AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0865830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0865830 MtrunA17_Chr5g0447941 97.756 312 7 0 1 312 1 312 0.0 630
Msa0865830 MtrunA17_Chr5g0447951 97.436 312 8 0 1 312 1 312 0.0 629
Msa0865830 MtrunA17_Chr5g0447961 97.436 312 8 0 1 312 1 312 0.0 629
Msa0865830 MtrunA17_Chr3g0121001 68.506 308 96 1 6 312 7 314 1.14e-163 458
Msa0865830 MtrunA17_Chr1g0173621 62.951 305 110 3 1 302 1 305 5.27e-138 393
Msa0865830 MtrunA17_Chr6g0479981 50.165 303 144 5 1 300 1 299 7.72e-97 288
Msa0865830 MtrunA17_Chr6g0480011 49.355 310 138 8 1 300 1 301 1.38e-95 285
Msa0865830 MtrunA17_Chr6g0480021 48.366 306 124 7 19 311 16 300 7.73e-93 278
Msa0865830 MtrunA17_Chr8g0368921 42.958 284 159 2 19 300 15 297 6.50e-76 235
Msa0865830 MtrunA17_Chr4g0018921 41.404 285 162 4 18 300 12 293 7.87e-73 227
Msa0865830 MtrunA17_Chr7g0239701 43.015 272 143 3 49 311 47 315 3.09e-71 223
Msa0865830 MtrunA17_Chr8g0368931 43.056 288 153 4 19 302 15 295 1.14e-70 221
Msa0865830 MtrunA17_Chr4g0009531 42.761 297 153 6 19 310 15 299 3.14e-66 210
Msa0865830 MtrunA17_Chr4g0009581 41.311 305 151 6 19 312 16 303 4.35e-63 202
Msa0865830 MtrunA17_Chr4g0036261 58.750 160 65 1 139 297 1 160 2.35e-60 191
Msa0865830 MtrunA17_Chr4g0036051 39.088 307 172 6 15 310 6 308 1.36e-59 193
Msa0865830 MtrunA17_Chr7g0243551 38.686 274 160 5 20 292 23 289 2.71e-58 189
Msa0865830 MtrunA17_Chr4g0036301 52.941 170 70 3 151 311 1 169 3.61e-51 167
Msa0865830 MtrunA17_Chr4g0036321 52.353 170 71 3 151 311 1 169 8.89e-50 163
Msa0865830 MtrunA17_Chr4g0009621 42.466 219 114 2 82 300 1 207 1.79e-43 149
Msa0865830 MtrunA17_Chr6g0479811 46.018 113 56 2 191 300 1 111 5.52e-26 99.8
Msa0865830 MtrunA17_Chr4g0036291 51.111 90 42 2 20 107 17 106 3.83e-24 94.7
Msa0865830 MtrunA17_Chr4g0036311 44.037 109 56 3 1 107 1 106 1.87e-23 92.8
Msa0865830 MtrunA17_Chr4g0036251 47.222 108 48 3 1 107 1 100 2.43e-23 92.4
Msa0865830 MtrunA17_Chr6g0479791 49.412 85 32 3 237 311 18 101 1.47e-16 73.9
Msa0865830 MtrunA17_Chr3g0095421 25.836 329 160 13 15 285 42 344 1.71e-16 79.3
Msa0865830 MtrunA17_Chr7g0274071 24.913 289 153 11 41 290 52 315 9.02e-13 68.2
Msa0865830 MtrunA17_Chr7g0222171 25.087 287 161 9 41 292 43 310 6.04e-12 65.5
Msa0865830 MtrunA17_Chr1g0204651 22.977 309 169 10 24 290 29 310 6.93e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0865830 AT1G59960.1 53.571 308 132 6 1 300 1 305 4.46e-113 330
Msa0865830 AT1G59950.1 55.903 288 117 5 20 300 15 299 5.17e-106 312
Msa0865830 AT2G37770.2 44.755 286 147 4 19 300 15 293 1.82e-78 242
Msa0865830 AT2G37790.1 43.007 286 152 4 19 300 15 293 2.15e-76 236
Msa0865830 AT5G62420.1 44.014 284 153 4 20 300 14 294 1.19e-74 232
Msa0865830 AT5G01670.1 42.254 284 155 6 19 300 23 299 9.17e-73 227
Msa0865830 AT2G37760.4 43.310 284 148 4 19 299 15 288 3.28e-72 225
Msa0865830 AT2G37760.3 43.310 284 148 4 19 299 15 288 3.28e-72 225
Msa0865830 AT2G37760.5 43.772 281 145 4 19 296 15 285 3.01e-71 223
Msa0865830 AT2G37760.2 43.110 283 148 4 19 298 15 287 2.32e-70 221
Msa0865830 AT2G37760.1 43.110 283 148 4 19 298 15 287 2.32e-70 221
Msa0865830 AT3G53880.1 41.696 283 160 3 19 300 15 293 1.10e-69 219
Msa0865830 AT2G21260.1 39.041 292 163 6 15 295 6 293 2.43e-67 213
Msa0865830 AT3G53880.2 41.786 280 152 4 19 294 15 287 2.94e-67 213
Msa0865830 AT5G01670.2 38.585 311 155 7 19 300 23 326 8.74e-67 213
Msa0865830 AT2G21250.1 37.785 307 176 6 15 310 6 308 5.62e-66 209
Msa0865830 AT2G37760.6 42.917 240 130 3 62 298 6 241 8.62e-58 187
Msa0865830 AT2G37760.7 42.917 240 130 3 62 298 6 241 8.62e-58 187
Msa0865830 AT2G37770.1 47.716 197 93 3 19 212 15 204 1.65e-54 179
Msa0865830 AT2G21250.2 41.905 210 111 5 15 217 6 211 3.49e-48 161
Msa0865830 AT2G21260.2 35.000 220 130 5 87 295 8 225 2.15e-41 144
Msa0865830 AT1G06690.1 26.990 289 155 9 35 285 85 355 2.40e-19 87.8
Msa0865830 AT5G53580.1 24.648 284 159 10 44 289 80 346 5.07e-15 75.1
Msa0865830 AT1G60680.1 27.532 316 162 16 15 285 14 307 3.54e-14 72.8
Msa0865830 AT1G60750.1 25.887 282 159 12 44 300 50 306 1.69e-11 64.7
Msa0865830 AT1G60690.1 24.921 317 175 13 25 300 27 321 5.78e-11 63.2

Find 72 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAAGATACGTAAATTT+TGG 0.162109 5_4:-67004377 None:intergenic
ATTGGAAATGAAAACTTTCC+AGG 0.288960 5_4:-67003836 None:intergenic
TGCTTGCACCTTTCCTCAAC+GGG 0.292412 5_4:-67004209 None:intergenic
ATAACTTGGAGAAAATAAAA+TGG 0.308072 5_4:-67004624 None:intergenic
TGGACTTGTACCTGATTCAT+TGG 0.308628 5_4:+67003798 Msa0865830:CDS
GTGTCTATAACCTTGTTTGA+TGG 0.333209 5_4:-67003357 None:intergenic
TCATTCTCCATAACTTCATT+TGG 0.362803 5_4:-67004237 None:intergenic
CATTTGATGTGAAAGGTGTT+TGG 0.370719 5_4:+67003879 Msa0865830:CDS
TCTTTCTTACATGTGAAGTC+AGG 0.371382 5_4:-67003311 None:intergenic
AAAATTTACGTATCTTTGAT+TGG 0.375055 5_4:+67004379 Msa0865830:CDS
CTTGGACTCACTAAAGCTAT+TGG 0.375778 5_4:+67003926 Msa0865830:CDS
CAAACACCTTTCACATCAAA+TGG 0.381803 5_4:-67003878 None:intergenic
AACTAAGTGGCCAATGAATC+AGG 0.385049 5_4:-67003808 None:intergenic
AGTCCGGGCTTGGTTGGTCC+AGG 0.391423 5_4:-67004459 None:intergenic
TTTGATACTGCTGCTGCATA+TGG 0.396016 5_4:+67003380 Msa0865830:CDS
AACACTACCCATGTTGTTGT+TGG 0.397673 5_4:-67003216 None:intergenic
TTGCACAAATTTCTCTAAGA+TGG 0.398611 5_4:+67004298 Msa0865830:CDS
ATCATAGAGGTCATTGAGTC+CGG 0.411816 5_4:-67004475 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.421446 5_4:-67003854 None:intergenic
TTGAAAGAGGCAATTGAACT+TGG 0.422526 5_4:+67003428 Msa0865830:CDS
ATTTGATGTGAAAGGTGTTT+GGG 0.426961 5_4:+67003880 Msa0865830:CDS
TCTCTCCTTATCATAGCTCT+TGG 0.432328 5_4:-67004349 None:intergenic
TGTTCCCAAGAGCTATGATA+AGG 0.434816 5_4:+67004344 Msa0865830:CDS
CTCTCCTTATCATAGCTCTT+GGG 0.442349 5_4:-67004348 None:intergenic
GAGGTCATTGAGTCCGGGCT+TGG 0.446240 5_4:-67004469 None:intergenic
CAGGGGACCAAATGAAGTTA+TGG 0.449659 5_4:+67004230 Msa0865830:CDS
AAGCAAAATCGTTTGATCCC+TGG 0.455139 5_4:+67004441 Msa0865830:CDS
CGTTGAGGAAAGGTGCAAGC+AGG 0.464952 5_4:+67004211 Msa0865830:CDS
AAAGTTTAGAAGTAACAAAA+AGG 0.467615 5_4:-67003469 None:intergenic
GACTCTTCAACTAGACTACT+TGG 0.469433 5_4:+67003778 Msa0865830:CDS
CTGCTTGCACCTTTCCTCAA+CGG 0.474588 5_4:-67004210 None:intergenic
ATCCCTGGACCAACCAAGCC+CGG 0.482612 5_4:+67004456 Msa0865830:CDS
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 5_4:-67003906 None:intergenic
TATGGCTCAGAACAAGCTCT+TGG 0.491850 5_4:+67003398 Msa0865830:CDS
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 5_4:+67003908 Msa0865830:CDS
TCTTGGAGAGGCTTTGAAAG+AGG 0.506147 5_4:+67003415 Msa0865830:CDS
CTTTCTTACATGTGAAGTCA+GGG 0.506502 5_4:-67003310 None:intergenic
GTGTTTGTAAGAACCTTTGT+TGG 0.534052 5_4:-67003245 None:intergenic
GAAGATGCCTGTGGTTGGAA+TGG 0.535658 5_4:+67003280 Msa0865830:CDS
GTCCGGGCTTGGTTGGTCCA+GGG 0.541777 5_4:-67004458 None:intergenic
TCATTGAGTCCGGGCTTGGT+TGG 0.547327 5_4:-67004465 None:intergenic
GTTGAGGAAAGGTGCAAGCA+GGG 0.550606 5_4:+67004212 Msa0865830:CDS
TCTATATTTAGTCATCATAG+AGG 0.553846 5_4:-67004488 None:intergenic
AAGATGCCTGTGGTTGGAAT+GGG 0.555328 5_4:+67003281 Msa0865830:CDS
TGGCCACTTAGTTCTCAGCC+TGG 0.559322 5_4:+67003818 Msa0865830:CDS
CTTTGATTGGTCATTGACAA+AGG 0.559604 5_4:+67004392 Msa0865830:CDS
TCATAGAGGTCATTGAGTCC+GGG 0.574712 5_4:-67004474 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.584406 5_4:+67004127 Msa0865830:intron
GCTGATCCCATTCCAACCAC+AGG 0.587516 5_4:-67003287 None:intergenic
ATCATTGAAGCCATCAAACA+AGG 0.587661 5_4:+67003347 Msa0865830:CDS
GAAAGGTGTTTGGGAATCCA+TGG 0.587744 5_4:+67003889 Msa0865830:CDS
CTAAGATGGCTATATGAACA+AGG 0.588672 5_4:+67004312 Msa0865830:CDS
TAGTGTTGAAATTCCAACAA+AGG 0.595790 5_4:+67003232 Msa0865830:CDS
TGAATTACTTGATTGACTGC+AGG 0.596137 5_4:-67004007 None:intergenic
TTCTCAATCCAACAACAACA+TGG 0.599916 5_4:+67003208 Msa0865830:exon
AAATTGATTATTTAAAACAA+CGG 0.602105 5_4:-67004600 None:intergenic
TTTCTTACATGTGAAGTCAG+GGG 0.620409 5_4:-67003309 None:intergenic
CAATTGAAGATGCCTGTGGT+TGG 0.621459 5_4:+67003275 Msa0865830:CDS
ATGTTGTTGTTGGATTGAGA+AGG 0.624157 5_4:-67003206 None:intergenic
AGAGCAGGAATAACAAGATG+AGG 0.624425 5_4:-67003509 None:intergenic
TTGAGGAAAGGTGCAAGCAG+GGG 0.624444 5_4:+67004213 Msa0865830:CDS
TTTCCTCAACGGGGAAAATG+CGG 0.632608 5_4:-67004199 None:intergenic
AAAGAGATTGCAGATGCACA+TGG 0.633321 5_4:+67004267 Msa0865830:CDS
CTCAGAACAAGCTCTTGGAG+AGG 0.635937 5_4:+67003403 Msa0865830:CDS
TTTCCAGGCTGAGAACTAAG+TGG 0.647166 5_4:-67003821 None:intergenic
CTCTTGCCATTTGATGTGAA+AGG 0.649522 5_4:+67003872 Msa0865830:CDS
TGATTGGTCATTGACAAAGG+AGG 0.655967 5_4:+67004395 Msa0865830:CDS
TCTCAATCCAACAACAACAT+GGG 0.679881 5_4:+67003209 Msa0865830:exon
ATTGACTGCAGGAAGAACAG+TGG 0.718468 5_4:-67003996 None:intergenic
AGGTGTTTGGGAATCCATGG+AGG 0.719619 5_4:+67003892 Msa0865830:CDS
GCTTGCACCTTTCCTCAACG+GGG 0.723595 5_4:-67004208 None:intergenic
TAGTCAATTGAAGATGCCTG+TGG 0.737799 5_4:+67003271 Msa0865830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGATTATTTAAAACAA+CGG - chr5_4:67004603-67004622 None:intergenic 10.0%
!!! AAATTGATTATTTAAAACAA+CGG - chr5_4:67004603-67004622 None:intergenic 10.0%
!! AAAGTTTAGAAGTAACAAAA+AGG - chr5_4:67003472-67003491 None:intergenic 20.0%
!!! TTTTTGTTACTTCTAAACTT+TGG + chr5_4:67003471-67003490 Msa0865830:CDS 20.0%
!!! TTTTGTTACTTCTAAACTTT+GGG + chr5_4:67003472-67003491 Msa0865830:CDS 20.0%
!!! GTTTAAGTTAATCAAAACTT+AGG - chr5_4:67004042-67004061 None:intergenic 20.0%
!! CAATGAACTCATATATTTAT+AGG + chr5_4:67004107-67004126 Msa0865830:intron 20.0%
!!! AATCAAAGATACGTAAATTT+TGG - chr5_4:67004380-67004399 None:intergenic 20.0%
!! AAAATTTACGTATCTTTGAT+TGG + chr5_4:67004379-67004398 Msa0865830:CDS 20.0%
!!! TAATTTTGAAGCAAACTTAA+AGG - chr5_4:67004531-67004550 None:intergenic 20.0%
!! ATAACTTGGAGAAAATAAAA+TGG - chr5_4:67004627-67004646 None:intergenic 20.0%
!! AAAGTTTAGAAGTAACAAAA+AGG - chr5_4:67003472-67003491 None:intergenic 20.0%
!!! TTTTTGTTACTTCTAAACTT+TGG + chr5_4:67003471-67003490 Msa0865830:CDS 20.0%
!!! TTTTGTTACTTCTAAACTTT+GGG + chr5_4:67003472-67003491 Msa0865830:CDS 20.0%
!!! GTTTAAGTTAATCAAAACTT+AGG - chr5_4:67004042-67004061 None:intergenic 20.0%
!! CAATGAACTCATATATTTAT+AGG + chr5_4:67004107-67004126 Msa0865830:intron 20.0%
!!! AATCAAAGATACGTAAATTT+TGG - chr5_4:67004380-67004399 None:intergenic 20.0%
!! AAAATTTACGTATCTTTGAT+TGG + chr5_4:67004379-67004398 Msa0865830:CDS 20.0%
!!! TAATTTTGAAGCAAACTTAA+AGG - chr5_4:67004531-67004550 None:intergenic 20.0%
!! ATAACTTGGAGAAAATAAAA+TGG - chr5_4:67004627-67004646 None:intergenic 20.0%
! GAGTATATTTAGATGACATT+TGG + chr5_4:67003577-67003596 Msa0865830:intron 25.0%
!!! GATTCATTTTTGTTCTTCAA+TGG - chr5_4:67003710-67003729 None:intergenic 25.0%
! TGAACTCATATATTTATAGG+TGG + chr5_4:67004110-67004129 Msa0865830:intron 25.0%
! TCTATATTTAGTCATCATAG+AGG - chr5_4:67004491-67004510 None:intergenic 25.0%
! GAGTATATTTAGATGACATT+TGG + chr5_4:67003577-67003596 Msa0865830:intron 25.0%
!!! GATTCATTTTTGTTCTTCAA+TGG - chr5_4:67003710-67003729 None:intergenic 25.0%
! TGAACTCATATATTTATAGG+TGG + chr5_4:67004110-67004129 Msa0865830:intron 25.0%
! TCTATATTTAGTCATCATAG+AGG - chr5_4:67004491-67004510 None:intergenic 25.0%
! TAGTGTTGAAATTCCAACAA+AGG + chr5_4:67003232-67003251 Msa0865830:CDS 30.0%
ATTGGAAATGAAAACTTTCC+AGG - chr5_4:67003839-67003858 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG + chr5_4:67003844-67003863 Msa0865830:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr5_4:67003880-67003899 Msa0865830:CDS 30.0%
TCATTCTCCATAACTTCATT+TGG - chr5_4:67004240-67004259 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr5_4:67004298-67004317 Msa0865830:CDS 30.0%
! TAGTGTTGAAATTCCAACAA+AGG + chr5_4:67003232-67003251 Msa0865830:CDS 30.0%
ATTGGAAATGAAAACTTTCC+AGG - chr5_4:67003839-67003858 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG + chr5_4:67003844-67003863 Msa0865830:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr5_4:67003880-67003899 Msa0865830:CDS 30.0%
TCATTCTCCATAACTTCATT+TGG - chr5_4:67004240-67004259 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr5_4:67004298-67004317 Msa0865830:CDS 30.0%
! ATGTTGTTGTTGGATTGAGA+AGG - chr5_4:67003209-67003228 None:intergenic 35.0%
TTCTCAATCCAACAACAACA+TGG + chr5_4:67003208-67003227 Msa0865830:exon 35.0%
TCTCAATCCAACAACAACAT+GGG + chr5_4:67003209-67003228 Msa0865830:exon 35.0%
GTGTTTGTAAGAACCTTTGT+TGG - chr5_4:67003248-67003267 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - chr5_4:67003312-67003331 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - chr5_4:67003313-67003332 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr5_4:67003314-67003333 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr5_4:67003347-67003366 Msa0865830:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr5_4:67003360-67003379 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + chr5_4:67003428-67003447 Msa0865830:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG - chr5_4:67003527-67003546 None:intergenic 35.0%
!! ATGATTTGTTGATTTCGTGC+AGG + chr5_4:67003756-67003775 Msa0865830:intron 35.0%
CAAACACCTTTCACATCAAA+TGG - chr5_4:67003881-67003900 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr5_4:67003879-67003898 Msa0865830:CDS 35.0%
TGAATTACTTGATTGACTGC+AGG - chr5_4:67004010-67004029 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr5_4:67004312-67004331 Msa0865830:CDS 35.0%
! CTTTGATTGGTCATTGACAA+AGG + chr5_4:67004392-67004411 Msa0865830:CDS 35.0%
!!! ATACTTGTTGCTTTTGAGCT+TGG + chr5_4:67004572-67004591 Msa0865830:three_prime_UTR 35.0%
! ATGTTGTTGTTGGATTGAGA+AGG - chr5_4:67003209-67003228 None:intergenic 35.0%
TTCTCAATCCAACAACAACA+TGG + chr5_4:67003208-67003227 Msa0865830:exon 35.0%
TCTCAATCCAACAACAACAT+GGG + chr5_4:67003209-67003228 Msa0865830:exon 35.0%
GTGTTTGTAAGAACCTTTGT+TGG - chr5_4:67003248-67003267 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - chr5_4:67003312-67003331 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - chr5_4:67003313-67003332 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr5_4:67003314-67003333 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr5_4:67003347-67003366 Msa0865830:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr5_4:67003360-67003379 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + chr5_4:67003428-67003447 Msa0865830:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG - chr5_4:67003527-67003546 None:intergenic 35.0%
!! ATGATTTGTTGATTTCGTGC+AGG + chr5_4:67003756-67003775 Msa0865830:intron 35.0%
CAAACACCTTTCACATCAAA+TGG - chr5_4:67003881-67003900 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr5_4:67003879-67003898 Msa0865830:CDS 35.0%
TGAATTACTTGATTGACTGC+AGG - chr5_4:67004010-67004029 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr5_4:67004312-67004331 Msa0865830:CDS 35.0%
! CTTTGATTGGTCATTGACAA+AGG + chr5_4:67004392-67004411 Msa0865830:CDS 35.0%
!!! ATACTTGTTGCTTTTGAGCT+TGG + chr5_4:67004572-67004591 Msa0865830:three_prime_UTR 35.0%
AACACTACCCATGTTGTTGT+TGG - chr5_4:67003219-67003238 None:intergenic 40.0%
TAGTCAATTGAAGATGCCTG+TGG + chr5_4:67003271-67003290 Msa0865830:CDS 40.0%
TTTGATACTGCTGCTGCATA+TGG + chr5_4:67003380-67003399 Msa0865830:CDS 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr5_4:67003512-67003531 None:intergenic 40.0%
GACTCTTCAACTAGACTACT+TGG + chr5_4:67003778-67003797 Msa0865830:CDS 40.0%
TGGACTTGTACCTGATTCAT+TGG + chr5_4:67003798-67003817 Msa0865830:CDS 40.0%
AACTAAGTGGCCAATGAATC+AGG - chr5_4:67003811-67003830 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr5_4:67003857-67003876 None:intergenic 40.0%
! CTCTTGCCATTTGATGTGAA+AGG + chr5_4:67003872-67003891 Msa0865830:CDS 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr5_4:67003909-67003928 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr5_4:67003908-67003927 Msa0865830:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr5_4:67003926-67003945 Msa0865830:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr5_4:67004267-67004286 Msa0865830:CDS 40.0%
TGTTCCCAAGAGCTATGATA+AGG + chr5_4:67004344-67004363 Msa0865830:CDS 40.0%
CTCTCCTTATCATAGCTCTT+GGG - chr5_4:67004351-67004370 None:intergenic 40.0%
TCTCTCCTTATCATAGCTCT+TGG - chr5_4:67004352-67004371 None:intergenic 40.0%
! TGATTGGTCATTGACAAAGG+AGG + chr5_4:67004395-67004414 Msa0865830:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG + chr5_4:67004441-67004460 Msa0865830:CDS 40.0%
ATCATAGAGGTCATTGAGTC+CGG - chr5_4:67004478-67004497 None:intergenic 40.0%
AACACTACCCATGTTGTTGT+TGG - chr5_4:67003219-67003238 None:intergenic 40.0%
TAGTCAATTGAAGATGCCTG+TGG + chr5_4:67003271-67003290 Msa0865830:CDS 40.0%
TTTGATACTGCTGCTGCATA+TGG + chr5_4:67003380-67003399 Msa0865830:CDS 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr5_4:67003512-67003531 None:intergenic 40.0%
GACTCTTCAACTAGACTACT+TGG + chr5_4:67003778-67003797 Msa0865830:CDS 40.0%
TGGACTTGTACCTGATTCAT+TGG + chr5_4:67003798-67003817 Msa0865830:CDS 40.0%
AACTAAGTGGCCAATGAATC+AGG - chr5_4:67003811-67003830 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr5_4:67003857-67003876 None:intergenic 40.0%
! CTCTTGCCATTTGATGTGAA+AGG + chr5_4:67003872-67003891 Msa0865830:CDS 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr5_4:67003909-67003928 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr5_4:67003908-67003927 Msa0865830:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr5_4:67003926-67003945 Msa0865830:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr5_4:67004267-67004286 Msa0865830:CDS 40.0%
TGTTCCCAAGAGCTATGATA+AGG + chr5_4:67004344-67004363 Msa0865830:CDS 40.0%
CTCTCCTTATCATAGCTCTT+GGG - chr5_4:67004351-67004370 None:intergenic 40.0%
TCTCTCCTTATCATAGCTCT+TGG - chr5_4:67004352-67004371 None:intergenic 40.0%
! TGATTGGTCATTGACAAAGG+AGG + chr5_4:67004395-67004414 Msa0865830:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG + chr5_4:67004441-67004460 Msa0865830:CDS 40.0%
ATCATAGAGGTCATTGAGTC+CGG - chr5_4:67004478-67004497 None:intergenic 40.0%
CAATTGAAGATGCCTGTGGT+TGG + chr5_4:67003275-67003294 Msa0865830:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr5_4:67003281-67003300 Msa0865830:CDS 45.0%
TATGGCTCAGAACAAGCTCT+TGG + chr5_4:67003398-67003417 Msa0865830:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + chr5_4:67003415-67003434 Msa0865830:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG - chr5_4:67003824-67003843 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr5_4:67003889-67003908 Msa0865830:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG - chr5_4:67003999-67004018 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG - chr5_4:67004143-67004162 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG + chr5_4:67004165-67004184 Msa0865830:CDS 45.0%
TTTCCTCAACGGGGAAAATG+CGG - chr5_4:67004202-67004221 None:intergenic 45.0%
CAGGGGACCAAATGAAGTTA+TGG + chr5_4:67004230-67004249 Msa0865830:CDS 45.0%
TCATAGAGGTCATTGAGTCC+GGG - chr5_4:67004477-67004496 None:intergenic 45.0%
CAATTGAAGATGCCTGTGGT+TGG + chr5_4:67003275-67003294 Msa0865830:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr5_4:67003281-67003300 Msa0865830:CDS 45.0%
TATGGCTCAGAACAAGCTCT+TGG + chr5_4:67003398-67003417 Msa0865830:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + chr5_4:67003415-67003434 Msa0865830:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG - chr5_4:67003824-67003843 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr5_4:67003889-67003908 Msa0865830:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG - chr5_4:67003999-67004018 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG - chr5_4:67004143-67004162 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG + chr5_4:67004165-67004184 Msa0865830:CDS 45.0%
TTTCCTCAACGGGGAAAATG+CGG - chr5_4:67004202-67004221 None:intergenic 45.0%
CAGGGGACCAAATGAAGTTA+TGG + chr5_4:67004230-67004249 Msa0865830:CDS 45.0%
TCATAGAGGTCATTGAGTCC+GGG - chr5_4:67004477-67004496 None:intergenic 45.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr5_4:67003280-67003299 Msa0865830:CDS 50.0%
CTCAGAACAAGCTCTTGGAG+AGG + chr5_4:67003403-67003422 Msa0865830:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr5_4:67003892-67003911 Msa0865830:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr5_4:67004127-67004146 Msa0865830:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG + chr5_4:67004196-67004215 Msa0865830:CDS 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG + chr5_4:67004201-67004220 Msa0865830:CDS 50.0%
TGCTTGCACCTTTCCTCAAC+GGG - chr5_4:67004212-67004231 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr5_4:67004213-67004232 None:intergenic 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG + chr5_4:67004212-67004231 Msa0865830:CDS 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG + chr5_4:67004213-67004232 Msa0865830:CDS 50.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr5_4:67003280-67003299 Msa0865830:CDS 50.0%
CTCAGAACAAGCTCTTGGAG+AGG + chr5_4:67003403-67003422 Msa0865830:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr5_4:67003892-67003911 Msa0865830:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr5_4:67004127-67004146 Msa0865830:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG + chr5_4:67004196-67004215 Msa0865830:CDS 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG + chr5_4:67004201-67004220 Msa0865830:CDS 50.0%
TGCTTGCACCTTTCCTCAAC+GGG - chr5_4:67004212-67004231 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr5_4:67004213-67004232 None:intergenic 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG + chr5_4:67004212-67004231 Msa0865830:CDS 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG + chr5_4:67004213-67004232 Msa0865830:CDS 50.0%
GCTGATCCCATTCCAACCAC+AGG - chr5_4:67003290-67003309 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG + chr5_4:67003818-67003837 Msa0865830:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG - chr5_4:67004211-67004230 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG + chr5_4:67004211-67004230 Msa0865830:CDS 55.0%
! TCATTGAGTCCGGGCTTGGT+TGG - chr5_4:67004468-67004487 None:intergenic 55.0%
GCTGATCCCATTCCAACCAC+AGG - chr5_4:67003290-67003309 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG + chr5_4:67003818-67003837 Msa0865830:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG - chr5_4:67004211-67004230 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG + chr5_4:67004211-67004230 Msa0865830:CDS 55.0%
! TCATTGAGTCCGGGCTTGGT+TGG - chr5_4:67004468-67004487 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+CGG + chr5_4:67004456-67004475 Msa0865830:CDS 60.0%
GAGGTCATTGAGTCCGGGCT+TGG - chr5_4:67004472-67004491 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+CGG + chr5_4:67004456-67004475 Msa0865830:CDS 60.0%
GAGGTCATTGAGTCCGGGCT+TGG - chr5_4:67004472-67004491 None:intergenic 60.0%
! GTCCGGGCTTGGTTGGTCCA+GGG - chr5_4:67004461-67004480 None:intergenic 65.0%
! AGTCCGGGCTTGGTTGGTCC+AGG - chr5_4:67004462-67004481 None:intergenic 65.0%
! GTCCGGGCTTGGTTGGTCCA+GGG - chr5_4:67004461-67004480 None:intergenic 65.0%
! AGTCCGGGCTTGGTTGGTCC+AGG - chr5_4:67004462-67004481 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 67003170 67004658 67003170 ID=Msa0865830;Name=Msa0865830
chr5_4 mRNA 67003170 67004658 67003170 ID=Msa0865830-mRNA-1;Parent=Msa0865830;Name=Msa0865830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=57|1|1|1|1|1|3|155|312
chr5_4 exon 67003170 67003546 67003170 ID=Msa0865830-mRNA-1:exon:21106;Parent=Msa0865830-mRNA-1
chr5_4 exon 67003778 67004021 67003778 ID=Msa0865830-mRNA-1:exon:21107;Parent=Msa0865830-mRNA-1
chr5_4 exon 67004129 67004658 67004129 ID=Msa0865830-mRNA-1:exon:21108;Parent=Msa0865830-mRNA-1
chr5_4 five_prime_UTR 67003170 67003226 67003170 ID=Msa0865830-mRNA-1:five_prime_utr;Parent=Msa0865830-mRNA-1
chr5_4 CDS 67003227 67003546 67003227 ID=Msa0865830-mRNA-1:cds;Parent=Msa0865830-mRNA-1
chr5_4 CDS 67003778 67004021 67003778 ID=Msa0865830-mRNA-1:cds;Parent=Msa0865830-mRNA-1
chr5_4 CDS 67004129 67004503 67004129 ID=Msa0865830-mRNA-1:cds;Parent=Msa0865830-mRNA-1
chr5_4 three_prime_UTR 67004504 67004658 67004504 ID=Msa0865830-mRNA-1:three_prime_utr;Parent=Msa0865830-mRNA-1
Gene Sequence

>Msa0865830

ATGGGTAGTGTTGAAATTCCAACAAAGGTTCTTACAAACACATCTAGTCAATTGAAGATGCCTGTGGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACTGCTGCTGCATATGGCTCAGAACAAGCTCTTGGAGAGGCTTTGAAAGAGGCAATTGAACTTGGTCTTGTCACTAGAGATGACCTTTTTGTTACTTCTAAACTTTGGGTTACTGAAAATCATCCTCATCTTGTTATTCCTGCTCTTCAAAAATCTCTCAAGACTCTTCAACTAGACTACTTGGACTTGTACCTGATTCATTGGCCACTTAGTTCTCAGCCTGGAAAGTTTTCATTTCCAATTGATGTGGCAGATCTCTTGCCATTTGATGTGAAAGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTCGCCACTGTTCTTCCTGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAAGCTTAGAGAGTTTTGCAACGCACACGGAATAGTGTTAACCGCATTTTCCCCGTTGAGGAAAGGTGCAAGCAGGGGACCAAATGAAGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCACATGGAAAGTCTGTTGCACAAATTTCTCTAAGATGGCTATATGAACAAGGAGTCACTTTTGTTCCCAAGAGCTATGATAAGGAGAGAATGAACCAAAATTTACGTATCTTTGATTGGTCATTGACAAAGGAGGATCATGAGAAAATTGCTCAAATTAAGCAAAATCGTTTGATCCCTGGACCAACCAAGCCCGGACTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa0865830

MGSVEIPTKVLTNTSSQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTRDDLFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFSFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMNQNLRIFDWSLTKEDHEKIAQIKQNRLIPGPTKPGLNDLYDD*