AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0194400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194400 MtrunA17_Chr2g0285061 98.904 365 4 0 1 365 1 365 0.0 733
Msa0194400 MtrunA17_Chr3g0086641 80.508 354 67 2 13 365 18 370 0.0 589
Msa0194400 MtrunA17_Chr8g0380041 71.585 366 100 3 1 365 1 363 0.0 540
Msa0194400 MtrunA17_Chr3g0077581 56.305 341 144 4 28 365 32 370 1.83e-130 378
Msa0194400 MtrunA17_Chr3g0077571 52.408 353 162 5 13 365 11 357 1.50e-125 365
Msa0194400 MtrunA17_Chr3g0131321 45.205 365 183 7 14 364 7 368 4.43e-109 324
Msa0194400 MtrunA17_Chr8g0380031 46.356 343 161 5 29 365 81 406 1.22e-104 313
Msa0194400 MtrunA17_Chr3g0085881 45.266 338 172 4 27 364 28 352 1.63e-104 311
Msa0194400 MtrunA17_Chr4g0017431 45.098 357 189 6 13 365 10 363 4.76e-104 310
Msa0194400 MtrunA17_Chr2g0284991 46.450 338 171 5 29 364 30 359 1.47e-102 307
Msa0194400 MtrunA17_Chr2g0284951 44.382 356 182 6 13 364 11 354 5.57e-102 305
Msa0194400 MtrunA17_Chr2g0284921 45.930 344 174 6 25 365 27 361 1.20e-101 304
Msa0194400 MtrunA17_Chr2g0285001 43.716 366 190 9 7 364 3 360 3.03e-96 291
Msa0194400 MtrunA17_Chr2g0284941 42.192 365 175 7 7 364 3 338 1.50e-92 281
Msa0194400 MtrunA17_Chr2g0294301 40.960 354 201 7 15 364 18 367 2.26e-87 268
Msa0194400 MtrunA17_Chr4g0068441 38.056 360 214 8 9 364 13 367 5.72e-83 256
Msa0194400 MtrunA17_Chr2g0294311 37.569 362 210 7 15 364 15 372 1.13e-78 246
Msa0194400 MtrunA17_Chr5g0434621 38.329 347 202 11 6 348 1 339 4.24e-78 244
Msa0194400 MtrunA17_Chr1g0189901 39.286 336 198 5 15 346 12 345 7.42e-76 238
Msa0194400 MtrunA17_Chr5g0396511 37.838 333 201 5 34 363 48 377 1.66e-75 238
Msa0194400 MtrunA17_Chr7g0275021 37.427 342 203 6 8 344 11 346 3.94e-73 231
Msa0194400 MtrunA17_Chr7g0274991 39.104 335 193 7 33 362 34 362 4.54e-72 229
Msa0194400 MtrunA17_Chr1g0182811 38.889 342 203 5 13 350 14 353 1.61e-70 225
Msa0194400 MtrunA17_Chr1g0189931 35.613 351 219 6 14 360 12 359 1.84e-70 224
Msa0194400 MtrunA17_Chr7g0275001 35.854 357 222 7 13 365 5 358 9.34e-70 223
Msa0194400 MtrunA17_Chr3g0099161 38.286 350 197 9 23 362 83 423 5.42e-69 223
Msa0194400 MtrunA17_Chr7g0275011 36.872 358 216 8 9 362 12 363 7.22e-69 221
Msa0194400 MtrunA17_Chr8g0374101 36.517 356 214 7 1 344 1 356 1.01e-68 220
Msa0194400 MtrunA17_Chr3g0099151 37.234 376 212 10 5 365 56 422 2.00e-68 221
Msa0194400 MtrunA17_Chr5g0444401 37.396 361 206 11 13 362 8 359 4.70e-68 218
Msa0194400 MtrunA17_Chr1g0156931 35.806 310 189 6 30 335 39 342 7.21e-67 215
Msa0194400 MtrunA17_Chr4g0008851 37.389 337 196 8 14 341 13 343 3.42e-66 213
Msa0194400 MtrunA17_Chr4g0060811 35.783 313 193 6 34 342 29 337 4.96e-66 213
Msa0194400 MtrunA17_Chr3g0092131 35.821 335 202 9 13 342 7 333 1.17e-65 212
Msa0194400 MtrunA17_Chr5g0438641 35.447 347 216 6 1 343 1 343 1.38e-65 211
Msa0194400 MtrunA17_Chr3g0120861 37.188 320 193 6 27 342 33 348 1.60e-65 211
Msa0194400 MtrunA17_Chr6g0457921 36.522 345 205 7 14 346 8 350 2.17e-65 211
Msa0194400 MtrunA17_Chr1g0189891 36.111 360 208 9 14 365 11 356 7.93e-65 210
Msa0194400 MtrunA17_Chr1g0156921 34.375 352 209 8 1 336 1 346 1.51e-64 209
Msa0194400 MtrunA17_Chr2g0320671 35.088 342 212 7 6 342 4 340 3.38e-64 208
Msa0194400 MtrunA17_Chr4g0027521 35.694 353 203 10 16 357 11 350 7.88e-64 207
Msa0194400 MtrunA17_Chr1g0156901 36.452 310 190 5 30 336 48 353 1.23e-63 207
Msa0194400 MtrunA17_Chr5g0438621 35.569 343 208 8 6 340 1 338 4.61e-63 205
Msa0194400 MtrunA17_Chr1g0156911 35.806 310 190 6 31 336 36 340 4.83e-63 205
Msa0194400 MtrunA17_Chr3g0099231 35.068 365 211 11 13 365 11 361 9.15e-63 205
Msa0194400 MtrunA17_Chr3g0142941 34.516 310 196 5 30 336 45 350 5.22e-62 202
Msa0194400 MtrunA17_Chr2g0330781 36.364 319 192 7 30 342 29 342 1.73e-61 201
Msa0194400 MtrunA17_Chr7g0215961 33.934 333 202 5 13 341 11 329 3.03e-61 200
Msa0194400 MtrunA17_Chr3g0105401 34.018 341 218 6 6 342 2 339 3.17e-61 200
Msa0194400 MtrunA17_Chr1g0156891 34.821 336 204 8 11 336 17 347 3.98e-61 200
Msa0194400 MtrunA17_Chr8g0341001 35.398 339 205 9 13 342 10 343 4.92e-61 200
Msa0194400 MtrunA17_Chr5g0438631 36.443 343 204 9 8 341 1 338 6.70e-61 199
Msa0194400 MtrunA17_Chr3g0142921 34.839 310 194 6 31 336 35 340 7.07e-60 197
Msa0194400 MtrunA17_Chr8g0371491 34.356 326 206 6 28 349 32 353 1.72e-58 193
Msa0194400 MtrunA17_Chr3g0085231 33.520 358 216 9 11 364 10 349 2.38e-56 187
Msa0194400 MtrunA17_Chr5g0405831 32.915 319 205 6 28 341 39 353 3.29e-56 187
Msa0194400 MtrunA17_Chr5g0420811 33.528 343 201 12 13 346 12 336 8.07e-56 186
Msa0194400 MtrunA17_Chr5g0405821 30.966 352 231 9 6 349 15 362 1.63e-55 186
Msa0194400 MtrunA17_Chr8g0371481 31.288 326 217 6 28 349 37 359 4.24e-54 182
Msa0194400 MtrunA17_Chr2g0283191 30.994 342 214 9 14 337 15 352 5.19e-54 182
Msa0194400 MtrunA17_Chr8g0371471 30.982 326 217 6 28 349 37 358 1.31e-53 181
Msa0194400 MtrunA17_Chr5g0432101 34.177 316 198 7 34 343 35 346 2.21e-53 180
Msa0194400 MtrunA17_Chr4g0046151 31.746 315 200 8 34 337 38 348 1.68e-46 162
Msa0194400 MtrunA17_Chr5g0437421 31.498 327 201 8 29 341 29 346 2.03e-46 162
Msa0194400 MtrunA17_Chr2g0301641 34.118 340 203 12 34 362 45 374 2.60e-46 162
Msa0194400 MtrunA17_Chr1g0157001 32.915 319 196 6 37 351 41 345 9.18e-45 158
Msa0194400 MtrunA17_Chr8g0370981 31.965 341 216 7 28 360 40 372 1.22e-44 158
Msa0194400 MtrunA17_Chr8g0344931 30.189 371 232 12 6 365 7 361 2.91e-44 156
Msa0194400 MtrunA17_Chr8g0344941 29.582 311 206 6 34 337 43 347 2.40e-43 154
Msa0194400 MtrunA17_Chr8g0370951 29.730 370 235 11 6 364 12 367 1.53e-42 152
Msa0194400 MtrunA17_Chr6g0459921 31.579 247 164 4 120 365 119 361 3.86e-42 150
Msa0194400 MtrunA17_Chr8g0349321 30.030 333 211 8 24 347 29 348 7.80e-42 150
Msa0194400 MtrunA17_Chr6g0455661 32.143 252 160 6 116 365 230 472 7.32e-41 149
Msa0194400 MtrunA17_Chr6g0455661 54.630 108 48 1 18 125 17 123 3.04e-28 114
Msa0194400 MtrunA17_Chr2g0284931 32.922 243 136 5 124 365 4 220 9.89e-40 140
Msa0194400 MtrunA17_Chr8g0349341 29.341 334 214 8 24 348 29 349 1.27e-39 144
Msa0194400 MtrunA17_Chr8g0349301 30.508 295 183 7 24 312 29 307 8.51e-38 138
Msa0194400 MtrunA17_Chr7g0254461 27.577 359 223 9 29 359 40 389 2.70e-34 130
Msa0194400 MtrunA17_Chr8g0370961 32.579 221 132 6 126 340 12 221 3.61e-34 126
Msa0194400 MtrunA17_Chr5g0440501 30.894 246 158 5 130 364 6 250 1.47e-33 125
Msa0194400 MtrunA17_Chr7g0229591 41.143 175 96 5 30 201 28 198 1.01e-32 121
Msa0194400 MtrunA17_Chr7g0226931 25.313 399 240 10 7 357 6 394 1.03e-32 126
Msa0194400 MtrunA17_Chr1g0160101 27.838 370 219 10 4 341 14 367 4.58e-32 124
Msa0194400 MtrunA17_Chr4g0027571 31.429 210 140 3 133 341 3 209 1.02e-30 116
Msa0194400 MtrunA17_Chr8g0381581 27.763 371 230 11 6 347 12 373 1.23e-30 120
Msa0194400 MtrunA17_Chr8g0349331 25.284 352 210 8 16 357 19 327 1.56e-30 119
Msa0194400 MtrunA17_Chr1g0160011 27.487 382 235 12 8 361 13 380 3.67e-30 119
Msa0194400 MtrunA17_Chr1g0159991 27.604 384 233 11 8 361 10 378 4.46e-30 118
Msa0194400 MtrunA17_Chr7g0226911 24.409 381 241 10 14 357 10 380 1.41e-29 117
Msa0194400 MtrunA17_Chr8g0347751 25.967 362 223 10 34 365 38 384 1.94e-29 117
Msa0194400 MtrunA17_Chr2g0285041 41.935 124 71 1 85 207 1 124 3.52e-29 110
Msa0194400 MtrunA17_Chr6g0450721 27.273 341 217 9 31 357 32 355 3.96e-29 115
Msa0194400 MtrunA17_Chr1g0160031 27.247 356 224 10 11 341 16 361 5.94e-29 115
Msa0194400 MtrunA17_Chr1g0159981 27.202 386 244 11 1 361 15 388 9.17e-29 115
Msa0194400 MtrunA17_Chr7g0271551 26.012 346 229 8 25 357 29 360 1.28e-28 114
Msa0194400 MtrunA17_Chr7g0275291 25.260 384 231 12 9 356 7 370 1.40e-28 114
Msa0194400 MtrunA17_Chr1g0159971 26.933 401 232 13 1 360 8 388 2.70e-28 114
Msa0194400 MtrunA17_Chr8g0352901 28.779 344 200 9 31 344 27 355 3.00e-28 113
Msa0194400 MtrunA17_Chr6g0450731 28.116 345 211 11 31 357 32 357 3.19e-27 110
Msa0194400 MtrunA17_Chr6g0450701 28.488 344 200 10 29 344 36 361 5.74e-27 110
Msa0194400 MtrunA17_Chr1g0178941 25.816 337 216 10 34 357 42 357 1.81e-26 108
Msa0194400 MtrunA17_Chr7g0226941 26.629 353 223 10 31 357 32 374 3.68e-25 105
Msa0194400 MtrunA17_Chr1g0178931 27.445 317 192 12 34 337 39 330 3.77e-25 104
Msa0194400 MtrunA17_Chr6g0469511 46.429 112 56 3 30 138 28 138 8.12e-25 98.6
Msa0194400 MtrunA17_Chr2g0283511 27.576 330 205 12 37 342 36 355 1.51e-24 103
Msa0194400 MtrunA17_Chr1g0189921 43.697 119 65 2 13 129 12 130 4.08e-24 97.1
Msa0194400 MtrunA17_Chr6g0450711 27.809 356 209 12 31 357 121 457 8.81e-24 102
Msa0194400 MtrunA17_Chr7g0273101 25.000 368 224 11 26 357 23 374 9.77e-24 100
Msa0194400 MtrunA17_Chr3g0104821 24.412 340 210 11 34 343 46 368 1.77e-23 100
Msa0194400 MtrunA17_Chr7g0266061 26.562 320 192 11 34 337 44 336 9.63e-23 97.8
Msa0194400 MtrunA17_Chr4g0027561 49.485 97 46 2 30 123 28 124 1.16e-22 92.8
Msa0194400 MtrunA17_Chr2g0317261 25.994 327 208 13 33 343 31 339 4.60e-22 95.9
Msa0194400 MtrunA17_Chr1g0191461 24.457 368 231 10 8 344 7 358 9.87e-22 95.1
Msa0194400 MtrunA17_Chr8g0339251 29.492 295 175 9 31 312 27 301 1.04e-21 94.7
Msa0194400 MtrunA17_Chr7g0229581 33.333 135 89 1 208 341 8 142 1.66e-21 90.1
Msa0194400 MtrunA17_Chr4g0057991 24.234 359 238 10 6 341 8 355 2.01e-21 94.4
Msa0194400 MtrunA17_Chr8g0370971 48.333 120 51 4 14 123 18 136 7.24e-21 88.6
Msa0194400 MtrunA17_Chr1g0198381 25.223 337 190 12 34 345 4 303 1.18e-20 91.3
Msa0194400 MtrunA17_Chr2g0301581 25.490 357 222 14 9 343 7 341 1.53e-20 91.7
Msa0194400 MtrunA17_Chr3g0112821 23.780 328 219 13 34 343 32 346 7.36e-20 89.7
Msa0194400 MtrunA17_Chr2g0301541 25.210 357 223 14 9 343 7 341 2.24e-19 88.2
Msa0194400 MtrunA17_Chr2g0283501 25.904 332 212 10 32 338 28 350 3.42e-19 87.8
Msa0194400 MtrunA17_Chr2g0321991 44.037 109 54 4 13 115 12 119 3.54e-19 82.8
Msa0194400 MtrunA17_Chr2g0283481 25.378 331 215 11 34 342 49 369 6.13e-19 87.4
Msa0194400 MtrunA17_Chr1g0198351 25.915 328 182 12 34 337 45 335 1.14e-18 86.3
Msa0194400 MtrunA17_Chr1g0189911 28.276 145 101 3 219 362 1 143 5.22e-18 80.1
Msa0194400 MtrunA17_Chr2g0283531 27.928 333 206 13 34 343 33 354 1.04e-17 83.6
Msa0194400 MtrunA17_Chr3g0093031 23.423 333 219 14 34 343 32 351 4.42e-17 81.6
Msa0194400 MtrunA17_Chr2g0285051 69.643 56 17 0 27 82 31 86 9.40e-17 75.9
Msa0194400 MtrunA17_Chr2g0308201 45.238 84 45 1 1 84 5 87 4.53e-15 70.1
Msa0194400 MtrunA17_Chr1g0198391 23.460 341 194 14 34 337 35 345 3.82e-14 72.8
Msa0194400 MtrunA17_Chr3g0112691 23.881 335 213 13 34 343 32 349 1.68e-13 70.9
Msa0194400 MtrunA17_Chr2g0301591 25.676 296 188 11 9 291 7 283 1.81e-13 70.1
Msa0194400 MtrunA17_Chr7g0228261 44.068 59 33 0 283 341 11 69 3.91e-13 65.1
Msa0194400 MtrunA17_Chr4g0018571 30.435 138 95 1 208 344 31 168 1.62e-12 65.5
Msa0194400 MtrunA17_Chr2g0285031 47.297 74 35 3 292 364 7 77 1.68e-12 62.8
Msa0194400 MtrunA17_Chr4g0018561 61.538 52 19 1 30 80 28 79 1.76e-12 63.2
Msa0194400 MtrunA17_Chr3g0096551 21.449 345 223 12 34 343 31 362 2.31e-12 67.8
Msa0194400 MtrunA17_Chr6g0469521 30.928 97 67 0 208 304 32 128 7.65e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194400 AT1G29670.2 74.790 357 82 4 14 365 78 431 0.0 544
Msa0194400 AT1G29670.1 74.790 357 82 4 14 365 10 363 0.0 541
Msa0194400 AT5G45670.1 67.123 365 117 1 1 365 1 362 1.23e-179 503
Msa0194400 AT1G29660.1 65.915 355 120 1 11 365 11 364 6.31e-177 496
Msa0194400 AT4G18970.1 70.149 335 100 0 31 365 27 361 3.57e-174 489
Msa0194400 AT4G18970.2 70.149 335 100 0 31 365 27 361 8.57e-173 487
Msa0194400 AT1G33811.1 54.519 343 147 5 29 365 31 370 1.30e-125 366
Msa0194400 AT1G71691.2 47.564 349 175 6 17 365 43 383 1.23e-113 336
Msa0194400 AT5G08460.1 45.789 380 186 7 3 365 9 385 2.47e-111 330
Msa0194400 AT5G15720.1 46.045 354 180 7 20 365 14 364 7.69e-107 318
Msa0194400 AT1G71250.1 45.777 367 186 6 9 365 10 373 2.04e-106 317
Msa0194400 AT2G19010.1 43.220 354 182 6 13 364 11 347 9.58e-101 302
Msa0194400 AT2G19010.2 43.220 354 182 6 13 364 41 377 3.97e-100 301
Msa0194400 AT2G19050.1 43.440 343 173 6 26 365 25 349 4.09e-96 290
Msa0194400 AT2G19060.1 43.827 324 162 6 28 346 26 334 3.16e-93 283
Msa0194400 AT4G30140.1 47.493 339 153 8 28 362 29 346 1.28e-89 273
Msa0194400 AT1G71691.1 44.161 274 149 4 92 365 13 282 6.15e-84 256
Msa0194400 AT1G71691.3 47.464 276 138 5 17 292 43 311 9.85e-83 254
Msa0194400 AT2G19050.2 47.826 253 124 2 26 278 25 269 1.05e-82 253
Msa0194400 AT5G15720.3 43.750 288 156 5 82 365 48 333 2.51e-81 251
Msa0194400 AT5G15720.2 45.552 281 143 6 20 292 14 292 4.13e-77 240
Msa0194400 AT4G10950.2 37.278 338 206 5 30 364 69 403 1.59e-75 239
Msa0194400 AT2G23540.1 40.252 318 183 5 34 344 50 367 2.88e-74 235
Msa0194400 AT4G10950.1 36.391 338 205 5 30 364 69 399 9.18e-72 229
Msa0194400 AT5G33370.1 36.119 335 209 5 33 365 31 362 5.75e-71 226
Msa0194400 AT3G50400.1 38.298 329 193 7 25 344 27 354 1.16e-70 226
Msa0194400 AT5G37690.1 37.658 316 189 7 34 346 29 339 2.08e-70 224
Msa0194400 AT3G04290.1 39.683 315 178 7 33 341 30 338 4.53e-68 219
Msa0194400 AT4G28780.1 38.217 314 184 6 33 341 32 340 4.52e-67 216
Msa0194400 AT1G74460.1 37.061 313 189 7 34 342 25 333 7.85e-67 215
Msa0194400 AT5G55050.1 38.438 333 188 9 20 341 27 353 2.80e-65 212
Msa0194400 AT2G42990.1 35.693 339 209 7 13 347 10 343 2.81e-65 211
Msa0194400 AT5G18430.1 38.679 318 185 5 33 344 29 342 3.71e-65 211
Msa0194400 AT3G53100.1 37.725 334 198 7 14 342 11 339 5.10e-65 210
Msa0194400 AT5G37690.2 33.721 344 212 8 6 346 1 331 8.36e-65 209
Msa0194400 AT1G75880.1 36.991 319 188 8 30 341 50 362 4.72e-63 206
Msa0194400 AT1G75880.2 37.304 319 186 9 30 341 50 361 7.05e-63 205
Msa0194400 AT2G04570.1 34.218 339 215 6 14 348 10 344 1.09e-62 204
Msa0194400 AT5G22810.1 35.938 320 194 7 30 342 32 347 4.17e-62 203
Msa0194400 AT5G42170.1 34.385 317 195 7 30 341 48 356 5.40e-62 203
Msa0194400 AT3G14820.1 32.571 350 215 10 5 344 2 340 9.18e-62 202
Msa0194400 AT1G75890.2 34.954 329 197 10 28 347 43 363 1.76e-61 201
Msa0194400 AT1G75890.3 34.954 329 197 10 28 347 72 392 2.69e-61 202
Msa0194400 AT5G41890.1 35.150 367 211 9 18 365 17 375 5.83e-61 201
Msa0194400 AT1G75890.1 33.724 341 198 10 28 347 43 376 2.26e-59 196
Msa0194400 AT5G03810.1 34.535 333 208 8 16 342 13 341 4.66e-59 195
Msa0194400 AT5G03820.1 34.384 349 218 8 1 342 1 345 9.73e-59 194
Msa0194400 AT5G03820.2 35.329 334 205 8 16 342 44 373 2.38e-58 194
Msa0194400 AT3G16370.1 34.154 325 203 8 24 342 22 341 7.24e-58 192
Msa0194400 AT4G26790.1 33.648 318 203 6 29 342 26 339 1.79e-57 191
Msa0194400 AT4G26790.2 33.648 318 203 6 29 342 26 339 1.79e-57 191
Msa0194400 AT1G75900.1 32.595 316 204 6 30 341 41 351 2.31e-57 191
Msa0194400 AT1G59406.1 33.333 345 207 10 9 341 3 336 3.55e-57 190
Msa0194400 AT1G59030.1 33.333 345 207 10 9 341 3 336 3.55e-57 190
Msa0194400 AT1G58725.1 33.333 345 207 10 9 341 3 336 3.55e-57 190
Msa0194400 AT4G16230.1 40.000 240 138 5 13 248 10 247 5.03e-56 184
Msa0194400 AT2G31540.1 35.016 317 198 7 31 342 34 347 6.99e-56 187
Msa0194400 AT2G24560.1 34.591 318 198 8 31 342 33 346 1.49e-55 186
Msa0194400 AT1G20132.1 34.603 315 192 7 28 335 57 364 8.70e-55 184
Msa0194400 AT1G20135.1 32.024 331 205 8 10 335 5 320 5.83e-54 181
Msa0194400 AT2G30310.1 33.956 321 196 9 31 342 33 346 1.77e-52 178
Msa0194400 AT5G63170.1 33.742 326 196 7 14 335 10 319 1.94e-52 177
Msa0194400 AT5G33370.2 37.262 263 161 4 32 292 30 290 2.46e-52 177
Msa0194400 AT2G30220.1 33.232 328 189 9 31 342 32 345 3.26e-52 177
Msa0194400 AT1G20120.1 31.761 318 209 6 31 344 77 390 3.35e-52 178
Msa0194400 AT2G03980.2 33.739 329 198 9 31 350 42 359 3.40e-52 177
Msa0194400 AT2G03980.3 33.739 329 198 9 31 350 42 359 3.40e-52 177
Msa0194400 AT2G03980.1 33.739 329 198 9 31 350 42 359 3.40e-52 177
Msa0194400 AT2G03980.4 33.739 329 198 9 31 350 42 359 3.40e-52 177
Msa0194400 AT1G58520.3 32.308 325 194 10 25 341 23 329 9.31e-52 176
Msa0194400 AT1G58525.1 32.308 325 194 10 25 341 23 329 9.31e-52 176
Msa0194400 AT1G58430.1 33.019 318 203 8 31 342 34 347 1.02e-50 173
Msa0194400 AT1G73610.1 33.739 329 191 8 24 342 21 332 1.35e-49 170
Msa0194400 AT1G06990.1 32.390 318 204 7 31 342 36 348 2.89e-49 169
Msa0194400 AT1G23500.1 33.233 331 195 8 24 344 21 335 9.01e-49 168
Msa0194400 AT1G20130.2 31.611 329 206 8 28 343 180 502 4.06e-48 170
Msa0194400 AT1G20130.1 31.611 329 206 8 28 343 200 522 6.59e-48 170
Msa0194400 AT2G40250.1 30.218 321 210 7 34 345 38 353 4.00e-47 164
Msa0194400 AT3G43570.1 29.912 341 195 9 9 341 3 307 5.83e-47 162
Msa0194400 AT5G45950.1 30.564 337 222 9 12 345 20 347 3.46e-46 161
Msa0194400 AT1G53920.1 29.714 350 221 7 30 365 46 384 1.33e-43 155
Msa0194400 AT1G71120.1 31.118 331 203 9 27 347 26 341 6.13e-43 153
Msa0194400 AT3G43550.1 31.864 295 182 9 6 292 3 286 2.54e-42 149
Msa0194400 AT5G45960.1 28.797 316 213 7 28 335 43 354 2.49e-41 149
Msa0194400 AT1G75930.1 30.696 316 199 9 34 343 31 332 3.38e-40 145
Msa0194400 AT1G75920.2 29.619 341 216 8 15 344 6 333 1.45e-39 144
Msa0194400 AT2G24560.2 33.088 272 172 8 31 296 33 300 5.86e-37 136
Msa0194400 AT1G75910.1 30.117 342 215 10 14 344 5 333 2.35e-36 135
Msa0194400 AT1G75920.1 28.487 337 208 8 28 344 20 343 1.13e-35 133
Msa0194400 AT5G40990.1 30.031 323 204 8 34 343 39 352 1.17e-35 134
Msa0194400 AT3G14225.2 30.094 319 209 7 34 343 39 352 3.74e-35 132
Msa0194400 AT3G14225.1 29.907 321 211 7 34 343 39 356 9.14e-35 131
Msa0194400 AT2G04020.1 36.620 213 121 5 31 238 42 245 1.99e-34 128
Msa0194400 AT2G04020.2 36.538 208 118 5 31 233 42 240 7.11e-33 125
Msa0194400 AT1G53940.2 28.659 328 216 8 34 350 41 361 3.12e-32 124
Msa0194400 AT1G09390.1 27.273 374 243 9 1 356 1 363 3.87e-32 124
Msa0194400 AT3G05180.1 28.378 370 209 14 26 359 30 379 4.98e-32 124
Msa0194400 AT1G53990.1 28.483 323 210 8 34 347 37 347 2.87e-31 122
Msa0194400 AT2G31550.1 30.622 209 142 3 137 344 2 208 3.45e-31 118
Msa0194400 AT1G56670.1 26.503 366 231 10 11 356 19 366 1.63e-30 120
Msa0194400 AT3G27950.1 25.532 376 242 9 6 356 3 365 2.02e-30 119
Msa0194400 AT1G75920.4 27.961 304 201 7 46 344 15 305 5.22e-30 117
Msa0194400 AT1G54790.3 26.440 382 234 11 10 356 7 376 5.24e-30 119
Msa0194400 AT1G75920.3 26.844 339 197 8 15 344 6 302 1.69e-29 116
Msa0194400 AT4G16233.1 42.636 129 72 2 238 365 3 130 2.20e-29 110
Msa0194400 AT3G62280.1 28.746 327 209 10 27 341 31 345 9.02e-29 115
Msa0194400 AT3G26430.1 26.836 354 223 10 31 357 30 374 7.89e-28 112
Msa0194400 AT1G54020.2 26.377 345 227 11 11 348 9 333 1.07e-27 112
Msa0194400 AT1G67830.1 26.100 341 214 9 29 341 27 357 1.61e-27 112
Msa0194400 AT3G48460.1 25.762 361 231 13 8 342 8 357 4.45e-27 110
Msa0194400 AT1G54790.1 23.834 386 248 10 6 356 1 375 9.31e-26 107
Msa0194400 AT3G09930.2 27.329 322 191 14 34 337 41 337 8.43e-25 103
Msa0194400 AT3G09930.1 27.329 322 191 14 34 337 41 337 8.43e-25 103
Msa0194400 AT1G54030.1 26.959 319 204 11 34 348 54 347 1.11e-24 104
Msa0194400 AT1G28640.1 25.287 348 217 13 36 355 39 371 1.89e-24 103
Msa0194400 AT5G14450.1 26.912 353 222 11 31 357 40 382 6.07e-24 102
Msa0194400 AT5G03610.1 27.619 315 198 11 34 337 45 340 6.65e-24 101
Msa0194400 AT1G28600.1 24.468 376 235 13 13 355 7 366 1.51e-23 100
Msa0194400 AT1G53940.1 29.167 264 175 7 34 292 41 297 2.17e-23 99.4
Msa0194400 AT5G03600.1 24.845 322 202 9 28 337 10 303 2.44e-23 99.4
Msa0194400 AT1G31550.2 25.610 328 206 10 36 338 40 354 3.23e-23 100
Msa0194400 AT1G54010.1 25.000 372 251 12 1 362 1 354 4.98e-23 99.4
Msa0194400 AT5G03600.2 24.845 322 202 9 28 337 45 338 5.06e-23 99.0
Msa0194400 AT2G27360.1 27.108 332 208 12 36 343 37 358 3.13e-22 97.4
Msa0194400 AT1G28650.1 25.215 349 216 12 36 355 41 373 3.22e-22 97.1
Msa0194400 AT1G54000.1 24.661 369 242 13 8 362 8 354 3.41e-22 97.1
Msa0194400 AT4G16220.1 46.429 112 57 2 13 122 11 121 4.47e-22 94.4
Msa0194400 AT1G28570.1 24.791 359 226 14 16 343 13 358 5.08e-22 96.7
Msa0194400 AT4G01130.1 24.654 361 226 13 13 341 14 360 1.06e-21 95.5
Msa0194400 AT3G14220.1 27.762 353 215 13 24 362 24 350 1.76e-21 94.7
Msa0194400 AT1G54790.2 22.816 412 246 12 6 356 1 401 8.44e-21 93.2
Msa0194400 AT1G28580.1 23.161 367 244 12 13 351 13 369 1.50e-20 92.4
Msa0194400 AT1G28660.1 24.207 347 222 12 36 355 39 371 1.90e-20 92.0
Msa0194400 AT1G28670.1 23.977 342 230 11 36 355 39 372 3.19e-20 91.3
Msa0194400 AT1G56670.2 26.599 297 185 8 11 292 19 297 3.30e-20 90.1
Msa0194400 AT1G31550.1 24.848 330 203 11 36 338 40 351 4.60e-20 90.9
Msa0194400 AT1G28610.2 25.069 363 231 14 1 337 1 348 5.84e-20 90.5
Msa0194400 AT3G62280.2 27.586 261 170 7 27 280 31 279 9.14e-20 89.0
Msa0194400 AT1G28660.2 23.919 347 222 13 36 355 39 370 1.48e-19 89.4
Msa0194400 AT3G14210.1 26.946 334 199 15 34 349 38 344 1.88e-17 83.6
Msa0194400 AT2G36325.1 26.959 319 193 13 34 337 49 342 4.90e-17 82.0
Msa0194400 AT1G54020.1 23.413 252 172 6 100 348 14 247 4.70e-16 78.2
Msa0194400 AT1G54020.5 23.413 252 172 6 100 348 14 247 4.70e-16 78.2
Msa0194400 AT1G54020.3 23.413 252 172 6 100 348 14 247 4.70e-16 78.2
Msa0194400 AT1G54030.2 25.856 263 168 9 34 292 54 293 8.61e-15 74.7
Msa0194400 AT1G54020.4 24.500 200 143 4 152 348 4 198 9.19e-15 73.6
Msa0194400 AT4G01130.3 25.871 201 123 6 160 341 81 274 1.00e-14 74.3
Msa0194400 AT1G28600.2 28.814 177 102 7 13 172 7 176 1.82e-12 66.6
Msa0194400 AT5G03590.2 37.838 111 59 4 3 110 8 111 3.75e-11 62.4

Find 100 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCTATGTAAATGTTTA+TGG 0.121393 2_1:-10354531 Msa0194400:CDS
TCCCAATTGGTAAATTATTT+TGG 0.123489 2_1:-10355102 Msa0194400:CDS
ATAGGAATGGGTTCTTATTT+TGG 0.148038 2_1:-10354292 Msa0194400:CDS
AGATATGGGGCAAAGATTTA+AGG 0.220099 2_1:+10356463 None:intergenic
GCAAGGAAAATGGCGTTATT+TGG 0.222275 2_1:-10354708 Msa0194400:CDS
TTCATTTGAATGCGTCTAAA+AGG 0.238613 2_1:-10354064 Msa0194400:three_prime_UTR
ATGTTTGCAGTTGTATTTAA+TGG 0.245269 2_1:-10353964 Msa0194400:three_prime_UTR
CAATTATGGGGCAAGGAAAA+TGG 0.278362 2_1:-10354718 Msa0194400:CDS
GAAGCTGGAAATAGTGTTAT+TGG 0.291749 2_1:-10354251 Msa0194400:CDS
TCAAATGAACAATACATTAT+AGG 0.293432 2_1:+10354078 None:intergenic
AAAGCTAATTACTTACCTTA+TGG 0.293691 2_1:-10356151 Msa0194400:CDS
CCTTATGGAATTGACTTTCC+TGG 0.310132 2_1:-10356136 Msa0194400:CDS
TAAATAGTTGTAATGGCTAA+TGG 0.313041 2_1:+10356359 None:intergenic
CTCCAAAATAATTTACCAAT+TGG 0.315553 2_1:+10355100 None:intergenic
GGAGACTCTTTGGTGGATAA+TGG 0.317349 2_1:-10356202 Msa0194400:CDS
ACGTACGGTTGAGGATATTT+TGG 0.318445 2_1:+10356491 None:intergenic
GCTACACATGTTCTACCATC+TGG 0.337001 2_1:+10354639 None:intergenic
AGCAAGTGCATTTATACAAT+TGG 0.341319 2_1:-10355051 Msa0194400:CDS
GACTTTCCTGGCGGACCAAC+TGG 0.344384 2_1:-10356124 Msa0194400:CDS
ACCTCTCTATGATTAATATA+GGG 0.359317 2_1:-10356297 Msa0194400:CDS
TTGAGTTTGTGGAGTGGAAT+TGG 0.370240 2_1:-10356259 Msa0194400:CDS
GGTGGAGGAGGAAGAGATAT+GGG 0.372002 2_1:+10356449 None:intergenic
GACCTCTCTATGATTAATAT+AGG 0.379454 2_1:-10356298 Msa0194400:CDS
TGGTGGAGGAGGAAGAGATA+TGG 0.380602 2_1:+10356448 None:intergenic
TTATTTGGAGTTGGTCAAAT+AGG 0.381637 2_1:-10354693 Msa0194400:CDS
GCTAAACGATTAATATCAAT+AGG 0.383756 2_1:+10354188 None:intergenic
AAATTTAACAGCTGAGCAAT+TGG 0.383884 2_1:-10355390 Msa0194400:intron
GTGCATTTATACAATTGGAT+TGG 0.387852 2_1:-10355046 Msa0194400:CDS
TAGGCATGAAATAATTGTTA+AGG 0.404750 2_1:+10355010 None:intergenic
ACTTGGACTTGTTGCACAAA+AGG 0.405032 2_1:+10354019 None:intergenic
AAATAGTTGTAATGGCTAAT+GGG 0.406432 2_1:+10356360 None:intergenic
TGCATTTATACAATTGGATT+GGG 0.411957 2_1:-10355045 Msa0194400:CDS
TCCAAAATAATTTACCAATT+GGG 0.418563 2_1:+10355101 None:intergenic
AATTTAACAGCTGAGCAATT+GGG 0.419050 2_1:-10355389 Msa0194400:intron
CCAATTGGGACACTGTCCTT+TGG 0.421179 2_1:+10355115 None:intergenic
AGAAGAAACTGGACAACAAT+TGG 0.429608 2_1:-10355276 Msa0194400:intron
AACCTTCCAGTTGGTCCGCC+AGG 0.439561 2_1:+10356118 None:intergenic
GCTGGAATCAGAGAAGAAAC+TGG 0.443343 2_1:-10355287 Msa0194400:CDS
GCCCTTTCAACCTGCATGTA+GGG 0.443708 2_1:-10354315 Msa0194400:CDS
TGACTCCTCTGAGTATTTGT+CGG 0.445631 2_1:+10355327 None:intergenic
GCTGAGCAATTGGGGTTCAA+TGG 0.449798 2_1:-10355380 Msa0194400:CDS
AATTATGCTTCAGCAGCTGC+TGG 0.456416 2_1:-10355305 Msa0194400:CDS
GCATTTCATCCAACTGAAGC+TGG 0.464411 2_1:-10354266 Msa0194400:CDS
ACATAGATGAATCTTGCATC+AGG 0.464951 2_1:+10354543 None:intergenic
AATATGGTAAATAGTTGTAA+TGG 0.473550 2_1:+10356352 None:intergenic
CTACTGGTAGAATAGATTGT+AGG 0.474873 2_1:+10354991 None:intergenic
AAGCATATGCTCAGCAACTC+AGG 0.475429 2_1:-10354930 Msa0194400:CDS
AAATAATTACCATAGGATGA+TGG 0.485604 2_1:+10354483 None:intergenic
ATCCCTACATGCAGGTTGAA+AGG 0.488239 2_1:+10354313 None:intergenic
TATATATGTAGTGGTGGAGG+AGG 0.490702 2_1:+10356437 None:intergenic
TCCCTACATGCAGGTTGAAA+GGG 0.491272 2_1:+10354314 None:intergenic
AATAATTACCATAGGATGAT+GGG 0.493093 2_1:+10354484 None:intergenic
TAATATAGGGATAGTAGTGT+TGG 0.495285 2_1:-10356284 Msa0194400:CDS
ACACTATTTCCAGCTTCAGT+TGG 0.498634 2_1:+10354257 None:intergenic
TGAATCTTGCATCAGGAAGT+TGG 0.499393 2_1:+10354550 None:intergenic
TTGTGGTGTGAATTGTCTAC+TGG 0.500639 2_1:+10354975 None:intergenic
CCAAAGGACAGTGTCCCAAT+TGG 0.502815 2_1:-10355115 Msa0194400:CDS
AAAATGGCGTTATTTGGAGT+TGG 0.505537 2_1:-10354702 Msa0194400:CDS
CTACACATGTTCTACCATCT+GGG 0.517651 2_1:+10354640 None:intergenic
AGCTATATATGTAGTGGTGG+AGG 0.518351 2_1:+10356434 None:intergenic
GCAAATCAATTATTCAACAA+TGG 0.525590 2_1:-10354603 Msa0194400:CDS
TGCCCTTTCAACCTGCATGT+AGG 0.528510 2_1:-10354316 Msa0194400:CDS
CCAGGAAAGTCAATTCCATA+AGG 0.532610 2_1:+10356136 None:intergenic
AAAACCACTGTTGATGTCAT+TGG 0.535324 2_1:-10356085 Msa0194400:intron
ACATTATAGGACAATAATAG+TGG 0.536719 2_1:+10354091 None:intergenic
CTAAACGATTAATATCAATA+GGG 0.537755 2_1:+10354189 None:intergenic
GTGTGAAAGAGAGAGGGAGT+TGG 0.543520 2_1:+10356387 None:intergenic
ATTTAACAGCTGAGCAATTG+GGG 0.548458 2_1:-10355388 Msa0194400:intron
CTGCATGTAGGGATAGGAAT+GGG 0.549161 2_1:-10354304 Msa0194400:CDS
AATAGTTGTAATGGCTAATG+GGG 0.561722 2_1:+10356361 None:intergenic
AAAGACAAATTACGTACACT+TGG 0.562736 2_1:+10354002 None:intergenic
ATAACCAGCCCATCATCCTA+TGG 0.566345 2_1:-10354492 Msa0194400:intron
GCTGAGCATATGCTTGAAGA+AGG 0.570230 2_1:+10354938 None:intergenic
CCGTTGGAAAACCTTCCAGT+TGG 0.572941 2_1:+10356109 None:intergenic
TTGGCTCAAAACAGCCCAGA+TGG 0.578429 2_1:-10354654 Msa0194400:CDS
GGGGTGTGTGTGAAAGAGAG+AGG 0.580262 2_1:+10356380 None:intergenic
TTCCTGGCGGACCAACTGGA+AGG 0.581746 2_1:-10356120 Msa0194400:CDS
CCTGCATGTAGGGATAGGAA+TGG 0.583234 2_1:-10354305 Msa0194400:CDS
TTCAACCTGCATGTAGGGAT+AGG 0.585091 2_1:-10354310 Msa0194400:CDS
ATTACCATAGGATGATGGGC+TGG 0.593277 2_1:+10354488 None:intergenic
CCTTCCTATGCATCAGCTAG+AGG 0.593466 2_1:-10355350 Msa0194400:CDS
GTGGAGGAGGAAGAGATATG+GGG 0.595440 2_1:+10356450 None:intergenic
CAAAGCTATATATGTAGTGG+TGG 0.596809 2_1:+10356431 None:intergenic
GAGCAAAGCTATATATGTAG+TGG 0.599482 2_1:+10356428 None:intergenic
AATGCTGGATGCTGTGGTGT+AGG 0.601465 2_1:-10354365 Msa0194400:CDS
CCATTCCTATCCCTACATGC+AGG 0.604308 2_1:+10354305 None:intergenic
AGCATATGCTCAGCAACTCA+GGG 0.609775 2_1:-10354929 Msa0194400:intron
AGGACATTAGCATATTGTTG+TGG 0.611755 2_1:+10354958 None:intergenic
AGGTTGCACCCCAAATGCAT+TGG 0.618893 2_1:-10354673 Msa0194400:CDS
TCGGCCTCTAGCTGATGCAT+AGG 0.621799 2_1:+10355346 None:intergenic
GGGTGTGTGTGAAAGAGAGA+GGG 0.625667 2_1:+10356381 None:intergenic
TCCCTATATTAATCATAGAG+AGG 0.629627 2_1:+10356296 None:intergenic
CCTCTAGCTGATGCATAGGA+AGG 0.633798 2_1:+10355350 None:intergenic
GGCAAGTGCAAAATTACCAA+AGG 0.635259 2_1:-10355131 Msa0194400:CDS
GTTACAAATGCTGGATGCTG+TGG 0.642532 2_1:-10354371 Msa0194400:CDS
AGAGGCCGACAAATACTCAG+AGG 0.665360 2_1:-10355332 Msa0194400:CDS
AAGCTAGCATTAAATTTACG+CGG 0.677609 2_1:+10356517 None:intergenic
TATGGAATTGACTTTCCTGG+CGG 0.683663 2_1:-10356133 Msa0194400:CDS
CTCACCAATGACATCAACAG+TGG 0.697219 2_1:+10356081 None:intergenic
TGTGGTGTAGGAAGAAACAA+TGG 0.764473 2_1:-10354353 Msa0194400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTGAATTTAAATTATTTTA+GGG + chr2_1:10356018-10356037 None:intergenic 10.0%
!!! TTGTGAATTTAAATTATTTT+AGG + chr2_1:10356019-10356038 None:intergenic 10.0%
!!! CTAATAAGTTTTTTTTTTTA+AGG - chr2_1:10356333-10356352 Msa0194400:five_prime_UTR 10.0%
!!! AAATTTGAAGCAAAAAAATA+TGG + chr2_1:10354139-10354158 None:intergenic 15.0%
!!! ATTTTGTTATTCAATAGTTT+AGG - chr2_1:10354555-10354574 Msa0194400:CDS 15.0%
!!! TAAGCAAAAAAACATTTTTT+AGG + chr2_1:10354666-10354685 None:intergenic 15.0%
!!! TATAAGAATATTTTGAATCT+TGG - chr2_1:10354890-10354909 Msa0194400:intron 15.0%
!!! ATTATCTTTTTTCTTCATTT+GGG - chr2_1:10355254-10355273 Msa0194400:intron 15.0%
!!! ATATGCATTATATTTAAGTT+AGG - chr2_1:10355581-10355600 Msa0194400:intron 15.0%
!!! ATTCAGATTTTATACAATTA+TGG - chr2_1:10355740-10355759 Msa0194400:intron 15.0%
!!! TTCAGATTTTATACAATTAT+GGG - chr2_1:10355741-10355760 Msa0194400:intron 15.0%
!! AATATGGTAAATAGTTGTAA+TGG + chr2_1:10354123-10354142 None:intergenic 20.0%
!!! TTTTTGCTTCAAATTTTCAA+TGG - chr2_1:10354143-10354162 Msa0194400:three_prime_UTR 20.0%
!!! GATTATCTTTTTTCTTCATT+TGG - chr2_1:10355253-10355272 Msa0194400:intron 20.0%
!!! TACAAAATAAGGATCAATTT+TGG + chr2_1:10355298-10355317 None:intergenic 20.0%
!!! AAAATTGATCCTTATTTTGT+AGG - chr2_1:10355297-10355316 Msa0194400:CDS 20.0%
!!! AAATTGATCCTTATTTTGTA+GGG - chr2_1:10355298-10355317 Msa0194400:CDS 20.0%
!! TCCAAAATAATTTACCAATT+GGG + chr2_1:10355374-10355393 None:intergenic 20.0%
!! GTTATAATGAATTGATCTAA+CGG - chr2_1:10355639-10355658 Msa0194400:intron 20.0%
!!! TCAGATTTTATACAATTATG+GGG - chr2_1:10355742-10355761 Msa0194400:intron 20.0%
!! TTCATCTATGTAAATGTTTA+TGG - chr2_1:10355941-10355960 Msa0194400:intron 20.0%
!!! TTTCTTTCTTTCTAATTTTC+AGG - chr2_1:10356071-10356090 Msa0194400:intron 20.0%
!! CTAAACGATTAATATCAATA+GGG + chr2_1:10356286-10356305 None:intergenic 20.0%
!!! AGTTTTTTTTTTTAAGGTAG+TGG - chr2_1:10356339-10356358 Msa0194400:five_prime_UTR 20.0%
!! TCAAATGAACAATACATTAT+AGG + chr2_1:10356397-10356416 None:intergenic 20.0%
! AAATAGTTGTAATGGCTAAT+GGG + chr2_1:10354115-10354134 None:intergenic 25.0%
! TAAATAGTTGTAATGGCTAA+TGG + chr2_1:10354116-10354135 None:intergenic 25.0%
!! TCAAATTTTCAATGGCATTT+TGG - chr2_1:10354151-10354170 Msa0194400:three_prime_UTR 25.0%
!! CAAATTTTCAATGGCATTTT+GGG - chr2_1:10354152-10354171 Msa0194400:three_prime_UTR 25.0%
! ACCTCTCTATGATTAATATA+GGG - chr2_1:10354175-10354194 Msa0194400:exon 25.0%
!!! GTACCTTGCTATTTTATTTT+TGG - chr2_1:10354249-10354268 Msa0194400:CDS 25.0%
! TCTCCAAAAATAAAATAGCA+AGG + chr2_1:10354255-10354274 None:intergenic 25.0%
!!! TTTTATTTTTGGAGACTCTT+TGG - chr2_1:10354260-10354279 Msa0194400:CDS 25.0%
! AAAGCTAATTACTTACCTTA+TGG - chr2_1:10354321-10354340 Msa0194400:CDS 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr2_1:10354764-10354783 None:intergenic 25.0%
! CATTGAATACATGATGTATT+TGG + chr2_1:10354729-10354748 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr2_1:10354764-10354783 Msa0194400:intron 25.0%
! TACTCTTGTCTAACATTTAA+TGG - chr2_1:10355059-10355078 Msa0194400:CDS 25.0%
!!! AATTTTGGAAAATAAGCATG+TGG + chr2_1:10355283-10355302 None:intergenic 25.0%
!! TCCCAATTGGTAAATTATTT+TGG - chr2_1:10355370-10355389 Msa0194400:CDS 25.0%
! CTCCAAAATAATTTACCAAT+TGG + chr2_1:10355375-10355394 None:intergenic 25.0%
! TGCATTTATACAATTGGATT+GGG - chr2_1:10355427-10355446 Msa0194400:intron 25.0%
! TAGGCATGAAATAATTGTTA+AGG + chr2_1:10355465-10355484 None:intergenic 25.0%
! GCAAATCAATTATTCAACAA+TGG - chr2_1:10355869-10355888 Msa0194400:intron 25.0%
! AATAATTACCATAGGATGAT+GGG + chr2_1:10355991-10356010 None:intergenic 25.0%
! AAATAATTACCATAGGATGA+TGG + chr2_1:10355992-10356011 None:intergenic 25.0%
! GCTAAACGATTAATATCAAT+AGG + chr2_1:10356287-10356306 None:intergenic 25.0%
!!! CAAATCTAAAGAGTTTTTAG+TGG - chr2_1:10356308-10356327 Msa0194400:CDS 25.0%
! ACATTATAGGACAATAATAG+TGG + chr2_1:10356384-10356403 None:intergenic 25.0%
! ATGTTTGCAGTTGTATTTAA+TGG - chr2_1:10356508-10356527 Msa0194400:five_prime_UTR 25.0%
AAGCTAGCATTAAATTTACG+CGG + chr2_1:10353958-10353977 None:intergenic 30.0%
!! AGATTTAAGGCTTTTACGTA+CGG + chr2_1:10353999-10354018 None:intergenic 30.0%
AATAGTTGTAATGGCTAATG+GGG + chr2_1:10354114-10354133 None:intergenic 30.0%
GACCTCTCTATGATTAATAT+AGG - chr2_1:10354174-10354193 Msa0194400:exon 30.0%
TCCCTATATTAATCATAGAG+AGG + chr2_1:10354179-10354198 None:intergenic 30.0%
TAATATAGGGATAGTAGTGT+TGG - chr2_1:10354188-10354207 Msa0194400:CDS 30.0%
CATTGCATTCTTAATTAGCT+AGG - chr2_1:10354496-10354515 Msa0194400:CDS 30.0%
AAATTTAACAGCTGAGCAAT+TGG - chr2_1:10355082-10355101 Msa0194400:CDS 30.0%
AATTTAACAGCTGAGCAATT+GGG - chr2_1:10355083-10355102 Msa0194400:CDS 30.0%
!!! GACAACGAATTAGTTTTAGA+GGG - chr2_1:10355320-10355339 Msa0194400:CDS 30.0%
AGCAAGTGCATTTATACAAT+TGG - chr2_1:10355421-10355440 Msa0194400:intron 30.0%
GTGCATTTATACAATTGGAT+TGG - chr2_1:10355426-10355445 Msa0194400:intron 30.0%
ATTGATATTTGATGTAACCC+TGG + chr2_1:10355618-10355637 None:intergenic 30.0%
! TTTTATACAATTATGGGGCA+AGG - chr2_1:10355747-10355766 Msa0194400:intron 30.0%
! TTATTTGGAGTTGGTCAAAT+AGG - chr2_1:10355779-10355798 Msa0194400:intron 30.0%
AGGGAGAAAATAATTACCAT+AGG + chr2_1:10355999-10356018 None:intergenic 30.0%
!! ATAGGAATGGGTTCTTATTT+TGG - chr2_1:10356180-10356199 Msa0194400:CDS 30.0%
!!! TAGGAATGGGTTCTTATTTT+GGG - chr2_1:10356181-10356200 Msa0194400:CDS 30.0%
TTCATTTGAATGCGTCTAAA+AGG - chr2_1:10356408-10356427 Msa0194400:five_prime_UTR 30.0%
AAAGACAAATTACGTACACT+TGG + chr2_1:10356473-10356492 None:intergenic 30.0%
AGATATGGGGCAAAGATTTA+AGG + chr2_1:10354012-10354031 None:intergenic 35.0%
CAAAGCTATATATGTAGTGG+TGG + chr2_1:10354044-10354063 None:intergenic 35.0%
GAGCAAAGCTATATATGTAG+TGG + chr2_1:10354047-10354066 None:intergenic 35.0%
!!! TAGTGTTGGTTTTGAGTTTG+TGG - chr2_1:10354202-10354221 Msa0194400:CDS 35.0%
!!! TATTTTTGGAGACTCTTTGG+TGG - chr2_1:10354263-10354282 Msa0194400:CDS 35.0%
!! CTTTTGCTATAGAAGTGAGT+TGG + chr2_1:10354305-10354324 None:intergenic 35.0%
AAAACCACTGTTGATGTCAT+TGG - chr2_1:10354387-10354406 Msa0194400:intron 35.0%
! GTTATGATATCGTTTGCTAC+AGG - chr2_1:10354518-10354537 Msa0194400:CDS 35.0%
!!! CGATGAGAAGTTGTTTTGAA+TGG + chr2_1:10354617-10354636 None:intergenic 35.0%
TCGTTAAAAAATACTCCCTC+CGG - chr2_1:10354634-10354653 Msa0194400:CDS 35.0%
TGTTACATATATACTCCCTC+CGG + chr2_1:10354786-10354805 None:intergenic 35.0%
ACTAGAGTACGTAATACTGA+TGG + chr2_1:10354948-10354967 None:intergenic 35.0%
AATTACTTGCATGCATACAG+AGG + chr2_1:10355030-10355049 None:intergenic 35.0%
ATTTAACAGCTGAGCAATTG+GGG - chr2_1:10355084-10355103 Msa0194400:CDS 35.0%
AGAAGAAACTGGACAACAAT+TGG - chr2_1:10355196-10355215 Msa0194400:intron 35.0%
TTCGTTGTCCCTACAAAATA+AGG + chr2_1:10355309-10355328 None:intergenic 35.0%
!!! GGACAACGAATTAGTTTTAG+AGG - chr2_1:10355319-10355338 Msa0194400:CDS 35.0%
CTACTGGTAGAATAGATTGT+AGG + chr2_1:10355484-10355503 None:intergenic 35.0%
AGGACATTAGCATATTGTTG+TGG + chr2_1:10355517-10355536 None:intergenic 35.0%
AGTTAGGATCTATTAACACC+AGG - chr2_1:10355597-10355616 Msa0194400:intron 35.0%
GTTAGGATCTATTAACACCA+GGG - chr2_1:10355598-10355617 Msa0194400:intron 35.0%
! AAAATGGCGTTATTTGGAGT+TGG - chr2_1:10355770-10355789 Msa0194400:intron 35.0%
!! TGTTTTGAGCCAATGCATTT+GGG + chr2_1:10355811-10355830 None:intergenic 35.0%
ACATAGATGAATCTTGCATC+AGG + chr2_1:10355932-10355951 None:intergenic 35.0%
!!! GGTTTTAGAGTTACAAATGC+TGG - chr2_1:10356092-10356111 Msa0194400:CDS 35.0%
GAAGCTGGAAATAGTGTTAT+TGG - chr2_1:10356221-10356240 Msa0194400:CDS 35.0%
! ACGTACGGTTGAGGATATTT+TGG + chr2_1:10353984-10354003 None:intergenic 40.0%
! TATATATGTAGTGGTGGAGG+AGG + chr2_1:10354038-10354057 None:intergenic 40.0%
AGCTATATATGTAGTGGTGG+AGG + chr2_1:10354041-10354060 None:intergenic 40.0%
!!! TTGGTTTTGAGTTTGTGGAG+TGG - chr2_1:10354207-10354226 Msa0194400:CDS 40.0%
TTGAGTTTGTGGAGTGGAAT+TGG - chr2_1:10354213-10354232 Msa0194400:CDS 40.0%
CCAGGAAAGTCAATTCCATA+AGG + chr2_1:10354339-10354358 None:intergenic 40.0%
! CCTTATGGAATTGACTTTCC+TGG - chr2_1:10354336-10354355 Msa0194400:CDS 40.0%
! TATGGAATTGACTTTCCTGG+CGG - chr2_1:10354339-10354358 Msa0194400:CDS 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr2_1:10354768-10354787 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr2_1:10354767-10354786 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr2_1:10354767-10354786 Msa0194400:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr2_1:10354768-10354787 Msa0194400:intron 40.0%
TGACTCCTCTGAGTATTTGT+CGG + chr2_1:10355148-10355167 None:intergenic 40.0%
GGCAAGTGCAAAATTACCAA+AGG - chr2_1:10355341-10355360 Msa0194400:CDS 40.0%
TTGTGGTGTGAATTGTCTAC+TGG + chr2_1:10355500-10355519 None:intergenic 40.0%
CAATTATGGGGCAAGGAAAA+TGG - chr2_1:10355754-10355773 Msa0194400:intron 40.0%
GCAAGGAAAATGGCGTTATT+TGG - chr2_1:10355764-10355783 Msa0194400:intron 40.0%
!! GTTTTGAGCCAATGCATTTG+GGG + chr2_1:10355810-10355829 None:intergenic 40.0%
!! CTGTTTTGAGCCAATGCATT+TGG + chr2_1:10355812-10355831 None:intergenic 40.0%
CTACACATGTTCTACCATCT+GGG + chr2_1:10355835-10355854 None:intergenic 40.0%
TGAATCTTGCATCAGGAAGT+TGG + chr2_1:10355925-10355944 None:intergenic 40.0%
TGTGGTGTAGGAAGAAACAA+TGG - chr2_1:10356119-10356138 Msa0194400:CDS 40.0%
ACACTATTTCCAGCTTCAGT+TGG + chr2_1:10356218-10356237 None:intergenic 40.0%
!! ACTTGGACTTGTTGCACAAA+AGG + chr2_1:10356456-10356475 None:intergenic 40.0%
! AAGGCTTTTACGTACGGTTG+AGG + chr2_1:10353993-10354012 None:intergenic 45.0%
! GGAGACTCTTTGGTGGATAA+TGG - chr2_1:10354270-10354289 Msa0194400:CDS 45.0%
! CCAACTGGAAGGTTTTCCAA+CGG - chr2_1:10354363-10354382 Msa0194400:CDS 45.0%
!! ATCAACAGTGGTTTTGCCGT+TGG + chr2_1:10354382-10354401 None:intergenic 45.0%
CTCACCAATGACATCAACAG+TGG + chr2_1:10354394-10354413 None:intergenic 45.0%
AATTATGCTTCAGCAGCTGC+TGG - chr2_1:10355167-10355186 Msa0194400:intron 45.0%
GCTGGAATCAGAGAAGAAAC+TGG - chr2_1:10355185-10355204 Msa0194400:intron 45.0%
GCTGAGCATATGCTTGAAGA+AGG + chr2_1:10355537-10355556 None:intergenic 45.0%
AAGCATATGCTCAGCAACTC+AGG - chr2_1:10355542-10355561 Msa0194400:intron 45.0%
AGCATATGCTCAGCAACTCA+GGG - chr2_1:10355543-10355562 Msa0194400:intron 45.0%
GCTACACATGTTCTACCATC+TGG + chr2_1:10355836-10355855 None:intergenic 45.0%
ATAACCAGCCCATCATCCTA+TGG - chr2_1:10355980-10355999 Msa0194400:intron 45.0%
!! ATTACCATAGGATGATGGGC+TGG + chr2_1:10355987-10356006 None:intergenic 45.0%
GTTACAAATGCTGGATGCTG+TGG - chr2_1:10356101-10356120 Msa0194400:CDS 45.0%
! TCCCTACATGCAGGTTGAAA+GGG + chr2_1:10356161-10356180 None:intergenic 45.0%
! ATCCCTACATGCAGGTTGAA+AGG + chr2_1:10356162-10356181 None:intergenic 45.0%
TTCAACCTGCATGTAGGGAT+AGG - chr2_1:10356162-10356181 Msa0194400:CDS 45.0%
CTGCATGTAGGGATAGGAAT+GGG - chr2_1:10356168-10356187 Msa0194400:CDS 45.0%
GCATTTCATCCAACTGAAGC+TGG - chr2_1:10356206-10356225 Msa0194400:CDS 45.0%
GTGGAGGAGGAAGAGATATG+GGG + chr2_1:10354025-10354044 None:intergenic 50.0%
GGTGGAGGAGGAAGAGATAT+GGG + chr2_1:10354026-10354045 None:intergenic 50.0%
TGGTGGAGGAGGAAGAGATA+TGG + chr2_1:10354027-10354046 None:intergenic 50.0%
GTGTGAAAGAGAGAGGGAGT+TGG + chr2_1:10354088-10354107 None:intergenic 50.0%
GGGTGTGTGTGAAAGAGAGA+GGG + chr2_1:10354094-10354113 None:intergenic 50.0%
CCGTTGGAAAACCTTCCAGT+TGG + chr2_1:10354366-10354385 None:intergenic 50.0%
GCTGAGCAATTGGGGTTCAA+TGG - chr2_1:10355092-10355111 Msa0194400:CDS 50.0%
CCTCTAGCTGATGCATAGGA+AGG + chr2_1:10355125-10355144 None:intergenic 50.0%
CCTTCCTATGCATCAGCTAG+AGG - chr2_1:10355122-10355141 Msa0194400:CDS 50.0%
AGAGGCCGACAAATACTCAG+AGG - chr2_1:10355140-10355159 Msa0194400:CDS 50.0%
CCAATTGGGACACTGTCCTT+TGG + chr2_1:10355360-10355379 None:intergenic 50.0%
CCAAAGGACAGTGTCCCAAT+TGG - chr2_1:10355357-10355376 Msa0194400:CDS 50.0%
AGGTTGCACCCCAAATGCAT+TGG - chr2_1:10355799-10355818 Msa0194400:intron 50.0%
TTGGCTCAAAACAGCCCAGA+TGG - chr2_1:10355818-10355837 Msa0194400:intron 50.0%
AATGCTGGATGCTGTGGTGT+AGG - chr2_1:10356107-10356126 Msa0194400:CDS 50.0%
TGCCCTTTCAACCTGCATGT+AGG - chr2_1:10356156-10356175 Msa0194400:CDS 50.0%
GCCCTTTCAACCTGCATGTA+GGG - chr2_1:10356157-10356176 Msa0194400:CDS 50.0%
CCATTCCTATCCCTACATGC+AGG + chr2_1:10356170-10356189 None:intergenic 50.0%
CCTGCATGTAGGGATAGGAA+TGG - chr2_1:10356167-10356186 Msa0194400:CDS 50.0%
GGGGTGTGTGTGAAAGAGAG+AGG + chr2_1:10354095-10354114 None:intergenic 55.0%
TCGGCCTCTAGCTGATGCAT+AGG + chr2_1:10355129-10355148 None:intergenic 55.0%
! GACTTTCCTGGCGGACCAAC+TGG - chr2_1:10354348-10354367 Msa0194400:CDS 60.0%
! TTCCTGGCGGACCAACTGGA+AGG - chr2_1:10354352-10354371 Msa0194400:CDS 60.0%
AACCTTCCAGTTGGTCCGCC+AGG + chr2_1:10354357-10354376 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 10353949 10356545 10353949 ID=Msa0194400;Name=Msa0194400
chr2_1 mRNA 10353949 10356545 10353949 ID=Msa0194400-mRNA-1;Parent=Msa0194400;Name=Msa0194400-mRNA-1;_AED=0.07;_eAED=0.07;_QI=213|1|1|1|1|1|5|229|365
chr2_1 exon 10353949 10354401 10353949 ID=Msa0194400-mRNA-1:exon:4675;Parent=Msa0194400-mRNA-1
chr2_1 exon 10354493 10354748 10354493 ID=Msa0194400-mRNA-1:exon:4674;Parent=Msa0194400-mRNA-1
chr2_1 exon 10354930 10355175 10354930 ID=Msa0194400-mRNA-1:exon:4673;Parent=Msa0194400-mRNA-1
chr2_1 exon 10355277 10355401 10355277 ID=Msa0194400-mRNA-1:exon:4672;Parent=Msa0194400-mRNA-1
chr2_1 exon 10356086 10356545 10356086 ID=Msa0194400-mRNA-1:exon:4671;Parent=Msa0194400-mRNA-1
chr2_1 five_prime_UTR 10356333 10356545 10356333 ID=Msa0194400-mRNA-1:five_prime_utr;Parent=Msa0194400-mRNA-1
chr2_1 CDS 10356086 10356332 10356086 ID=Msa0194400-mRNA-1:cds;Parent=Msa0194400-mRNA-1
chr2_1 CDS 10355277 10355401 10355277 ID=Msa0194400-mRNA-1:cds;Parent=Msa0194400-mRNA-1
chr2_1 CDS 10354930 10355175 10354930 ID=Msa0194400-mRNA-1:cds;Parent=Msa0194400-mRNA-1
chr2_1 CDS 10354493 10354748 10354493 ID=Msa0194400-mRNA-1:cds;Parent=Msa0194400-mRNA-1
chr2_1 CDS 10354178 10354401 10354178 ID=Msa0194400-mRNA-1:cds;Parent=Msa0194400-mRNA-1
chr2_1 three_prime_UTR 10353949 10354177 10353949 ID=Msa0194400-mRNA-1:three_prime_utr;Parent=Msa0194400-mRNA-1
Gene Sequence

>Msa0194400

ATGGCATTTTGGGACCTCTCTATGATTAATATAGGGATAGTAGTGTTGGTTTTGAGTTTGTGGAGTGGAATTGGAGTAGCACAACAAGTACCTTGCTATTTTATTTTTGGAGACTCTTTGGTGGATAATGGTAACAACAACCAACTCACTTCTATAGCAAAAGCTAATTACTTACCTTATGGAATTGACTTTCCTGGCGGACCAACTGGAAGGTTTTCCAACGGCAAAACCACTGTTGATGTCATTGCTGAGCAATTGGGGTTCAATGGTTATATACCTTCCTATGCATCAGCTAGAGGCCGACAAATACTCAGAGGAGTCAATTATGCTTCAGCAGCTGCTGGAATCAGAGAAGAAACTGGACAACAATTGGGACAACGAATTAGTTTTAGAGGGCAAGTGCAAAATTACCAAAGGACAGTGTCCCAATTGGTAAATTATTTTGGAGATGAGAACACTGCTGCAAATTATCTTAGCAAGTGCATTTATACAATTGGATTGGGTAGCAATGATTACCTTAACAATTATTTCATGCCTACAATCTATTCTACCAGTAGACAATTCACACCACAACAATATGCTAATGTCCTTCTTCAAGCATATGCTCAGCAACTCAGGATTTTATACAATTATGGGGCAAGGAAAATGGCGTTATTTGGAGTTGGTCAAATAGGTTGCACCCCAAATGCATTGGCTCAAAACAGCCCAGATGGTAGAACATGTGTAGCAAGAATCAATTCTGCAAATCAATTATTCAACAATGGATTAAGATCTCTTGTTGATCAACTCAATAACCAACTTCCTGATGCAAGATTCATCTATGTAAATGTTTATGGTATCTTTCAAGACATCATAACCAGCCCATCATCCTATGGTTTTAGAGTTACAAATGCTGGATGCTGTGGTGTAGGAAGAAACAATGGTCAAATTACATGTTTGCCCTTTCAACCTGCATGTAGGGATAGGAATGGGTTCTTATTTTGGGATGCATTTCATCCAACTGAAGCTGGAAATAGTGTTATTGGTAGAAGAGCTTACAATGCTCAATCTGCATCAGATGCTTACCCTATTGATATTAATCGTTTAGCTCAAATCTAA
Protein sequence

>Msa0194400

MAFWDLSMINIGIVVLVLSLWSGIGVAQQVPCYFIFGDSLVDNGNNNQLTSIAKANYLPYGIDFPGGPTGRFSNGKTTVDVIAEQLGFNGYIPSYASARGRQILRGVNYASAAAGIREETGQQLGQRISFRGQVQNYQRTVSQLVNYFGDENTAANYLSKCIYTIGLGSNDYLNNYFMPTIYSTSRQFTPQQYANVLLQAYAQQLRILYNYGARKMALFGVGQIGCTPNALAQNSPDGRTCVARINSANQLFNNGLRSLVDQLNNQLPDARFIYVNVYGIFQDIITSPSSYGFRVTNAGCCGVGRNNGQITCLPFQPACRDRNGFLFWDAFHPTEAGNSVIGRRAYNAQSASDAYPIDINRLAQI*