 35.0%
GCTTATAACTTACAGGATGA+TGG + chr2_1:5353453-5353472 Msa0189890:CDS 35.0%
ATTGCTCAATGGTTCCATAA+AGG + chr2_1:5353562-5353581 Msa0189890:intron 35.0%
ATGGAAAGTTATCACAGACA+TGG + chr2_1:5353883-5353902 Msa0189890:intron 35.0%
! TTGAGGCCAACATATTTTGT+TGG - chr2_1:5353988-5354007 None:intergenic 35.0%
! ACAAAATATGTTGGCCTCAA+AGG + chr2_1:5353988-5354007 Msa0189890:CDS 35.0%
ACGTGATAAGAGTTAACAAC+GGG - chr2_1:5354041-5354060 None:intergenic 35.0%
GACGTGATAAGAGTTAACAA+CGG - chr2_1:5354042-5354061 None:intergenic 35.0%
CTCTAAGTATCTCTTGTTCT+CGG - chr2_1:5354064-5354083 None:intergenic 35.0%
TATGGCATGGAACTTAACAA+CGG + chr2_1:5354111-5354130 Msa0189890:CDS 35.0%
GAAGAATCAAATGTTGTTGC+TGG + chr2_1:5354156-5354175 Msa0189890:CDS 35.0%
! TTGCCTGATTTTCTTCAAGA+AGG + chr2_1:5354318-5354337 Msa0189890:three_prime_UTR 35.0%
! CAGGTTTTCTTGTCTTTCTT+TGG + chr2_1:5354416-5354435 Msa0189890:three_prime_UTR 35.0%
TAACTCATGTCAGTGCTTAT+TGG + chr2_1:5354518-5354537 Msa0189890:three_prime_UTR 35.0%
!! GAAGGAATTCTGGTTTGAAC+GGG + chr2_1:5351703-5351722 Msa0189890:intron 40.0%
!! AAGGAATTCTGGTTTGAACG+GGG + chr2_1:5351704-5351723 Msa0189890:intron 40.0%
AGATAGGGCAACTACAGTAT+TGG + chr2_1:5351822-5351841 Msa0189890:CDS 40.0%
GAGTTGAATCTCTAGATGCA+AGG - chr2_1:5351849-5351868 None:intergenic 40.0%
TGCATCTAGAGATTCAACTC+CGG + chr2_1:5351849-5351868 Msa0189890:CDS 40.0%
TTTAGTGGGAAAATATGGCC+TGG - chr2_1:5351889-5351908 None:intergenic 40.0%
TTCCCACTAAAATACAGGGA+TGG + chr2_1:5351898-5351917 Msa0189890:CDS 40.0%
!!! CACCATCCCTGTATTTTAGT+GGG - chr2_1:5351903-5351922 None:intergenic 40.0%
! TCTTACCATACTTGCTGGTT+TGG + chr2_1:5351963-5351982 Msa0189890:CDS 40.0%
!! ATCGCTGACTTGATAAGGTA+TGG + chr2_1:5352090-5352109 Msa0189890:intron 40.0%
!! ACTTTAGGATCCAAATAGGG+TGG + chr2_1:5352506-5352525 Msa0189890:intron 40.0%
ATGTATCACTCAGGCTTAGA+AGG + chr2_1:5352569-5352588 Msa0189890:intron 40.0%
ACAGTCTCATACAACACTGT+AGG - chr2_1:5352620-5352639 None:intergenic 40.0%
AGTTCAGTATTCCAGAGATG+AGG + chr2_1:5352672-5352691 Msa0189890:intron 40.0%
! CTCTACCATTTTCCTACAGT+GGG - chr2_1:5352781-5352800 None:intergenic 40.0%
! ACTCTACCATTTTCCTACAG+TGG - chr2_1:5352782-5352801 None:intergenic 40.0%
GTACTTAAACCACATAAGCC+AGG - chr2_1:5352805-5352824 None:intergenic 40.0%
!! CATTCATAGAAGCACTGACT+AGG + chr2_1:5352835-5352854 Msa0189890:intron 40.0%
GAATTTGACTACCCTGTATC+TGG - chr2_1:5352869-5352888 None:intergenic 40.0%
CAGCAAGAATACCTACAATG+TGG + chr2_1:5353057-5353076 Msa0189890:CDS 40.0%
GCAAGAATACCTACAATGTG+GGG + chr2_1:5353059-5353078 Msa0189890:CDS 40.0%
CAAGAATACCTACAATGTGG+GGG + chr2_1:5353060-5353079 Msa0189890:CDS 40.0%
GTAATTTGACAGGGTGACAT+TGG + chr2_1:5353240-5353259 Msa0189890:intron 40.0%
ATGGAGAAGATGTTCTTGTG+AGG + chr2_1:5353265-5353284 Msa0189890:CDS 40.0%
TGGAGAAGATGTTCTTGTGA+GGG + chr2_1:5353266-5353285 Msa0189890:CDS 40.0%
AAATCAGCTTGCACTTGCAA+TGG + chr2_1:5353344-5353363 Msa0189890:CDS 40.0%
ACTTGCAATGGAACAGATTG+AGG + chr2_1:5353356-5353375 Msa0189890:CDS 40.0%
ATATACAAGTACTCCCCTAC+CGG - chr2_1:5353385-5353404 None:intergenic 40.0%
! GGAGTACTTGTATATCTACG+CGG + chr2_1:5353390-5353409 Msa0189890:CDS 40.0%
GTCATTGAAACTGTAAGGGT+CGG - chr2_1:5353785-5353804 None:intergenic 40.0%
CATGGTGATCACTGTTGTTA+TGG + chr2_1:5353864-5353883 Msa0189890:intron 40.0%
TTTCAGATACTGAGGGATCT+AGG + chr2_1:5353931-5353950 Msa0189890:intron 40.0%
!! ATGGTTTGACTGTTTCTGGT+AGG + chr2_1:5354013-5354032 Msa0189890:CDS 40.0%
AGAGACCAAACGTGTGAAAA+TGG + chr2_1:5354080-5354099 Msa0189890:CDS 40.0%
GAGACCAAACGTGTGAAAAT+GGG + chr2_1:5354081-5354100 Msa0189890:CDS 40.0%
ATGGAACTTAACAACGGCAA+TGG + chr2_1:5354117-5354136 Msa0189890:CDS 40.0%
GTGCCTTCTTGAAGAAAATC+AGG - chr2_1:5354324-5354343 None:intergenic 40.0%
!! TTCTTTGGTGTCTGTTACAG+AGG + chr2_1:5354431-5354450 Msa0189890:three_prime_UTR 40.0%
!! ATTCTGGTTTGAACGGGGTT+AGG + chr2_1:5351709-5351728 Msa0189890:intron 45.0%
CTAAACATGGTACCACCACA+GGG + chr2_1:5351788-5351807 Msa0189890:CDS 45.0%
TAAACATGGTACCACCACAG+GGG + chr2_1:5351789-5351808 Msa0189890:CDS 45.0%
!! CCACCATCCCTGTATTTTAG+TGG - chr2_1:5351904-5351923 None:intergenic 45.0%
CCACTAAAATACAGGGATGG+TGG + chr2_1:5351901-5351920 Msa0189890:CDS 45.0%
GCTGATCTTACCATACTTGC+TGG + chr2_1:5351958-5351977 Msa0189890:CDS 45.0%
!! TGTAGATGATGACGGTTCCA+TGG + chr2_1:5352011-5352030 Msa0189890:CDS 45.0%
GAGCTTAGGTAATCTAGCCA+TGG - chr2_1:5352031-5352050 None:intergenic 45.0%
TTGGCAAATTCGCAGAGCTT+AGG - chr2_1:5352045-5352064 None:intergenic 45.0%
!! GCTGACTTGATAAGGTATGG+TGG + chr2_1:5352093-5352112 Msa0189890:intron 45.0%
TAACGTTCTCACCTCATCTC+TGG - chr2_1:5352686-5352705 None:intergenic 45.0%
TAGCTCCCACTGTAGGAAAA+TGG + chr2_1:5352773-5352792 Msa0189890:intron 45.0%
GTAGGAAAATGGTAGAGTCC+TGG + chr2_1:5352784-5352803 Msa0189890:intron 45.0%
!! CATAGAAGCACTGACTAGGA+AGG + chr2_1:5352839-5352858 Msa0189890:intron 45.0%
TAGGAAGGTAGACCAGATAC+AGG + chr2_1:5352854-5352873 Msa0189890:intron 45.0%
AGGAAGGTAGACCAGATACA+GGG + chr2_1:5352855-5352874 Msa0189890:intron 45.0%
CGGGATTGAGCATATTGCAA+TGG + chr2_1:5353118-5353137 Msa0189890:CDS 45.0%
! GTACACTCAGAGTGTCTAAC+TGG + chr2_1:5353288-5353307 Msa0189890:CDS 45.0%
CTGATTTCCACAGTCACATC+TGG - chr2_1:5353331-5353350 None:intergenic 45.0%
GTATATCTACGCGGACATGA+AGG + chr2_1:5353399-5353418 Msa0189890:CDS 45.0%
!! TGAAGGAAGGGGTATTGGAT+TGG + chr2_1:5353416-5353435 Msa0189890:CDS 45.0%
!! GAAGGAAGGGGTATTGGATT+GGG + chr2_1:5353417-5353436 Msa0189890:CDS 45.0%
AGTTATAAGCACGGAGCTTG+TGG - chr2_1:5353443-5353462 None:intergenic 45.0%
GCTCCGTGCTTATAACTTAC+AGG + chr2_1:5353446-5353465 Msa0189890:CDS 45.0%
TGATACCGTAGAAGCCAATG+AGG + chr2_1:5353479-5353498 Msa0189890:CDS 45.0%
!! CAACTCCTCATTGGCTTCTA+CGG - chr2_1:5353487-5353506 None:intergenic 45.0%
GTAGAAGCCAATGAGGAGTT+GGG + chr2_1:5353486-5353505 Msa0189890:CDS 45.0%
CCATATTCCCTAGAGTCAAC+AGG - chr2_1:5353516-5353535 None:intergenic 45.0%
!! CCTGTTGACTCTAGGGAATA+TGG + chr2_1:5353513-5353532 Msa0189890:intron 45.0%
! GACTCTAGGGAATATGGCAT+AGG + chr2_1:5353519-5353538 Msa0189890:intron 45.0%
CACAGACATGGCTTAAACCT+TGG + chr2_1:5353895-5353914 Msa0189890:intron 45.0%
! TATGTTGGCCTCAAAGGCTA+TGG + chr2_1:5353994-5354013 Msa0189890:CDS 45.0%
CAGTCAAACCATAGCCTTTG+AGG - chr2_1:5354005-5354024 None:intergenic 45.0%
GGCTATGGTTTGACTGTTTC+TGG + chr2_1:5354009-5354028 Msa0189890:CDS 45.0%
TAAGTTCCATGCCATAGACG+TGG - chr2_1:5354107-5354126 None:intergenic 45.0%
GCTAAACATGGTACCACCAC+AGG + chr2_1:5351787-5351806 Msa0189890:CDS 50.0%
!! AGGGGTGTCAGCTCAAGATA+GGG + chr2_1:5351807-5351826 Msa0189890:CDS 50.0%
GTGGGAAAATATGGCCTGGT+CGG - chr2_1:5351885-5351904 None:intergenic 50.0%
TGGCTCCAAACCAGCAAGTA+TGG - chr2_1:5351971-5351990 None:intergenic 50.0%
ATCTCACACAGAACTGCCAC+TGG - chr2_1:5351991-5352010 None:intergenic 50.0%
TGGTAGAGTCCTGGCTTATG+TGG + chr2_1:5352793-5352812 Msa0189890:intron 50.0%
TGACAGGGTGACATTGGAGA+TGG + chr2_1:5353246-5353265 Msa0189890:intron 50.0%
ATGGAACAGATTGAGGCTGC+CGG + chr2_1:5353363-5353382 Msa0189890:CDS 50.0%
ATCTACGCGGACATGAAGGA+AGG + chr2_1:5353403-5353422 Msa0189890:CDS 50.0%
TCTACGCGGACATGAAGGAA+GGG + chr2_1:5353404-5353423 Msa0189890:CDS 50.0%
! GGACATGAAGGAAGGGGTAT+TGG + chr2_1:5353411-5353430 Msa0189890:CDS 50.0%
CGTAGAAGCCAATGAGGAGT+TGG + chr2_1:5353485-5353504 Msa0189890:CDS 50.0%
AGGCAATCCCAACTCCTCAT+TGG - chr2_1:5353496-5353515 None:intergenic 50.0%
!! TGGGATTGCCTGTTGACTCT+AGG + chr2_1:5353505-5353524 Msa0189890:intron 50.0%
!! GGGATTGCCTGTTGACTCTA+GGG + chr2_1:5353506-5353525 Msa0189890:intron 50.0%
AAACTGTAAGGGTCGGTCTG+AGG - chr2_1:5353778-5353797 None:intergenic 50.0%
! GTGGCCCATTTTCACACGTT+TGG - chr2_1:5354088-5354107 None:intergenic 50.0%
GTGAAAATGGGCCACGTCTA+TGG + chr2_1:5354093-5354112 Msa0189890:CDS 50.0%
ATCTTGAGCTGACACCCCTG+TGG - chr2_1:5351806-5351825 None:intergenic 55.0%
!! CAGGGGTGTCAGCTCAAGAT+AGG + chr2_1:5351806-5351825 Msa0189890:CDS 55.0%
CCTGGTCGGTTGAAATCAGC+CGG - chr2_1:5351871-5351890 None:intergenic 55.0%
GGTGGTGTCTTGAAGAGAGC+TGG + chr2_1:5351919-5351938 Msa0189890:CDS 55.0%
!! ACTTGCTGGTTTGGAGCCAG+TGG + chr2_1:5351972-5351991 Msa0189890:CDS 55.0%
ATTGGGGTAGCTCCCACTGT+AGG + chr2_1:5352766-5352785 Msa0189890:intron 55.0%
GTGAATGGCCCCCACATTGT+AGG - chr2_1:5353071-5353090 None:intergenic 55.0%
GGATCTGCCAGATGTGACTG+TGG + chr2_1:5353321-5353340 Msa0189890:CDS 55.0%
AACAGATTGAGGCTGCCGGT+AGG + chr2_1:5353367-5353386 Msa0189890:CDS 55.0%
ACAGATTGAGGCTGCCGGTA+GGG + chr2_1:5353368-5353387 Msa0189890:CDS 55.0%
CTACGCGGACATGAAGGAAG+GGG + chr2_1:5353405-5353424 Msa0189890:CDS 55.0%
GGAATATGGCATAGGCGCAC+AGG + chr2_1:5353527-5353546 Msa0189890:intron 55.0%
AATGGGCCACGTCTATGGCA+TGG + chr2_1:5354098-5354117 Msa0189890:CDS 55.0%
TTGAGCTGACACCCCTGTGG+TGG - chr2_1:5351803-5351822 None:intergenic 60.0%
! CCGGCTGATTTCAACCGACC+AGG + chr2_1:5351868-5351887 Msa0189890:CDS 60.0%
CAGATTGAGGCTGCCGGTAG+GGG + chr2_1:5353369-5353388 Msa0189890:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 5351654 5354553 5351654 ID=Msa0189890;Name=Msa0189890
chr2_1 mRNA 5351654 5354553 5351654 ID=Msa0189890-mRNA-1;Parent=Msa0189890;Name=Msa0189890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.4|0.8|1|1|5|368|322
chr2_1 exon 5351654 5351656 5351654 ID=Msa0189890-mRNA-1:exon:2397;Parent=Msa0189890-mRNA-1
chr2_1 exon 5351784 5352106 5351784 ID=Msa0189890-mRNA-1:exon:2398;Parent=Msa0189890-mRNA-1
chr2_1 exon 5353016 5353145 5353016 ID=Msa0189890-mRNA-1:exon:2399;Parent=Msa0189890-mRNA-1
chr2_1 exon 5353252 5353515 5353252 ID=Msa0189890-mRNA-1:exon:2400;Parent=Msa0189890-mRNA-1
chr2_1 exon 5353937 5354553 5353937 ID=Msa0189890-mRNA-1:exon:2401;Parent=Msa0189890-mRNA-1
chr2_1 CDS 5351654 5351656 5351654 ID=Msa0189890-mRNA-1:cds;Parent=Msa0189890-mRNA-1
chr2_1 CDS 5351784 5352106 5351784 ID=Msa0189890-mRNA-1:cds;Parent=Msa0189890-mRNA-1
chr2_1 CDS 5353016 5353145 5353016 ID=Msa0189890-mRNA-1:cds;Parent=Msa0189890-mRNA-1
chr2_1 CDS 5353252 5353515 5353252 ID=Msa0189890-mRNA-1:cds;Parent=Msa0189890-mRNA-1
chr2_1 CDS 5353937 5354185 5353937 ID=Msa0189890-mRNA-1:cds;Parent=Msa0189890-mRNA-1
chr2_1 three_prime_UTR 5354186 5354553 5354186 ID=Msa0189890-mRNA-1:three_prime_utr;Parent=Msa0189890-mRNA-1
Gene Sequence

>Msa0189890

ATGGATGCTAAACATGGTACCACCACAGGGGTGTCAGCTCAAGATAGGGCAACTACAGTATTGGCCCTTGCATCTAGAGATTCAACTCCGGCTGATTTCAACCGACCAGGCCATATTTTCCCACTAAAATACAGGGATGGTGGTGTCTTGAAGAGAGCTGGACATACAGAAGCTTCAGCTGATCTTACCATACTTGCTGGTTTGGAGCCAGTGGCAGTTCTGTGTGAGATTGTAGATGATGACGGTTCCATGGCTAGATTACCTAAGCTCTGCGAATTTGCCAAGCGTGAGAATTTGAAAATTGTATCTATCGCTGACTTGATAAGATATAGAAGAAAGAGAGATCAATTAGTGGAACGTTCTTCTGCAGCAAGAATACCTACAATGTGGGGGCCATTCACATCATACTGTTATAAGTCTCTGTTAGACGGGATTGAGCATATTGCAATGGTTAAGGGTGACATTGGAGATGGAGAAGATGTTCTTGTGAGGGTACACTCAGAGTGTCTAACTGGAGACATATTTGGATCTGCCAGATGTGACTGTGGAAATCAGCTTGCACTTGCAATGGAACAGATTGAGGCTGCCGGTAGGGGAGTACTTGTATATCTACGCGGACATGAAGGAAGGGGTATTGGATTGGGCCACAAGCTCCGTGCTTATAACTTACAGGATGATGGACGTGATACCGTAGAAGCCAATGAGGAGTTGGGATTGCCTATACTGAGGGATCTAGGCGTTAAATCTATGAAGTTGATGACAAACAATCCAACAAAATATGTTGGCCTCAAAGGCTATGGTTTGACTGTTTCTGGTAGGATCCCGTTGTTAACTCTTATCACGTCCGAGAACAAGAGATACTTAGAGACCAAACGTGTGAAAATGGGCCACGTCTATGGCATGGAACTTAACAACGGCAATGGTAAAACCAATACTGTTGAAGAATCAAATGTTGTTGCTGGCTTTTGA

Protein sequence

>Msa0189890

MDAKHGTTTGVSAQDRATTVLALASRDSTPADFNRPGHIFPLKYRDGGVLKRAGHTEASADLTILAGLEPVAVLCEIVDDDGSMARLPKLCEFAKRENLKIVSIADLIRYRRKRDQLVERSSAARIPTMWGPFTSYCYKSLLDGIEHIAMVKGDIGDGEDVLVRVHSECLTGDIFGSARCDCGNQLALAMEQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPILRDLGVKSMKLMTNNPTKYVGLKGYGLTVSGRIPLLTLITSENKRYLETKRVKMGHVYGMELNNGNGKTNTVEESNVVAGF*