AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0982110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0982110 MtrunA17_Chr2g0279401 97.217 539 15 0 2 540 3 541 0.0 1084
Msa0982110 MtrunA17_Chr4g0050151 73.827 554 107 6 2 539 3 534 0.0 798
Msa0982110 MtrunA17_Chr2g0327771 66.910 411 135 1 112 521 97 507 0.0 575
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0982110 AT5G64300.1 75.000 504 112 4 20 521 38 529 0.0 770
Msa0982110 AT2G22450.1 71.220 410 107 4 89 496 74 474 0.0 597
Msa0982110 AT5G59750.1 58.434 498 198 5 23 517 8 499 0.0 581
Msa0982110 AT5G59750.2 54.699 532 198 6 23 517 8 533 0.0 563
Msa0982110 AT5G59750.3 57.045 440 180 5 23 459 8 441 1.60e-170 490

Find 166 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTATGGTTTGACTGTTTC+TGG 0.114584 6_4:+21754625 Msa0982110:CDS
CATTGTATTACCTTGCTTAT+TGG 0.184117 6_4:+21755070 Msa0982110:three_prime_UTR
AGTTAATTTGGTCAAATTAA+AGG 0.199367 6_4:-21750722 None:intergenic
TGCCGAATCTATTCTAATTA+AGG 0.215332 6_4:+21751451 Msa0982110:CDS
TGAACTAGAAGAAGTTAATT+TGG 0.226517 6_4:-21750734 None:intergenic
AGAGACCAAACGTGTGAAAA+TGG 0.231254 6_4:+21754696 Msa0982110:CDS
TGTCTAACTGGAGACATATT+TGG 0.294019 6_4:+21753915 Msa0982110:CDS
ATTGAATAATTTGAAGTGAT+TGG 0.310596 6_4:-21751276 None:intergenic
GAGGGAAAGTGGGGAGGTGC+AGG 0.311831 6_4:-21750556 None:intergenic
CTTGATAATGGCAGCAGAAT+TGG 0.313759 6_4:+21751773 Msa0982110:CDS
GTGAAAATGGGCCACGTCTA+TGG 0.322087 6_4:+21754709 Msa0982110:CDS
TATAATTCACTTTGACAATA+GGG 0.337928 6_4:-21751304 None:intergenic
TTATAATTCACTTTGACAAT+AGG 0.340396 6_4:-21751305 None:intergenic
GCTCCGTGCTTATAACTTAC+AGG 0.341829 6_4:+21754061 Msa0982110:CDS
GCTGATCTTACCATACTTGC+TGG 0.343338 6_4:+21752565 Msa0982110:CDS
CAGGGGTGTCAGCTCAAGAT+AGG 0.349843 6_4:+21752413 Msa0982110:CDS
TCTTACCATACTTGCTGGTT+TGG 0.362027 6_4:+21752570 Msa0982110:CDS
TGGCTCCAAACCAGCAAGTA+TGG 0.366834 6_4:-21752575 None:intergenic
TGAAGAAGATCTGGATAGAT+TGG 0.371141 6_4:+21751860 Msa0982110:CDS
TACTATAAAAGCCATAGCTT+CGG 0.376535 6_4:-21751802 None:intergenic
CCTGTTGACTCTAGGGAATA+TGG 0.376635 6_4:+21754128 Msa0982110:CDS
TAGATTGGAGCTTCCTTTGA+TGG 0.382995 6_4:+21751875 Msa0982110:CDS
TTCTTTGGTGTCTGTTACAG+AGG 0.383488 6_4:+21755045 Msa0982110:three_prime_UTR
GTATGATATATGTAGGTAAT+AGG 0.383546 6_4:-21754818 None:intergenic
CTAATTAAGGAACAGTCTAA+TGG 0.392390 6_4:+21751464 Msa0982110:CDS
TTCCTTAATTAGAATAGATT+CGG 0.393536 6_4:-21751453 None:intergenic
TCCTTTGATGGTGGACAGTA+AGG 0.396490 6_4:+21751887 Msa0982110:CDS
GAAGAATCAAATGTTGTTGC+TGG 0.405283 6_4:+21754772 Msa0982110:CDS
CAGTCAAACCATAGCCTTTG+AGG 0.405833 6_4:-21754618 None:intergenic
TTTACCAATGATAATCTCAT+TGG 0.405993 6_4:-21751414 None:intergenic
GGACTACAATGACTATGATT+TGG 0.413404 6_4:+21751532 Msa0982110:CDS
ATTTGATTCTTCAACAGTAT+TGG 0.413785 6_4:-21754761 None:intergenic
TTTCAGATACTGAGGGATCT+AGG 0.416479 6_4:+21754547 Msa0982110:intron
CTCTAAGTATCTCTTGTTCT+CGG 0.416752 6_4:-21754677 None:intergenic
GTACACTCAGAGTGTCTAAC+TGG 0.418207 6_4:+21753903 Msa0982110:CDS
CGAATGTCTTCGATGGCCTC+AGG 0.419623 6_4:-21751584 None:intergenic
TGAGCATATTGCAATGGTTA+AGG 0.423972 6_4:+21753739 Msa0982110:CDS
GTTAAATCTGCATTGACATC+TGG 0.433737 6_4:+21751359 Msa0982110:CDS
GTGCCTTCTTGAAGAAAATC+AGG 0.434371 6_4:-21754937 None:intergenic
ACAAAATATGTTGGCCTCAA+AGG 0.435305 6_4:+21754604 Msa0982110:CDS
TTTATAGTAAAGCATGGAAC+TGG 0.441142 6_4:+21751816 Msa0982110:CDS
CGAAAACCTGAAAATTGTAT+TGG 0.441857 6_4:-21755019 None:intergenic
CTGATTTCCACAGTCACATC+TGG 0.442660 6_4:-21753943 None:intergenic
TGGGATTGCCTGTTGACTCT+AGG 0.445337 6_4:+21754120 Msa0982110:CDS
AAGTATGAATGAAGAAGATC+TGG 0.451224 6_4:+21751851 Msa0982110:CDS
AACACCAATGAGATTATCAT+TGG 0.453021 6_4:+21751410 Msa0982110:CDS
ACTATAAAAGCCATAGCTTC+GGG 0.455105 6_4:-21751801 None:intergenic
CCTGAAAATTGTATTGGTAA+TGG 0.458617 6_4:-21755013 None:intergenic
AAGAAAGAGAGATCAATTAG+TGG 0.461335 6_4:+21753637 Msa0982110:CDS
TTGGCAAATTCGCGGAGCTT+AGG 0.465644 6_4:-21752649 None:intergenic
AAACGAAGGAGACTTGATAA+TGG 0.466614 6_4:+21751761 Msa0982110:CDS
CAACTCCTCATTGGCTTCTA+CGG 0.466646 6_4:-21754099 None:intergenic
TATCTATCGCTGACTTGATA+AGG 0.467918 6_4:+21752692 Msa0982110:CDS
CAAAACTATTCATATTCAAA+TGG 0.469637 6_4:+21750759 Msa0982110:exon
GGGATTGCCTGTTGACTCTA+GGG 0.469934 6_4:+21754121 Msa0982110:CDS
AGGCAATCCCAACTCCTCAT+TGG 0.470707 6_4:-21754108 None:intergenic
ATGGCCTTATCTATAATGAT+TGG 0.471805 6_4:-21754994 None:intergenic
CCATATTCCCTAGAGTCAAC+AGG 0.477453 6_4:-21754128 None:intergenic
GAAGGAAGAGGTATTGGATT+GGG 0.477603 6_4:+21754032 Msa0982110:CDS
CGTAGAAGCCAATGAGGAGT+TGG 0.481823 6_4:+21754100 Msa0982110:CDS
GGAACACCGGCATCAGACTC+AGG 0.482276 6_4:+21751485 Msa0982110:CDS
GAGACCAAACGTGTGAAAAT+GGG 0.484788 6_4:+21754697 Msa0982110:CDS
ATTGGTAAAGATCTCGTTGT+TGG 0.488140 6_4:+21751428 Msa0982110:CDS
ATTAATCATGCAGATGGTAG+TGG 0.489759 6_4:+21751716 Msa0982110:intron
ATGGTTTGACTGTTTCTGGT+AGG 0.495319 6_4:+21754629 Msa0982110:CDS
CAGATTGAGGCTGCCGGTAG+GGG 0.496302 6_4:+21753984 Msa0982110:CDS
TATGTTGGCCTCAAAGGCTA+TGG 0.502238 6_4:+21754610 Msa0982110:CDS
GGACATGAAGGAAGAGGTAT+TGG 0.502608 6_4:+21754026 Msa0982110:CDS
GCTAAACATGGTACCACCAC+AGG 0.505229 6_4:+21752394 Msa0982110:CDS
AGTGCCAATCATTATAGATA+AGG 0.507591 6_4:+21754990 Msa0982110:three_prime_UTR
ACAGATTGAGGCTGCCGGTA+GGG 0.509746 6_4:+21753983 Msa0982110:CDS
TCCTTGACGAATGTCTTCGA+TGG 0.509883 6_4:-21751591 None:intergenic
ATTGGCAACGCCCGAAGCTA+TGG 0.511506 6_4:+21751791 Msa0982110:CDS
GTTATAAGTCTCTGTTAGAC+GGG 0.512110 6_4:+21753714 Msa0982110:CDS
ACGTGATAAGAGTTAACAAC+GGG 0.514164 6_4:-21754654 None:intergenic
AAAGCAGCATTGTGAGTTGA+GGG 0.515216 6_4:-21751332 None:intergenic
GCTTATAACTTACAGGATGA+TGG 0.518705 6_4:+21754068 Msa0982110:CDS
AATAATTTGAAGTGATTGGA+TGG 0.519843 6_4:-21751272 None:intergenic
CTCTATGAAAGAGGGAAAGT+GGG 0.520646 6_4:-21750566 None:intergenic
TAAAGTCGTCTCTATGAAAG+AGG 0.521422 6_4:-21750575 None:intergenic
TATATCATACACAACAAAAG+AGG 0.522768 6_4:+21754831 Msa0982110:three_prime_UTR
GTAATTTGACAGGGTGACAT+TGG 0.522822 6_4:+21753855 Msa0982110:intron
TCTCTATGAAAGAGGGAAAG+TGG 0.528459 6_4:-21750567 None:intergenic
AACAATCCAACAAAATATGT+TGG 0.531217 6_4:+21754595 Msa0982110:CDS
GCCTTACTGTCCACCATCAA+AGG 0.531971 6_4:-21751888 None:intergenic
ACTTGCAATGGAACAGATTG+AGG 0.536805 6_4:+21753971 Msa0982110:CDS
GGTGGTGTCTTGAAGAGAGC+TGG 0.536885 6_4:+21752526 Msa0982110:CDS
TGAAGGAAGAGGTATTGGAT+TGG 0.539165 6_4:+21754031 Msa0982110:CDS
GTAGAAGCCAATGAGGAGTT+GGG 0.539865 6_4:+21754101 Msa0982110:CDS
GGTATCCCTGAGTCTGATGC+CGG 0.539984 6_4:-21751491 None:intergenic
AGATAGGGCAACTACAGTAT+TGG 0.540764 6_4:+21752429 Msa0982110:CDS
AAATCAGCTTGCACTTGCAA+TGG 0.545459 6_4:+21753959 Msa0982110:CDS
TTGTTGTGTATGATATATGT+AGG 0.545690 6_4:-21754825 None:intergenic
GGAATATGGCATAGGCGCAC+AGG 0.546667 6_4:+21754142 Msa0982110:CDS
TTATTGGAATATAATCTACC+AGG 0.552249 6_4:+21755086 Msa0982110:three_prime_UTR
AGTTATAAGCACGGAGCTTG+TGG 0.552273 6_4:-21754055 None:intergenic
TGACAGGGTGACATTGGAGA+TGG 0.555270 6_4:+21753861 Msa0982110:intron
ATCTCACACAGAACTGCCAC+TGG 0.558496 6_4:-21752595 None:intergenic
ACTTGCTGGTTTGGAGCCAG+TGG 0.560907 6_4:+21752579 Msa0982110:CDS
TGTTATAAGTCTCTGTTAGA+CGG 0.563415 6_4:+21753713 Msa0982110:CDS
TGTAGATGATGACGGTTCCA+TGG 0.564406 6_4:+21752618 Msa0982110:CDS
AAATCTGCATTGACATCTGG+AGG 0.565898 6_4:+21751362 Msa0982110:CDS
AGGGGTGTCAGCTCAAGATA+GGG 0.566474 6_4:+21752414 Msa0982110:CDS
GCAAGAATACCTACAATGTG+GGG 0.568021 6_4:+21753674 Msa0982110:CDS
TTATAACAGTATGATGTGAA+TGG 0.568571 6_4:-21753698 None:intergenic
TTTAGTGGGAAAATATGGCC+TGG 0.569452 6_4:-21752493 None:intergenic
TGCAAGAATACCTACAATGT+GGG 0.572772 6_4:+21753673 Msa0982110:CDS
ATTGGAGCTTCCTTTGATGG+TGG 0.572830 6_4:+21751878 Msa0982110:CDS
CCGTCTGATTTCAACCGACC+AGG 0.574350 6_4:+21752475 Msa0982110:CDS
ATATACAAGTACTCCCCTAC+CGG 0.574412 6_4:-21753997 None:intergenic
GATTTGGACATCCCTGCAGA+AGG 0.574646 6_4:+21751548 Msa0982110:CDS
TCTCACGCTTGGCAAATTCG+CGG 0.575937 6_4:-21752657 None:intergenic
TGGAGAAGATGTTCTTGTGA+GGG 0.578569 6_4:+21753881 Msa0982110:CDS
CGGGATTGAGCATATTGCAA+TGG 0.579779 6_4:+21753733 Msa0982110:CDS
TACCGCATTCACTGTGACCG+TGG 0.580033 6_4:+21751929 Msa0982110:CDS
CACCTCTCCTCTCTTGTCCA+CGG 0.580545 6_4:+21750812 Msa0982110:CDS
GAATGTCTTCGATGGCCTCA+GGG 0.580551 6_4:-21751583 None:intergenic
AAAAGCAGCATTGTGAGTTG+AGG 0.581051 6_4:-21751333 None:intergenic
GAGTTGAATCTCTAGATGCA+AGG 0.584364 6_4:-21752453 None:intergenic
ATCTGCATTGACATCTGGAG+GGG 0.586176 6_4:+21751364 Msa0982110:CDS
GAAGTTACCGTGGACAAGAG+AGG 0.590332 6_4:-21750819 None:intergenic
CGAAGACATTCGTCAAGGAA+AGG 0.592026 6_4:+21751595 Msa0982110:CDS
GTGGGAAAATATGGCCTGGT+CGG 0.598146 6_4:-21752489 None:intergenic
GTATATCTACGCGGACATGA+AGG 0.601774 6_4:+21754014 Msa0982110:CDS
ATGGAACAGATTGAGGCTGC+CGG 0.604204 6_4:+21753978 Msa0982110:CDS
TTCCCACTAAAATACAGGGA+TGG 0.605130 6_4:+21752505 Msa0982110:CDS
AATGGGCCACGTCTATGGCA+TGG 0.606179 6_4:+21754714 Msa0982110:CDS
CTACGCGGACATGAAGGAAG+AGG 0.608496 6_4:+21754020 Msa0982110:CDS
ATGGAACTTAACAACGGCAA+TGG 0.608599 6_4:+21754733 Msa0982110:CDS
CTGCAAGAATACCTACAATG+TGG 0.611887 6_4:+21753672 Msa0982110:CDS
CCTGGTCGGTTGAAATCAGA+CGG 0.613895 6_4:-21752475 None:intergenic
ATGGAGAAGATGTTCTTGTG+AGG 0.618966 6_4:+21753880 Msa0982110:CDS
AGTTGAATCTCTAGATGCAA+GGG 0.619240 6_4:-21752452 None:intergenic
GAGCTTAGGTAATCTAGCCA+TGG 0.622161 6_4:-21752635 None:intergenic
CTAAACATGGTACCACCACA+GGG 0.625510 6_4:+21752395 Msa0982110:CDS
GACTCTAGGGAATATGGCAT+AGG 0.625669 6_4:+21754134 Msa0982110:CDS
CCACTAAAATACAGGGATGG+TGG 0.628481 6_4:+21752508 Msa0982110:CDS
GAACACCGGCATCAGACTCA+GGG 0.628940 6_4:+21751486 Msa0982110:CDS
AAAGTCGTCTCTATGAAAGA+GGG 0.633155 6_4:-21750574 None:intergenic
AACAGATTGAGGCTGCCGGT+AGG 0.636736 6_4:+21753982 Msa0982110:CDS
TTGAGCTGACACCCCTGTGG+TGG 0.636935 6_4:-21752407 None:intergenic
GCTACAATAACTCATGTCAG+TGG 0.640830 6_4:+21755125 Msa0982110:three_prime_UTR
AGATTATATTCCAATAAGCA+AGG 0.641533 6_4:-21755080 None:intergenic
AATCTGCATTGACATCTGGA+GGG 0.646026 6_4:+21751363 Msa0982110:CDS
TATTTGCAGGATGCTAAACA+TGG 0.653209 6_4:+21752382 Msa0982110:intron
CATCCTGTAAGTTATAAGCA+CGG 0.654892 6_4:-21754064 None:intergenic
TCTGCATTGACATCTGGAGG+GGG 0.656751 6_4:+21751365 Msa0982110:CDS
TACCACGGTCACAGTGAATG+CGG 0.656958 6_4:-21751931 None:intergenic
TACCGTGGACAAGAGAGGAG+AGG 0.658759 6_4:-21750814 None:intergenic
TGTGAGATTGTAGATGATGA+CGG 0.659733 6_4:+21752610 Msa0982110:CDS
GCCATCGAAGACATTCGTCA+AGG 0.667650 6_4:+21751590 Msa0982110:CDS
GGAACAGTCTAATGGAACAC+CGG 0.671680 6_4:+21751472 Msa0982110:CDS
GATGAAGATAGAGAAAACGA+AGG 0.672267 6_4:+21751747 Msa0982110:CDS
CGATACCGTAGAAGCCAATG+AGG 0.672536 6_4:+21754094 Msa0982110:CDS
CAAGAATACCTACAATGTGG+GGG 0.672554 6_4:+21753675 Msa0982110:CDS
ATGAAAGAGGGAAAGTGGGG+AGG 0.673501 6_4:-21750562 None:intergenic
TGGACAAGAGAGGAGAGGTG+AGG 0.674160 6_4:-21750809 None:intergenic
TAAGTTCCATGCCATAGACG+TGG 0.678127 6_4:-21754720 None:intergenic
TCTATGAAAGAGGGAAAGTG+GGG 0.691721 6_4:-21750565 None:intergenic
ATCTTGAGCTGACACCCCTG+TGG 0.696438 6_4:-21752410 None:intergenic
GACGTGATAAGAGTTAACAA+CGG 0.711055 6_4:-21754655 None:intergenic
TATGGCATGGAACTTAACAA+CGG 0.722153 6_4:+21754727 Msa0982110:CDS
GGATCTGCCAGATGTGACTG+TGG 0.728800 6_4:+21753936 Msa0982110:CDS
CAGGAAGTAACGAAGAAACG+CGG 0.760732 6_4:-21750537 None:intergenic
GGAGTACTTGTATATCTACG+CGG 0.793030 6_4:+21754005 Msa0982110:CDS
TAAACATGGTACCACCACAG+GGG 0.794302 6_4:+21752396 Msa0982110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTGTTGAAATTAAA+TGG + chr6_4:21752243-21752262 Msa0982110:intron 10.0%
!! TCTTAATATTTGCATATTTA+TGG + chr6_4:21752751-21752770 Msa0982110:intron 15.0%
!!! AATGGAATTTTTATATTTTC+TGG + chr6_4:21753018-21753037 Msa0982110:intron 15.0%
!! TTATTGTAAAAAATCCTTTA+TGG - chr6_4:21754194-21754213 None:intergenic 15.0%
!!! TGTTTATTAAAGAGATATTT+TGG + chr6_4:21754304-21754323 Msa0982110:intron 15.0%
!!! ATTTTAACTGTTTAAATACA+TGG + chr6_4:21754462-21754481 Msa0982110:intron 15.0%
!!! ATTAATTTATTGTCACTTTT+TGG - chr6_4:21754884-21754903 None:intergenic 15.0%
!!! AGTTAATTTGGTCAAATTAA+AGG - chr6_4:21750725-21750744 None:intergenic 20.0%
!! CAAAACTATTCATATTCAAA+TGG + chr6_4:21750759-21750778 Msa0982110:exon 20.0%
!! TGGATCATGAAAAAATATAT+GGG - chr6_4:21750890-21750909 None:intergenic 20.0%
!!! ATTGAATAATTTGAAGTGAT+TGG - chr6_4:21751279-21751298 None:intergenic 20.0%
!! TATAATTCACTTTGACAATA+GGG - chr6_4:21751307-21751326 None:intergenic 20.0%
!! TTATAATTCACTTTGACAAT+AGG - chr6_4:21751308-21751327 None:intergenic 20.0%
!! TTCCTTAATTAGAATAGATT+CGG - chr6_4:21751456-21751475 None:intergenic 20.0%
!!! ATTAAATGGTTTTCAAATCA+AGG + chr6_4:21752257-21752276 Msa0982110:intron 20.0%
!!! ACAATTTAAAATGTATTTGC+AGG + chr6_4:21752369-21752388 Msa0982110:intron 20.0%
!! TTGATATCTCACAATATATA+TGG + chr6_4:21752851-21752870 Msa0982110:intron 20.0%
!! TAAAAAAAACTCGTATTCAA+TGG + chr6_4:21753064-21753083 Msa0982110:intron 20.0%
!! AATATATTAGAATTGCTCAA+TGG + chr6_4:21754166-21754185 Msa0982110:intron 20.0%
!!! TTTTACAATAACATTTTGAG+AGG + chr6_4:21754203-21754222 Msa0982110:intron 20.0%
! TGAACTAGAAGAAGTTAATT+TGG - chr6_4:21750737-21750756 None:intergenic 25.0%
! GAAAAAATATATGGGGAAAA+TGG - chr6_4:21750882-21750901 None:intergenic 25.0%
! GGATCATGAAAAAATATATG+GGG - chr6_4:21750889-21750908 None:intergenic 25.0%
! GTGGATCATGAAAAAATATA+TGG - chr6_4:21750891-21750910 None:intergenic 25.0%
! TATTGTATTGAGAAAAGAAG+TGG - chr6_4:21750910-21750929 None:intergenic 25.0%
! CGTATCATATCATATGATAA+AGG - chr6_4:21750933-21750952 None:intergenic 25.0%
! TTATCATATGATATGATACG+TGG + chr6_4:21750933-21750952 Msa0982110:intron 25.0%
!!! AAATCTGTTATGTTTTGAAC+TGG + chr6_4:21751146-21751165 Msa0982110:intron 25.0%
!! AATTTTCTGTCACTCTTTTA+AGG + chr6_4:21751212-21751231 Msa0982110:intron 25.0%
! TGAAAAACAGATCAAATCAA+AGG - chr6_4:21751245-21751264 None:intergenic 25.0%
!!! TTTGATCTGTTTTTCAATGT+AGG + chr6_4:21751249-21751268 Msa0982110:intron 25.0%
!! AATAATTTGAAGTGATTGGA+TGG - chr6_4:21751275-21751294 None:intergenic 25.0%
!!! ATAATCTCATTGGTGTTTTT+CGG - chr6_4:21751407-21751426 None:intergenic 25.0%
! TTTACCAATGATAATCTCAT+TGG - chr6_4:21751417-21751436 None:intergenic 25.0%
! AACAAAATCTATCATGATCT+TGG - chr6_4:21751695-21751714 None:intergenic 25.0%
! TTGTTTATTAATCATGCAGA+TGG + chr6_4:21751710-21751729 Msa0982110:intron 25.0%
! TTACAATATCTCTTTGACTA+AGG + chr6_4:21751996-21752015 Msa0982110:intron 25.0%
! ACTAAGGAAATGTTGTTAAA+TGG + chr6_4:21752012-21752031 Msa0982110:intron 25.0%
! TAGAAAATGTTGTCAATAAG+AGG + chr6_4:21752087-21752106 Msa0982110:intron 25.0%
! TTAATCTGTTATGCTATTGA+AGG + chr6_4:21752293-21752312 Msa0982110:intron 25.0%
!!! AAGGAATTTTGTTTTGATGT+GGG + chr6_4:21752312-21752331 Msa0982110:intron 25.0%
!!! TGTATTTTAGTGGGAAAATA+TGG - chr6_4:21752501-21752520 None:intergenic 25.0%
!! ATATTTTCCCACTAAAATAC+AGG + chr6_4:21752500-21752519 Msa0982110:CDS 25.0%
!! TATTTTCCCACTAAAATACA+GGG + chr6_4:21752501-21752520 Msa0982110:CDS 25.0%
! ATTTAGTATGTTGCATATGT+TGG - chr6_4:21752828-21752847 None:intergenic 25.0%
! ACTAAATGATTGAACTAACT+CGG + chr6_4:21752886-21752905 Msa0982110:intron 25.0%
! TATAAAAATTCCATTCAGTG+AGG - chr6_4:21753013-21753032 None:intergenic 25.0%
!!! TTAACTTTAGGATCCAAATA+GGG + chr6_4:21753122-21753141 Msa0982110:intron 25.0%
!! ATAAAATGAAGGAACACTTT+TGG + chr6_4:21753148-21753167 Msa0982110:intron 25.0%
!! TACTGAACTTACTATTTTGT+TGG - chr6_4:21753280-21753299 None:intergenic 25.0%
!!! TTTATAAGTCTCGTTTTTCA+AGG + chr6_4:21753535-21753554 Msa0982110:intron 25.0%
! ACAAGGAGATTAAAACTTAT+TGG + chr6_4:21753600-21753619 Msa0982110:intron 25.0%
! TTATAACAGTATGATGTGAA+TGG - chr6_4:21753701-21753720 None:intergenic 25.0%
! TTGACTATTTGTAATTTGAC+AGG + chr6_4:21753845-21753864 Msa0982110:intron 25.0%
! TGACTATTTGTAATTTGACA+GGG + chr6_4:21753846-21753865 Msa0982110:intron 25.0%
! ACAATGTCAATTTAGTCATT+CGG - chr6_4:21754330-21754349 None:intergenic 25.0%
! ATTGACATTGTTCGATTAAA+TGG + chr6_4:21754339-21754358 Msa0982110:intron 25.0%
! AACAATCCAACAAAATATGT+TGG + chr6_4:21754595-21754614 Msa0982110:CDS 25.0%
! ATTTGATTCTTCAACAGTAT+TGG - chr6_4:21754764-21754783 None:intergenic 25.0%
! GTATGATATATGTAGGTAAT+AGG - chr6_4:21754821-21754840 None:intergenic 25.0%
! TTGTTGTGTATGATATATGT+AGG - chr6_4:21754828-21754847 None:intergenic 25.0%
! TATATCATACACAACAAAAG+AGG + chr6_4:21754831-21754850 Msa0982110:three_prime_UTR 25.0%
! AGATTATATTCCAATAAGCA+AGG - chr6_4:21755083-21755102 None:intergenic 25.0%
! TTATTGGAATATAATCTACC+AGG + chr6_4:21755086-21755105 Msa0982110:three_prime_UTR 25.0%
!!! TGTTGTTGTTGTTGTTGTTT+TGG - chr6_4:21750664-21750683 None:intergenic 30.0%
TTGAATGTAATCACATGTGT+CGG - chr6_4:21751095-21751114 None:intergenic 30.0%
!!! CTCGTTGCAGTTTTAAATTT+TGG + chr6_4:21751189-21751208 Msa0982110:intron 30.0%
AACACCAATGAGATTATCAT+TGG + chr6_4:21751410-21751429 Msa0982110:CDS 30.0%
TGCCGAATCTATTCTAATTA+AGG + chr6_4:21751451-21751470 Msa0982110:CDS 30.0%
CTAATTAAGGAACAGTCTAA+TGG + chr6_4:21751464-21751483 Msa0982110:CDS 30.0%
TACTATAAAAGCCATAGCTT+CGG - chr6_4:21751805-21751824 None:intergenic 30.0%
! ATGGCTTTTATAGTAAAGCA+TGG + chr6_4:21751810-21751829 Msa0982110:CDS 30.0%
TTTATAGTAAAGCATGGAAC+TGG + chr6_4:21751816-21751835 Msa0982110:CDS 30.0%
AAGTATGAATGAAGAAGATC+TGG + chr6_4:21751851-21751870 Msa0982110:CDS 30.0%
ACGAATAGTAATACATACCA+CGG - chr6_4:21751949-21751968 None:intergenic 30.0%
TAATTGCATCTATACACATC+TGG + chr6_4:21751968-21751987 Msa0982110:intron 30.0%
AAGGAAATGTTGTTAAATGG+CGG + chr6_4:21752015-21752034 Msa0982110:intron 30.0%
!!! GAAGGAATTTTGTTTTGATG+TGG + chr6_4:21752311-21752330 Msa0982110:intron 30.0%
!!! ATTTTGTTTTGATGTGGGTT+AGG + chr6_4:21752317-21752336 Msa0982110:intron 30.0%
! AATTTTCAAATTCTCACGCT+TGG - chr6_4:21752671-21752690 None:intergenic 30.0%
AATCATTTAGTCACGATTCA+AGG - chr6_4:21752877-21752896 None:intergenic 30.0%
TTTGTTAAAACCTCACTGAA+TGG + chr6_4:21753000-21753019 Msa0982110:intron 30.0%
TCAATGGTTCTCATAGAAAA+TGG + chr6_4:21753080-21753099 Msa0982110:intron 30.0%
CAATGGTTCTCATAGAAAAT+GGG + chr6_4:21753081-21753100 Msa0982110:intron 30.0%
AATGGTTCTCATAGAAAATG+GGG + chr6_4:21753082-21753101 Msa0982110:intron 30.0%
GAGAGAAAGATGTTAACTTT+AGG + chr6_4:21753110-21753129 Msa0982110:intron 30.0%
!! GTTAACTTTAGGATCCAAAT+AGG + chr6_4:21753121-21753140 Msa0982110:intron 30.0%
! TTCATTTTATCCACCCTATT+TGG - chr6_4:21753138-21753157 None:intergenic 30.0%
AAATAGGGTGGATAAAATGA+AGG + chr6_4:21753137-21753156 Msa0982110:intron 30.0%
ACTATAGTAATGTATCACTC+AGG + chr6_4:21753179-21753198 Msa0982110:intron 30.0%
AAGTCATTAGAGCGAAAATT+GGG + chr6_4:21753364-21753383 Msa0982110:intron 30.0%
! GATACTTCTTGTTGCTTATT+TGG + chr6_4:21753572-21753591 Msa0982110:intron 30.0%
TTGCTTATTTGGTCATAACA+AGG + chr6_4:21753583-21753602 Msa0982110:intron 30.0%
AAGAAAGAGAGATCAATTAG+TGG + chr6_4:21753637-21753656 Msa0982110:CDS 30.0%
TGTTATAAGTCTCTGTTAGA+CGG + chr6_4:21753713-21753732 Msa0982110:CDS 30.0%
TGTATATAATACAGTTTCCG+TGG + chr6_4:21753775-21753794 Msa0982110:intron 30.0%
! CACTAAGTGTTGCAAAATAT+AGG - chr6_4:21753806-21753825 None:intergenic 30.0%
! TATTTTGCAACACTTAGTGA+TGG + chr6_4:21753807-21753826 Msa0982110:intron 30.0%
! ATTTTGCAACACTTAGTGAT+GGG + chr6_4:21753808-21753827 Msa0982110:intron 30.0%
TTCAGTCATTGAAACTGTAA+GGG - chr6_4:21754405-21754424 None:intergenic 30.0%
TTTCAGTCATTGAAACTGTA+AGG - chr6_4:21754406-21754425 None:intergenic 30.0%
TAATAGGTAAAAAGAAGGCA+TGG - chr6_4:21754805-21754824 None:intergenic 30.0%
GTAGGTAATAGGTAAAAAGA+AGG - chr6_4:21754810-21754829 None:intergenic 30.0%
AGTGCCAATCATTATAGATA+AGG + chr6_4:21754990-21755009 Msa0982110:three_prime_UTR 30.0%
!! ATGGCCTTATCTATAATGAT+TGG - chr6_4:21754997-21755016 None:intergenic 30.0%
! CCTGAAAATTGTATTGGTAA+TGG - chr6_4:21755016-21755035 None:intergenic 30.0%
! CCATTACCAATACAATTTTC+AGG + chr6_4:21755013-21755032 Msa0982110:three_prime_UTR 30.0%
CGAAAACCTGAAAATTGTAT+TGG - chr6_4:21755022-21755041 None:intergenic 30.0%
CATTGTATTACCTTGCTTAT+TGG + chr6_4:21755070-21755089 Msa0982110:three_prime_UTR 30.0%
GCAAAAATAATGAAGAAACC+TGG - chr6_4:21755107-21755126 None:intergenic 30.0%
AAAGTCGTCTCTATGAAAGA+GGG - chr6_4:21750577-21750596 None:intergenic 35.0%
TAAAGTCGTCTCTATGAAAG+AGG - chr6_4:21750578-21750597 None:intergenic 35.0%
TGGTTTGATGAGATTAACAG+TGG - chr6_4:21750862-21750881 None:intergenic 35.0%
CTGTGTGTGTTAACTAACAA+TGG - chr6_4:21750965-21750984 None:intergenic 35.0%
! GTTAAATCTGCATTGACATC+TGG + chr6_4:21751359-21751378 Msa0982110:CDS 35.0%
!! TGTTTTTCGGATAGGAAAGT+AGG - chr6_4:21751394-21751413 None:intergenic 35.0%
ATTGGTAAAGATCTCGTTGT+TGG + chr6_4:21751428-21751447 Msa0982110:CDS 35.0%
GGACTACAATGACTATGATT+TGG + chr6_4:21751532-21751551 Msa0982110:CDS 35.0%
TAGAAGAAAAACCTTCTGCA+GGG - chr6_4:21751562-21751581 None:intergenic 35.0%
ATAGAAGAAAAACCTTCTGC+AGG - chr6_4:21751563-21751582 None:intergenic 35.0%
ATTAATCATGCAGATGGTAG+TGG + chr6_4:21751716-21751735 Msa0982110:intron 35.0%
GATGAAGATAGAGAAAACGA+AGG + chr6_4:21751747-21751766 Msa0982110:CDS 35.0%
AAACGAAGGAGACTTGATAA+TGG + chr6_4:21751761-21751780 Msa0982110:CDS 35.0%
ACTATAAAAGCCATAGCTTC+GGG - chr6_4:21751804-21751823 None:intergenic 35.0%
TGAAGAAGATCTGGATAGAT+TGG + chr6_4:21751860-21751879 Msa0982110:CDS 35.0%
TATTTGCAGGATGCTAAACA+TGG + chr6_4:21752382-21752401 Msa0982110:intron 35.0%
AGTTGAATCTCTAGATGCAA+GGG - chr6_4:21752455-21752474 None:intergenic 35.0%
TGTGAGATTGTAGATGATGA+CGG + chr6_4:21752610-21752629 Msa0982110:CDS 35.0%
!! TATCTATCGCTGACTTGATA+AGG + chr6_4:21752692-21752711 Msa0982110:CDS 35.0%
TTGAACTAACTCGGACTTTA+TGG + chr6_4:21752895-21752914 Msa0982110:intron 35.0%
! GTTCTTAATTTTGTCTGACG+AGG + chr6_4:21752917-21752936 Msa0982110:intron 35.0%
TGTTGTATGAGACTGTATGT+TGG + chr6_4:21753243-21753262 Msa0982110:intron 35.0%
ACACAAGACAAGACATAATC+AGG + chr6_4:21753337-21753356 Msa0982110:intron 35.0%
CAAGTCATTAGAGCGAAAAT+TGG + chr6_4:21753363-21753382 Msa0982110:intron 35.0%
AGTCATTAGAGCGAAAATTG+GGG + chr6_4:21753365-21753384 Msa0982110:intron 35.0%
!! TTTTCAAGGTTTTTGCTGTC+TGG + chr6_4:21753549-21753568 Msa0982110:intron 35.0%
!! TTTCAAGGTTTTTGCTGTCT+GGG + chr6_4:21753550-21753569 Msa0982110:intron 35.0%
TGCAAGAATACCTACAATGT+GGG + chr6_4:21753673-21753692 Msa0982110:CDS 35.0%
GTTATAAGTCTCTGTTAGAC+GGG + chr6_4:21753714-21753733 Msa0982110:CDS 35.0%
TGAGCATATTGCAATGGTTA+AGG + chr6_4:21753739-21753758 Msa0982110:CDS 35.0%
GCAAAATATAGGTAGTTCCA+CGG - chr6_4:21753795-21753814 None:intergenic 35.0%
!!! TTAGTGATGGGTTTTTGACA+AGG + chr6_4:21753820-21753839 Msa0982110:intron 35.0%
TGTCTAACTGGAGACATATT+TGG + chr6_4:21753915-21753934 Msa0982110:CDS 35.0%
CATCCTGTAAGTTATAAGCA+CGG - chr6_4:21754067-21754086 None:intergenic 35.0%
GCTTATAACTTACAGGATGA+TGG + chr6_4:21754068-21754087 Msa0982110:CDS 35.0%
ATTGCTCAATGGTTCCATAA+AGG + chr6_4:21754177-21754196 Msa0982110:intron 35.0%
ATGGAAAGTTATCACAGACA+TGG + chr6_4:21754499-21754518 Msa0982110:intron 35.0%
GAAAAAGTAGCAACATTCCA+AGG - chr6_4:21754531-21754550 None:intergenic 35.0%
!!! TGCTACTTTTTCAGATACTG+AGG + chr6_4:21754539-21754558 Msa0982110:intron 35.0%
!!! GCTACTTTTTCAGATACTGA+GGG + chr6_4:21754540-21754559 Msa0982110:intron 35.0%
! TTGAGGCCAACATATTTTGT+TGG - chr6_4:21754604-21754623 None:intergenic 35.0%
! ACAAAATATGTTGGCCTCAA+AGG + chr6_4:21754604-21754623 Msa0982110:CDS 35.0%
ACGTGATAAGAGTTAACAAC+GGG - chr6_4:21754657-21754676 None:intergenic 35.0%
GACGTGATAAGAGTTAACAA+CGG - chr6_4:21754658-21754677 None:intergenic 35.0%
CTCTAAGTATCTCTTGTTCT+CGG - chr6_4:21754680-21754699 None:intergenic 35.0%
TATGGCATGGAACTTAACAA+CGG + chr6_4:21754727-21754746 Msa0982110:CDS 35.0%
GAAGAATCAAATGTTGTTGC+TGG + chr6_4:21754772-21754791 Msa0982110:CDS 35.0%
! TTGCCTGATTTTCTTCAAGA+AGG + chr6_4:21754934-21754953 Msa0982110:three_prime_UTR 35.0%
!! TTCAGGTTTTCGTCTTTCTT+TGG + chr6_4:21755030-21755049 Msa0982110:three_prime_UTR 35.0%
TCTATGAAAGAGGGAAAGTG+GGG - chr6_4:21750568-21750587 None:intergenic 40.0%
CTCTATGAAAGAGGGAAAGT+GGG - chr6_4:21750569-21750588 None:intergenic 40.0%
TCTCTATGAAAGAGGGAAAG+TGG - chr6_4:21750570-21750589 None:intergenic 40.0%
ACAGTGGATCATGAAAAGAG+AGG - chr6_4:21750846-21750865 None:intergenic 40.0%
! AAAGCAGCATTGTGAGTTGA+GGG - chr6_4:21751335-21751354 None:intergenic 40.0%
AAAAGCAGCATTGTGAGTTG+AGG - chr6_4:21751336-21751355 None:intergenic 40.0%
! AAATCTGCATTGACATCTGG+AGG + chr6_4:21751362-21751381 Msa0982110:CDS 40.0%
! AATCTGCATTGACATCTGGA+GGG + chr6_4:21751363-21751382 Msa0982110:CDS 40.0%
!! CTCATTGGTGTTTTTCGGAT+AGG - chr6_4:21751402-21751421 None:intergenic 40.0%
!!! ACCAAGCACTTTTTTCTCTG+CGG + chr6_4:21751511-21751530 Msa0982110:CDS 40.0%
! AGGTTTTTCTTCTATCCCTG+AGG + chr6_4:21751568-21751587 Msa0982110:CDS 40.0%
!! CTTGATAATGGCAGCAGAAT+TGG + chr6_4:21751773-21751792 Msa0982110:CDS 40.0%
TAGATTGGAGCTTCCTTTGA+TGG + chr6_4:21751875-21751894 Msa0982110:CDS 40.0%
CAATCGACAACATTGGACTA+AGG + chr6_4:21752180-21752199 Msa0982110:intron 40.0%
!! GTGGGTTAGGCATTTATTGA+TGG + chr6_4:21752330-21752349 Msa0982110:intron 40.0%
AGATAGGGCAACTACAGTAT+TGG + chr6_4:21752429-21752448 Msa0982110:CDS 40.0%
GAGTTGAATCTCTAGATGCA+AGG - chr6_4:21752456-21752475 None:intergenic 40.0%
TTTAGTGGGAAAATATGGCC+TGG - chr6_4:21752496-21752515 None:intergenic 40.0%
TTCCCACTAAAATACAGGGA+TGG + chr6_4:21752505-21752524 Msa0982110:CDS 40.0%
!!! CACCATCCCTGTATTTTAGT+GGG - chr6_4:21752510-21752529 None:intergenic 40.0%
! TCTTACCATACTTGCTGGTT+TGG + chr6_4:21752570-21752589 Msa0982110:CDS 40.0%
!! ATCGCTGACTTGATAAGGTA+TGG + chr6_4:21752697-21752716 Msa0982110:intron 40.0%
!! ACTTTAGGATCCAAATAGGG+TGG + chr6_4:21753125-21753144 Msa0982110:intron 40.0%
ATGTATCACTCAGGCTTAGA+AGG + chr6_4:21753188-21753207 Msa0982110:intron 40.0%
ACAGTCTCATACAACACTGT+AGG - chr6_4:21753239-21753258 None:intergenic 40.0%
AGTTCAGTATTCCAGAGATG+AGG + chr6_4:21753291-21753310 Msa0982110:intron 40.0%
! CTCTACCATTTTCCTACAGT+GGG - chr6_4:21753396-21753415 None:intergenic 40.0%
! ACTCTACCATTTTCCTACAG+TGG - chr6_4:21753397-21753416 None:intergenic 40.0%
GTACTTAAACCACATAAGCC+AGG - chr6_4:21753420-21753439 None:intergenic 40.0%
!! CATTCATAGAAGCACTGACT+AGG + chr6_4:21753450-21753469 Msa0982110:intron 40.0%
GAATTTGACTACCCTGTATC+TGG - chr6_4:21753484-21753503 None:intergenic 40.0%
CTGCAAGAATACCTACAATG+TGG + chr6_4:21753672-21753691 Msa0982110:CDS 40.0%
GCAAGAATACCTACAATGTG+GGG + chr6_4:21753674-21753693 Msa0982110:CDS 40.0%
CAAGAATACCTACAATGTGG+GGG + chr6_4:21753675-21753694 Msa0982110:CDS 40.0%
GTAATTTGACAGGGTGACAT+TGG + chr6_4:21753855-21753874 Msa0982110:intron 40.0%
ATGGAGAAGATGTTCTTGTG+AGG + chr6_4:21753880-21753899 Msa0982110:CDS 40.0%
TGGAGAAGATGTTCTTGTGA+GGG + chr6_4:21753881-21753900 Msa0982110:CDS 40.0%
AAATCAGCTTGCACTTGCAA+TGG + chr6_4:21753959-21753978 Msa0982110:CDS 40.0%
ACTTGCAATGGAACAGATTG+AGG + chr6_4:21753971-21753990 Msa0982110:CDS 40.0%
ATATACAAGTACTCCCCTAC+CGG - chr6_4:21754000-21754019 None:intergenic 40.0%
! GGAGTACTTGTATATCTACG+CGG + chr6_4:21754005-21754024 Msa0982110:CDS 40.0%
!! TGAAGGAAGAGGTATTGGAT+TGG + chr6_4:21754031-21754050 Msa0982110:CDS 40.0%
!! GAAGGAAGAGGTATTGGATT+GGG + chr6_4:21754032-21754051 Msa0982110:CDS 40.0%
GTCATTGAAACTGTAAGGGT+CGG - chr6_4:21754401-21754420 None:intergenic 40.0%
TTTCAGATACTGAGGGATCT+AGG + chr6_4:21754547-21754566 Msa0982110:intron 40.0%
!! ATGGTTTGACTGTTTCTGGT+AGG + chr6_4:21754629-21754648 Msa0982110:CDS 40.0%
AGAGACCAAACGTGTGAAAA+TGG + chr6_4:21754696-21754715 Msa0982110:CDS 40.0%
GAGACCAAACGTGTGAAAAT+GGG + chr6_4:21754697-21754716 Msa0982110:CDS 40.0%
ATGGAACTTAACAACGGCAA+TGG + chr6_4:21754733-21754752 Msa0982110:CDS 40.0%
GTGCCTTCTTGAAGAAAATC+AGG - chr6_4:21754940-21754959 None:intergenic 40.0%
!! TTCTTTGGTGTCTGTTACAG+AGG + chr6_4:21755045-21755064 Msa0982110:three_prime_UTR 40.0%
GCTACAATAACTCATGTCAG+TGG + chr6_4:21755125-21755144 Msa0982110:three_prime_UTR 40.0%
CAGGAAGTAACGAAGAAACG+CGG - chr6_4:21750540-21750559 None:intergenic 45.0%
AAAGAGAGGAGAAGTTACCG+TGG - chr6_4:21750832-21750851 None:intergenic 45.0%
! ATCTGCATTGACATCTGGAG+GGG + chr6_4:21751364-21751383 Msa0982110:CDS 45.0%
GGAACAGTCTAATGGAACAC+CGG + chr6_4:21751472-21751491 Msa0982110:CDS 45.0%
!! TCCGCAGAGAAAAAAGTGCT+TGG - chr6_4:21751515-21751534 None:intergenic 45.0%
TCCTTGACGAATGTCTTCGA+TGG - chr6_4:21751594-21751613 None:intergenic 45.0%
CGAAGACATTCGTCAAGGAA+AGG + chr6_4:21751595-21751614 Msa0982110:CDS 45.0%
ATTGGAGCTTCCTTTGATGG+TGG + chr6_4:21751878-21751897 Msa0982110:CDS 45.0%
!! TCCTTTGATGGTGGACAGTA+AGG + chr6_4:21751887-21751906 Msa0982110:CDS 45.0%
AATCGCGCAATCGACAACAT+TGG + chr6_4:21752173-21752192 Msa0982110:intron 45.0%
CTAAACATGGTACCACCACA+GGG + chr6_4:21752395-21752414 Msa0982110:CDS 45.0%
TAAACATGGTACCACCACAG+GGG + chr6_4:21752396-21752415 Msa0982110:CDS 45.0%
!! CCACCATCCCTGTATTTTAG+TGG - chr6_4:21752511-21752530 None:intergenic 45.0%
CCACTAAAATACAGGGATGG+TGG + chr6_4:21752508-21752527 Msa0982110:CDS 45.0%
GCTGATCTTACCATACTTGC+TGG + chr6_4:21752565-21752584 Msa0982110:CDS 45.0%
!! TGTAGATGATGACGGTTCCA+TGG + chr6_4:21752618-21752637 Msa0982110:CDS 45.0%
GAGCTTAGGTAATCTAGCCA+TGG - chr6_4:21752638-21752657 None:intergenic 45.0%
!! GCTGACTTGATAAGGTATGG+TGG + chr6_4:21752700-21752719 Msa0982110:intron 45.0%
TAACGTTCTCACCTCATCTC+TGG - chr6_4:21753305-21753324 None:intergenic 45.0%
TAGCTCCCACTGTAGGAAAA+TGG + chr6_4:21753388-21753407 Msa0982110:intron 45.0%
GTAGGAAAATGGTAGAGTCC+TGG + chr6_4:21753399-21753418 Msa0982110:intron 45.0%
!! CATAGAAGCACTGACTAGGA+AGG + chr6_4:21753454-21753473 Msa0982110:intron 45.0%
TAGGAAGGTAGACCAGATAC+AGG + chr6_4:21753469-21753488 Msa0982110:intron 45.0%
AGGAAGGTAGACCAGATACA+GGG + chr6_4:21753470-21753489 Msa0982110:intron 45.0%
CGGGATTGAGCATATTGCAA+TGG + chr6_4:21753733-21753752 Msa0982110:CDS 45.0%
! GTACACTCAGAGTGTCTAAC+TGG + chr6_4:21753903-21753922 Msa0982110:CDS 45.0%
CTGATTTCCACAGTCACATC+TGG - chr6_4:21753946-21753965 None:intergenic 45.0%
GTATATCTACGCGGACATGA+AGG + chr6_4:21754014-21754033 Msa0982110:CDS 45.0%
! GGACATGAAGGAAGAGGTAT+TGG + chr6_4:21754026-21754045 Msa0982110:CDS 45.0%
AGTTATAAGCACGGAGCTTG+TGG - chr6_4:21754058-21754077 None:intergenic 45.0%
GCTCCGTGCTTATAACTTAC+AGG + chr6_4:21754061-21754080 Msa0982110:CDS 45.0%
!! CAACTCCTCATTGGCTTCTA+CGG - chr6_4:21754102-21754121 None:intergenic 45.0%
GTAGAAGCCAATGAGGAGTT+GGG + chr6_4:21754101-21754120 Msa0982110:CDS 45.0%
CCATATTCCCTAGAGTCAAC+AGG - chr6_4:21754131-21754150 None:intergenic 45.0%
!! CCTGTTGACTCTAGGGAATA+TGG + chr6_4:21754128-21754147 Msa0982110:CDS 45.0%
! GACTCTAGGGAATATGGCAT+AGG + chr6_4:21754134-21754153 Msa0982110:CDS 45.0%
CATGGCGATCACTGTTGTTA+TGG + chr6_4:21754480-21754499 Msa0982110:intron 45.0%
CACAGACATGGCTTAAACCT+TGG + chr6_4:21754511-21754530 Msa0982110:intron 45.0%
! TATGTTGGCCTCAAAGGCTA+TGG + chr6_4:21754610-21754629 Msa0982110:CDS 45.0%
CAGTCAAACCATAGCCTTTG+AGG - chr6_4:21754621-21754640 None:intergenic 45.0%
GGCTATGGTTTGACTGTTTC+TGG + chr6_4:21754625-21754644 Msa0982110:CDS 45.0%
TAAGTTCCATGCCATAGACG+TGG - chr6_4:21754723-21754742 None:intergenic 45.0%
ATGAAAGAGGGAAAGTGGGG+AGG - chr6_4:21750565-21750584 None:intergenic 50.0%
GAAGTTACCGTGGACAAGAG+AGG - chr6_4:21750822-21750841 None:intergenic 50.0%
! TCTGCATTGACATCTGGAGG+GGG + chr6_4:21751365-21751384 Msa0982110:CDS 50.0%
GATTTGGACATCCCTGCAGA+AGG + chr6_4:21751548-21751567 Msa0982110:CDS 50.0%
GAATGTCTTCGATGGCCTCA+GGG - chr6_4:21751586-21751605 None:intergenic 50.0%
GCCATCGAAGACATTCGTCA+AGG + chr6_4:21751590-21751609 Msa0982110:CDS 50.0%
GCCTTACTGTCCACCATCAA+AGG - chr6_4:21751891-21751910 None:intergenic 50.0%
TACCACGGTCACAGTGAATG+CGG - chr6_4:21751934-21751953 None:intergenic 50.0%
! TGTTGTCGATTGCGCGATTG+CGG - chr6_4:21752172-21752191 None:intergenic 50.0%
GCTAAACATGGTACCACCAC+AGG + chr6_4:21752394-21752413 Msa0982110:CDS 50.0%
!! AGGGGTGTCAGCTCAAGATA+GGG + chr6_4:21752414-21752433 Msa0982110:CDS 50.0%
CCTGGTCGGTTGAAATCAGA+CGG - chr6_4:21752478-21752497 None:intergenic 50.0%
GTGGGAAAATATGGCCTGGT+CGG - chr6_4:21752492-21752511 None:intergenic 50.0%
TGGCTCCAAACCAGCAAGTA+TGG - chr6_4:21752578-21752597 None:intergenic 50.0%
ATCTCACACAGAACTGCCAC+TGG - chr6_4:21752598-21752617 None:intergenic 50.0%
TTGGCAAATTCGCGGAGCTT+AGG - chr6_4:21752652-21752671 None:intergenic 50.0%
TCTCACGCTTGGCAAATTCG+CGG - chr6_4:21752660-21752679 None:intergenic 50.0%
TGGTAGAGTCCTGGCTTATG+TGG + chr6_4:21753408-21753427 Msa0982110:intron 50.0%
TGACAGGGTGACATTGGAGA+TGG + chr6_4:21753861-21753880 Msa0982110:intron 50.0%
ATGGAACAGATTGAGGCTGC+CGG + chr6_4:21753978-21753997 Msa0982110:CDS 50.0%
CGATACCGTAGAAGCCAATG+AGG + chr6_4:21754094-21754113 Msa0982110:CDS 50.0%
CGTAGAAGCCAATGAGGAGT+TGG + chr6_4:21754100-21754119 Msa0982110:CDS 50.0%
AGGCAATCCCAACTCCTCAT+TGG - chr6_4:21754111-21754130 None:intergenic 50.0%
!! TGGGATTGCCTGTTGACTCT+AGG + chr6_4:21754120-21754139 Msa0982110:CDS 50.0%
!! GGGATTGCCTGTTGACTCTA+GGG + chr6_4:21754121-21754140 Msa0982110:CDS 50.0%
AAACTGTAAGGGTCGGTCTG+AGG - chr6_4:21754394-21754413 None:intergenic 50.0%
! GTGGCCCATTTTCACACGTT+TGG - chr6_4:21754704-21754723 None:intergenic 50.0%
GTGAAAATGGGCCACGTCTA+TGG + chr6_4:21754709-21754728 Msa0982110:CDS 50.0%
TGGACAAGAGAGGAGAGGTG+AGG - chr6_4:21750812-21750831 None:intergenic 55.0%
CACCTCTCCTCTCTTGTCCA+CGG + chr6_4:21750812-21750831 Msa0982110:CDS 55.0%
TACCGTGGACAAGAGAGGAG+AGG - chr6_4:21750817-21750836 None:intergenic 55.0%
GAACACCGGCATCAGACTCA+GGG + chr6_4:21751486-21751505 Msa0982110:CDS 55.0%
GGTATCCCTGAGTCTGATGC+CGG - chr6_4:21751494-21751513 None:intergenic 55.0%
CGAATGTCTTCGATGGCCTC+AGG - chr6_4:21751587-21751606 None:intergenic 55.0%
ATTGGCAACGCCCGAAGCTA+TGG + chr6_4:21751791-21751810 Msa0982110:CDS 55.0%
TACCGCATTCACTGTGACCG+TGG + chr6_4:21751929-21751948 Msa0982110:CDS 55.0%
ATCTTGAGCTGACACCCCTG+TGG - chr6_4:21752413-21752432 None:intergenic 55.0%
!! CAGGGGTGTCAGCTCAAGAT+AGG + chr6_4:21752413-21752432 Msa0982110:CDS 55.0%
CCGTCTGATTTCAACCGACC+AGG + chr6_4:21752475-21752494 Msa0982110:CDS 55.0%
GGTGGTGTCTTGAAGAGAGC+TGG + chr6_4:21752526-21752545 Msa0982110:CDS 55.0%
!! ACTTGCTGGTTTGGAGCCAG+TGG + chr6_4:21752579-21752598 Msa0982110:CDS 55.0%
ATTGGGGTAGCTCCCACTGT+AGG + chr6_4:21753381-21753400 Msa0982110:intron 55.0%
GTGAATGGCCCCCACATTGT+AGG - chr6_4:21753686-21753705 None:intergenic 55.0%
GGATCTGCCAGATGTGACTG+TGG + chr6_4:21753936-21753955 Msa0982110:CDS 55.0%
AACAGATTGAGGCTGCCGGT+AGG + chr6_4:21753982-21754001 Msa0982110:CDS 55.0%
ACAGATTGAGGCTGCCGGTA+GGG + chr6_4:21753983-21754002 Msa0982110:CDS 55.0%
CTACGCGGACATGAAGGAAG+AGG + chr6_4:21754020-21754039 Msa0982110:CDS 55.0%
GGAATATGGCATAGGCGCAC+AGG + chr6_4:21754142-21754161 Msa0982110:CDS 55.0%
AATGGGCCACGTCTATGGCA+TGG + chr6_4:21754714-21754733 Msa0982110:CDS 55.0%
GGAACACCGGCATCAGACTC+AGG + chr6_4:21751485-21751504 Msa0982110:CDS 60.0%
TTGAGCTGACACCCCTGTGG+TGG - chr6_4:21752410-21752429 None:intergenic 60.0%
CAGATTGAGGCTGCCGGTAG+GGG + chr6_4:21753984-21754003 Msa0982110:CDS 60.0%
! GAGGGAAAGTGGGGAGGTGC+AGG - chr6_4:21750559-21750578 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 21750525 21755160 21750525 ID=Msa0982110;Name=Msa0982110
chr6_4 mRNA 21750525 21755160 21750525 ID=Msa0982110-mRNA-1;Parent=Msa0982110;Name=Msa0982110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=253|1|1|1|1|1|7|359|540
chr6_4 exon 21750525 21750833 21750525 ID=Msa0982110-mRNA-1:exon:6747;Parent=Msa0982110-mRNA-1
chr6_4 exon 21751271 21751616 21751271 ID=Msa0982110-mRNA-1:exon:6748;Parent=Msa0982110-mRNA-1
chr6_4 exon 21751729 21751950 21751729 ID=Msa0982110-mRNA-1:exon:6749;Parent=Msa0982110-mRNA-1
chr6_4 exon 21752391 21752713 21752391 ID=Msa0982110-mRNA-1:exon:6750;Parent=Msa0982110-mRNA-1
chr6_4 exon 21753631 21753760 21753631 ID=Msa0982110-mRNA-1:exon:6751;Parent=Msa0982110-mRNA-1
chr6_4 exon 21753867 21754163 21753867 ID=Msa0982110-mRNA-1:exon:6752;Parent=Msa0982110-mRNA-1
chr6_4 exon 21754553 21755160 21754553 ID=Msa0982110-mRNA-1:exon:6753;Parent=Msa0982110-mRNA-1
chr6_4 five_prime_UTR 21750525 21750777 21750525 ID=Msa0982110-mRNA-1:five_prime_utr;Parent=Msa0982110-mRNA-1
chr6_4 CDS 21750778 21750833 21750778 ID=Msa0982110-mRNA-1:cds;Parent=Msa0982110-mRNA-1
chr6_4 CDS 21751271 21751616 21751271 ID=Msa0982110-mRNA-1:cds;Parent=Msa0982110-mRNA-1
chr6_4 CDS 21751729 21751950 21751729 ID=Msa0982110-mRNA-1:cds;Parent=Msa0982110-mRNA-1
chr6_4 CDS 21752391 21752713 21752391 ID=Msa0982110-mRNA-1:cds;Parent=Msa0982110-mRNA-1
chr6_4 CDS 21753631 21753760 21753631 ID=Msa0982110-mRNA-1:cds;Parent=Msa0982110-mRNA-1
chr6_4 CDS 21753867 21754163 21753867 ID=Msa0982110-mRNA-1:cds;Parent=Msa0982110-mRNA-1
chr6_4 CDS 21754553 21754801 21754553 ID=Msa0982110-mRNA-1:cds;Parent=Msa0982110-mRNA-1
chr6_4 three_prime_UTR 21754802 21755160 21754802 ID=Msa0982110-mRNA-1:three_prime_utr;Parent=Msa0982110-mRNA-1
Gene Sequence

>Msa0982110

ATGGCTACTTTGAATCTCTCTTCTTGTTCTTCCTCACCTCTCCTCTCTTGTCCACGGCCATCCAATCACTTCAAATTATTCAATGATTTCCCTATTGTCAAAGTGAATTATAAATCTCCCTCAACTCACAATGCTGCTTTTAGAGTTAAATCTGCATTGACATCTGGAGGGGGTGACCTACTTTCCTATCCGAAAAACACCAATGAGATTATCATTGGTAAAGATCTCGTTGTTGGTGCCGAATCTATTCTAATTAAGGAACAGTCTAATGGAACACCGGCATCAGACTCAGGGATACCAAGCACTTTTTTCTCTGCGGACTACAATGACTATGATTTGGACATCCCTGCAGAAGGTTTTTCTTCTATCCCTGAGGCCATCGAAGACATTCGTCAAGGAAAGATGGTAGTGGTTGTCGACGATGAAGATAGAGAAAACGAAGGAGACTTGATAATGGCAGCAGAATTGGCAACGCCCGAAGCTATGGCTTTTATAGTAAAGCATGGAACTGGCATAGTTTGTGTAAGTATGAATGAAGAAGATCTGGATAGATTGGAGCTTCCTTTGATGGTGGACAGTAAGGCTAATGCTGATAAACTTCGTACCGCATTCACTGTGACCGTGGATGCTAAACATGGTACCACCACAGGGGTGTCAGCTCAAGATAGGGCAACTACAGTATTGGCCCTTGCATCTAGAGATTCAACTCCGTCTGATTTCAACCGACCAGGCCATATTTTCCCACTAAAATACAGGGATGGTGGTGTCTTGAAGAGAGCTGGACATACAGAAGCTTCAGCTGATCTTACCATACTTGCTGGTTTGGAGCCAGTGGCAGTTCTGTGTGAGATTGTAGATGATGACGGTTCCATGGCTAGATTACCTAAGCTCCGCGAATTTGCCAAGCGTGAGAATTTGAAAATTGTATCTATCGCTGACTTGATAAGATATAGAAGAAAGAGAGATCAATTAGTGGAACGTTCTTCTGCTGCAAGAATACCTACAATGTGGGGGCCATTCACATCATACTGTTATAAGTCTCTGTTAGACGGGATTGAGCATATTGCAATGGTTAAGGGTGACATTGGAGATGGAGAAGATGTTCTTGTGAGGGTACACTCAGAGTGTCTAACTGGAGACATATTTGGATCTGCCAGATGTGACTGTGGAAATCAGCTTGCACTTGCAATGGAACAGATTGAGGCTGCCGGTAGGGGAGTACTTGTATATCTACGCGGACATGAAGGAAGAGGTATTGGATTGGGCCACAAGCTCCGTGCTTATAACTTACAGGATGATGGACGCGATACCGTAGAAGCCAATGAGGAGTTGGGATTGCCTGTTGACTCTAGGGAATATGGCATAGGCGCACAGATACTGAGGGATCTAGGCGTTAAATCTATGAAGTTGATGACAAACAATCCAACAAAATATGTTGGCCTCAAAGGCTATGGTTTGACTGTTTCTGGTAGGATCCCGTTGTTAACTCTTATCACGTCCGAGAACAAGAGATACTTAGAGACCAAACGTGTGAAAATGGGCCACGTCTATGGCATGGAACTTAACAACGGCAATGGTAAAACCAATACTGTTGAAGAATCAAATGTTGTTGCTGGCTTTTGA

Protein sequence

>Msa0982110

MATLNLSSCSSSPLLSCPRPSNHFKLFNDFPIVKVNYKSPSTHNAAFRVKSALTSGGGDLLSYPKNTNEIIIGKDLVVGAESILIKEQSNGTPASDSGIPSTFFSADYNDYDLDIPAEGFSSIPEAIEDIRQGKMVVVVDDEDRENEGDLIMAAELATPEAMAFIVKHGTGIVCVSMNEEDLDRLELPLMVDSKANADKLRTAFTVTVDAKHGTTTGVSAQDRATTVLALASRDSTPSDFNRPGHIFPLKYRDGGVLKRAGHTEASADLTILAGLEPVAVLCEIVDDDGSMARLPKLREFAKRENLKIVSIADLIRYRRKRDQLVERSSAARIPTMWGPFTSYCYKSLLDGIEHIAMVKGDIGDGEDVLVRVHSECLTGDIFGSARCDCGNQLALAMEQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVKSMKLMTNNPTKYVGLKGYGLTVSGRIPLLTLITSENKRYLETKRVKMGHVYGMELNNGNGKTNTVEESNVVAGF*