Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0982110 | XP_003593237.1 | 97.217 | 539 | 15 | 0 | 2 | 540 | 3 | 541 | 0.0 | 1084 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0982110 | sp|P47924|RIBA1_ARATH | 75.000 | 504 | 112 | 4 | 20 | 521 | 38 | 529 | 0.0 | 770 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0982110 | G7IPL5 | 97.217 | 539 | 15 | 0 | 2 | 540 | 3 | 541 | 0.0 | 1084 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0638820 | Msa0982110 | 0.813877 | 2.048653e-51 | -8.615850e-47 |
Msa0697520 | Msa0982110 | 0.807987 | 3.863371e-50 | -8.615850e-47 |
Msa0826360 | Msa0982110 | 0.808827 | 2.557292e-50 | -8.615850e-47 |
Msa0189890 | Msa0982110 | 0.853302 | 2.613803e-61 | -8.615850e-47 |
Msa0374040 | Msa0982110 | 0.803964 | 2.710753e-49 | -8.615850e-47 |
Msa0389710 | Msa0982110 | 0.800767 | 1.234702e-48 | -8.615850e-47 |
Msa0416040 | Msa0982110 | 0.810083 | 1.375070e-50 | -8.615850e-47 |
Msa0481740 | Msa0982110 | 0.817036 | 4.060535e-52 | -8.615850e-47 |
Msa0481770 | Msa0982110 | 0.829185 | 5.929853e-55 | -8.615850e-47 |
Msa0982110 | Msa1031780 | 0.815776 | 7.774822e-52 | -8.615850e-47 |
Msa0982110 | Msa1041250 | 0.810723 | 1.000070e-50 | -8.615850e-47 |
Msa0982110 | Msa1080650 | 0.822016 | 2.967710e-53 | -8.615850e-47 |
Msa0982110 | Msa1126440 | 0.820893 | 5.392748e-53 | -8.615850e-47 |
Msa0982110 | Msa1126870 | 0.813481 | 2.504812e-51 | -8.615850e-47 |
Msa0982110 | Msa1126940 | 0.829292 | 5.585592e-55 | -8.615850e-47 |
Msa0982110 | Msa1129600 | 0.801751 | 7.765459e-49 | -8.615850e-47 |
Msa0982110 | Msa1165670 | 0.803880 | 2.821902e-49 | -8.615850e-47 |
Msa0982110 | Msa1165980 | 0.835151 | 1.982816e-56 | -8.615850e-47 |
Msa0982110 | Msa1215000 | 0.806586 | 7.653507e-50 | -8.615850e-47 |
Msa0982110 | Msa1331950 | 0.824730 | 6.888887e-54 | -8.615850e-47 |
Msa0982110 | Msa1366480 | 0.810916 | 9.083737e-51 | -8.615850e-47 |
Msa0982110 | Msa1432180 | 0.825497 | 4.538578e-54 | -8.615850e-47 |
Msa0982110 | Msa1453600 | 0.824264 | 8.867981e-54 | -8.615850e-47 |
Msa0982110 | Msa1459930 | 0.800615 | 1.326095e-48 | -8.615850e-47 |
Msa0315120 | Msa0982110 | 0.871816 | 5.121499e-67 | -8.615850e-47 |
Msa0489070 | Msa0982110 | 0.815399 | 9.428866e-52 | -8.615850e-47 |
Msa0581150 | Msa0982110 | 0.837130 | 6.234040e-57 | -8.615850e-47 |
Msa0865830 | Msa0982110 | 0.800420 | 1.453318e-48 | -8.615850e-47 |
Msa0881510 | Msa0982110 | 0.911517 | 5.561548e-83 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0982110 | MtrunA17_Chr2g0279401 | 97.217 | 539 | 15 | 0 | 2 | 540 | 3 | 541 | 0.0 | 1084 |
Msa0982110 | MtrunA17_Chr4g0050151 | 73.827 | 554 | 107 | 6 | 2 | 539 | 3 | 534 | 0.0 | 798 |
Msa0982110 | MtrunA17_Chr2g0327771 | 66.910 | 411 | 135 | 1 | 112 | 521 | 97 | 507 | 0.0 | 575 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0982110 | AT5G64300.1 | 75.000 | 504 | 112 | 4 | 20 | 521 | 38 | 529 | 0.0 | 770 |
Msa0982110 | AT2G22450.1 | 71.220 | 410 | 107 | 4 | 89 | 496 | 74 | 474 | 0.0 | 597 |
Msa0982110 | AT5G59750.1 | 58.434 | 498 | 198 | 5 | 23 | 517 | 8 | 499 | 0.0 | 581 |
Msa0982110 | AT5G59750.2 | 54.699 | 532 | 198 | 6 | 23 | 517 | 8 | 533 | 0.0 | 563 |
Msa0982110 | AT5G59750.3 | 57.045 | 440 | 180 | 5 | 23 | 459 | 8 | 441 | 1.60e-170 | 490 |
Find 166 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCTATGGTTTGACTGTTTC+TGG | 0.114584 | 6_4:+21754625 | Msa0982110:CDS |
CATTGTATTACCTTGCTTAT+TGG | 0.184117 | 6_4:+21755070 | Msa0982110:three_prime_UTR |
AGTTAATTTGGTCAAATTAA+AGG | 0.199367 | 6_4:-21750722 | None:intergenic |
TGCCGAATCTATTCTAATTA+AGG | 0.215332 | 6_4:+21751451 | Msa0982110:CDS |
TGAACTAGAAGAAGTTAATT+TGG | 0.226517 | 6_4:-21750734 | None:intergenic |
AGAGACCAAACGTGTGAAAA+TGG | 0.231254 | 6_4:+21754696 | Msa0982110:CDS |
TGTCTAACTGGAGACATATT+TGG | 0.294019 | 6_4:+21753915 | Msa0982110:CDS |
ATTGAATAATTTGAAGTGAT+TGG | 0.310596 | 6_4:-21751276 | None:intergenic |
GAGGGAAAGTGGGGAGGTGC+AGG | 0.311831 | 6_4:-21750556 | None:intergenic |
CTTGATAATGGCAGCAGAAT+TGG | 0.313759 | 6_4:+21751773 | Msa0982110:CDS |
GTGAAAATGGGCCACGTCTA+TGG | 0.322087 | 6_4:+21754709 | Msa0982110:CDS |
TATAATTCACTTTGACAATA+GGG | 0.337928 | 6_4:-21751304 | None:intergenic |
TTATAATTCACTTTGACAAT+AGG | 0.340396 | 6_4:-21751305 | None:intergenic |
GCTCCGTGCTTATAACTTAC+AGG | 0.341829 | 6_4:+21754061 | Msa0982110:CDS |
GCTGATCTTACCATACTTGC+TGG | 0.343338 | 6_4:+21752565 | Msa0982110:CDS |
CAGGGGTGTCAGCTCAAGAT+AGG | 0.349843 | 6_4:+21752413 | Msa0982110:CDS |
TCTTACCATACTTGCTGGTT+TGG | 0.362027 | 6_4:+21752570 | Msa0982110:CDS |
TGGCTCCAAACCAGCAAGTA+TGG | 0.366834 | 6_4:-21752575 | None:intergenic |
TGAAGAAGATCTGGATAGAT+TGG | 0.371141 | 6_4:+21751860 | Msa0982110:CDS |
TACTATAAAAGCCATAGCTT+CGG | 0.376535 | 6_4:-21751802 | None:intergenic |
CCTGTTGACTCTAGGGAATA+TGG | 0.376635 | 6_4:+21754128 | Msa0982110:CDS |
TAGATTGGAGCTTCCTTTGA+TGG | 0.382995 | 6_4:+21751875 | Msa0982110:CDS |
TTCTTTGGTGTCTGTTACAG+AGG | 0.383488 | 6_4:+21755045 | Msa0982110:three_prime_UTR |
GTATGATATATGTAGGTAAT+AGG | 0.383546 | 6_4:-21754818 | None:intergenic |
CTAATTAAGGAACAGTCTAA+TGG | 0.392390 | 6_4:+21751464 | Msa0982110:CDS |
TTCCTTAATTAGAATAGATT+CGG | 0.393536 | 6_4:-21751453 | None:intergenic |
TCCTTTGATGGTGGACAGTA+AGG | 0.396490 | 6_4:+21751887 | Msa0982110:CDS |
GAAGAATCAAATGTTGTTGC+TGG | 0.405283 | 6_4:+21754772 | Msa0982110:CDS |
CAGTCAAACCATAGCCTTTG+AGG | 0.405833 | 6_4:-21754618 | None:intergenic |
TTTACCAATGATAATCTCAT+TGG | 0.405993 | 6_4:-21751414 | None:intergenic |
GGACTACAATGACTATGATT+TGG | 0.413404 | 6_4:+21751532 | Msa0982110:CDS |
ATTTGATTCTTCAACAGTAT+TGG | 0.413785 | 6_4:-21754761 | None:intergenic |
TTTCAGATACTGAGGGATCT+AGG | 0.416479 | 6_4:+21754547 | Msa0982110:intron |
CTCTAAGTATCTCTTGTTCT+CGG | 0.416752 | 6_4:-21754677 | None:intergenic |
GTACACTCAGAGTGTCTAAC+TGG | 0.418207 | 6_4:+21753903 | Msa0982110:CDS |
CGAATGTCTTCGATGGCCTC+AGG | 0.419623 | 6_4:-21751584 | None:intergenic |
TGAGCATATTGCAATGGTTA+AGG | 0.423972 | 6_4:+21753739 | Msa0982110:CDS |
GTTAAATCTGCATTGACATC+TGG | 0.433737 | 6_4:+21751359 | Msa0982110:CDS |
GTGCCTTCTTGAAGAAAATC+AGG | 0.434371 | 6_4:-21754937 | None:intergenic |
ACAAAATATGTTGGCCTCAA+AGG | 0.435305 | 6_4:+21754604 | Msa0982110:CDS |
TTTATAGTAAAGCATGGAAC+TGG | 0.441142 | 6_4:+21751816 | Msa0982110:CDS |
CGAAAACCTGAAAATTGTAT+TGG | 0.441857 | 6_4:-21755019 | None:intergenic |
CTGATTTCCACAGTCACATC+TGG | 0.442660 | 6_4:-21753943 | None:intergenic |
TGGGATTGCCTGTTGACTCT+AGG | 0.445337 | 6_4:+21754120 | Msa0982110:CDS |
AAGTATGAATGAAGAAGATC+TGG | 0.451224 | 6_4:+21751851 | Msa0982110:CDS |
AACACCAATGAGATTATCAT+TGG | 0.453021 | 6_4:+21751410 | Msa0982110:CDS |
ACTATAAAAGCCATAGCTTC+GGG | 0.455105 | 6_4:-21751801 | None:intergenic |
CCTGAAAATTGTATTGGTAA+TGG | 0.458617 | 6_4:-21755013 | None:intergenic |
AAGAAAGAGAGATCAATTAG+TGG | 0.461335 | 6_4:+21753637 | Msa0982110:CDS |
TTGGCAAATTCGCGGAGCTT+AGG | 0.465644 | 6_4:-21752649 | None:intergenic |
AAACGAAGGAGACTTGATAA+TGG | 0.466614 | 6_4:+21751761 | Msa0982110:CDS |
CAACTCCTCATTGGCTTCTA+CGG | 0.466646 | 6_4:-21754099 | None:intergenic |
TATCTATCGCTGACTTGATA+AGG | 0.467918 | 6_4:+21752692 | Msa0982110:CDS |
CAAAACTATTCATATTCAAA+TGG | 0.469637 | 6_4:+21750759 | Msa0982110:exon |
GGGATTGCCTGTTGACTCTA+GGG | 0.469934 | 6_4:+21754121 | Msa0982110:CDS |
AGGCAATCCCAACTCCTCAT+TGG | 0.470707 | 6_4:-21754108 | None:intergenic |
ATGGCCTTATCTATAATGAT+TGG | 0.471805 | 6_4:-21754994 | None:intergenic |
CCATATTCCCTAGAGTCAAC+AGG | 0.477453 | 6_4:-21754128 | None:intergenic |
GAAGGAAGAGGTATTGGATT+GGG | 0.477603 | 6_4:+21754032 | Msa0982110:CDS |
CGTAGAAGCCAATGAGGAGT+TGG | 0.481823 | 6_4:+21754100 | Msa0982110:CDS |
GGAACACCGGCATCAGACTC+AGG | 0.482276 | 6_4:+21751485 | Msa0982110:CDS |
GAGACCAAACGTGTGAAAAT+GGG | 0.484788 | 6_4:+21754697 | Msa0982110:CDS |
ATTGGTAAAGATCTCGTTGT+TGG | 0.488140 | 6_4:+21751428 | Msa0982110:CDS |
ATTAATCATGCAGATGGTAG+TGG | 0.489759 | 6_4:+21751716 | Msa0982110:intron |
ATGGTTTGACTGTTTCTGGT+AGG | 0.495319 | 6_4:+21754629 | Msa0982110:CDS |
CAGATTGAGGCTGCCGGTAG+GGG | 0.496302 | 6_4:+21753984 | Msa0982110:CDS |
TATGTTGGCCTCAAAGGCTA+TGG | 0.502238 | 6_4:+21754610 | Msa0982110:CDS |
GGACATGAAGGAAGAGGTAT+TGG | 0.502608 | 6_4:+21754026 | Msa0982110:CDS |
GCTAAACATGGTACCACCAC+AGG | 0.505229 | 6_4:+21752394 | Msa0982110:CDS |
AGTGCCAATCATTATAGATA+AGG | 0.507591 | 6_4:+21754990 | Msa0982110:three_prime_UTR |
ACAGATTGAGGCTGCCGGTA+GGG | 0.509746 | 6_4:+21753983 | Msa0982110:CDS |
TCCTTGACGAATGTCTTCGA+TGG | 0.509883 | 6_4:-21751591 | None:intergenic |
ATTGGCAACGCCCGAAGCTA+TGG | 0.511506 | 6_4:+21751791 | Msa0982110:CDS |
GTTATAAGTCTCTGTTAGAC+GGG | 0.512110 | 6_4:+21753714 | Msa0982110:CDS |
ACGTGATAAGAGTTAACAAC+GGG | 0.514164 | 6_4:-21754654 | None:intergenic |
AAAGCAGCATTGTGAGTTGA+GGG | 0.515216 | 6_4:-21751332 | None:intergenic |
GCTTATAACTTACAGGATGA+TGG | 0.518705 | 6_4:+21754068 | Msa0982110:CDS |
AATAATTTGAAGTGATTGGA+TGG | 0.519843 | 6_4:-21751272 | None:intergenic |
CTCTATGAAAGAGGGAAAGT+GGG | 0.520646 | 6_4:-21750566 | None:intergenic |
TAAAGTCGTCTCTATGAAAG+AGG | 0.521422 | 6_4:-21750575 | None:intergenic |
TATATCATACACAACAAAAG+AGG | 0.522768 | 6_4:+21754831 | Msa0982110:three_prime_UTR |
GTAATTTGACAGGGTGACAT+TGG | 0.522822 | 6_4:+21753855 | Msa0982110:intron |
TCTCTATGAAAGAGGGAAAG+TGG | 0.528459 | 6_4:-21750567 | None:intergenic |
AACAATCCAACAAAATATGT+TGG | 0.531217 | 6_4:+21754595 | Msa0982110:CDS |
GCCTTACTGTCCACCATCAA+AGG | 0.531971 | 6_4:-21751888 | None:intergenic |
ACTTGCAATGGAACAGATTG+AGG | 0.536805 | 6_4:+21753971 | Msa0982110:CDS |
GGTGGTGTCTTGAAGAGAGC+TGG | 0.536885 | 6_4:+21752526 | Msa0982110:CDS |
TGAAGGAAGAGGTATTGGAT+TGG | 0.539165 | 6_4:+21754031 | Msa0982110:CDS |
GTAGAAGCCAATGAGGAGTT+GGG | 0.539865 | 6_4:+21754101 | Msa0982110:CDS |
GGTATCCCTGAGTCTGATGC+CGG | 0.539984 | 6_4:-21751491 | None:intergenic |
AGATAGGGCAACTACAGTAT+TGG | 0.540764 | 6_4:+21752429 | Msa0982110:CDS |
AAATCAGCTTGCACTTGCAA+TGG | 0.545459 | 6_4:+21753959 | Msa0982110:CDS |
TTGTTGTGTATGATATATGT+AGG | 0.545690 | 6_4:-21754825 | None:intergenic |
GGAATATGGCATAGGCGCAC+AGG | 0.546667 | 6_4:+21754142 | Msa0982110:CDS |
TTATTGGAATATAATCTACC+AGG | 0.552249 | 6_4:+21755086 | Msa0982110:three_prime_UTR |
AGTTATAAGCACGGAGCTTG+TGG | 0.552273 | 6_4:-21754055 | None:intergenic |
TGACAGGGTGACATTGGAGA+TGG | 0.555270 | 6_4:+21753861 | Msa0982110:intron |
ATCTCACACAGAACTGCCAC+TGG | 0.558496 | 6_4:-21752595 | None:intergenic |
ACTTGCTGGTTTGGAGCCAG+TGG | 0.560907 | 6_4:+21752579 | Msa0982110:CDS |
TGTTATAAGTCTCTGTTAGA+CGG | 0.563415 | 6_4:+21753713 | Msa0982110:CDS |
TGTAGATGATGACGGTTCCA+TGG | 0.564406 | 6_4:+21752618 | Msa0982110:CDS |
AAATCTGCATTGACATCTGG+AGG | 0.565898 | 6_4:+21751362 | Msa0982110:CDS |
AGGGGTGTCAGCTCAAGATA+GGG | 0.566474 | 6_4:+21752414 | Msa0982110:CDS |
GCAAGAATACCTACAATGTG+GGG | 0.568021 | 6_4:+21753674 | Msa0982110:CDS |
TTATAACAGTATGATGTGAA+TGG | 0.568571 | 6_4:-21753698 | None:intergenic |
TTTAGTGGGAAAATATGGCC+TGG | 0.569452 | 6_4:-21752493 | None:intergenic |
TGCAAGAATACCTACAATGT+GGG | 0.572772 | 6_4:+21753673 | Msa0982110:CDS |
ATTGGAGCTTCCTTTGATGG+TGG | 0.572830 | 6_4:+21751878 | Msa0982110:CDS |
CCGTCTGATTTCAACCGACC+AGG | 0.574350 | 6_4:+21752475 | Msa0982110:CDS |
ATATACAAGTACTCCCCTAC+CGG | 0.574412 | 6_4:-21753997 | None:intergenic |
GATTTGGACATCCCTGCAGA+AGG | 0.574646 | 6_4:+21751548 | Msa0982110:CDS |
TCTCACGCTTGGCAAATTCG+CGG | 0.575937 | 6_4:-21752657 | None:intergenic |
TGGAGAAGATGTTCTTGTGA+GGG | 0.578569 | 6_4:+21753881 | Msa0982110:CDS |
CGGGATTGAGCATATTGCAA+TGG | 0.579779 | 6_4:+21753733 | Msa0982110:CDS |
TACCGCATTCACTGTGACCG+TGG | 0.580033 | 6_4:+21751929 | Msa0982110:CDS |
CACCTCTCCTCTCTTGTCCA+CGG | 0.580545 | 6_4:+21750812 | Msa0982110:CDS |
GAATGTCTTCGATGGCCTCA+GGG | 0.580551 | 6_4:-21751583 | None:intergenic |
AAAAGCAGCATTGTGAGTTG+AGG | 0.581051 | 6_4:-21751333 | None:intergenic |
GAGTTGAATCTCTAGATGCA+AGG | 0.584364 | 6_4:-21752453 | None:intergenic |
ATCTGCATTGACATCTGGAG+GGG | 0.586176 | 6_4:+21751364 | Msa0982110:CDS |
GAAGTTACCGTGGACAAGAG+AGG | 0.590332 | 6_4:-21750819 | None:intergenic |
CGAAGACATTCGTCAAGGAA+AGG | 0.592026 | 6_4:+21751595 | Msa0982110:CDS |
GTGGGAAAATATGGCCTGGT+CGG | 0.598146 | 6_4:-21752489 | None:intergenic |
GTATATCTACGCGGACATGA+AGG | 0.601774 | 6_4:+21754014 | Msa0982110:CDS |
ATGGAACAGATTGAGGCTGC+CGG | 0.604204 | 6_4:+21753978 | Msa0982110:CDS |
TTCCCACTAAAATACAGGGA+TGG | 0.605130 | 6_4:+21752505 | Msa0982110:CDS |
AATGGGCCACGTCTATGGCA+TGG | 0.606179 | 6_4:+21754714 | Msa0982110:CDS |
CTACGCGGACATGAAGGAAG+AGG | 0.608496 | 6_4:+21754020 | Msa0982110:CDS |
ATGGAACTTAACAACGGCAA+TGG | 0.608599 | 6_4:+21754733 | Msa0982110:CDS |
CTGCAAGAATACCTACAATG+TGG | 0.611887 | 6_4:+21753672 | Msa0982110:CDS |
CCTGGTCGGTTGAAATCAGA+CGG | 0.613895 | 6_4:-21752475 | None:intergenic |
ATGGAGAAGATGTTCTTGTG+AGG | 0.618966 | 6_4:+21753880 | Msa0982110:CDS |
AGTTGAATCTCTAGATGCAA+GGG | 0.619240 | 6_4:-21752452 | None:intergenic |
GAGCTTAGGTAATCTAGCCA+TGG | 0.622161 | 6_4:-21752635 | None:intergenic |
CTAAACATGGTACCACCACA+GGG | 0.625510 | 6_4:+21752395 | Msa0982110:CDS |
GACTCTAGGGAATATGGCAT+AGG | 0.625669 | 6_4:+21754134 | Msa0982110:CDS |
CCACTAAAATACAGGGATGG+TGG | 0.628481 | 6_4:+21752508 | Msa0982110:CDS |
GAACACCGGCATCAGACTCA+GGG | 0.628940 | 6_4:+21751486 | Msa0982110:CDS |
AAAGTCGTCTCTATGAAAGA+GGG | 0.633155 | 6_4:-21750574 | None:intergenic |
AACAGATTGAGGCTGCCGGT+AGG | 0.636736 | 6_4:+21753982 | Msa0982110:CDS |
TTGAGCTGACACCCCTGTGG+TGG | 0.636935 | 6_4:-21752407 | None:intergenic |
GCTACAATAACTCATGTCAG+TGG | 0.640830 | 6_4:+21755125 | Msa0982110:three_prime_UTR |
AGATTATATTCCAATAAGCA+AGG | 0.641533 | 6_4:-21755080 | None:intergenic |
AATCTGCATTGACATCTGGA+GGG | 0.646026 | 6_4:+21751363 | Msa0982110:CDS |
TATTTGCAGGATGCTAAACA+TGG | 0.653209 | 6_4:+21752382 | Msa0982110:intron |
CATCCTGTAAGTTATAAGCA+CGG | 0.654892 | 6_4:-21754064 | None:intergenic |
TCTGCATTGACATCTGGAGG+GGG | 0.656751 | 6_4:+21751365 | Msa0982110:CDS |
TACCACGGTCACAGTGAATG+CGG | 0.656958 | 6_4:-21751931 | None:intergenic |
TACCGTGGACAAGAGAGGAG+AGG | 0.658759 | 6_4:-21750814 | None:intergenic |
TGTGAGATTGTAGATGATGA+CGG | 0.659733 | 6_4:+21752610 | Msa0982110:CDS |
GCCATCGAAGACATTCGTCA+AGG | 0.667650 | 6_4:+21751590 | Msa0982110:CDS |
GGAACAGTCTAATGGAACAC+CGG | 0.671680 | 6_4:+21751472 | Msa0982110:CDS |
GATGAAGATAGAGAAAACGA+AGG | 0.672267 | 6_4:+21751747 | Msa0982110:CDS |
CGATACCGTAGAAGCCAATG+AGG | 0.672536 | 6_4:+21754094 | Msa0982110:CDS |
CAAGAATACCTACAATGTGG+GGG | 0.672554 | 6_4:+21753675 | Msa0982110:CDS |
ATGAAAGAGGGAAAGTGGGG+AGG | 0.673501 | 6_4:-21750562 | None:intergenic |
TGGACAAGAGAGGAGAGGTG+AGG | 0.674160 | 6_4:-21750809 | None:intergenic |
TAAGTTCCATGCCATAGACG+TGG | 0.678127 | 6_4:-21754720 | None:intergenic |
TCTATGAAAGAGGGAAAGTG+GGG | 0.691721 | 6_4:-21750565 | None:intergenic |
ATCTTGAGCTGACACCCCTG+TGG | 0.696438 | 6_4:-21752410 | None:intergenic |
GACGTGATAAGAGTTAACAA+CGG | 0.711055 | 6_4:-21754655 | None:intergenic |
TATGGCATGGAACTTAACAA+CGG | 0.722153 | 6_4:+21754727 | Msa0982110:CDS |
GGATCTGCCAGATGTGACTG+TGG | 0.728800 | 6_4:+21753936 | Msa0982110:CDS |
CAGGAAGTAACGAAGAAACG+CGG | 0.760732 | 6_4:-21750537 | None:intergenic |
GGAGTACTTGTATATCTACG+CGG | 0.793030 | 6_4:+21754005 | Msa0982110:CDS |
TAAACATGGTACCACCACAG+GGG | 0.794302 | 6_4:+21752396 | Msa0982110:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAATTTGTTGAAATTAAA+TGG | + | chr6_4:21752243-21752262 | Msa0982110:intron | 10.0% |
!! | TCTTAATATTTGCATATTTA+TGG | + | chr6_4:21752751-21752770 | Msa0982110:intron | 15.0% |
!!! | AATGGAATTTTTATATTTTC+TGG | + | chr6_4:21753018-21753037 | Msa0982110:intron | 15.0% |
!! | TTATTGTAAAAAATCCTTTA+TGG | - | chr6_4:21754194-21754213 | None:intergenic | 15.0% |
!!! | TGTTTATTAAAGAGATATTT+TGG | + | chr6_4:21754304-21754323 | Msa0982110:intron | 15.0% |
!!! | ATTTTAACTGTTTAAATACA+TGG | + | chr6_4:21754462-21754481 | Msa0982110:intron | 15.0% |
!!! | ATTAATTTATTGTCACTTTT+TGG | - | chr6_4:21754884-21754903 | None:intergenic | 15.0% |
!!! | AGTTAATTTGGTCAAATTAA+AGG | - | chr6_4:21750725-21750744 | None:intergenic | 20.0% |
!! | CAAAACTATTCATATTCAAA+TGG | + | chr6_4:21750759-21750778 | Msa0982110:exon | 20.0% |
!! | TGGATCATGAAAAAATATAT+GGG | - | chr6_4:21750890-21750909 | None:intergenic | 20.0% |
!!! | ATTGAATAATTTGAAGTGAT+TGG | - | chr6_4:21751279-21751298 | None:intergenic | 20.0% |
!! | TATAATTCACTTTGACAATA+GGG | - | chr6_4:21751307-21751326 | None:intergenic | 20.0% |
!! | TTATAATTCACTTTGACAAT+AGG | - | chr6_4:21751308-21751327 | None:intergenic | 20.0% |
!! | TTCCTTAATTAGAATAGATT+CGG | - | chr6_4:21751456-21751475 | None:intergenic | 20.0% |
!!! | ATTAAATGGTTTTCAAATCA+AGG | + | chr6_4:21752257-21752276 | Msa0982110:intron | 20.0% |
!!! | ACAATTTAAAATGTATTTGC+AGG | + | chr6_4:21752369-21752388 | Msa0982110:intron | 20.0% |
!! | TTGATATCTCACAATATATA+TGG | + | chr6_4:21752851-21752870 | Msa0982110:intron | 20.0% |
!! | TAAAAAAAACTCGTATTCAA+TGG | + | chr6_4:21753064-21753083 | Msa0982110:intron | 20.0% |
!! | AATATATTAGAATTGCTCAA+TGG | + | chr6_4:21754166-21754185 | Msa0982110:intron | 20.0% |
!!! | TTTTACAATAACATTTTGAG+AGG | + | chr6_4:21754203-21754222 | Msa0982110:intron | 20.0% |
! | TGAACTAGAAGAAGTTAATT+TGG | - | chr6_4:21750737-21750756 | None:intergenic | 25.0% |
! | GAAAAAATATATGGGGAAAA+TGG | - | chr6_4:21750882-21750901 | None:intergenic | 25.0% |
! | GGATCATGAAAAAATATATG+GGG | - | chr6_4:21750889-21750908 | None:intergenic | 25.0% |
! | GTGGATCATGAAAAAATATA+TGG | - | chr6_4:21750891-21750910 | None:intergenic | 25.0% |
! | TATTGTATTGAGAAAAGAAG+TGG | - | chr6_4:21750910-21750929 | None:intergenic | 25.0% |
! | CGTATCATATCATATGATAA+AGG | - | chr6_4:21750933-21750952 | None:intergenic | 25.0% |
! | TTATCATATGATATGATACG+TGG | + | chr6_4:21750933-21750952 | Msa0982110:intron | 25.0% |
!!! | AAATCTGTTATGTTTTGAAC+TGG | + | chr6_4:21751146-21751165 | Msa0982110:intron | 25.0% |
!! | AATTTTCTGTCACTCTTTTA+AGG | + | chr6_4:21751212-21751231 | Msa0982110:intron | 25.0% |
! | TGAAAAACAGATCAAATCAA+AGG | - | chr6_4:21751245-21751264 | None:intergenic | 25.0% |
!!! | TTTGATCTGTTTTTCAATGT+AGG | + | chr6_4:21751249-21751268 | Msa0982110:intron | 25.0% |
!! | AATAATTTGAAGTGATTGGA+TGG | - | chr6_4:21751275-21751294 | None:intergenic | 25.0% |
!!! | ATAATCTCATTGGTGTTTTT+CGG | - | chr6_4:21751407-21751426 | None:intergenic | 25.0% |
! | TTTACCAATGATAATCTCAT+TGG | - | chr6_4:21751417-21751436 | None:intergenic | 25.0% |
! | AACAAAATCTATCATGATCT+TGG | - | chr6_4:21751695-21751714 | None:intergenic | 25.0% |
! | TTGTTTATTAATCATGCAGA+TGG | + | chr6_4:21751710-21751729 | Msa0982110:intron | 25.0% |
! | TTACAATATCTCTTTGACTA+AGG | + | chr6_4:21751996-21752015 | Msa0982110:intron | 25.0% |
! | ACTAAGGAAATGTTGTTAAA+TGG | + | chr6_4:21752012-21752031 | Msa0982110:intron | 25.0% |
! | TAGAAAATGTTGTCAATAAG+AGG | + | chr6_4:21752087-21752106 | Msa0982110:intron | 25.0% |
! | TTAATCTGTTATGCTATTGA+AGG | + | chr6_4:21752293-21752312 | Msa0982110:intron | 25.0% |
!!! | AAGGAATTTTGTTTTGATGT+GGG | + | chr6_4:21752312-21752331 | Msa0982110:intron | 25.0% |
!!! | TGTATTTTAGTGGGAAAATA+TGG | - | chr6_4:21752501-21752520 | None:intergenic | 25.0% |
!! | ATATTTTCCCACTAAAATAC+AGG | + | chr6_4:21752500-21752519 | Msa0982110:CDS | 25.0% |
!! | TATTTTCCCACTAAAATACA+GGG | + | chr6_4:21752501-21752520 | Msa0982110:CDS | 25.0% |
! | ATTTAGTATGTTGCATATGT+TGG | - | chr6_4:21752828-21752847 | None:intergenic | 25.0% |
! | ACTAAATGATTGAACTAACT+CGG | + | chr6_4:21752886-21752905 | Msa0982110:intron | 25.0% |
! | TATAAAAATTCCATTCAGTG+AGG | - | chr6_4:21753013-21753032 | None:intergenic | 25.0% |
!!! | TTAACTTTAGGATCCAAATA+GGG | + | chr6_4:21753122-21753141 | Msa0982110:intron | 25.0% |
!! | ATAAAATGAAGGAACACTTT+TGG | + | chr6_4:21753148-21753167 | Msa0982110:intron | 25.0% |
!! | TACTGAACTTACTATTTTGT+TGG | - | chr6_4:21753280-21753299 | None:intergenic | 25.0% |
!!! | TTTATAAGTCTCGTTTTTCA+AGG | + | chr6_4:21753535-21753554 | Msa0982110:intron | 25.0% |
! | ACAAGGAGATTAAAACTTAT+TGG | + | chr6_4:21753600-21753619 | Msa0982110:intron | 25.0% |
! | TTATAACAGTATGATGTGAA+TGG | - | chr6_4:21753701-21753720 | None:intergenic | 25.0% |
! | TTGACTATTTGTAATTTGAC+AGG | + | chr6_4:21753845-21753864 | Msa0982110:intron | 25.0% |
! | TGACTATTTGTAATTTGACA+GGG | + | chr6_4:21753846-21753865 | Msa0982110:intron | 25.0% |
! | ACAATGTCAATTTAGTCATT+CGG | - | chr6_4:21754330-21754349 | None:intergenic | 25.0% |
! | ATTGACATTGTTCGATTAAA+TGG | + | chr6_4:21754339-21754358 | Msa0982110:intron | 25.0% |
! | AACAATCCAACAAAATATGT+TGG | + | chr6_4:21754595-21754614 | Msa0982110:CDS | 25.0% |
! | ATTTGATTCTTCAACAGTAT+TGG | - | chr6_4:21754764-21754783 | None:intergenic | 25.0% |
! | GTATGATATATGTAGGTAAT+AGG | - | chr6_4:21754821-21754840 | None:intergenic | 25.0% |
! | TTGTTGTGTATGATATATGT+AGG | - | chr6_4:21754828-21754847 | None:intergenic | 25.0% |
! | TATATCATACACAACAAAAG+AGG | + | chr6_4:21754831-21754850 | Msa0982110:three_prime_UTR | 25.0% |
! | AGATTATATTCCAATAAGCA+AGG | - | chr6_4:21755083-21755102 | None:intergenic | 25.0% |
! | TTATTGGAATATAATCTACC+AGG | + | chr6_4:21755086-21755105 | Msa0982110:three_prime_UTR | 25.0% |
!!! | TGTTGTTGTTGTTGTTGTTT+TGG | - | chr6_4:21750664-21750683 | None:intergenic | 30.0% |
TTGAATGTAATCACATGTGT+CGG | - | chr6_4:21751095-21751114 | None:intergenic | 30.0% | |
!!! | CTCGTTGCAGTTTTAAATTT+TGG | + | chr6_4:21751189-21751208 | Msa0982110:intron | 30.0% |
AACACCAATGAGATTATCAT+TGG | + | chr6_4:21751410-21751429 | Msa0982110:CDS | 30.0% | |
TGCCGAATCTATTCTAATTA+AGG | + | chr6_4:21751451-21751470 | Msa0982110:CDS | 30.0% | |
CTAATTAAGGAACAGTCTAA+TGG | + | chr6_4:21751464-21751483 | Msa0982110:CDS | 30.0% | |
TACTATAAAAGCCATAGCTT+CGG | - | chr6_4:21751805-21751824 | None:intergenic | 30.0% | |
! | ATGGCTTTTATAGTAAAGCA+TGG | + | chr6_4:21751810-21751829 | Msa0982110:CDS | 30.0% |
TTTATAGTAAAGCATGGAAC+TGG | + | chr6_4:21751816-21751835 | Msa0982110:CDS | 30.0% | |
AAGTATGAATGAAGAAGATC+TGG | + | chr6_4:21751851-21751870 | Msa0982110:CDS | 30.0% | |
ACGAATAGTAATACATACCA+CGG | - | chr6_4:21751949-21751968 | None:intergenic | 30.0% | |
TAATTGCATCTATACACATC+TGG | + | chr6_4:21751968-21751987 | Msa0982110:intron | 30.0% | |
AAGGAAATGTTGTTAAATGG+CGG | + | chr6_4:21752015-21752034 | Msa0982110:intron | 30.0% | |
!!! | GAAGGAATTTTGTTTTGATG+TGG | + | chr6_4:21752311-21752330 | Msa0982110:intron | 30.0% |
!!! | ATTTTGTTTTGATGTGGGTT+AGG | + | chr6_4:21752317-21752336 | Msa0982110:intron | 30.0% |
! | AATTTTCAAATTCTCACGCT+TGG | - | chr6_4:21752671-21752690 | None:intergenic | 30.0% |
AATCATTTAGTCACGATTCA+AGG | - | chr6_4:21752877-21752896 | None:intergenic | 30.0% | |
TTTGTTAAAACCTCACTGAA+TGG | + | chr6_4:21753000-21753019 | Msa0982110:intron | 30.0% | |
TCAATGGTTCTCATAGAAAA+TGG | + | chr6_4:21753080-21753099 | Msa0982110:intron | 30.0% | |
CAATGGTTCTCATAGAAAAT+GGG | + | chr6_4:21753081-21753100 | Msa0982110:intron | 30.0% | |
AATGGTTCTCATAGAAAATG+GGG | + | chr6_4:21753082-21753101 | Msa0982110:intron | 30.0% | |
GAGAGAAAGATGTTAACTTT+AGG | + | chr6_4:21753110-21753129 | Msa0982110:intron | 30.0% | |
!! | GTTAACTTTAGGATCCAAAT+AGG | + | chr6_4:21753121-21753140 | Msa0982110:intron | 30.0% |
! | TTCATTTTATCCACCCTATT+TGG | - | chr6_4:21753138-21753157 | None:intergenic | 30.0% |
AAATAGGGTGGATAAAATGA+AGG | + | chr6_4:21753137-21753156 | Msa0982110:intron | 30.0% | |
ACTATAGTAATGTATCACTC+AGG | + | chr6_4:21753179-21753198 | Msa0982110:intron | 30.0% | |
AAGTCATTAGAGCGAAAATT+GGG | + | chr6_4:21753364-21753383 | Msa0982110:intron | 30.0% | |
! | GATACTTCTTGTTGCTTATT+TGG | + | chr6_4:21753572-21753591 | Msa0982110:intron | 30.0% |
TTGCTTATTTGGTCATAACA+AGG | + | chr6_4:21753583-21753602 | Msa0982110:intron | 30.0% | |
AAGAAAGAGAGATCAATTAG+TGG | + | chr6_4:21753637-21753656 | Msa0982110:CDS | 30.0% | |
TGTTATAAGTCTCTGTTAGA+CGG | + | chr6_4:21753713-21753732 | Msa0982110:CDS | 30.0% | |
TGTATATAATACAGTTTCCG+TGG | + | chr6_4:21753775-21753794 | Msa0982110:intron | 30.0% | |
! | CACTAAGTGTTGCAAAATAT+AGG | - | chr6_4:21753806-21753825 | None:intergenic | 30.0% |
! | TATTTTGCAACACTTAGTGA+TGG | + | chr6_4:21753807-21753826 | Msa0982110:intron | 30.0% |
! | ATTTTGCAACACTTAGTGAT+GGG | + | chr6_4:21753808-21753827 | Msa0982110:intron | 30.0% |
TTCAGTCATTGAAACTGTAA+GGG | - | chr6_4:21754405-21754424 | None:intergenic | 30.0% | |
TTTCAGTCATTGAAACTGTA+AGG | - | chr6_4:21754406-21754425 | None:intergenic | 30.0% | |
TAATAGGTAAAAAGAAGGCA+TGG | - | chr6_4:21754805-21754824 | None:intergenic | 30.0% | |
GTAGGTAATAGGTAAAAAGA+AGG | - | chr6_4:21754810-21754829 | None:intergenic | 30.0% | |
AGTGCCAATCATTATAGATA+AGG | + | chr6_4:21754990-21755009 | Msa0982110:three_prime_UTR | 30.0% | |
!! | ATGGCCTTATCTATAATGAT+TGG | - | chr6_4:21754997-21755016 | None:intergenic | 30.0% |
! | CCTGAAAATTGTATTGGTAA+TGG | - | chr6_4:21755016-21755035 | None:intergenic | 30.0% |
! | CCATTACCAATACAATTTTC+AGG | + | chr6_4:21755013-21755032 | Msa0982110:three_prime_UTR | 30.0% |
CGAAAACCTGAAAATTGTAT+TGG | - | chr6_4:21755022-21755041 | None:intergenic | 30.0% | |
CATTGTATTACCTTGCTTAT+TGG | + | chr6_4:21755070-21755089 | Msa0982110:three_prime_UTR | 30.0% | |
GCAAAAATAATGAAGAAACC+TGG | - | chr6_4:21755107-21755126 | None:intergenic | 30.0% | |
AAAGTCGTCTCTATGAAAGA+GGG | - | chr6_4:21750577-21750596 | None:intergenic | 35.0% | |
TAAAGTCGTCTCTATGAAAG+AGG | - | chr6_4:21750578-21750597 | None:intergenic | 35.0% | |
TGGTTTGATGAGATTAACAG+TGG | - | chr6_4:21750862-21750881 | None:intergenic | 35.0% | |
CTGTGTGTGTTAACTAACAA+TGG | - | chr6_4:21750965-21750984 | None:intergenic | 35.0% | |
! | GTTAAATCTGCATTGACATC+TGG | + | chr6_4:21751359-21751378 | Msa0982110:CDS | 35.0% |
!! | TGTTTTTCGGATAGGAAAGT+AGG | - | chr6_4:21751394-21751413 | None:intergenic | 35.0% |
ATTGGTAAAGATCTCGTTGT+TGG | + | chr6_4:21751428-21751447 | Msa0982110:CDS | 35.0% | |
GGACTACAATGACTATGATT+TGG | + | chr6_4:21751532-21751551 | Msa0982110:CDS | 35.0% | |
TAGAAGAAAAACCTTCTGCA+GGG | - | chr6_4:21751562-21751581 | None:intergenic | 35.0% | |
ATAGAAGAAAAACCTTCTGC+AGG | - | chr6_4:21751563-21751582 | None:intergenic | 35.0% | |
ATTAATCATGCAGATGGTAG+TGG | + | chr6_4:21751716-21751735 | Msa0982110:intron | 35.0% | |
GATGAAGATAGAGAAAACGA+AGG | + | chr6_4:21751747-21751766 | Msa0982110:CDS | 35.0% | |
AAACGAAGGAGACTTGATAA+TGG | + | chr6_4:21751761-21751780 | Msa0982110:CDS | 35.0% | |
ACTATAAAAGCCATAGCTTC+GGG | - | chr6_4:21751804-21751823 | None:intergenic | 35.0% | |
TGAAGAAGATCTGGATAGAT+TGG | + | chr6_4:21751860-21751879 | Msa0982110:CDS | 35.0% | |
TATTTGCAGGATGCTAAACA+TGG | + | chr6_4:21752382-21752401 | Msa0982110:intron | 35.0% | |
AGTTGAATCTCTAGATGCAA+GGG | - | chr6_4:21752455-21752474 | None:intergenic | 35.0% | |
TGTGAGATTGTAGATGATGA+CGG | + | chr6_4:21752610-21752629 | Msa0982110:CDS | 35.0% | |
!! | TATCTATCGCTGACTTGATA+AGG | + | chr6_4:21752692-21752711 | Msa0982110:CDS | 35.0% |
TTGAACTAACTCGGACTTTA+TGG | + | chr6_4:21752895-21752914 | Msa0982110:intron | 35.0% | |
! | GTTCTTAATTTTGTCTGACG+AGG | + | chr6_4:21752917-21752936 | Msa0982110:intron | 35.0% |
TGTTGTATGAGACTGTATGT+TGG | + | chr6_4:21753243-21753262 | Msa0982110:intron | 35.0% | |
ACACAAGACAAGACATAATC+AGG | + | chr6_4:21753337-21753356 | Msa0982110:intron | 35.0% | |
CAAGTCATTAGAGCGAAAAT+TGG | + | chr6_4:21753363-21753382 | Msa0982110:intron | 35.0% | |
AGTCATTAGAGCGAAAATTG+GGG | + | chr6_4:21753365-21753384 | Msa0982110:intron | 35.0% | |
!! | TTTTCAAGGTTTTTGCTGTC+TGG | + | chr6_4:21753549-21753568 | Msa0982110:intron | 35.0% |
!! | TTTCAAGGTTTTTGCTGTCT+GGG | + | chr6_4:21753550-21753569 | Msa0982110:intron | 35.0% |
TGCAAGAATACCTACAATGT+GGG | + | chr6_4:21753673-21753692 | Msa0982110:CDS | 35.0% | |
GTTATAAGTCTCTGTTAGAC+GGG | + | chr6_4:21753714-21753733 | Msa0982110:CDS | 35.0% | |
TGAGCATATTGCAATGGTTA+AGG | + | chr6_4:21753739-21753758 | Msa0982110:CDS | 35.0% | |
GCAAAATATAGGTAGTTCCA+CGG | - | chr6_4:21753795-21753814 | None:intergenic | 35.0% | |
!!! | TTAGTGATGGGTTTTTGACA+AGG | + | chr6_4:21753820-21753839 | Msa0982110:intron | 35.0% |
TGTCTAACTGGAGACATATT+TGG | + | chr6_4:21753915-21753934 | Msa0982110:CDS | 35.0% | |
CATCCTGTAAGTTATAAGCA+CGG | - | chr6_4:21754067-21754086 | None:intergenic | 35.0% | |
GCTTATAACTTACAGGATGA+TGG | + | chr6_4:21754068-21754087 | Msa0982110:CDS | 35.0% | |
ATTGCTCAATGGTTCCATAA+AGG | + | chr6_4:21754177-21754196 | Msa0982110:intron | 35.0% | |
ATGGAAAGTTATCACAGACA+TGG | + | chr6_4:21754499-21754518 | Msa0982110:intron | 35.0% | |
GAAAAAGTAGCAACATTCCA+AGG | - | chr6_4:21754531-21754550 | None:intergenic | 35.0% | |
!!! | TGCTACTTTTTCAGATACTG+AGG | + | chr6_4:21754539-21754558 | Msa0982110:intron | 35.0% |
!!! | GCTACTTTTTCAGATACTGA+GGG | + | chr6_4:21754540-21754559 | Msa0982110:intron | 35.0% |
! | TTGAGGCCAACATATTTTGT+TGG | - | chr6_4:21754604-21754623 | None:intergenic | 35.0% |
! | ACAAAATATGTTGGCCTCAA+AGG | + | chr6_4:21754604-21754623 | Msa0982110:CDS | 35.0% |
ACGTGATAAGAGTTAACAAC+GGG | - | chr6_4:21754657-21754676 | None:intergenic | 35.0% | |
GACGTGATAAGAGTTAACAA+CGG | - | chr6_4:21754658-21754677 | None:intergenic | 35.0% | |
CTCTAAGTATCTCTTGTTCT+CGG | - | chr6_4:21754680-21754699 | None:intergenic | 35.0% | |
TATGGCATGGAACTTAACAA+CGG | + | chr6_4:21754727-21754746 | Msa0982110:CDS | 35.0% | |
GAAGAATCAAATGTTGTTGC+TGG | + | chr6_4:21754772-21754791 | Msa0982110:CDS | 35.0% | |
! | TTGCCTGATTTTCTTCAAGA+AGG | + | chr6_4:21754934-21754953 | Msa0982110:three_prime_UTR | 35.0% |
!! | TTCAGGTTTTCGTCTTTCTT+TGG | + | chr6_4:21755030-21755049 | Msa0982110:three_prime_UTR | 35.0% |
TCTATGAAAGAGGGAAAGTG+GGG | - | chr6_4:21750568-21750587 | None:intergenic | 40.0% | |
CTCTATGAAAGAGGGAAAGT+GGG | - | chr6_4:21750569-21750588 | None:intergenic | 40.0% | |
TCTCTATGAAAGAGGGAAAG+TGG | - | chr6_4:21750570-21750589 | None:intergenic | 40.0% | |
ACAGTGGATCATGAAAAGAG+AGG | - | chr6_4:21750846-21750865 | None:intergenic | 40.0% | |
! | AAAGCAGCATTGTGAGTTGA+GGG | - | chr6_4:21751335-21751354 | None:intergenic | 40.0% |
AAAAGCAGCATTGTGAGTTG+AGG | - | chr6_4:21751336-21751355 | None:intergenic | 40.0% | |
! | AAATCTGCATTGACATCTGG+AGG | + | chr6_4:21751362-21751381 | Msa0982110:CDS | 40.0% |
! | AATCTGCATTGACATCTGGA+GGG | + | chr6_4:21751363-21751382 | Msa0982110:CDS | 40.0% |
!! | CTCATTGGTGTTTTTCGGAT+AGG | - | chr6_4:21751402-21751421 | None:intergenic | 40.0% |
!!! | ACCAAGCACTTTTTTCTCTG+CGG | + | chr6_4:21751511-21751530 | Msa0982110:CDS | 40.0% |
! | AGGTTTTTCTTCTATCCCTG+AGG | + | chr6_4:21751568-21751587 | Msa0982110:CDS | 40.0% |
!! | CTTGATAATGGCAGCAGAAT+TGG | + | chr6_4:21751773-21751792 | Msa0982110:CDS | 40.0% |
TAGATTGGAGCTTCCTTTGA+TGG | + | chr6_4:21751875-21751894 | Msa0982110:CDS | 40.0% | |
CAATCGACAACATTGGACTA+AGG | + | chr6_4:21752180-21752199 | Msa0982110:intron | 40.0% | |
!! | GTGGGTTAGGCATTTATTGA+TGG | + | chr6_4:21752330-21752349 | Msa0982110:intron | 40.0% |
AGATAGGGCAACTACAGTAT+TGG | + | chr6_4:21752429-21752448 | Msa0982110:CDS | 40.0% | |
GAGTTGAATCTCTAGATGCA+AGG | - | chr6_4:21752456-21752475 | None:intergenic | 40.0% | |
TTTAGTGGGAAAATATGGCC+TGG | - | chr6_4:21752496-21752515 | None:intergenic | 40.0% | |
TTCCCACTAAAATACAGGGA+TGG | + | chr6_4:21752505-21752524 | Msa0982110:CDS | 40.0% | |
!!! | CACCATCCCTGTATTTTAGT+GGG | - | chr6_4:21752510-21752529 | None:intergenic | 40.0% |
! | TCTTACCATACTTGCTGGTT+TGG | + | chr6_4:21752570-21752589 | Msa0982110:CDS | 40.0% |
!! | ATCGCTGACTTGATAAGGTA+TGG | + | chr6_4:21752697-21752716 | Msa0982110:intron | 40.0% |
!! | ACTTTAGGATCCAAATAGGG+TGG | + | chr6_4:21753125-21753144 | Msa0982110:intron | 40.0% |
ATGTATCACTCAGGCTTAGA+AGG | + | chr6_4:21753188-21753207 | Msa0982110:intron | 40.0% | |
ACAGTCTCATACAACACTGT+AGG | - | chr6_4:21753239-21753258 | None:intergenic | 40.0% | |
AGTTCAGTATTCCAGAGATG+AGG | + | chr6_4:21753291-21753310 | Msa0982110:intron | 40.0% | |
! | CTCTACCATTTTCCTACAGT+GGG | - | chr6_4:21753396-21753415 | None:intergenic | 40.0% |
! | ACTCTACCATTTTCCTACAG+TGG | - | chr6_4:21753397-21753416 | None:intergenic | 40.0% |
GTACTTAAACCACATAAGCC+AGG | - | chr6_4:21753420-21753439 | None:intergenic | 40.0% | |
!! | CATTCATAGAAGCACTGACT+AGG | + | chr6_4:21753450-21753469 | Msa0982110:intron | 40.0% |
GAATTTGACTACCCTGTATC+TGG | - | chr6_4:21753484-21753503 | None:intergenic | 40.0% | |
CTGCAAGAATACCTACAATG+TGG | + | chr6_4:21753672-21753691 | Msa0982110:CDS | 40.0% | |
GCAAGAATACCTACAATGTG+GGG | + | chr6_4:21753674-21753693 | Msa0982110:CDS | 40.0% | |
CAAGAATACCTACAATGTGG+GGG | + | chr6_4:21753675-21753694 | Msa0982110:CDS | 40.0% | |
GTAATTTGACAGGGTGACAT+TGG | + | chr6_4:21753855-21753874 | Msa0982110:intron | 40.0% | |
ATGGAGAAGATGTTCTTGTG+AGG | + | chr6_4:21753880-21753899 | Msa0982110:CDS | 40.0% | |
TGGAGAAGATGTTCTTGTGA+GGG | + | chr6_4:21753881-21753900 | Msa0982110:CDS | 40.0% | |
AAATCAGCTTGCACTTGCAA+TGG | + | chr6_4:21753959-21753978 | Msa0982110:CDS | 40.0% | |
ACTTGCAATGGAACAGATTG+AGG | + | chr6_4:21753971-21753990 | Msa0982110:CDS | 40.0% | |
ATATACAAGTACTCCCCTAC+CGG | - | chr6_4:21754000-21754019 | None:intergenic | 40.0% | |
! | GGAGTACTTGTATATCTACG+CGG | + | chr6_4:21754005-21754024 | Msa0982110:CDS | 40.0% |
!! | TGAAGGAAGAGGTATTGGAT+TGG | + | chr6_4:21754031-21754050 | Msa0982110:CDS | 40.0% |
!! | GAAGGAAGAGGTATTGGATT+GGG | + | chr6_4:21754032-21754051 | Msa0982110:CDS | 40.0% |
GTCATTGAAACTGTAAGGGT+CGG | - | chr6_4:21754401-21754420 | None:intergenic | 40.0% | |
TTTCAGATACTGAGGGATCT+AGG | + | chr6_4:21754547-21754566 | Msa0982110:intron | 40.0% | |
!! | ATGGTTTGACTGTTTCTGGT+AGG | + | chr6_4:21754629-21754648 | Msa0982110:CDS | 40.0% |
AGAGACCAAACGTGTGAAAA+TGG | + | chr6_4:21754696-21754715 | Msa0982110:CDS | 40.0% | |
GAGACCAAACGTGTGAAAAT+GGG | + | chr6_4:21754697-21754716 | Msa0982110:CDS | 40.0% | |
ATGGAACTTAACAACGGCAA+TGG | + | chr6_4:21754733-21754752 | Msa0982110:CDS | 40.0% | |
GTGCCTTCTTGAAGAAAATC+AGG | - | chr6_4:21754940-21754959 | None:intergenic | 40.0% | |
!! | TTCTTTGGTGTCTGTTACAG+AGG | + | chr6_4:21755045-21755064 | Msa0982110:three_prime_UTR | 40.0% |
GCTACAATAACTCATGTCAG+TGG | + | chr6_4:21755125-21755144 | Msa0982110:three_prime_UTR | 40.0% | |
CAGGAAGTAACGAAGAAACG+CGG | - | chr6_4:21750540-21750559 | None:intergenic | 45.0% | |
AAAGAGAGGAGAAGTTACCG+TGG | - | chr6_4:21750832-21750851 | None:intergenic | 45.0% | |
! | ATCTGCATTGACATCTGGAG+GGG | + | chr6_4:21751364-21751383 | Msa0982110:CDS | 45.0% |
GGAACAGTCTAATGGAACAC+CGG | + | chr6_4:21751472-21751491 | Msa0982110:CDS | 45.0% | |
!! | TCCGCAGAGAAAAAAGTGCT+TGG | - | chr6_4:21751515-21751534 | None:intergenic | 45.0% |
TCCTTGACGAATGTCTTCGA+TGG | - | chr6_4:21751594-21751613 | None:intergenic | 45.0% | |
CGAAGACATTCGTCAAGGAA+AGG | + | chr6_4:21751595-21751614 | Msa0982110:CDS | 45.0% | |
ATTGGAGCTTCCTTTGATGG+TGG | + | chr6_4:21751878-21751897 | Msa0982110:CDS | 45.0% | |
!! | TCCTTTGATGGTGGACAGTA+AGG | + | chr6_4:21751887-21751906 | Msa0982110:CDS | 45.0% |
AATCGCGCAATCGACAACAT+TGG | + | chr6_4:21752173-21752192 | Msa0982110:intron | 45.0% | |
CTAAACATGGTACCACCACA+GGG | + | chr6_4:21752395-21752414 | Msa0982110:CDS | 45.0% | |
TAAACATGGTACCACCACAG+GGG | + | chr6_4:21752396-21752415 | Msa0982110:CDS | 45.0% | |
!! | CCACCATCCCTGTATTTTAG+TGG | - | chr6_4:21752511-21752530 | None:intergenic | 45.0% |
CCACTAAAATACAGGGATGG+TGG | + | chr6_4:21752508-21752527 | Msa0982110:CDS | 45.0% | |
GCTGATCTTACCATACTTGC+TGG | + | chr6_4:21752565-21752584 | Msa0982110:CDS | 45.0% | |
!! | TGTAGATGATGACGGTTCCA+TGG | + | chr6_4:21752618-21752637 | Msa0982110:CDS | 45.0% |
GAGCTTAGGTAATCTAGCCA+TGG | - | chr6_4:21752638-21752657 | None:intergenic | 45.0% | |
!! | GCTGACTTGATAAGGTATGG+TGG | + | chr6_4:21752700-21752719 | Msa0982110:intron | 45.0% |
TAACGTTCTCACCTCATCTC+TGG | - | chr6_4:21753305-21753324 | None:intergenic | 45.0% | |
TAGCTCCCACTGTAGGAAAA+TGG | + | chr6_4:21753388-21753407 | Msa0982110:intron | 45.0% | |
GTAGGAAAATGGTAGAGTCC+TGG | + | chr6_4:21753399-21753418 | Msa0982110:intron | 45.0% | |
!! | CATAGAAGCACTGACTAGGA+AGG | + | chr6_4:21753454-21753473 | Msa0982110:intron | 45.0% |
TAGGAAGGTAGACCAGATAC+AGG | + | chr6_4:21753469-21753488 | Msa0982110:intron | 45.0% | |
AGGAAGGTAGACCAGATACA+GGG | + | chr6_4:21753470-21753489 | Msa0982110:intron | 45.0% | |
CGGGATTGAGCATATTGCAA+TGG | + | chr6_4:21753733-21753752 | Msa0982110:CDS | 45.0% | |
! | GTACACTCAGAGTGTCTAAC+TGG | + | chr6_4:21753903-21753922 | Msa0982110:CDS | 45.0% |
CTGATTTCCACAGTCACATC+TGG | - | chr6_4:21753946-21753965 | None:intergenic | 45.0% | |
GTATATCTACGCGGACATGA+AGG | + | chr6_4:21754014-21754033 | Msa0982110:CDS | 45.0% | |
! | GGACATGAAGGAAGAGGTAT+TGG | + | chr6_4:21754026-21754045 | Msa0982110:CDS | 45.0% |
AGTTATAAGCACGGAGCTTG+TGG | - | chr6_4:21754058-21754077 | None:intergenic | 45.0% | |
GCTCCGTGCTTATAACTTAC+AGG | + | chr6_4:21754061-21754080 | Msa0982110:CDS | 45.0% | |
!! | CAACTCCTCATTGGCTTCTA+CGG | - | chr6_4:21754102-21754121 | None:intergenic | 45.0% |
GTAGAAGCCAATGAGGAGTT+GGG | + | chr6_4:21754101-21754120 | Msa0982110:CDS | 45.0% | |
CCATATTCCCTAGAGTCAAC+AGG | - | chr6_4:21754131-21754150 | None:intergenic | 45.0% | |
!! | CCTGTTGACTCTAGGGAATA+TGG | + | chr6_4:21754128-21754147 | Msa0982110:CDS | 45.0% |
! | GACTCTAGGGAATATGGCAT+AGG | + | chr6_4:21754134-21754153 | Msa0982110:CDS | 45.0% |
CATGGCGATCACTGTTGTTA+TGG | + | chr6_4:21754480-21754499 | Msa0982110:intron | 45.0% | |
CACAGACATGGCTTAAACCT+TGG | + | chr6_4:21754511-21754530 | Msa0982110:intron | 45.0% | |
! | TATGTTGGCCTCAAAGGCTA+TGG | + | chr6_4:21754610-21754629 | Msa0982110:CDS | 45.0% |
CAGTCAAACCATAGCCTTTG+AGG | - | chr6_4:21754621-21754640 | None:intergenic | 45.0% | |
GGCTATGGTTTGACTGTTTC+TGG | + | chr6_4:21754625-21754644 | Msa0982110:CDS | 45.0% | |
TAAGTTCCATGCCATAGACG+TGG | - | chr6_4:21754723-21754742 | None:intergenic | 45.0% | |
ATGAAAGAGGGAAAGTGGGG+AGG | - | chr6_4:21750565-21750584 | None:intergenic | 50.0% | |
GAAGTTACCGTGGACAAGAG+AGG | - | chr6_4:21750822-21750841 | None:intergenic | 50.0% | |
! | TCTGCATTGACATCTGGAGG+GGG | + | chr6_4:21751365-21751384 | Msa0982110:CDS | 50.0% |
GATTTGGACATCCCTGCAGA+AGG | + | chr6_4:21751548-21751567 | Msa0982110:CDS | 50.0% | |
GAATGTCTTCGATGGCCTCA+GGG | - | chr6_4:21751586-21751605 | None:intergenic | 50.0% | |
GCCATCGAAGACATTCGTCA+AGG | + | chr6_4:21751590-21751609 | Msa0982110:CDS | 50.0% | |
GCCTTACTGTCCACCATCAA+AGG | - | chr6_4:21751891-21751910 | None:intergenic | 50.0% | |
TACCACGGTCACAGTGAATG+CGG | - | chr6_4:21751934-21751953 | None:intergenic | 50.0% | |
! | TGTTGTCGATTGCGCGATTG+CGG | - | chr6_4:21752172-21752191 | None:intergenic | 50.0% |
GCTAAACATGGTACCACCAC+AGG | + | chr6_4:21752394-21752413 | Msa0982110:CDS | 50.0% | |
!! | AGGGGTGTCAGCTCAAGATA+GGG | + | chr6_4:21752414-21752433 | Msa0982110:CDS | 50.0% |
CCTGGTCGGTTGAAATCAGA+CGG | - | chr6_4:21752478-21752497 | None:intergenic | 50.0% | |
GTGGGAAAATATGGCCTGGT+CGG | - | chr6_4:21752492-21752511 | None:intergenic | 50.0% | |
TGGCTCCAAACCAGCAAGTA+TGG | - | chr6_4:21752578-21752597 | None:intergenic | 50.0% | |
ATCTCACACAGAACTGCCAC+TGG | - | chr6_4:21752598-21752617 | None:intergenic | 50.0% | |
TTGGCAAATTCGCGGAGCTT+AGG | - | chr6_4:21752652-21752671 | None:intergenic | 50.0% | |
TCTCACGCTTGGCAAATTCG+CGG | - | chr6_4:21752660-21752679 | None:intergenic | 50.0% | |
TGGTAGAGTCCTGGCTTATG+TGG | + | chr6_4:21753408-21753427 | Msa0982110:intron | 50.0% | |
TGACAGGGTGACATTGGAGA+TGG | + | chr6_4:21753861-21753880 | Msa0982110:intron | 50.0% | |
ATGGAACAGATTGAGGCTGC+CGG | + | chr6_4:21753978-21753997 | Msa0982110:CDS | 50.0% | |
CGATACCGTAGAAGCCAATG+AGG | + | chr6_4:21754094-21754113 | Msa0982110:CDS | 50.0% | |
CGTAGAAGCCAATGAGGAGT+TGG | + | chr6_4:21754100-21754119 | Msa0982110:CDS | 50.0% | |
AGGCAATCCCAACTCCTCAT+TGG | - | chr6_4:21754111-21754130 | None:intergenic | 50.0% | |
!! | TGGGATTGCCTGTTGACTCT+AGG | + | chr6_4:21754120-21754139 | Msa0982110:CDS | 50.0% |
!! | GGGATTGCCTGTTGACTCTA+GGG | + | chr6_4:21754121-21754140 | Msa0982110:CDS | 50.0% |
AAACTGTAAGGGTCGGTCTG+AGG | - | chr6_4:21754394-21754413 | None:intergenic | 50.0% | |
! | GTGGCCCATTTTCACACGTT+TGG | - | chr6_4:21754704-21754723 | None:intergenic | 50.0% |
GTGAAAATGGGCCACGTCTA+TGG | + | chr6_4:21754709-21754728 | Msa0982110:CDS | 50.0% | |
TGGACAAGAGAGGAGAGGTG+AGG | - | chr6_4:21750812-21750831 | None:intergenic | 55.0% | |
CACCTCTCCTCTCTTGTCCA+CGG | + | chr6_4:21750812-21750831 | Msa0982110:CDS | 55.0% | |
TACCGTGGACAAGAGAGGAG+AGG | - | chr6_4:21750817-21750836 | None:intergenic | 55.0% | |
GAACACCGGCATCAGACTCA+GGG | + | chr6_4:21751486-21751505 | Msa0982110:CDS | 55.0% | |
GGTATCCCTGAGTCTGATGC+CGG | - | chr6_4:21751494-21751513 | None:intergenic | 55.0% | |
CGAATGTCTTCGATGGCCTC+AGG | - | chr6_4:21751587-21751606 | None:intergenic | 55.0% | |
ATTGGCAACGCCCGAAGCTA+TGG | + | chr6_4:21751791-21751810 | Msa0982110:CDS | 55.0% | |
TACCGCATTCACTGTGACCG+TGG | + | chr6_4:21751929-21751948 | Msa0982110:CDS | 55.0% | |
ATCTTGAGCTGACACCCCTG+TGG | - | chr6_4:21752413-21752432 | None:intergenic | 55.0% | |
!! | CAGGGGTGTCAGCTCAAGAT+AGG | + | chr6_4:21752413-21752432 | Msa0982110:CDS | 55.0% |
CCGTCTGATTTCAACCGACC+AGG | + | chr6_4:21752475-21752494 | Msa0982110:CDS | 55.0% | |
GGTGGTGTCTTGAAGAGAGC+TGG | + | chr6_4:21752526-21752545 | Msa0982110:CDS | 55.0% | |
!! | ACTTGCTGGTTTGGAGCCAG+TGG | + | chr6_4:21752579-21752598 | Msa0982110:CDS | 55.0% |
ATTGGGGTAGCTCCCACTGT+AGG | + | chr6_4:21753381-21753400 | Msa0982110:intron | 55.0% | |
GTGAATGGCCCCCACATTGT+AGG | - | chr6_4:21753686-21753705 | None:intergenic | 55.0% | |
GGATCTGCCAGATGTGACTG+TGG | + | chr6_4:21753936-21753955 | Msa0982110:CDS | 55.0% | |
AACAGATTGAGGCTGCCGGT+AGG | + | chr6_4:21753982-21754001 | Msa0982110:CDS | 55.0% | |
ACAGATTGAGGCTGCCGGTA+GGG | + | chr6_4:21753983-21754002 | Msa0982110:CDS | 55.0% | |
CTACGCGGACATGAAGGAAG+AGG | + | chr6_4:21754020-21754039 | Msa0982110:CDS | 55.0% | |
GGAATATGGCATAGGCGCAC+AGG | + | chr6_4:21754142-21754161 | Msa0982110:CDS | 55.0% | |
AATGGGCCACGTCTATGGCA+TGG | + | chr6_4:21754714-21754733 | Msa0982110:CDS | 55.0% | |
GGAACACCGGCATCAGACTC+AGG | + | chr6_4:21751485-21751504 | Msa0982110:CDS | 60.0% | |
TTGAGCTGACACCCCTGTGG+TGG | - | chr6_4:21752410-21752429 | None:intergenic | 60.0% | |
CAGATTGAGGCTGCCGGTAG+GGG | + | chr6_4:21753984-21754003 | Msa0982110:CDS | 60.0% | |
! | GAGGGAAAGTGGGGAGGTGC+AGG | - | chr6_4:21750559-21750578 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 21750525 | 21755160 | 21750525 | ID=Msa0982110;Name=Msa0982110 |
chr6_4 | mRNA | 21750525 | 21755160 | 21750525 | ID=Msa0982110-mRNA-1;Parent=Msa0982110;Name=Msa0982110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=253|1|1|1|1|1|7|359|540 |
chr6_4 | exon | 21750525 | 21750833 | 21750525 | ID=Msa0982110-mRNA-1:exon:6747;Parent=Msa0982110-mRNA-1 |
chr6_4 | exon | 21751271 | 21751616 | 21751271 | ID=Msa0982110-mRNA-1:exon:6748;Parent=Msa0982110-mRNA-1 |
chr6_4 | exon | 21751729 | 21751950 | 21751729 | ID=Msa0982110-mRNA-1:exon:6749;Parent=Msa0982110-mRNA-1 |
chr6_4 | exon | 21752391 | 21752713 | 21752391 | ID=Msa0982110-mRNA-1:exon:6750;Parent=Msa0982110-mRNA-1 |
chr6_4 | exon | 21753631 | 21753760 | 21753631 | ID=Msa0982110-mRNA-1:exon:6751;Parent=Msa0982110-mRNA-1 |
chr6_4 | exon | 21753867 | 21754163 | 21753867 | ID=Msa0982110-mRNA-1:exon:6752;Parent=Msa0982110-mRNA-1 |
chr6_4 | exon | 21754553 | 21755160 | 21754553 | ID=Msa0982110-mRNA-1:exon:6753;Parent=Msa0982110-mRNA-1 |
chr6_4 | five_prime_UTR | 21750525 | 21750777 | 21750525 | ID=Msa0982110-mRNA-1:five_prime_utr;Parent=Msa0982110-mRNA-1 |
chr6_4 | CDS | 21750778 | 21750833 | 21750778 | ID=Msa0982110-mRNA-1:cds;Parent=Msa0982110-mRNA-1 |
chr6_4 | CDS | 21751271 | 21751616 | 21751271 | ID=Msa0982110-mRNA-1:cds;Parent=Msa0982110-mRNA-1 |
chr6_4 | CDS | 21751729 | 21751950 | 21751729 | ID=Msa0982110-mRNA-1:cds;Parent=Msa0982110-mRNA-1 |
chr6_4 | CDS | 21752391 | 21752713 | 21752391 | ID=Msa0982110-mRNA-1:cds;Parent=Msa0982110-mRNA-1 |
chr6_4 | CDS | 21753631 | 21753760 | 21753631 | ID=Msa0982110-mRNA-1:cds;Parent=Msa0982110-mRNA-1 |
chr6_4 | CDS | 21753867 | 21754163 | 21753867 | ID=Msa0982110-mRNA-1:cds;Parent=Msa0982110-mRNA-1 |
chr6_4 | CDS | 21754553 | 21754801 | 21754553 | ID=Msa0982110-mRNA-1:cds;Parent=Msa0982110-mRNA-1 |
chr6_4 | three_prime_UTR | 21754802 | 21755160 | 21754802 | ID=Msa0982110-mRNA-1:three_prime_utr;Parent=Msa0982110-mRNA-1 |
Gene Sequence |
Protein sequence |