AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1149960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1149960 MtrunA17_Chr7g0239041 91.603 131 6 1 1 126 62 192 4.68e-70 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1149960 AT5G02160.1 84.810 79 12 0 48 126 50 128 3.36e-46 146

Find 51 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACACTAAACTCTTATT+TGG 0.131404 7_4:-32636061 Msa1149960:CDS
TGAACATTCTTTGCTTAAAC+TGG 0.225387 7_4:+32634102 None:intergenic
CTCACTTTCTTCAATTTGTT+TGG 0.288692 7_4:-32636158 Msa1149960:five_prime_UTR
TATCTTGTTGCTGGTGCTAT+TGG 0.295597 7_4:-32635941 Msa1149960:CDS
GGCACTATTTATCTTGTTGC+TGG 0.299445 7_4:-32635950 Msa1149960:CDS
AAATATAATTTAAATTGTAT+AGG 0.307427 7_4:-32634383 Msa1149960:three_prime_UTR
AATATAATTTAAATTGTATA+GGG 0.308865 7_4:-32634382 Msa1149960:three_prime_UTR
GTGATGGAGCAGGGTTTGTT+AGG 0.314720 7_4:-32634588 Msa1149960:CDS
GATTATTTGTGGCATGTTCT+AGG 0.320375 7_4:-32634062 Msa1149960:three_prime_UTR
AAATAAGAGTTTAGTGTTGT+TGG 0.324277 7_4:+32636063 None:intergenic
AGTTTCTCGTGGACCCTATT+CGG 0.356366 7_4:-32634419 Msa1149960:three_prime_UTR
GCTATTGGAATTGCTCTTGT+TGG 0.368974 7_4:-32635926 Msa1149960:CDS
CTTCATAATGTAAGGAGATA+AGG 0.378082 7_4:-32634238 Msa1149960:three_prime_UTR
TTGTGCTCGTTGTGATGGTT+TGG 0.405035 7_4:-32634509 Msa1149960:CDS
AGCATTTCTATTTGTCAACT+TGG 0.409660 7_4:+32634476 None:intergenic
GTGATGAACTTCATAATGTA+AGG 0.413154 7_4:-32634246 Msa1149960:three_prime_UTR
GTTATCCAGCTGATTATTTG+TGG 0.416801 7_4:-32634073 Msa1149960:three_prime_UTR
AACCCTGCTCCATCACAATC+AGG 0.417979 7_4:+32634595 None:intergenic
ATTGGGAATGATTGTGTTCA+AGG 0.420585 7_4:+32636096 None:intergenic
TCAGTTGTTGTTTCAGCAGT+TGG 0.426749 7_4:-32635989 Msa1149960:CDS
AGGGTCCACGAGAAACTTAT+AGG 0.432575 7_4:+32634425 None:intergenic
TGTGCTCGTTGTGATGGTTT+GGG 0.434742 7_4:-32634508 Msa1149960:CDS
TTCATAATGTAAGGAGATAA+GGG 0.439777 7_4:-32634237 Msa1149960:three_prime_UTR
TTGTTATGTTATTGTTGGAT+TGG 0.441088 7_4:+32636216 None:intergenic
AACACTAAACTCTTATTTGG+AGG 0.444395 7_4:-32636058 Msa1149960:CDS
TCTTTACGTGAGAAGATGAT+AGG 0.453999 7_4:+32635893 None:intergenic
CAGGGTTTGTTAGGAAAGGT+GGG 0.459410 7_4:-32634579 Msa1149960:CDS
GCAGGGTTTGTTAGGAAAGG+TGG 0.460825 7_4:-32634580 Msa1149960:CDS
ACAATACATTACACATGAAA+GGG 0.477825 7_4:+32634312 None:intergenic
GAGAGCAAATGCAGCAAGAA+AGG 0.478276 7_4:-32634548 Msa1149960:CDS
GTTGTTGGAAATTGTAACAT+TGG 0.483393 7_4:+32636078 None:intergenic
GGGTCCACGAGAAACTTATA+GGG 0.498250 7_4:+32634426 None:intergenic
TACAATACATTACACATGAA+AGG 0.501899 7_4:+32634311 None:intergenic
TGCCCTGATTGTGATGGAGC+AGG 0.517909 7_4:-32634598 Msa1149960:CDS
TTGTTGGAAATTGTAACATT+GGG 0.522805 7_4:+32636079 None:intergenic
ATTGTTTGTGCTCGTTGTGA+TGG 0.530028 7_4:-32634514 Msa1149960:CDS
AGGGCGCGTAAGAAACTCAT+AGG 0.532431 7_4:-32634363 Msa1149960:three_prime_UTR
ACATGCCACAAATAATCAGC+TGG 0.538213 7_4:+32634068 None:intergenic
GGAGCAGGGTTTGTTAGGAA+AGG 0.545979 7_4:-32634583 Msa1149960:CDS
CGCGTAAGAAACTCATAGGA+TGG 0.547529 7_4:-32634359 Msa1149960:three_prime_UTR
AATGATTGTGTTCAAGGTCA+TGG 0.560862 7_4:+32636102 None:intergenic
CCCACCCTATAAGTTTCTCG+TGG 0.562844 7_4:-32634430 Msa1149960:three_prime_UTR
TTATAGGGTGGGAAAAGTAA+TGG 0.563130 7_4:+32634441 None:intergenic
GTTGGAGATGTATCTTCTGA+TGG 0.593310 7_4:-32635971 Msa1149960:CDS
TCCACGAGAAACTTATAGGG+TGG 0.600618 7_4:+32634429 None:intergenic
ACCCTGCTCCATCACAATCA+GGG 0.608104 7_4:+32634596 None:intergenic
GCCCTGATTGTGATGGAGCA+GGG 0.608764 7_4:-32634597 Msa1149960:CDS
CCACGAGAAACTTATAGGGT+GGG 0.614154 7_4:+32634430 None:intergenic
ATTACATTGTATTAGAAACA+TGG 0.624195 7_4:-32636128 Msa1149960:exon
ATCAGATGCCCTGATTGTGA+TGG 0.647435 7_4:-32634604 Msa1149960:intron
AGGGTTTGTTAGGAAAGGTG+GGG 0.670666 7_4:-32634578 Msa1149960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATAAATATTTATATT+GGG + chr7_4:32635066-32635085 None:intergenic 0.0%
!! AAAATTATAAATATTTATAT+TGG + chr7_4:32635067-32635086 None:intergenic 0.0%
!! AAATTATAAATATTTATATT+GGG + chr7_4:32635066-32635085 None:intergenic 0.0%
!! AAAATTATAAATATTTATAT+TGG + chr7_4:32635067-32635086 None:intergenic 0.0%
!! TAAAAAATAAAATCTGATTT+CGG - chr7_4:32634891-32634910 Msa1149960:intron 10.0%
!! AAAAATAGGTTTATAATTAT+TGG + chr7_4:32635493-32635512 None:intergenic 10.0%
!! TGGAAAAAAAAAAATATATA+TGG + chr7_4:32636182-32636201 None:intergenic 10.0%
!! TAAAAAATAAAATCTGATTT+CGG - chr7_4:32634891-32634910 Msa1149960:intron 10.0%
!! AAAAATAGGTTTATAATTAT+TGG + chr7_4:32635493-32635512 None:intergenic 10.0%
!! TGGAAAAAAAAAAATATATA+TGG + chr7_4:32636182-32636201 None:intergenic 10.0%
!! AATAATAATCTCAATAATAG+TGG - chr7_4:32635091-32635110 Msa1149960:intron 15.0%
!!! TAATTATAAACCTATTTTTG+TGG - chr7_4:32635494-32635513 Msa1149960:intron 15.0%
!! AATAATAATCTCAATAATAG+TGG - chr7_4:32635091-32635110 Msa1149960:intron 15.0%
!!! TAATTATAAACCTATTTTTG+TGG - chr7_4:32635494-32635513 Msa1149960:intron 15.0%
!!! TGTTTTTGTTATGTTATTGT+TGG + chr7_4:32634093-32634112 None:intergenic 20.0%
!! ATTACATTGTATTAGAAACA+TGG - chr7_4:32634173-32634192 Msa1149960:three_prime_UTR 20.0%
!!! TTCTAAGAGAAATTTTGTAT+AGG - chr7_4:32634613-32634632 Msa1149960:intron 20.0%
!!! AAATTTTGTATAGGCATTTT+TGG - chr7_4:32634622-32634641 Msa1149960:intron 20.0%
!! GATAATGCATAATATATGTA+AGG - chr7_4:32634986-32635005 Msa1149960:intron 20.0%
!!! AAAAGAATTGTTTTTTTTCG+TGG + chr7_4:32635033-32635052 None:intergenic 20.0%
!! AATCTTAAAACCACAAAAAT+AGG + chr7_4:32635507-32635526 None:intergenic 20.0%
!!! TTTTTTCATTGATTCTTGTT+TGG - chr7_4:32635596-32635615 Msa1149960:intron 20.0%
!!! ATAGAAATGCTTTTTTCTTT+TGG - chr7_4:32635837-32635856 Msa1149960:intron 20.0%
!!! TAGATTTTAAAATCCGAATA+GGG + chr7_4:32635898-32635917 None:intergenic 20.0%
!!! TTAGATTTTAAAATCCGAAT+AGG + chr7_4:32635899-32635918 None:intergenic 20.0%
!!! TGTTTTTGTTATGTTATTGT+TGG + chr7_4:32634093-32634112 None:intergenic 20.0%
!! ATTACATTGTATTAGAAACA+TGG - chr7_4:32634173-32634192 Msa1149960:three_prime_UTR 20.0%
!!! TTCTAAGAGAAATTTTGTAT+AGG - chr7_4:32634613-32634632 Msa1149960:intron 20.0%
!!! AAATTTTGTATAGGCATTTT+TGG - chr7_4:32634622-32634641 Msa1149960:intron 20.0%
!! GATAATGCATAATATATGTA+AGG - chr7_4:32634986-32635005 Msa1149960:intron 20.0%
!!! AAAAGAATTGTTTTTTTTCG+TGG + chr7_4:32635033-32635052 None:intergenic 20.0%
!! AATCTTAAAACCACAAAAAT+AGG + chr7_4:32635507-32635526 None:intergenic 20.0%
!!! TTTTTTCATTGATTCTTGTT+TGG - chr7_4:32635596-32635615 Msa1149960:intron 20.0%
!!! ATAGAAATGCTTTTTTCTTT+TGG - chr7_4:32635837-32635856 Msa1149960:intron 20.0%
!!! TAGATTTTAAAATCCGAATA+GGG + chr7_4:32635898-32635917 None:intergenic 20.0%
!!! TTAGATTTTAAAATCCGAAT+AGG + chr7_4:32635899-32635918 None:intergenic 20.0%
! TTGTTATGTTATTGTTGGAT+TGG + chr7_4:32634088-32634107 None:intergenic 25.0%
! TTGTTGGAAATTGTAACATT+GGG + chr7_4:32634225-32634244 None:intergenic 25.0%
! AAATAAGAGTTTAGTGTTGT+TGG + chr7_4:32634241-32634260 None:intergenic 25.0%
! AACAACACTAAACTCTTATT+TGG - chr7_4:32634240-32634259 Msa1149960:three_prime_UTR 25.0%
!!! CATCGTTATTTTCATTTTCA+TGG - chr7_4:32634445-32634464 Msa1149960:three_prime_UTR 25.0%
!! ATTCTGAGAAAATTAGAGAT+AGG + chr7_4:32634709-32634728 None:intergenic 25.0%
! GGTAAAACTATACTTATCTA+TGG + chr7_4:32634825-32634844 None:intergenic 25.0%
!!! TAAGTATAGTTTTACCTTGA+CGG - chr7_4:32634829-32634848 Msa1149960:intron 25.0%
!!! ACCTAGTTTTTTAATCTACT+TGG - chr7_4:32635535-32635554 Msa1149960:intron 25.0%
!!! CCTAGTTTTTTAATCTACTT+GGG - chr7_4:32635536-32635555 Msa1149960:intron 25.0%
! TGCACTTGAAATAAAAATCT+AGG + chr7_4:32635572-32635591 None:intergenic 25.0%
! ACATCATTAACAAACAACAA+AGG + chr7_4:32635660-32635679 None:intergenic 25.0%
! ACAATACATTACACATGAAA+GGG + chr7_4:32635992-32636011 None:intergenic 25.0%
! TACAATACATTACACATGAA+AGG + chr7_4:32635993-32636012 None:intergenic 25.0%
! TTCATAATGTAAGGAGATAA+GGG - chr7_4:32636064-32636083 Msa1149960:CDS 25.0%
! TTGTTATGTTATTGTTGGAT+TGG + chr7_4:32634088-32634107 None:intergenic 25.0%
! TTGTTGGAAATTGTAACATT+GGG + chr7_4:32634225-32634244 None:intergenic 25.0%
! AAATAAGAGTTTAGTGTTGT+TGG + chr7_4:32634241-32634260 None:intergenic 25.0%
! AACAACACTAAACTCTTATT+TGG - chr7_4:32634240-32634259 Msa1149960:three_prime_UTR 25.0%
!!! CATCGTTATTTTCATTTTCA+TGG - chr7_4:32634445-32634464 Msa1149960:three_prime_UTR 25.0%
!! ATTCTGAGAAAATTAGAGAT+AGG + chr7_4:32634709-32634728 None:intergenic 25.0%
! GGTAAAACTATACTTATCTA+TGG + chr7_4:32634825-32634844 None:intergenic 25.0%
!!! TAAGTATAGTTTTACCTTGA+CGG - chr7_4:32634829-32634848 Msa1149960:intron 25.0%
!!! ACCTAGTTTTTTAATCTACT+TGG - chr7_4:32635535-32635554 Msa1149960:intron 25.0%
!!! CCTAGTTTTTTAATCTACTT+GGG - chr7_4:32635536-32635555 Msa1149960:intron 25.0%
! TGCACTTGAAATAAAAATCT+AGG + chr7_4:32635572-32635591 None:intergenic 25.0%
! ACATCATTAACAAACAACAA+AGG + chr7_4:32635660-32635679 None:intergenic 25.0%
! ACAATACATTACACATGAAA+GGG + chr7_4:32635992-32636011 None:intergenic 25.0%
! TACAATACATTACACATGAA+AGG + chr7_4:32635993-32636012 None:intergenic 25.0%
! TTCATAATGTAAGGAGATAA+GGG - chr7_4:32636064-32636083 Msa1149960:CDS 25.0%
! CTCACTTTCTTCAATTTGTT+TGG - chr7_4:32634143-32634162 Msa1149960:three_prime_UTR 30.0%
GTTGTTGGAAATTGTAACAT+TGG + chr7_4:32634226-32634245 None:intergenic 30.0%
! AACACTAAACTCTTATTTGG+AGG - chr7_4:32634243-32634262 Msa1149960:three_prime_UTR 30.0%
TGAACAAATTACACTTGCAA+TGG - chr7_4:32634555-32634574 Msa1149960:CDS 30.0%
TCAATAAAAAACATCCGTCA+AGG + chr7_4:32634846-32634865 None:intergenic 30.0%
TGCATAATATATGTAAGGTC+CGG - chr7_4:32634991-32635010 Msa1149960:intron 30.0%
TCAATAATAGTGGTTGAAAC+TGG - chr7_4:32635101-32635120 Msa1149960:intron 30.0%
TGATAATTGGCAATGATGAT+TGG - chr7_4:32635194-32635213 Msa1149960:intron 30.0%
!!! GTGGTCATAGTAGTTTTAAA+TGG - chr7_4:32635286-32635305 Msa1149960:intron 30.0%
CCCAAGTAGATTAAAAAACT+AGG + chr7_4:32635539-32635558 None:intergenic 30.0%
!! TCATTGATTCTTGTTTGGAA+TGG - chr7_4:32635601-32635620 Msa1149960:intron 30.0%
AGCATTTCTATTTGTCAACT+TGG + chr7_4:32635828-32635847 None:intergenic 30.0%
GTGATGAACTTCATAATGTA+AGG - chr7_4:32636055-32636074 Msa1149960:CDS 30.0%
CTTCATAATGTAAGGAGATA+AGG - chr7_4:32636063-32636082 Msa1149960:CDS 30.0%
TGAACATTCTTTGCTTAAAC+TGG + chr7_4:32636202-32636221 None:intergenic 30.0%
! CTCACTTTCTTCAATTTGTT+TGG - chr7_4:32634143-32634162 Msa1149960:three_prime_UTR 30.0%
GTTGTTGGAAATTGTAACAT+TGG + chr7_4:32634226-32634245 None:intergenic 30.0%
! AACACTAAACTCTTATTTGG+AGG - chr7_4:32634243-32634262 Msa1149960:three_prime_UTR 30.0%
TGAACAAATTACACTTGCAA+TGG - chr7_4:32634555-32634574 Msa1149960:CDS 30.0%
TCAATAAAAAACATCCGTCA+AGG + chr7_4:32634846-32634865 None:intergenic 30.0%
TGCATAATATATGTAAGGTC+CGG - chr7_4:32634991-32635010 Msa1149960:intron 30.0%
TCAATAATAGTGGTTGAAAC+TGG - chr7_4:32635101-32635120 Msa1149960:intron 30.0%
TGATAATTGGCAATGATGAT+TGG - chr7_4:32635194-32635213 Msa1149960:intron 30.0%
!!! GTGGTCATAGTAGTTTTAAA+TGG - chr7_4:32635286-32635305 Msa1149960:intron 30.0%
CCCAAGTAGATTAAAAAACT+AGG + chr7_4:32635539-32635558 None:intergenic 30.0%
!! TCATTGATTCTTGTTTGGAA+TGG - chr7_4:32635601-32635620 Msa1149960:intron 30.0%
AGCATTTCTATTTGTCAACT+TGG + chr7_4:32635828-32635847 None:intergenic 30.0%
GTGATGAACTTCATAATGTA+AGG - chr7_4:32636055-32636074 Msa1149960:CDS 30.0%
CTTCATAATGTAAGGAGATA+AGG - chr7_4:32636063-32636082 Msa1149960:CDS 30.0%
TGAACATTCTTTGCTTAAAC+TGG + chr7_4:32636202-32636221 None:intergenic 30.0%
AATGATTGTGTTCAAGGTCA+TGG + chr7_4:32634202-32634221 None:intergenic 35.0%
ATTGGGAATGATTGTGTTCA+AGG + chr7_4:32634208-32634227 None:intergenic 35.0%
TCTTTACGTGAGAAGATGAT+AGG + chr7_4:32634411-32634430 None:intergenic 35.0%
TTGAACTTTGCTCAGTTGAT+AGG - chr7_4:32634963-32634982 Msa1149960:intron 35.0%
! TGAACTTTGCTCAGTTGATA+GGG - chr7_4:32634964-32634983 Msa1149960:intron 35.0%
GCATAATATATGTAAGGTCC+GGG - chr7_4:32634992-32635011 Msa1149960:intron 35.0%
CATAATATATGTAAGGTCCG+GGG - chr7_4:32634993-32635012 Msa1149960:intron 35.0%
ACAATGATCGGAGTGATAAT+TGG - chr7_4:32635181-32635200 Msa1149960:intron 35.0%
!! GTTTTAAATGGTGATCACAG+TGG - chr7_4:32635298-32635317 Msa1149960:intron 35.0%
TAGAGGTGATCTAAGAAAGT+TGG - chr7_4:32635364-32635383 Msa1149960:intron 35.0%
ATCTAAGAAAGTTGGAGTGA+TGG - chr7_4:32635372-32635391 Msa1149960:intron 35.0%
TTATAGGGTGGGAAAAGTAA+TGG + chr7_4:32635863-32635882 None:intergenic 35.0%
TCATAGGATGGAAAAAGAAG+CGG - chr7_4:32635954-32635973 Msa1149960:CDS 35.0%
GTTATCCAGCTGATTATTTG+TGG - chr7_4:32636228-32636247 Msa1149960:five_prime_UTR 35.0%
GATTATTTGTGGCATGTTCT+AGG - chr7_4:32636239-32636258 Msa1149960:five_prime_UTR 35.0%
AATGATTGTGTTCAAGGTCA+TGG + chr7_4:32634202-32634221 None:intergenic 35.0%
ATTGGGAATGATTGTGTTCA+AGG + chr7_4:32634208-32634227 None:intergenic 35.0%
TCTTTACGTGAGAAGATGAT+AGG + chr7_4:32634411-32634430 None:intergenic 35.0%
TTGAACTTTGCTCAGTTGAT+AGG - chr7_4:32634963-32634982 Msa1149960:intron 35.0%
! TGAACTTTGCTCAGTTGATA+GGG - chr7_4:32634964-32634983 Msa1149960:intron 35.0%
GCATAATATATGTAAGGTCC+GGG - chr7_4:32634992-32635011 Msa1149960:intron 35.0%
CATAATATATGTAAGGTCCG+GGG - chr7_4:32634993-32635012 Msa1149960:intron 35.0%
ACAATGATCGGAGTGATAAT+TGG - chr7_4:32635181-32635200 Msa1149960:intron 35.0%
!! GTTTTAAATGGTGATCACAG+TGG - chr7_4:32635298-32635317 Msa1149960:intron 35.0%
TAGAGGTGATCTAAGAAAGT+TGG - chr7_4:32635364-32635383 Msa1149960:intron 35.0%
ATCTAAGAAAGTTGGAGTGA+TGG - chr7_4:32635372-32635391 Msa1149960:intron 35.0%
TTATAGGGTGGGAAAAGTAA+TGG + chr7_4:32635863-32635882 None:intergenic 35.0%
TCATAGGATGGAAAAAGAAG+CGG - chr7_4:32635954-32635973 Msa1149960:CDS 35.0%
GTTATCCAGCTGATTATTTG+TGG - chr7_4:32636228-32636247 Msa1149960:five_prime_UTR 35.0%
GATTATTTGTGGCATGTTCT+AGG - chr7_4:32636239-32636258 Msa1149960:five_prime_UTR 35.0%
!! TCAGTTGTTGTTTCAGCAGT+TGG - chr7_4:32634312-32634331 Msa1149960:three_prime_UTR 40.0%
GTTGGAGATGTATCTTCTGA+TGG - chr7_4:32634330-32634349 Msa1149960:three_prime_UTR 40.0%
GGCACTATTTATCTTGTTGC+TGG - chr7_4:32634351-32634370 Msa1149960:three_prime_UTR 40.0%
!! TATCTTGTTGCTGGTGCTAT+TGG - chr7_4:32634360-32634379 Msa1149960:three_prime_UTR 40.0%
GCTATTGGAATTGCTCTTGT+TGG - chr7_4:32634375-32634394 Msa1149960:three_prime_UTR 40.0%
!!! TGTTTTTTTTCGTGGTAGCC+AGG + chr7_4:32635025-32635044 None:intergenic 40.0%
TGGTTGAAACTGGTTGTTGT+TGG - chr7_4:32635111-32635130 Msa1149960:intron 40.0%
! TTGAAACTGGTTGTTGTTGG+AGG - chr7_4:32635114-32635133 Msa1149960:intron 40.0%
CAAACAGTGGCTACAATGAT+CGG - chr7_4:32635169-32635188 Msa1149960:intron 40.0%
GCAACGATCAGAATGATGAT+TGG - chr7_4:32635230-32635249 Msa1149960:intron 40.0%
ACGATCAGAATGATGATTGG+TGG - chr7_4:32635233-32635252 Msa1149960:intron 40.0%
! AGAATGATGATTGGTGGACA+AGG - chr7_4:32635239-32635258 Msa1149960:intron 40.0%
! GAATGATGATTGGTGGACAA+GGG - chr7_4:32635240-32635259 Msa1149960:intron 40.0%
AGTGGTGATCAGAGTATATG+TGG - chr7_4:32635316-32635335 Msa1149960:intron 40.0%
!! GAGTATATGTGGTGTCATAG+TGG - chr7_4:32635327-32635346 Msa1149960:intron 40.0%
!! TATATGTGGTGTCATAGTGG+TGG - chr7_4:32635330-32635349 Msa1149960:intron 40.0%
AACGTTTCATGTTACCACCA+AGG + chr7_4:32635461-32635480 None:intergenic 40.0%
ATTGTTTGTGCTCGTTGTGA+TGG - chr7_4:32635787-32635806 Msa1149960:intron 40.0%
ACATGCCACAAATAATCAGC+TGG + chr7_4:32636236-32636255 None:intergenic 40.0%
!! TCAGTTGTTGTTTCAGCAGT+TGG - chr7_4:32634312-32634331 Msa1149960:three_prime_UTR 40.0%
GTTGGAGATGTATCTTCTGA+TGG - chr7_4:32634330-32634349 Msa1149960:three_prime_UTR 40.0%
GGCACTATTTATCTTGTTGC+TGG - chr7_4:32634351-32634370 Msa1149960:three_prime_UTR 40.0%
!! TATCTTGTTGCTGGTGCTAT+TGG - chr7_4:32634360-32634379 Msa1149960:three_prime_UTR 40.0%
GCTATTGGAATTGCTCTTGT+TGG - chr7_4:32634375-32634394 Msa1149960:three_prime_UTR 40.0%
!!! TGTTTTTTTTCGTGGTAGCC+AGG + chr7_4:32635025-32635044 None:intergenic 40.0%
TGGTTGAAACTGGTTGTTGT+TGG - chr7_4:32635111-32635130 Msa1149960:intron 40.0%
! TTGAAACTGGTTGTTGTTGG+AGG - chr7_4:32635114-32635133 Msa1149960:intron 40.0%
CAAACAGTGGCTACAATGAT+CGG - chr7_4:32635169-32635188 Msa1149960:intron 40.0%
GCAACGATCAGAATGATGAT+TGG - chr7_4:32635230-32635249 Msa1149960:intron 40.0%
ACGATCAGAATGATGATTGG+TGG - chr7_4:32635233-32635252 Msa1149960:intron 40.0%
! AGAATGATGATTGGTGGACA+AGG - chr7_4:32635239-32635258 Msa1149960:intron 40.0%
! GAATGATGATTGGTGGACAA+GGG - chr7_4:32635240-32635259 Msa1149960:intron 40.0%
AGTGGTGATCAGAGTATATG+TGG - chr7_4:32635316-32635335 Msa1149960:intron 40.0%
!! GAGTATATGTGGTGTCATAG+TGG - chr7_4:32635327-32635346 Msa1149960:intron 40.0%
!! TATATGTGGTGTCATAGTGG+TGG - chr7_4:32635330-32635349 Msa1149960:intron 40.0%
AACGTTTCATGTTACCACCA+AGG + chr7_4:32635461-32635480 None:intergenic 40.0%
ATTGTTTGTGCTCGTTGTGA+TGG - chr7_4:32635787-32635806 Msa1149960:intron 40.0%
ACATGCCACAAATAATCAGC+TGG + chr7_4:32636236-32636255 None:intergenic 40.0%
! AAACTGGTTGTTGTTGGAGG+AGG - chr7_4:32635117-32635136 Msa1149960:intron 45.0%
!! AGGAGGTGTTGGACAACTAT+CGG - chr7_4:32635134-32635153 Msa1149960:intron 45.0%
GAGTGGTGAATAGCAAACAG+TGG - chr7_4:32635156-32635175 Msa1149960:intron 45.0%
! AATGATGATTGGCTGACAGG+TGG - chr7_4:32635205-32635224 Msa1149960:intron 45.0%
! CTATGACCACTAATCGACTC+CGG + chr7_4:32635276-32635295 None:intergenic 45.0%
AGTTGGAGTGATGGTTGACT+TGG - chr7_4:32635381-32635400 Msa1149960:intron 45.0%
!! GTCTTAGTGTTGGTCGTTGA+TGG - chr7_4:32635427-32635446 Msa1149960:intron 45.0%
ATCAGATGCCCTGATTGTGA+TGG - chr7_4:32635697-32635716 Msa1149960:intron 45.0%
!! CAGGGTTTGTTAGGAAAGGT+GGG - chr7_4:32635722-32635741 Msa1149960:intron 45.0%
!! AGGGTTTGTTAGGAAAGGTG+GGG - chr7_4:32635723-32635742 Msa1149960:intron 45.0%
GAGAGCAAATGCAGCAAGAA+AGG - chr7_4:32635753-32635772 Msa1149960:intron 45.0%
TTGTGCTCGTTGTGATGGTT+TGG - chr7_4:32635792-32635811 Msa1149960:intron 45.0%
TGTGCTCGTTGTGATGGTTT+GGG - chr7_4:32635793-32635812 Msa1149960:intron 45.0%
CCACGAGAAACTTATAGGGT+GGG + chr7_4:32635874-32635893 None:intergenic 45.0%
TCCACGAGAAACTTATAGGG+TGG + chr7_4:32635875-32635894 None:intergenic 45.0%
GGGTCCACGAGAAACTTATA+GGG + chr7_4:32635878-32635897 None:intergenic 45.0%
AGGGTCCACGAGAAACTTAT+AGG + chr7_4:32635879-32635898 None:intergenic 45.0%
AGTTTCTCGTGGACCCTATT+CGG - chr7_4:32635882-32635901 Msa1149960:intron 45.0%
CGCGTAAGAAACTCATAGGA+TGG - chr7_4:32635942-32635961 Msa1149960:CDS 45.0%
! AAACTGGTTGTTGTTGGAGG+AGG - chr7_4:32635117-32635136 Msa1149960:intron 45.0%
!! AGGAGGTGTTGGACAACTAT+CGG - chr7_4:32635134-32635153 Msa1149960:intron 45.0%
GAGTGGTGAATAGCAAACAG+TGG - chr7_4:32635156-32635175 Msa1149960:intron 45.0%
! AATGATGATTGGCTGACAGG+TGG - chr7_4:32635205-32635224 Msa1149960:intron 45.0%
! CTATGACCACTAATCGACTC+CGG + chr7_4:32635276-32635295 None:intergenic 45.0%
AGTTGGAGTGATGGTTGACT+TGG - chr7_4:32635381-32635400 Msa1149960:intron 45.0%
!! GTCTTAGTGTTGGTCGTTGA+TGG - chr7_4:32635427-32635446 Msa1149960:intron 45.0%
ATCAGATGCCCTGATTGTGA+TGG - chr7_4:32635697-32635716 Msa1149960:intron 45.0%
!! CAGGGTTTGTTAGGAAAGGT+GGG - chr7_4:32635722-32635741 Msa1149960:intron 45.0%
!! AGGGTTTGTTAGGAAAGGTG+GGG - chr7_4:32635723-32635742 Msa1149960:intron 45.0%
GAGAGCAAATGCAGCAAGAA+AGG - chr7_4:32635753-32635772 Msa1149960:intron 45.0%
TTGTGCTCGTTGTGATGGTT+TGG - chr7_4:32635792-32635811 Msa1149960:intron 45.0%
TGTGCTCGTTGTGATGGTTT+GGG - chr7_4:32635793-32635812 Msa1149960:intron 45.0%
CCACGAGAAACTTATAGGGT+GGG + chr7_4:32635874-32635893 None:intergenic 45.0%
TCCACGAGAAACTTATAGGG+TGG + chr7_4:32635875-32635894 None:intergenic 45.0%
GGGTCCACGAGAAACTTATA+GGG + chr7_4:32635878-32635897 None:intergenic 45.0%
AGGGTCCACGAGAAACTTAT+AGG + chr7_4:32635879-32635898 None:intergenic 45.0%
AGTTTCTCGTGGACCCTATT+CGG - chr7_4:32635882-32635901 Msa1149960:intron 45.0%
CGCGTAAGAAACTCATAGGA+TGG - chr7_4:32635942-32635961 Msa1149960:CDS 45.0%
!! AAATATAATTTAAATTGTAT+AGG - chr7_4:32635918-32635937 Msa1149960:CDS 5.0%
!! AATATAATTTAAATTGTATA+GGG - chr7_4:32635919-32635938 Msa1149960:CDS 5.0%
!! AAATATAATTTAAATTGTAT+AGG - chr7_4:32635918-32635937 Msa1149960:CDS 5.0%
!! AATATAATTTAAATTGTATA+GGG - chr7_4:32635919-32635938 Msa1149960:CDS 5.0%
! GTTGTTGTTGGAGGAGGTGT+TGG - chr7_4:32635123-32635142 Msa1149960:intron 50.0%
GTGTTGGACAACTATCGGAG+TGG - chr7_4:32635139-32635158 Msa1149960:intron 50.0%
! GGCAATGATGATTGGCTGAC+AGG - chr7_4:32635202-32635221 Msa1149960:intron 50.0%
! TGGTGGACAAGGGATTGCAA+TGG - chr7_4:32635250-32635269 Msa1149960:intron 50.0%
!! TGTGGTGTCATAGTGGTGGT+TGG - chr7_4:32635334-32635353 Msa1149960:intron 50.0%
!! GGAGTGATGGTTGACTTGGT+CGG - chr7_4:32635385-32635404 Msa1149960:intron 50.0%
!! GTTGGTGGTGGTCTTAGTGT+TGG - chr7_4:32635417-32635436 Msa1149960:intron 50.0%
!! CGTTGATGGTCATCGATCCT+TGG - chr7_4:32635441-32635460 Msa1149960:intron 50.0%
TGATGGTCATCGATCCTTGG+TGG - chr7_4:32635444-32635463 Msa1149960:intron 50.0%
ACCCTGCTCCATCACAATCA+GGG + chr7_4:32635708-32635727 None:intergenic 50.0%
AACCCTGCTCCATCACAATC+AGG + chr7_4:32635709-32635728 None:intergenic 50.0%
! GTGATGGAGCAGGGTTTGTT+AGG - chr7_4:32635713-32635732 Msa1149960:intron 50.0%
!! GGAGCAGGGTTTGTTAGGAA+AGG - chr7_4:32635718-32635737 Msa1149960:intron 50.0%
!! GCAGGGTTTGTTAGGAAAGG+TGG - chr7_4:32635721-32635740 Msa1149960:intron 50.0%
CCCACCCTATAAGTTTCTCG+TGG - chr7_4:32635871-32635890 Msa1149960:intron 50.0%
AGGGCGCGTAAGAAACTCAT+AGG - chr7_4:32635938-32635957 Msa1149960:CDS 50.0%
! GTTGTTGTTGGAGGAGGTGT+TGG - chr7_4:32635123-32635142 Msa1149960:intron 50.0%
GTGTTGGACAACTATCGGAG+TGG - chr7_4:32635139-32635158 Msa1149960:intron 50.0%
! GGCAATGATGATTGGCTGAC+AGG - chr7_4:32635202-32635221 Msa1149960:intron 50.0%
! TGGTGGACAAGGGATTGCAA+TGG - chr7_4:32635250-32635269 Msa1149960:intron 50.0%
!! TGTGGTGTCATAGTGGTGGT+TGG - chr7_4:32635334-32635353 Msa1149960:intron 50.0%
!! GGAGTGATGGTTGACTTGGT+CGG - chr7_4:32635385-32635404 Msa1149960:intron 50.0%
!! GTTGGTGGTGGTCTTAGTGT+TGG - chr7_4:32635417-32635436 Msa1149960:intron 50.0%
!! CGTTGATGGTCATCGATCCT+TGG - chr7_4:32635441-32635460 Msa1149960:intron 50.0%
TGATGGTCATCGATCCTTGG+TGG - chr7_4:32635444-32635463 Msa1149960:intron 50.0%
ACCCTGCTCCATCACAATCA+GGG + chr7_4:32635708-32635727 None:intergenic 50.0%
AACCCTGCTCCATCACAATC+AGG + chr7_4:32635709-32635728 None:intergenic 50.0%
! GTGATGGAGCAGGGTTTGTT+AGG - chr7_4:32635713-32635732 Msa1149960:intron 50.0%
!! GGAGCAGGGTTTGTTAGGAA+AGG - chr7_4:32635718-32635737 Msa1149960:intron 50.0%
!! GCAGGGTTTGTTAGGAAAGG+TGG - chr7_4:32635721-32635740 Msa1149960:intron 50.0%
CCCACCCTATAAGTTTCTCG+TGG - chr7_4:32635871-32635890 Msa1149960:intron 50.0%
AGGGCGCGTAAGAAACTCAT+AGG - chr7_4:32635938-32635957 Msa1149960:CDS 50.0%
TAAGGTCCGGGGTTCAAACC+TGG - chr7_4:32635004-32635023 Msa1149960:intron 55.0%
TGGTAGCCAGGTTTGAACCC+CGG + chr7_4:32635013-32635032 None:intergenic 55.0%
GGACAAGGGATTGCAATGGC+CGG - chr7_4:32635254-32635273 Msa1149960:intron 55.0%
CAATGGCCGGAGTCGATTAG+TGG - chr7_4:32635267-32635286 Msa1149960:intron 55.0%
! GGTGTCATAGTGGTGGTTGG+TGG - chr7_4:32635337-32635356 Msa1149960:intron 55.0%
!! GTCATAGTGGTGGTTGGTGG+TGG - chr7_4:32635340-32635359 Msa1149960:intron 55.0%
!! TGGTGGTTGGTGGTGGTTAG+AGG - chr7_4:32635347-32635366 Msa1149960:intron 55.0%
!! GTGATGGTTGACTTGGTCGG+TGG - chr7_4:32635388-32635407 Msa1149960:intron 55.0%
!! TTGACTTGGTCGGTGGTGAG+TGG - chr7_4:32635395-32635414 Msa1149960:intron 55.0%
! TGCCCTGATTGTGATGGAGC+AGG - chr7_4:32635703-32635722 Msa1149960:intron 55.0%
! GCCCTGATTGTGATGGAGCA+GGG - chr7_4:32635704-32635723 Msa1149960:intron 55.0%
TAAGGTCCGGGGTTCAAACC+TGG - chr7_4:32635004-32635023 Msa1149960:intron 55.0%
TGGTAGCCAGGTTTGAACCC+CGG + chr7_4:32635013-32635032 None:intergenic 55.0%
GGACAAGGGATTGCAATGGC+CGG - chr7_4:32635254-32635273 Msa1149960:intron 55.0%
CAATGGCCGGAGTCGATTAG+TGG - chr7_4:32635267-32635286 Msa1149960:intron 55.0%
! GGTGTCATAGTGGTGGTTGG+TGG - chr7_4:32635337-32635356 Msa1149960:intron 55.0%
!! GTCATAGTGGTGGTTGGTGG+TGG - chr7_4:32635340-32635359 Msa1149960:intron 55.0%
!! TGGTGGTTGGTGGTGGTTAG+AGG - chr7_4:32635347-32635366 Msa1149960:intron 55.0%
!! GTGATGGTTGACTTGGTCGG+TGG - chr7_4:32635388-32635407 Msa1149960:intron 55.0%
!! TTGACTTGGTCGGTGGTGAG+TGG - chr7_4:32635395-32635414 Msa1149960:intron 55.0%
! TGCCCTGATTGTGATGGAGC+AGG - chr7_4:32635703-32635722 Msa1149960:intron 55.0%
! GCCCTGATTGTGATGGAGCA+GGG - chr7_4:32635704-32635723 Msa1149960:intron 55.0%
CTTGGTCGGTGGTGAGTGGT+TGG - chr7_4:32635399-32635418 Msa1149960:intron 60.0%
CTTGGTCGGTGGTGAGTGGT+TGG - chr7_4:32635399-32635418 Msa1149960:intron 60.0%
GGTCGGTGGTGAGTGGTTGG+TGG - chr7_4:32635402-32635421 Msa1149960:intron 65.0%
!! CGGTGGTGAGTGGTTGGTGG+TGG - chr7_4:32635405-32635424 Msa1149960:intron 65.0%
GGTCGGTGGTGAGTGGTTGG+TGG - chr7_4:32635402-32635421 Msa1149960:intron 65.0%
!! CGGTGGTGAGTGGTTGGTGG+TGG - chr7_4:32635405-32635424 Msa1149960:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 32634049 32636274 32634049 ID=Msa1149960;Name=Msa1149960
chr7_4 mRNA 32634049 32636274 32634049 ID=Msa1149960-mRNA-1;Parent=Msa1149960;Name=Msa1149960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=143|1|1|1|0|0|2|434|126
chr7_4 exon 32634049 32634621 32634049 ID=Msa1149960-mRNA-1:exon:7777;Parent=Msa1149960-mRNA-1
chr7_4 exon 32635890 32636274 32635890 ID=Msa1149960-mRNA-1:exon:7776;Parent=Msa1149960-mRNA-1
chr7_4 five_prime_UTR 32636132 32636274 32636132 ID=Msa1149960-mRNA-1:five_prime_utr;Parent=Msa1149960-mRNA-1
chr7_4 CDS 32635890 32636131 32635890 ID=Msa1149960-mRNA-1:cds;Parent=Msa1149960-mRNA-1
chr7_4 CDS 32634483 32634621 32634483 ID=Msa1149960-mRNA-1:cds;Parent=Msa1149960-mRNA-1
chr7_4 three_prime_UTR 32634049 32634482 32634049 ID=Msa1149960-mRNA-1:three_prime_utr;Parent=Msa1149960-mRNA-1
Gene Sequence

>Msa1149960

ATGGCATCCATGACCTTGAACACAATCATTCCCAATGTTACAATTTCCAACAACACTAAACTCTTATTTGGAGGCTCAACAAATGTGTCATGTAACAAGATTCATCAGAAGAGATCTTCATCAGTTGTTGTTTCAGCAGTTGGAGATGTATCTTCTGATGGCACTATTTATCTTGTTGCTGGTGCTATTGGAATTGCTCTTGTTGGAACTGCATTTCCTATCATCTTCTCACGTAAAGACACATGCCCTGATTGTGATGGAGCAGGGTTTGTTAGGAAAGGTGGGGTGACATTGAGAGCAAATGCAGCAAGAAAGGATCAAACTCAAATTGTTTGTGCTCGTTGTGATGGTTTGGGAAAACTTAACCAAGTTGACAAATAG

Protein sequence

>Msa1149960

MASMTLNTIIPNVTISNNTKLLFGGSTNVSCNKIHQKRSSSVVVSAVGDVSSDGTIYLVAGAIGIALVGTAFPIIFSRKDTCPDCDGAGFVRKGGVTLRANAARKDQTQIVCARCDGLGKLNQVDK*