AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0121650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121650 MtrunA17_Chr1g0180881 92.281 583 23 1 1 583 1 561 0.0 1092
Msa0121650 MtrunA17_Chr7g0264491 54.332 554 219 8 52 583 16 557 0.0 570
Msa0121650 MtrunA17_Chr3g0145921 34.278 388 250 1 191 578 187 569 8.64e-70 235
Msa0121650 MtrunA17_Chr3g0090001 33.439 314 203 3 267 579 94 402 5.23e-46 167
Msa0121650 MtrunA17_Chr1g0146481 29.630 324 214 3 266 581 232 549 6.12e-44 164
Msa0121650 MtrunA17_Chr4g0021031 31.677 322 205 7 255 567 174 489 6.27e-35 138
Msa0121650 MtrunA17_Chr3g0126401 30.241 291 192 4 283 567 216 501 2.38e-29 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121650 AT2G36990.1 50.280 535 244 7 54 583 30 547 1.21e-163 478
Msa0121650 AT1G08540.1 39.205 352 205 5 218 567 212 556 2.31e-76 253
Msa0121650 AT3G53920.1 28.975 283 200 1 286 567 275 557 5.91e-43 162
Msa0121650 AT5G13730.1 33.684 285 186 1 283 567 122 403 1.75e-40 152
Msa0121650 AT1G64860.1 31.353 303 194 6 274 567 190 487 2.26e-34 137
Msa0121650 AT5G24120.1 33.218 289 186 5 283 567 219 504 5.17e-34 136
Msa0121650 AT5G24120.3 33.218 289 186 5 283 567 219 504 5.17e-34 136
Msa0121650 AT5G24120.2 33.218 289 186 5 283 567 219 504 5.17e-34 136
Msa0121650 AT1G64860.2 28.889 270 179 5 274 534 190 455 3.44e-28 118
Msa0121650 AT3G53920.2 26.471 136 100 0 286 421 275 410 1.18e-18 89.0

Find 145 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAATTATCCTTCTTTCTTT+AGG 0.163412 1_3:+47705217 None:intergenic
CTAAATATTTCTTCGCTTCA+TGG 0.186611 1_3:-47710711 Msa0121650:five_prime_UTR
CCTTCTTGCCAATTCTTCTT+TGG 0.192478 1_3:+47706306 None:intergenic
ACCATTACTTTAGTGTATTA+TGG 0.206770 1_3:-47710624 Msa0121650:five_prime_UTR
TCAGAAATCGGGGAAATATT+TGG 0.212988 1_3:-47705154 Msa0121650:CDS
CCTTCATCTTCTTATACTTC+TGG 0.214913 1_3:-47710511 Msa0121650:intron
ACAAGTCTTCAATCTCAATT+TGG 0.259684 1_3:-47707869 Msa0121650:CDS
AGGTTGCATTTCAGTTTAAA+TGG 0.267428 1_3:-47705011 Msa0121650:three_prime_UTR
ACAAATAAACATCAAATAAA+TGG 0.280499 1_3:-47704780 Msa0121650:three_prime_UTR
ACAGTATTCTGCATAGAAAT+TGG 0.286880 1_3:+47706232 None:intergenic
GCTGAATGGGCTGAGGGTGC+AGG 0.288139 1_3:-47707830 Msa0121650:CDS
GCTGACAATTCAATTCCTTT+TGG 0.290203 1_3:-47708389 Msa0121650:CDS
GAATTATCCTTCTTTCTTTA+GGG 0.290624 1_3:+47705218 None:intergenic
AGTAACCTGTCAACCTTATC+TGG 0.324085 1_3:+47706271 None:intergenic
CTTGCCAATTCTTCTTTGGT+TGG 0.329576 1_3:+47706310 None:intergenic
GTGTTCCAGTGGTGAGTTCT+TGG 0.337470 1_3:+47710538 None:intergenic
GAGAGATCTTTATCAGAAAT+CGG 0.345293 1_3:-47705166 Msa0121650:CDS
TTGCCAATTCTTCTTTGGTT+GGG 0.347443 1_3:+47706311 None:intergenic
GACAATGAAACTTATCTTGC+CGG 0.348504 1_3:-47708146 Msa0121650:CDS
ATTTGGAAGGGAACCGACTA+TGG 0.349105 1_3:-47707852 Msa0121650:CDS
TACCGAGGCTGCTTGTTTAG+AGG 0.353531 1_3:+47708448 None:intergenic
TGTCCTGGAATGATTATATA+TGG 0.357270 1_3:+47707078 None:intergenic
AGGATAATTCGGCTAAGATT+TGG 0.366663 1_3:-47705205 Msa0121650:CDS
GTAACAGGAATTATTGAGAT+TGG 0.367209 1_3:-47707903 Msa0121650:intron
CCTGCATCTCTTGCCTCGTC+TGG 0.375111 1_3:-47708697 Msa0121650:CDS
GTATCCTCGTATTTCAGTTA+TGG 0.376265 1_3:-47710602 Msa0121650:exon
TTCCTCACAAACAGGAGAAA+TGG 0.380976 1_3:-47708525 Msa0121650:CDS
CAGCATCGAGGACTTATTAC+AGG 0.384625 1_3:-47707687 Msa0121650:intron
TAACCCAACCAAAGAAGAAT+TGG 0.384964 1_3:-47706314 Msa0121650:CDS
ATCAGGTAGCACGTGACTTC+AGG 0.385184 1_3:-47708725 Msa0121650:CDS
GGTGGATAAAACAAGCAATA+AGG 0.390831 1_3:-47707105 Msa0121650:CDS
TGAGACAGATACAACTTTCC+AGG 0.392181 1_3:-47706203 Msa0121650:intron
AAGTAAAGGTTCAGCCGAAC+TGG 0.401281 1_3:+47708250 None:intergenic
CTGAATGGGCTGAGGGTGCA+GGG 0.405222 1_3:-47707829 Msa0121650:CDS
TTTATTTGATGTTTATTTGT+CGG 0.405310 1_3:+47704783 None:intergenic
TAACAAACTTAGCAAGGTAT+TGG 0.408770 1_3:-47706371 Msa0121650:CDS
CTAAAGAAAGAAGGATAATT+CGG 0.411136 1_3:-47705216 Msa0121650:CDS
CTGTAGGCGCAACTTGTTCC+CGG 0.411671 1_3:+47709393 None:intergenic
GTACAAAAGAAGATAAATAA+AGG 0.414473 1_3:-47708095 Msa0121650:CDS
TGCTACCTGATCAGTGTTGC+TGG 0.422020 1_3:+47708737 None:intergenic
GCAGTTGGTTGTTCAGATAC+AGG 0.431565 1_3:-47707994 Msa0121650:intron
AGTTCGGCTGAACCTTTACT+TGG 0.432097 1_3:-47708248 Msa0121650:CDS
AGAGATCTTTATCAGAAATC+GGG 0.432214 1_3:-47705165 Msa0121650:CDS
ATAAAGTTGAATGAAGTAGA+AGG 0.433405 1_3:+47710750 None:intergenic
CAGTCTAGCCTCTTCCAGTT+CGG 0.434200 1_3:-47708264 Msa0121650:CDS
AAGCTCAAGAAGTGTCTTGT+TGG 0.438338 1_3:-47705085 Msa0121650:CDS
CACCTTTCAAAACTCGATCT+AGG 0.448811 1_3:+47704947 None:intergenic
GGTAGGAATTTCACCAGATA+AGG 0.449825 1_3:-47706284 Msa0121650:CDS
AAGAGATCGAAGTATTAAAC+AGG 0.450646 1_3:-47704861 Msa0121650:three_prime_UTR
TTCTTAGAAATATGCAATAG+AGG 0.460431 1_3:+47709290 None:intergenic
TTCCGCAGCTGTCAGCCATT+AGG 0.462714 1_3:+47704882 None:intergenic
AGATTAACTTCCTCACAAAC+AGG 0.464965 1_3:-47708533 Msa0121650:CDS
TATTTAGATAGATATAGATA+TGG 0.469921 1_3:+47710727 None:intergenic
GGAACCGACTATGGCTGAAT+GGG 0.470550 1_3:-47707843 Msa0121650:CDS
AGGCCATATATAATCATTCC+AGG 0.471211 1_3:-47707081 Msa0121650:CDS
GGGAACCGACTATGGCTGAA+TGG 0.475910 1_3:-47707844 Msa0121650:CDS
TAAATACAACGCAGATGGAT+AGG 0.479182 1_3:-47708785 Msa0121650:CDS
TATTTGGTTTATCTAGAGAA+AGG 0.480775 1_3:-47705138 Msa0121650:CDS
TAAGAAAGACAAGACATGTC+AGG 0.481264 1_3:-47709273 Msa0121650:intron
TTGATGCAGGAGGGAAGCAC+AGG 0.484071 1_3:-47707193 Msa0121650:intron
ACTCTGTAGGAACTTGTTCA+AGG 0.491792 1_3:+47708055 None:intergenic
TCCCGGAGCATCAAAACTAC+AGG 0.492479 1_3:+47709410 None:intergenic
TGACACCAGCAACACTGATC+AGG 0.494024 1_3:-47708742 Msa0121650:CDS
CCAGACGAGGCAAGAGATGC+AGG 0.494650 1_3:+47708697 None:intergenic
GGACAAATCAGAGGGCCTAA+TGG 0.495250 1_3:-47704897 Msa0121650:three_prime_UTR
TCGGCTGAACCTTTACTTGG+AGG 0.495395 1_3:-47708245 Msa0121650:CDS
AAGAGCAGTGTGATGAGTAT+AGG 0.500553 1_3:-47709313 Msa0121650:CDS
ATTTGGTTTATCTAGAGAAA+GGG 0.501595 1_3:-47705137 Msa0121650:CDS
ACCGAGGCTGCTTGTTTAGA+GGG 0.501754 1_3:+47708449 None:intergenic
TCTTGAGCTTGTAGAGTGCC+CGG 0.505531 1_3:+47705098 None:intergenic
TTGCTAGTTATGCATATTGG+TGG 0.510435 1_3:-47707123 Msa0121650:CDS
GTCTTCCAAGAACTCACCAC+TGG 0.513181 1_3:-47710543 Msa0121650:CDS
AATATGCATAACTAGCAAAT+CGG 0.513716 1_3:+47707128 None:intergenic
GTCTTCAATCTCAATTTGGA+AGG 0.513916 1_3:-47707865 Msa0121650:CDS
TTTCACCAGATAAGGTTGAC+AGG 0.514551 1_3:-47706276 Msa0121650:CDS
GATTTGCTAGTTATGCATAT+TGG 0.516441 1_3:-47707126 Msa0121650:CDS
TCCCTCTAAACAAGCAGCCT+CGG 0.518683 1_3:-47708450 Msa0121650:CDS
GATTCAAGCAAATTTACGCT+TGG 0.521413 1_3:-47707747 Msa0121650:CDS
CAAACTTAGCAAGGTATTGG+AGG 0.522948 1_3:-47706368 Msa0121650:CDS
GAGACGAGCAAAAGAGAGAA+AGG 0.524521 1_3:-47708189 Msa0121650:CDS
AGGTTCAGCCGAACTGGAAG+AGG 0.525196 1_3:+47708256 None:intergenic
TCTTGTAAAAGAACTGAAGT+AGG 0.526396 1_3:+47709332 None:intergenic
CAAAGAAGAATTGGCAAGAA+GGG 0.526973 1_3:-47706305 Msa0121650:CDS
CCAAAGAAGAATTGGCAAGA+AGG 0.527042 1_3:-47706306 Msa0121650:CDS
TTCCAGGACAATCCGTCTAC+CGG 0.528158 1_3:-47707065 Msa0121650:intron
ACACTAAACTGCTGCAGTTG+AGG 0.529648 1_3:-47704918 Msa0121650:three_prime_UTR
GGTCCGTCAGTTAGAGAGCC+GGG 0.530333 1_3:-47705116 Msa0121650:CDS
TTTAAACTGAAATGCAACCT+TGG 0.530789 1_3:+47705014 None:intergenic
TACCGGTAGACGGATTGTCC+TGG 0.531638 1_3:+47707063 None:intergenic
GCTTAACTGTCGGAAAATGA+AGG 0.532157 1_3:-47707807 Msa0121650:CDS
GGGTCCGTCAGTTAGAGAGC+CGG 0.535719 1_3:-47705117 Msa0121650:CDS
ATTTCTATGCAGAATACTGT+GGG 0.543442 1_3:-47706229 Msa0121650:CDS
AAATACAACGCAGATGGATA+GGG 0.548297 1_3:-47708784 Msa0121650:CDS
TTGGAGGCAACAAAACTGTA+AGG 0.550271 1_3:-47708229 Msa0121650:CDS
CCAGAAGTATAAGAAGATGA+AGG 0.550354 1_3:+47710511 None:intergenic
GACTATGGCTGAATGGGCTG+AGG 0.550713 1_3:-47707837 Msa0121650:CDS
GAAGGTAGAACTAACCCAAA+AGG 0.552190 1_3:+47708374 None:intergenic
CGATGCTGAGACCACGCCCT+TGG 0.555777 1_3:+47707702 None:intergenic
TCTTACGCCCTAAAGAAAGA+AGG 0.558734 1_3:-47705225 Msa0121650:CDS
ATCCATTTCTCCTGTTTGTG+AGG 0.561909 1_3:+47708523 None:intergenic
GAAGAATTGGCAAGAAGGGT+AGG 0.564264 1_3:-47706301 Msa0121650:CDS
CTATATAAGCAAGTCTGCAT+AGG 0.570446 1_3:+47705048 None:intergenic
GCTTCGAATCAGAACTCTGT+AGG 0.570606 1_3:+47708042 None:intergenic
CAACTAAACTTACCGGTAGA+CGG 0.572741 1_3:+47707053 None:intergenic
GGTATATAACAAACTTAGCA+AGG 0.574798 1_3:-47706377 Msa0121650:CDS
CTCTGTAGGAACTTGTTCAA+GGG 0.576974 1_3:+47708056 None:intergenic
AACATTAAATACAACGCAGA+TGG 0.578908 1_3:-47708790 Msa0121650:CDS
TTTCAGTTATGGAATCTGCT+AGG 0.579621 1_3:-47710591 Msa0121650:exon
AAGAAGTGTCTTGTTGGTCA+AGG 0.579678 1_3:-47705079 Msa0121650:CDS
ACCATAATACACTAAAGTAA+TGG 0.580587 1_3:+47710623 None:intergenic
TTGCGCCTACAGTCACAGCC+TGG 0.580774 1_3:-47709382 Msa0121650:CDS
AATTTCTATGCAGAATACTG+TGG 0.583637 1_3:-47706230 Msa0121650:CDS
TCTTCAATCTCAATTTGGAA+GGG 0.583713 1_3:-47707864 Msa0121650:CDS
TACATTGCTAAAAGTTACCA+AGG 0.583869 1_3:-47707719 Msa0121650:CDS
GGCCTAATGGCTGACAGCTG+CGG 0.588152 1_3:-47704884 Msa0121650:three_prime_UTR
TCTTACAAGTTCTCCAGACG+AGG 0.588352 1_3:+47708684 None:intergenic
TTCTGAACAAGAGTCGCAGT+TGG 0.594000 1_3:-47708009 Msa0121650:CDS
GCTAAAAGTTACCAAGGGCG+TGG 0.602278 1_3:-47707713 Msa0121650:CDS
AGATGAAAATCTAGTACACC+AGG 0.605649 1_3:+47709364 None:intergenic
TGAGTTCTTGGAAGACAAAG+TGG 0.608629 1_3:+47710550 None:intergenic
ATAACTAGCAAATCGGCACC+CGG 0.618916 1_3:+47707135 None:intergenic
AGGGTGCAGGGCTTAACTGT+CGG 0.624002 1_3:-47707817 Msa0121650:CDS
GATAAAACAAGCAATAAGGA+AGG 0.626347 1_3:-47707101 Msa0121650:CDS
TGCAGTTGAGGACAAATCAG+AGG 0.633723 1_3:-47704906 Msa0121650:three_prime_UTR
GTACACCAGGCTGTGACTGT+AGG 0.636883 1_3:+47709377 None:intergenic
GAGATCTTTATCAGAAATCG+GGG 0.638019 1_3:-47705164 Msa0121650:CDS
TATTAAGTCTTCAGCTACCG+AGG 0.640013 1_3:+47708433 None:intergenic
ATGAAGGCGCAACTTCGTTG+TGG 0.640554 1_3:-47707791 Msa0121650:CDS
GAACACAAGCATCGTAACCA+TGG 0.644168 1_3:+47709438 None:intergenic
GCAGTTGAGGACAAATCAGA+GGG 0.644744 1_3:-47704905 Msa0121650:three_prime_UTR
ATTTAACATAAGCACCATGA+GGG 0.648424 1_3:+47704705 None:intergenic
TCAGCCCATTCAGCCATAGT+CGG 0.648437 1_3:+47707839 None:intergenic
TCACAAACAGGAGAAATGGA+TGG 0.652953 1_3:-47708521 Msa0121650:CDS
ATGAAGGAAGAGTGTTCCAG+TGG 0.662656 1_3:+47710527 None:intergenic
ACTATGGCTGAATGGGCTGA+GGG 0.662679 1_3:-47707836 Msa0121650:CDS
AAAAGTTTAAAACTCAAACC+GGG 0.667831 1_3:-47707153 Msa0121650:CDS
GTGCCCGGCTCTCTAACTGA+CGG 0.674530 1_3:+47705113 None:intergenic
GTATTTATATATGTGCAATG+TGG 0.684715 1_3:-47704758 Msa0121650:three_prime_UTR
AATATCAATTAAAGCTGACG+AGG 0.690371 1_3:-47708414 Msa0121650:CDS
AGGGCGTGGTCTCAGCATCG+AGG 0.711287 1_3:-47707699 Msa0121650:CDS
CATTTAACATAAGCACCATG+AGG 0.715335 1_3:+47704704 None:intergenic
ACATTGCTAAAAGTTACCAA+GGG 0.718877 1_3:-47707718 Msa0121650:CDS
TTTCTATGCAGAATACTGTG+GGG 0.733762 1_3:-47706228 Msa0121650:CDS
GATTCCATAACTGAAATACG+AGG 0.757185 1_3:+47710598 None:intergenic
ATATAGAAGAGAATACACCA+AGG 0.818169 1_3:-47705031 Msa0121650:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GCTTATTTTATTTTATTTTT+AGG + chr1_3:47704714-47704733 None:intergenic 10.0%
!!! TTAAAATGTTATGTTTTTAT+TGG - chr1_3:47705959-47705978 Msa0121650:intron 10.0%
!!! CTTTTTATTAATTAAGATTA+GGG + chr1_3:47707992-47708011 None:intergenic 10.0%
!! TATTTAGATAGATATAGATA+TGG + chr1_3:47704778-47704797 None:intergenic 15.0%
!!! ATTACATAGTTTTAAATTGT+GGG + chr1_3:47705157-47705176 None:intergenic 15.0%
!!! AATTACATAGTTTTAAATTG+TGG + chr1_3:47705158-47705177 None:intergenic 15.0%
!! TAAAACTATGTAATTATGAT+TGG - chr1_3:47705163-47705182 Msa0121650:CDS 15.0%
!! AAAGTTAACAAAAAAAAAAG+TGG + chr1_3:47705826-47705845 None:intergenic 15.0%
!! TTGAATCTTGAATTATATTA+AGG - chr1_3:47705884-47705903 Msa0121650:intron 15.0%
!! AGAAAAAAAAGAAGAAAAAA+AGG + chr1_3:47706678-47706697 None:intergenic 15.0%
!!! TTTTTTTTCTTTTTTACTTC+AGG - chr1_3:47706688-47706707 Msa0121650:intron 15.0%
!!! CCTTTTTATTAATTAAGATT+AGG + chr1_3:47707993-47708012 None:intergenic 15.0%
!! CCTAATCTTAATTAATAAAA+AGG - chr1_3:47707990-47708009 Msa0121650:intron 15.0%
!!! CTTGTTTTATATTATCTTTT+GGG - chr1_3:47708624-47708643 Msa0121650:intron 15.0%
!!! TACTATATTTGTTTTCATAA+TGG + chr1_3:47708758-47708777 None:intergenic 15.0%
!!! TCTTTTTTTTTTAAATGGAT+TGG + chr1_3:47708949-47708968 None:intergenic 15.0%
!!! AAATTGATTTTTAAAAACAG+TGG - chr1_3:47709662-47709681 Msa0121650:intron 15.0%
!! AATATTTGATTACAACTTTA+AGG + chr1_3:47709900-47709919 None:intergenic 15.0%
!! TTTATTTGATGTTTATTTGT+CGG + chr1_3:47710722-47710741 None:intergenic 15.0%
!! ACAAATAAACATCAAATAAA+TGG - chr1_3:47710722-47710741 Msa0121650:five_prime_UTR 15.0%
!!! TGAAAATACAGTTCTAAATT+TGG + chr1_3:47705121-47705140 None:intergenic 20.0%
!! AAAAGGATAATACTGAAAAT+TGG + chr1_3:47705230-47705249 None:intergenic 20.0%
!! TCAAAATTATGGATAAGATA+AGG + chr1_3:47705279-47705298 None:intergenic 20.0%
!!! TCTTATCCATAATTTTGAAT+TGG - chr1_3:47705281-47705300 Msa0121650:CDS 20.0%
!!! CTTATCCATAATTTTGAATT+GGG - chr1_3:47705282-47705301 Msa0121650:CDS 20.0%
!!! GAATTCATTTTACTAATTTG+TGG - chr1_3:47705529-47705548 Msa0121650:intron 20.0%
!!! GAATTCATTTTACTAATTTG+TGG - chr1_3:47705529-47705548 Msa0121650:intron 20.0%
!!! ATAAGATTTGTTTCACAATT+TGG - chr1_3:47706003-47706022 Msa0121650:intron 20.0%
!! ATAACTCTAATAAAGATTGA+CGG + chr1_3:47706274-47706293 None:intergenic 20.0%
!! TAAATTTGACCAAATAAAGA+TGG + chr1_3:47706297-47706316 None:intergenic 20.0%
!!! TCTAACTAAATAAAAGTACA+TGG + chr1_3:47706339-47706358 None:intergenic 20.0%
!!! AAGTTAACTTTTCTTATACA+TGG - chr1_3:47706558-47706577 Msa0121650:intron 20.0%
!! AATCTAAAAATTAGAACCTA+AGG + chr1_3:47706600-47706619 None:intergenic 20.0%
!!! CATAATGGAATAATATCAAA+TGG - chr1_3:47706635-47706654 Msa0121650:intron 20.0%
!! GTACAAAAGAAGATAAATAA+AGG - chr1_3:47707407-47707426 Msa0121650:intron 20.0%
!! ATTAATATGGATAATGTAAC+AGG - chr1_3:47707584-47707603 Msa0121650:intron 20.0%
!! CAGAATACAAAAAATGTAAA+AGG + chr1_3:47708286-47708305 None:intergenic 20.0%
!!! CTTTTACATTTTTTGTATTC+TGG - chr1_3:47708284-47708303 Msa0121650:intron 20.0%
!!! ACTTTTTAATACTCTTTATG+AGG + chr1_3:47708335-47708354 None:intergenic 20.0%
!!! AAAAAGTTTAAAACTCAAAC+CGG - chr1_3:47708348-47708367 Msa0121650:intron 20.0%
!! ATTTAATCAACTAAACTTAC+CGG + chr1_3:47708459-47708478 None:intergenic 20.0%
!!! GCTTGTTTTATATTATCTTT+TGG - chr1_3:47708623-47708642 Msa0121650:intron 20.0%
!! ATATACAAGTTGTATTGTTT+CGG - chr1_3:47708877-47708896 Msa0121650:intron 20.0%
!!! TTTTTTTAAATGGATTGGAT+TGG + chr1_3:47708944-47708963 None:intergenic 20.0%
!!! CTGCTTCTTTTTTTTTTAAA+TGG + chr1_3:47708954-47708973 None:intergenic 20.0%
!!! GTTTTTCTGTATTTTTGAAT+CGG - chr1_3:47708973-47708992 Msa0121650:intron 20.0%
!!! ACAAAAATCAATTTTTACCA+CGG + chr1_3:47709693-47709712 None:intergenic 20.0%
!!! AATTGATTCTAATTTGAAGT+TGG + chr1_3:47709763-47709782 None:intergenic 20.0%
!! AAGTTGTAATCAAATATTTC+CGG - chr1_3:47709902-47709921 Msa0121650:intron 20.0%
!!! TTTTAGAAACAAACAAACAA+CGG - chr1_3:47709977-47709996 Msa0121650:intron 20.0%
!! AAACATTTCAATCAAAAGAA+AGG + chr1_3:47710015-47710034 None:intergenic 20.0%
! ATAAAGTTGAATGAAGTAGA+AGG + chr1_3:47704755-47704774 None:intergenic 25.0%
! ACCATTACTTTAGTGTATTA+TGG - chr1_3:47704878-47704897 Msa0121650:three_prime_UTR 25.0%
! ACCATAATACACTAAAGTAA+TGG + chr1_3:47704882-47704901 None:intergenic 25.0%
!!! TGGTTGATGATTCTAAATTA+CGG - chr1_3:47705083-47705102 Msa0121650:CDS 25.0%
!! TAGAACTGTATTTTCAATTG+CGG - chr1_3:47705125-47705144 Msa0121650:CDS 25.0%
! AGGTTAAAAAATATCACAAG+TGG + chr1_3:47705259-47705278 None:intergenic 25.0%
! TTGTATGCATCTTTCAAATA+TGG - chr1_3:47705318-47705337 Msa0121650:intron 25.0%
! CATCTTTCAAATATGGATAA+TGG - chr1_3:47705325-47705344 Msa0121650:intron 25.0%
!! TAAGCAAAACTTCACATTTT+TGG - chr1_3:47705377-47705396 Msa0121650:intron 25.0%
! TATTGAATAAGTGATGTATG+TGG - chr1_3:47705402-47705421 Msa0121650:intron 25.0%
! CATTCAATAAATGATGTATG+TGG + chr1_3:47705441-47705460 None:intergenic 25.0%
! ATACATCATTTATTGAATGC+AGG - chr1_3:47705442-47705461 Msa0121650:intron 25.0%
!! GTGGTTTTTCATAACTTTTT+AGG - chr1_3:47705548-47705567 Msa0121650:intron 25.0%
!! CACAAATTTAACTCTGAAAA+TGG - chr1_3:47705582-47705601 Msa0121650:intron 25.0%
!!! TTTCATAACCTTCTAGTTTT+AGG - chr1_3:47705688-47705707 Msa0121650:intron 25.0%
! CTGAATATGTGTTACAATTA+TGG - chr1_3:47705735-47705754 Msa0121650:intron 25.0%
! GATTCAAGTCATAAATCAAA+TGG + chr1_3:47705871-47705890 None:intergenic 25.0%
! TTCTTAGAAATATGCAATAG+AGG + chr1_3:47706215-47706234 None:intergenic 25.0%
! TAGAGTTATCCATCTTTATT+TGG - chr1_3:47706285-47706304 Msa0121650:CDS 25.0%
! AAACTAACTAAACAGAAACA+CGG + chr1_3:47706402-47706421 None:intergenic 25.0%
! CTAATATGAAAATGTTGAAG+AGG + chr1_3:47706513-47706532 None:intergenic 25.0%
!! CTCTTCAACATTTTCATATT+AGG - chr1_3:47706511-47706530 Msa0121650:intron 25.0%
!!! TTGTCTTTAACTTTTGACTT+CGG + chr1_3:47707341-47707360 None:intergenic 25.0%
! TATGAGATGCTCTATTAATA+TGG - chr1_3:47707571-47707590 Msa0121650:intron 25.0%
! CAACTTGTGTTTAAATACTA+CGG + chr1_3:47707958-47707977 None:intergenic 25.0%
!!! GTATCTTTTTACTTTTGAAC+CGG - chr1_3:47708100-47708119 Msa0121650:CDS 25.0%
!!! TATCTTTTTACTTTTGAACC+GGG - chr1_3:47708101-47708120 Msa0121650:CDS 25.0%
!! CCTTTTCTATAATGATGTAA+TGG + chr1_3:47708141-47708160 None:intergenic 25.0%
! CCATTACATCATTATAGAAA+AGG - chr1_3:47708138-47708157 Msa0121650:CDS 25.0%
!!! GCTGTTCACATTTTTTTTAA+TGG - chr1_3:47708160-47708179 Msa0121650:CDS 25.0%
!! AAAAGTTTAAAACTCAAACC+GGG - chr1_3:47708349-47708368 Msa0121650:intron 25.0%
! AATATGCATAACTAGCAAAT+CGG + chr1_3:47708377-47708396 None:intergenic 25.0%
! TCAAAAAAACTACTAGTTGA+CGG - chr1_3:47708512-47708531 Msa0121650:CDS 25.0%
! AAAAAAATTGTACATGGAAG+AGG - chr1_3:47709158-47709177 Msa0121650:intron 25.0%
! AAAAAATTGTACATGGAAGA+GGG - chr1_3:47709159-47709178 Msa0121650:intron 25.0%
! TGAAAACTAGTAAAACTGAA+TGG - chr1_3:47709492-47709511 Msa0121650:intron 25.0%
! GAAAACTAGTAAAACTGAAT+GGG - chr1_3:47709493-47709512 Msa0121650:intron 25.0%
!! TTTGTTCTTCCTTTGTTTAA+AGG - chr1_3:47710032-47710051 Msa0121650:intron 25.0%
!! TTGTTCTTCCTTTGTTTAAA+GGG - chr1_3:47710033-47710052 Msa0121650:intron 25.0%
!!! GCAATTTCATTCTAAAACAT+TGG - chr1_3:47710131-47710150 Msa0121650:intron 25.0%
! CTGCAATTATAAGAAAATGA+TGG + chr1_3:47710169-47710188 None:intergenic 25.0%
!! CATCATTTTCTTATAATTGC+AGG - chr1_3:47710167-47710186 Msa0121650:intron 25.0%
! GAATTATCCTTCTTTCTTTA+GGG + chr1_3:47710287-47710306 None:intergenic 25.0%
! CTAAAGAAAGAAGGATAATT+CGG - chr1_3:47710286-47710305 Msa0121650:intron 25.0%
!! TATTTGGTTTATCTAGAGAA+AGG - chr1_3:47710364-47710383 Msa0121650:intron 25.0%
!! ATTTGGTTTATCTAGAGAAA+GGG - chr1_3:47710365-47710384 Msa0121650:intron 25.0%
! GTATTTATATATGTGCAATG+TGG - chr1_3:47710744-47710763 Msa0121650:five_prime_UTR 25.0%
CTAAATATTTCTTCGCTTCA+TGG - chr1_3:47704791-47704810 Msa0121650:three_prime_UTR 30.0%
GTCAAAGTTATCTTAAAGCA+TGG - chr1_3:47705063-47705082 Msa0121650:CDS 30.0%
AGATGCATACAAAGTTACAA+AGG + chr1_3:47705310-47705329 None:intergenic 30.0%
! GTTTTGCTTATAATAGTGAC+TGG - chr1_3:47705476-47705495 Msa0121650:intron 30.0%
TCTGAAAATGGTTACAACTA+TGG - chr1_3:47705594-47705613 Msa0121650:intron 30.0%
TGGTTACAACTATGGTTATA+TGG - chr1_3:47705602-47705621 Msa0121650:intron 30.0%
GTGTAAAACCTAAAACTAGA+AGG + chr1_3:47705699-47705718 None:intergenic 30.0%
AAATCAAATGGCAAGAAAAG+TGG + chr1_3:47705859-47705878 None:intergenic 30.0%
TGTTTCACAATTTGGAGAAT+AGG - chr1_3:47706011-47706030 Msa0121650:intron 30.0%
!! GAATCTCGTTTTAATAACCA+TGG - chr1_3:47706047-47706066 Msa0121650:intron 30.0%
TCTTGTAAAAGAACTGAAGT+AGG + chr1_3:47706173-47706192 None:intergenic 30.0%
! AATAAAAGTACATGGTAGAG+AGG + chr1_3:47706331-47706350 None:intergenic 30.0%
AAAGTTGTGCTTTCATTGAA+TGG + chr1_3:47706485-47706504 None:intergenic 30.0%
TATACATGGAATGCAGTAAA+TGG - chr1_3:47706572-47706591 Msa0121650:intron 30.0%
TTCCATTATGTGATGAAGTA+GGG + chr1_3:47706625-47706644 None:intergenic 30.0%
ATTCCATTATGTGATGAAGT+AGG + chr1_3:47706626-47706645 None:intergenic 30.0%
AACATTAAATACAACGCAGA+TGG - chr1_3:47706712-47706731 Msa0121650:intron 30.0%
GTCTGTTAGTAATTGTTAAG+TGG - chr1_3:47706893-47706912 Msa0121650:intron 30.0%
TTTACGCATCTATAAAGAGA+CGG + chr1_3:47706938-47706957 None:intergenic 30.0%
AATATCAATTAAAGCTGACG+AGG - chr1_3:47707088-47707107 Msa0121650:CDS 30.0%
! CTGACAATTCAATTCCTTTT+GGG - chr1_3:47707114-47707133 Msa0121650:CDS 30.0%
!! ACTTTACTTTTCCTGGTTTT+AGG - chr1_3:47707172-47707191 Msa0121650:CDS 30.0%
!!! TCCTGGTTTTAGGTTAATTT+TGG - chr1_3:47707182-47707201 Msa0121650:CDS 30.0%
ACCAAAATTAACCTAAAACC+AGG + chr1_3:47707186-47707205 None:intergenic 30.0%
! TGTACTTGTAACTTTTCTTC+TGG + chr1_3:47707392-47707411 None:intergenic 30.0%
ACATTTAAGGGAGTAAGAAA+TGG + chr1_3:47707552-47707571 None:intergenic 30.0%
! AGAGCATCTCATACATTTAA+GGG + chr1_3:47707564-47707583 None:intergenic 30.0%
! TAGAGCATCTCATACATTTA+AGG + chr1_3:47707565-47707584 None:intergenic 30.0%
GTAACAGGAATTATTGAGAT+TGG - chr1_3:47707599-47707618 Msa0121650:intron 30.0%
ACAAGTCTTCAATCTCAATT+TGG - chr1_3:47707633-47707652 Msa0121650:intron 30.0%
TCTTCAATCTCAATTTGGAA+GGG - chr1_3:47707638-47707657 Msa0121650:intron 30.0%
TACATTGCTAAAAGTTACCA+AGG - chr1_3:47707783-47707802 Msa0121650:CDS 30.0%
ACATTGCTAAAAGTTACCAA+GGG - chr1_3:47707784-47707803 Msa0121650:CDS 30.0%
ACTCATAGTTTACCGAAAAT+TGG - chr1_3:47707867-47707886 Msa0121650:CDS 30.0%
CTCATAGTTTACCGAAAATT+GGG - chr1_3:47707868-47707887 Msa0121650:CDS 30.0%
TGTTCTACATTGTTCTACAT+TGG - chr1_3:47708190-47708209 Msa0121650:CDS 30.0%
! CCTTTTCTATAATGATGTGA+TGG + chr1_3:47708225-47708244 None:intergenic 30.0%
CCATCACATCATTATAGAAA+AGG - chr1_3:47708222-47708241 Msa0121650:CDS 30.0%
!! GATTTGCTAGTTATGCATAT+TGG - chr1_3:47708376-47708395 Msa0121650:intron 30.0%
GATAAAACAAGCAATAAGGA+AGG - chr1_3:47708401-47708420 Msa0121650:CDS 30.0%
TGTCCTGGAATGATTATATA+TGG + chr1_3:47708427-47708446 None:intergenic 30.0%
TTGACGGAGAACAAAAATTA+AGG - chr1_3:47708528-47708547 Msa0121650:CDS 30.0%
ACAAAAATTAAGGTAGTTCG+TGG - chr1_3:47708538-47708557 Msa0121650:intron 30.0%
! TGTATTGTTTCGGTTTGAAT+TGG - chr1_3:47708887-47708906 Msa0121650:intron 30.0%
AGAAATCTTGTATTATCTCC+AGG - chr1_3:47709098-47709117 Msa0121650:intron 30.0%
GGTATATAACAAACTTAGCA+AGG - chr1_3:47709125-47709144 Msa0121650:intron 30.0%
TAACAAACTTAGCAAGGTAT+TGG - chr1_3:47709131-47709150 Msa0121650:intron 30.0%
ACAGTATTCTGCATAGAAAT+TGG + chr1_3:47709273-47709292 None:intergenic 30.0%
AATTTCTATGCAGAATACTG+TGG - chr1_3:47709272-47709291 Msa0121650:intron 30.0%
ATTTCTATGCAGAATACTGT+GGG - chr1_3:47709273-47709292 Msa0121650:intron 30.0%
!! TTCAGCTTCTTACTTTTGTT+TGG - chr1_3:47709438-47709457 Msa0121650:CDS 30.0%
! ACAGCATTTAAGATTCATGT+TGG + chr1_3:47709539-47709558 None:intergenic 30.0%
ATCTTAAATGCTGTGTTTGA+TGG - chr1_3:47709545-47709564 Msa0121650:intron 30.0%
AAATCACAATGTTGTCTGTT+TGG - chr1_3:47709625-47709644 Msa0121650:intron 30.0%
AATCACAATGTTGTCTGTTT+GGG - chr1_3:47709626-47709645 Msa0121650:intron 30.0%
! TGTTCTTCCTTTGTTTAAAG+GGG - chr1_3:47710034-47710053 Msa0121650:intron 30.0%
CGAATTATCCTTCTTTCTTT+AGG + chr1_3:47710288-47710307 None:intergenic 30.0%
!!! CTAAGATTTGGTTTTGAAGA+TGG - chr1_3:47710309-47710328 Msa0121650:intron 30.0%
GAGAGATCTTTATCAGAAAT+CGG - chr1_3:47710336-47710355 Msa0121650:intron 30.0%
AGAGATCTTTATCAGAAATC+GGG - chr1_3:47710337-47710356 Msa0121650:intron 30.0%
ATATAGAAGAGAATACACCA+AGG - chr1_3:47710471-47710490 Msa0121650:intron 30.0%
TTTAAACTGAAATGCAACCT+TGG + chr1_3:47710491-47710510 None:intergenic 30.0%
AGGTTGCATTTCAGTTTAAA+TGG - chr1_3:47710491-47710510 Msa0121650:intron 30.0%
! AAGAGATCGAAGTATTAAAC+AGG - chr1_3:47710641-47710660 Msa0121650:five_prime_UTR 30.0%
ATTTAACATAAGCACCATGA+GGG + chr1_3:47710800-47710819 None:intergenic 30.0%
!!! CTTATTTTAGACCTCTGGTT+TGG + chr1_3:47704677-47704696 None:intergenic 35.0%
GTATCCTCGTATTTCAGTTA+TGG - chr1_3:47704900-47704919 Msa0121650:three_prime_UTR 35.0%
GATTCCATAACTGAAATACG+AGG + chr1_3:47704907-47704926 None:intergenic 35.0%
TTTCAGTTATGGAATCTGCT+AGG - chr1_3:47704911-47704930 Msa0121650:three_prime_UTR 35.0%
! CCAGAAGTATAAGAAGATGA+AGG + chr1_3:47704994-47705013 None:intergenic 35.0%
CCTTCATCTTCTTATACTTC+TGG - chr1_3:47704991-47705010 Msa0121650:three_prime_UTR 35.0%
! TGTATTTTCAATTGCGGTTG+CGG - chr1_3:47705131-47705150 Msa0121650:CDS 35.0%
ATCACAAGTGGAACTTCAAA+AGG + chr1_3:47705247-47705266 None:intergenic 35.0%
AGGCTCCCAATTCAAAATTA+TGG + chr1_3:47705290-47705309 None:intergenic 35.0%
TGGATTGTATATACACGCTT+TGG - chr1_3:47705345-47705364 Msa0121650:intron 35.0%
TTGCTTATAATAGTGACTGG+AGG - chr1_3:47705479-47705498 Msa0121650:intron 35.0%
TGCTTATAATAGTGACTGGA+GGG - chr1_3:47705480-47705499 Msa0121650:intron 35.0%
! TTTATCCGCTCAAGTTTTTC+TGG - chr1_3:47705918-47705937 Msa0121650:intron 35.0%
AGATGAAAATCTAGTACACC+AGG + chr1_3:47706141-47706160 None:intergenic 35.0%
TAAGAAAGACAAGACATGTC+AGG - chr1_3:47706229-47706248 Msa0121650:CDS 35.0%
TTAGGCAGTATCAACATACA+AGG - chr1_3:47706529-47706548 Msa0121650:intron 35.0%
TTCCCTACTTCATCACATAA+TGG - chr1_3:47706620-47706639 Msa0121650:intron 35.0%
TAAATACAACGCAGATGGAT+AGG - chr1_3:47706717-47706736 Msa0121650:intron 35.0%
AAATACAACGCAGATGGATA+GGG - chr1_3:47706718-47706737 Msa0121650:intron 35.0%
AGATTAACTTCCTCACAAAC+AGG - chr1_3:47706969-47706988 Msa0121650:intron 35.0%
! GCTGACAATTCAATTCCTTT+TGG - chr1_3:47707113-47707132 Msa0121650:CDS 35.0%
!! CATCTTCACTTTACTTTTCC+TGG - chr1_3:47707165-47707184 Msa0121650:CDS 35.0%
GACAATGAAACTTATCTTGC+CGG - chr1_3:47707356-47707375 Msa0121650:intron 35.0%
!!! TTCTTCTGGAACATCTTTTC+CGG + chr1_3:47707378-47707397 None:intergenic 35.0%
GTCTTCAATCTCAATTTGGA+AGG - chr1_3:47707637-47707656 Msa0121650:intron 35.0%
GATTCAAGCAAATTTACGCT+TGG - chr1_3:47707755-47707774 Msa0121650:CDS 35.0%
ATACTACGGTTCAGTTTACA+AGG + chr1_3:47707944-47707963 None:intergenic 35.0%
CAATATTTGATCGTGGAGTT+CGG + chr1_3:47708057-47708076 None:intergenic 35.0%
GAACACACAATATTTGATCG+TGG + chr1_3:47708064-47708083 None:intergenic 35.0%
!! TTTTTACTTTTGAACCGGGT+TGG - chr1_3:47708105-47708124 Msa0121650:CDS 35.0%
TTGCTAGTTATGCATATTGG+TGG - chr1_3:47708379-47708398 Msa0121650:intron 35.0%
GGTGGATAAAACAAGCAATA+AGG - chr1_3:47708397-47708416 Msa0121650:CDS 35.0%
AGGCCATATATAATCATTCC+AGG - chr1_3:47708421-47708440 Msa0121650:CDS 35.0%
!!! GCTTCACTCTTTTGAAATGT+TGG - chr1_3:47708483-47708502 Msa0121650:CDS 35.0%
AATTAAGGTAGTTCGTGGAT+TGG - chr1_3:47708543-47708562 Msa0121650:intron 35.0%
TTCAGTCCCTTCAATTAGAT+CGG - chr1_3:47708599-47708618 Msa0121650:intron 35.0%
GCAACACGTAACTCTTTATT+TGG + chr1_3:47708682-47708701 None:intergenic 35.0%
! TGTTGTTGTTCACTTGTTAC+TGG + chr1_3:47708851-47708870 None:intergenic 35.0%
! TGTTTCGGTTTGAATTGGAT+TGG - chr1_3:47708892-47708911 Msa0121650:intron 35.0%
! TCAGTTTTCACTACAGGAAA+TGG - chr1_3:47708915-47708934 Msa0121650:intron 35.0%
!! GTTTGTTATATACCTTCTCC+TGG + chr1_3:47709119-47709138 None:intergenic 35.0%
GGAGGCAAAAAAATTGTACA+TGG - chr1_3:47709152-47709171 Msa0121650:intron 35.0%
TAACCCAACCAAAGAAGAAT+TGG - chr1_3:47709188-47709207 Msa0121650:intron 35.0%
TTGCCAATTCTTCTTTGGTT+GGG + chr1_3:47709194-47709213 None:intergenic 35.0%
CAAAGAAGAATTGGCAAGAA+GGG - chr1_3:47709197-47709216 Msa0121650:intron 35.0%
TTTCTATGCAGAATACTGTG+GGG - chr1_3:47709274-47709293 Msa0121650:CDS 35.0%
ATTAGCTACGATACAATACC+TGG + chr1_3:47709320-47709339 None:intergenic 35.0%
! TAAGAAGCTGCAACTTTTCA+TGG + chr1_3:47709353-47709372 None:intergenic 35.0%
TAAATGCTGTGTTTGATGGA+AGG - chr1_3:47709549-47709568 Msa0121650:intron 35.0%
AAATGCTGTGTTTGATGGAA+GGG - chr1_3:47709550-47709569 Msa0121650:intron 35.0%
! AGCAGGCAAAATTGATTCTA+GGG + chr1_3:47709817-47709836 None:intergenic 35.0%
TCTGCTACTGCTTGTATATT+TGG + chr1_3:47709852-47709871 None:intergenic 35.0%
GCAGATTAGCAAAAGAAACA+TGG - chr1_3:47709867-47709886 Msa0121650:intron 35.0%
AAAGCCATATGCCATAGAAA+CGG + chr1_3:47709950-47709969 None:intergenic 35.0%
! GTTTTGCAACACTCATGTTT+GGG + chr1_3:47710221-47710240 None:intergenic 35.0%
! TGTTTTGCAACACTCATGTT+TGG + chr1_3:47710222-47710241 None:intergenic 35.0%
AGGATAATTCGGCTAAGATT+TGG - chr1_3:47710297-47710316 Msa0121650:intron 35.0%
GAGATCTTTATCAGAAATCG+GGG - chr1_3:47710338-47710357 Msa0121650:intron 35.0%
TCAGAAATCGGGGAAATATT+TGG - chr1_3:47710348-47710367 Msa0121650:intron 35.0%
CTATATAAGCAAGTCTGCAT+AGG + chr1_3:47710457-47710476 None:intergenic 35.0%
!!! TACCTAGATCGAGTTTTGAA+AGG - chr1_3:47710553-47710572 Msa0121650:CDS 35.0%
! TTGATTTTCACATTCCCTCA+TGG - chr1_3:47710783-47710802 Msa0121650:five_prime_UTR 35.0%
CATTTAACATAAGCACCATG+AGG + chr1_3:47710801-47710820 None:intergenic 35.0%
!!! CGTAGCTTATTTTAGACCTC+TGG + chr1_3:47704682-47704701 None:intergenic 40.0%
TGAGTTCTTGGAAGACAAAG+TGG + chr1_3:47704955-47704974 None:intergenic 40.0%
ATGTGCCAGAAAAACTTGAG+CGG + chr1_3:47705926-47705945 None:intergenic 40.0%
!!! AACCTGTAGTTTTGATGCTC+CGG - chr1_3:47706090-47706109 Msa0121650:intron 40.0%
AAGAGCAGTGTGATGAGTAT+AGG - chr1_3:47706189-47706208 Msa0121650:intron 40.0%
AAACACGGATTCTGTGTAAC+TGG + chr1_3:47706387-47706406 None:intergenic 40.0%
GCACACAAAGGAAAAAGTTG+TGG + chr1_3:47706434-47706453 None:intergenic 40.0%
!! AACTTTTTCCTTTGTGTGCG+CGG - chr1_3:47706435-47706454 Msa0121650:intron 40.0%
AATGCAGTAAATGGCTCCTT+AGG - chr1_3:47706581-47706600 Msa0121650:intron 40.0%
ACTAACAGACTGAACTGACA+TGG + chr1_3:47706861-47706880 None:intergenic 40.0%
CATCTATAAAGAGACGGCTT+AGG + chr1_3:47706932-47706951 None:intergenic 40.0%
TTCCTCACAAACAGGAGAAA+TGG - chr1_3:47706977-47706996 Msa0121650:intron 40.0%
ATCCATTTCTCCTGTTTGTG+AGG + chr1_3:47706982-47707001 None:intergenic 40.0%
TCACAAACAGGAGAAATGGA+TGG - chr1_3:47706981-47707000 Msa0121650:intron 40.0%
TATTAAGTCTTCAGCTACCG+AGG + chr1_3:47707072-47707091 None:intergenic 40.0%
GAAGGTAGAACTAACCCAAA+AGG + chr1_3:47707131-47707150 None:intergenic 40.0%
!! GTTTTGTTGCCTCCAAGTAA+AGG + chr1_3:47707269-47707288 None:intergenic 40.0%
TTGGAGGCAACAAAACTGTA+AGG - chr1_3:47707273-47707292 Msa0121650:intron 40.0%
! CTCTGTAGGAACTTGTTCAA+GGG + chr1_3:47707449-47707468 None:intergenic 40.0%
! ACTCTGTAGGAACTTGTTCA+AGG + chr1_3:47707450-47707469 None:intergenic 40.0%
GCTTAACTGTCGGAAAATGA+AGG - chr1_3:47707695-47707714 Msa0121650:CDS 40.0%
AGTTTAGACGCTTCATCTGT+TGG - chr1_3:47707839-47707858 Msa0121650:CDS 40.0%
GTTTAGACGCTTCATCTGTT+GGG - chr1_3:47707840-47707859 Msa0121650:CDS 40.0%
TAGTTTACCGAAAATTGGGC+AGG - chr1_3:47707872-47707891 Msa0121650:CDS 40.0%
! ATGGTGTTAGAAAACCAACC+CGG + chr1_3:47708122-47708141 None:intergenic 40.0%
!! TTGTATTCTGGTGTTGATGC+AGG - chr1_3:47708296-47708315 Msa0121650:intron 40.0%
CAACTAAACTTACCGGTAGA+CGG + chr1_3:47708452-47708471 None:intergenic 40.0%
!! GTTCGTGGATTGGATTAGAT+CGG - chr1_3:47708553-47708572 Msa0121650:intron 40.0%
!! CAAGCACCGATCTAATTGAA+GGG + chr1_3:47708608-47708627 None:intergenic 40.0%
!! ACAAGCACCGATCTAATTGA+AGG + chr1_3:47708609-47708628 None:intergenic 40.0%
!! GATTGGTCAGTTTTCACTAC+AGG - chr1_3:47708909-47708928 Msa0121650:intron 40.0%
TGTTGCAGTTTGCATTGGAT+TGG - chr1_3:47708997-47709016 Msa0121650:intron 40.0%
CTTGTATTATCTCCAGGAGA+AGG - chr1_3:47709104-47709123 Msa0121650:intron 40.0%
!! CAAACTTAGCAAGGTATTGG+AGG - chr1_3:47709134-47709153 Msa0121650:intron 40.0%
CTTGCCAATTCTTCTTTGGT+TGG + chr1_3:47709195-47709214 None:intergenic 40.0%
CCTTCTTGCCAATTCTTCTT+TGG + chr1_3:47709199-47709218 None:intergenic 40.0%
CCAAAGAAGAATTGGCAAGA+AGG - chr1_3:47709196-47709215 Msa0121650:intron 40.0%
GGTAGGAATTTCACCAGATA+AGG - chr1_3:47709218-47709237 Msa0121650:intron 40.0%
TTTCACCAGATAAGGTTGAC+AGG - chr1_3:47709226-47709245 Msa0121650:intron 40.0%
AGTAACCTGTCAACCTTATC+TGG + chr1_3:47709234-47709253 None:intergenic 40.0%
TGAGACAGATACAACTTTCC+AGG - chr1_3:47709299-47709318 Msa0121650:CDS 40.0%
CTGATTTATCAGCTTCTCCA+AGG + chr1_3:47709601-47709620 None:intergenic 40.0%
ATGTTGTCTGTTTGGGTCAT+CGG - chr1_3:47709633-47709652 Msa0121650:intron 40.0%
! GCAGGCAAAATTGATTCTAG+GGG + chr1_3:47709816-47709835 None:intergenic 40.0%
! GAGCAGGCAAAATTGATTCT+AGG + chr1_3:47709818-47709837 None:intergenic 40.0%
!!! AATTTTGCCTGCTCTAGAAG+TGG - chr1_3:47709824-47709843 Msa0121650:intron 40.0%
CTTCAGTCTAATCACTACTC+CGG + chr1_3:47709924-47709943 None:intergenic 40.0%
GACTGAAGTTACCGTTTCTA+TGG - chr1_3:47709936-47709955 Msa0121650:intron 40.0%
GTTACCGTTTCTATGGCATA+TGG - chr1_3:47709943-47709962 Msa0121650:intron 40.0%
! TCTTCCTTTGTTTAAAGGGG+TGG - chr1_3:47710037-47710056 Msa0121650:intron 40.0%
AGATCCACCCCTTTAAACAA+AGG + chr1_3:47710044-47710063 None:intergenic 40.0%
TCTTACGCCCTAAAGAAAGA+AGG - chr1_3:47710277-47710296 Msa0121650:intron 40.0%
!! AAGCTCAAGAAGTGTCTTGT+TGG - chr1_3:47710417-47710436 Msa0121650:intron 40.0%
!! AAGAAGTGTCTTGTTGGTCA+AGG - chr1_3:47710423-47710442 Msa0121650:intron 40.0%
CACCTTTCAAAACTCGATCT+AGG + chr1_3:47710558-47710577 None:intergenic 40.0%
!! ATGAAGGAAGAGTGTTCCAG+TGG + chr1_3:47704978-47704997 None:intergenic 45.0%
! GAACACAAGCATCGTAACCA+TGG + chr1_3:47706067-47706086 None:intergenic 45.0%
!!! ACCTGTAGTTTTGATGCTCC+GGG - chr1_3:47706091-47706110 Msa0121650:intron 45.0%
!! ACTTTTTCCTTTGTGTGCGC+GGG - chr1_3:47706436-47706455 Msa0121650:intron 45.0%
TCTTACAAGTTCTCCAGACG+AGG + chr1_3:47706821-47706840 None:intergenic 45.0%
!! TTGGGTTAGTTCTACCTTCG+TGG - chr1_3:47707132-47707151 Msa0121650:CDS 45.0%
GATGTTAGAGTTAGCCACGA+AGG + chr1_3:47707149-47707168 None:intergenic 45.0%
AAGTAAAGGTTCAGCCGAAC+TGG + chr1_3:47707255-47707274 None:intergenic 45.0%
AGTTCGGCTGAACCTTTACT+TGG - chr1_3:47707254-47707273 Msa0121650:intron 45.0%
GAGACGAGCAAAAGAGAGAA+AGG - chr1_3:47707313-47707332 Msa0121650:intron 45.0%
GCTTCGAATCAGAACTCTGT+AGG + chr1_3:47707463-47707482 None:intergenic 45.0%
TTCTGAACAAGAGTCGCAGT+TGG - chr1_3:47707493-47707512 Msa0121650:intron 45.0%
GCAGTTGGTTGTTCAGATAC+AGG - chr1_3:47707508-47707527 Msa0121650:intron 45.0%
TGGTTGTTCAGATACAGGTG+TGG - chr1_3:47707513-47707532 Msa0121650:intron 45.0%
ATTTGGAAGGGAACCGACTA+TGG - chr1_3:47707650-47707669 Msa0121650:intron 45.0%
! CAGCATCGAGGACTTATTAC+AGG - chr1_3:47707815-47707834 Msa0121650:CDS 45.0%
GTCAAAGACGTAGCCACAAT+TGG - chr1_3:47708031-47708050 Msa0121650:CDS 45.0%
!! TATTCTGGTGTTGATGCAGG+AGG - chr1_3:47708299-47708318 Msa0121650:intron 45.0%
!! ATTCTGGTGTTGATGCAGGA+GGG - chr1_3:47708300-47708319 Msa0121650:intron 45.0%
ATAACTAGCAAATCGGCACC+CGG + chr1_3:47708370-47708389 None:intergenic 45.0%
TCGGTTGTTGCAGTTTGCAT+TGG - chr1_3:47708992-47709011 Msa0121650:intron 45.0%
GAAGAATTGGCAAGAAGGGT+AGG - chr1_3:47709201-47709220 Msa0121650:intron 45.0%
! GAAGCTGCAACTTTTCATGG+TGG + chr1_3:47709350-47709369 None:intergenic 45.0%
CTAGAAGCCTGAAGTATGTC+AGG - chr1_3:47709575-47709594 Msa0121650:intron 45.0%
! TAAAAACAGTGGTTCTGCCG+TGG - chr1_3:47709673-47709692 Msa0121650:intron 45.0%
!! TTTGGTTCCACTTCTAGAGC+AGG + chr1_3:47709834-47709853 None:intergenic 45.0%
ACACTAAACTGCTGCAGTTG+AGG - chr1_3:47710584-47710603 Msa0121650:CDS 45.0%
TGCAGTTGAGGACAAATCAG+AGG - chr1_3:47710596-47710615 Msa0121650:exon 45.0%
GCAGTTGAGGACAAATCAGA+GGG - chr1_3:47710597-47710616 Msa0121650:exon 45.0%
!!! CTTATTTTATTTTATTTTTA+GGG + chr1_3:47704713-47704732 None:intergenic 5.0%
!!! GTTTAATTTTTTTTTTTTTT+TGG - chr1_3:47710087-47710106 Msa0121650:intron 5.0%
GTCTTCCAAGAACTCACCAC+TGG - chr1_3:47704959-47704978 Msa0121650:three_prime_UTR 50.0%
GTGTTCCAGTGGTGAGTTCT+TGG + chr1_3:47704967-47704986 None:intergenic 50.0%
! TCCCGGAGCATCAAAACTAC+AGG + chr1_3:47706095-47706114 None:intergenic 50.0%
TGACACCAGCAACACTGATC+AGG - chr1_3:47706760-47706779 Msa0121650:intron 50.0%
TGCTACCTGATCAGTGTTGC+TGG + chr1_3:47706768-47706787 None:intergenic 50.0%
ATCAGGTAGCACGTGACTTC+AGG - chr1_3:47706777-47706796 Msa0121650:intron 50.0%
TCCCTCTAAACAAGCAGCCT+CGG - chr1_3:47707052-47707071 Msa0121650:intron 50.0%
ACCGAGGCTGCTTGTTTAGA+GGG + chr1_3:47707056-47707075 None:intergenic 50.0%
TACCGAGGCTGCTTGTTTAG+AGG + chr1_3:47707057-47707076 None:intergenic 50.0%
CTGGAAGAGGCTAGACTGAA+GGG + chr1_3:47707236-47707255 None:intergenic 50.0%
ACTGGAAGAGGCTAGACTGA+AGG + chr1_3:47707237-47707256 None:intergenic 50.0%
CAGTCTAGCCTCTTCCAGTT+CGG - chr1_3:47707238-47707257 Msa0121650:intron 50.0%
TCGGCTGAACCTTTACTTGG+AGG - chr1_3:47707257-47707276 Msa0121650:intron 50.0%
GGAACCGACTATGGCTGAAT+GGG - chr1_3:47707659-47707678 Msa0121650:intron 50.0%
TCAGCCCATTCAGCCATAGT+CGG + chr1_3:47707666-47707685 None:intergenic 50.0%
!! ACTATGGCTGAATGGGCTGA+GGG - chr1_3:47707666-47707685 Msa0121650:intron 50.0%
! ATGAAGGCGCAACTTCGTTG+TGG - chr1_3:47707711-47707730 Msa0121650:CDS 50.0%
GCTAAAAGTTACCAAGGGCG+TGG - chr1_3:47707789-47707808 Msa0121650:CDS 50.0%
TACCCTTGAACCATAGCGCA+GGG + chr1_3:47707920-47707939 None:intergenic 50.0%
TTACCCTTGAACCATAGCGC+AGG + chr1_3:47707921-47707940 None:intergenic 50.0%
TTCCAGGACAATCCGTCTAC+CGG - chr1_3:47708437-47708456 Msa0121650:CDS 50.0%
CACTCGACTCTTCACTTGCA+TGG + chr1_3:47708813-47708832 None:intergenic 50.0%
CATGCAAGTGAAGAGTCGAG+TGG - chr1_3:47708811-47708830 Msa0121650:intron 50.0%
TCCAAGGCCTGACATACTTC+AGG + chr1_3:47709585-47709604 None:intergenic 50.0%
! TCTTGAGCTTGTAGAGTGCC+CGG + chr1_3:47710407-47710426 None:intergenic 50.0%
GGACAAATCAGAGGGCCTAA+TGG - chr1_3:47710605-47710624 Msa0121650:exon 50.0%
! GTGACTGGAGGGTGTATGTC+TGG - chr1_3:47705491-47705510 Msa0121650:intron 55.0%
! CTGTAGGCGCAACTTGTTCC+CGG + chr1_3:47706112-47706131 None:intergenic 55.0%
GTACACCAGGCTGTGACTGT+AGG + chr1_3:47706128-47706147 None:intergenic 55.0%
AGGTTCAGCCGAACTGGAAG+AGG + chr1_3:47707249-47707268 None:intergenic 55.0%
GGGAACCGACTATGGCTGAA+TGG - chr1_3:47707658-47707677 Msa0121650:intron 55.0%
!! GACTATGGCTGAATGGGCTG+AGG - chr1_3:47707665-47707684 Msa0121650:intron 55.0%
AGGGTGCAGGGCTTAACTGT+CGG - chr1_3:47707685-47707704 Msa0121650:intron 55.0%
! CGAGCGACCTGCCCAATTTT+CGG + chr1_3:47707882-47707901 None:intergenic 55.0%
ACCCTTGAACCATAGCGCAG+GGG + chr1_3:47707919-47707938 None:intergenic 55.0%
TCGTGGAGTTCGGCCAATTG+TGG + chr1_3:47708047-47708066 None:intergenic 55.0%
! TTGATGCAGGAGGGAAGCAC+AGG - chr1_3:47708309-47708328 Msa0121650:intron 55.0%
!! TACCGGTAGACGGATTGTCC+TGG + chr1_3:47708442-47708461 None:intergenic 55.0%
GCCTGAAGTATGTCAGGCCT+TGG - chr1_3:47709581-47709600 Msa0121650:intron 55.0%
TTCCGCAGCTGTCAGCCATT+AGG + chr1_3:47710623-47710642 None:intergenic 55.0%
TTGCGCCTACAGTCACAGCC+TGG - chr1_3:47706120-47706139 Msa0121650:intron 60.0%
ACTCACACCCGCGCACACAA+AGG + chr1_3:47706446-47706465 None:intergenic 60.0%
CCAGACGAGGCAAGAGATGC+AGG + chr1_3:47706808-47706827 None:intergenic 60.0%
CCTGCATCTCTTGCCTCGTC+TGG - chr1_3:47706805-47706824 Msa0121650:intron 60.0%
!! CTGAATGGGCTGAGGGTGCA+GGG - chr1_3:47707673-47707692 Msa0121650:intron 60.0%
CCCTTGAACCATAGCGCAGG+GGG + chr1_3:47707918-47707937 None:intergenic 60.0%
CCCCCTGCGCTATGGTTCAA+GGG - chr1_3:47707915-47707934 Msa0121650:intron 60.0%
GGGTCCGTCAGTTAGAGAGC+CGG - chr1_3:47710385-47710404 Msa0121650:intron 60.0%
GGTCCGTCAGTTAGAGAGCC+GGG - chr1_3:47710386-47710405 Msa0121650:intron 60.0%
GTGCCCGGCTCTCTAACTGA+CGG + chr1_3:47710392-47710411 None:intergenic 60.0%
GGCCTAATGGCTGACAGCTG+CGG - chr1_3:47710618-47710637 Msa0121650:five_prime_UTR 60.0%
!! GCTGAATGGGCTGAGGGTGC+AGG - chr1_3:47707672-47707691 Msa0121650:intron 65.0%
CGATGCTGAGACCACGCCCT+TGG + chr1_3:47707803-47707822 None:intergenic 65.0%
AGGGCGTGGTCTCAGCATCG+AGG - chr1_3:47707803-47707822 Msa0121650:CDS 65.0%
GGTTAGAGCCCCCTGCGCTA+TGG - chr1_3:47707907-47707926 Msa0121650:intron 65.0%
GCCCCCTGCGCTATGGTTCA+AGG - chr1_3:47707914-47707933 Msa0121650:intron 65.0%
TTGGGCAGGTCGCTCGAGCG+AGG - chr1_3:47707886-47707905 Msa0121650:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 47704674 47710850 47704674 ID=Msa0121650;Name=Msa0121650
chr1_3 mRNA 47704674 47710850 47704674 ID=Msa0121650-mRNA-1;Parent=Msa0121650;Name=Msa0121650-mRNA-1;_AED=0.06;_eAED=0.06;_QI=245|0.87|0.88|1|1|1|9|374|583
chr1_3 exon 47704674 47705335 47704674 ID=Msa0121650-mRNA-1:exon:14412;Parent=Msa0121650-mRNA-1
chr1_3 exon 47706204 47706404 47706204 ID=Msa0121650-mRNA-1:exon:14411;Parent=Msa0121650-mRNA-1
chr1_3 exon 47707066 47707206 47707066 ID=Msa0121650-mRNA-1:exon:14410;Parent=Msa0121650-mRNA-1
chr1_3 exon 47707688 47707918 47707688 ID=Msa0121650-mRNA-1:exon:14409;Parent=Msa0121650-mRNA-1
chr1_3 exon 47707995 47708283 47707995 ID=Msa0121650-mRNA-1:exon:14408;Parent=Msa0121650-mRNA-1
chr1_3 exon 47708389 47708553 47708389 ID=Msa0121650-mRNA-1:exon:14407;Parent=Msa0121650-mRNA-1
chr1_3 exon 47708690 47708814 47708690 ID=Msa0121650-mRNA-1:exon:14406;Parent=Msa0121650-mRNA-1
chr1_3 exon 47709274 47709491 47709274 ID=Msa0121650-mRNA-1:exon:14405;Parent=Msa0121650-mRNA-1
chr1_3 exon 47710512 47710850 47710512 ID=Msa0121650-mRNA-1:exon:14404;Parent=Msa0121650-mRNA-1
chr1_3 five_prime_UTR 47710606 47710850 47710606 ID=Msa0121650-mRNA-1:five_prime_utr;Parent=Msa0121650-mRNA-1
chr1_3 CDS 47710512 47710605 47710512 ID=Msa0121650-mRNA-1:cds;Parent=Msa0121650-mRNA-1
chr1_3 CDS 47709274 47709491 47709274 ID=Msa0121650-mRNA-1:cds;Parent=Msa0121650-mRNA-1
chr1_3 CDS 47708690 47708814 47708690 ID=Msa0121650-mRNA-1:cds;Parent=Msa0121650-mRNA-1
chr1_3 CDS 47708389 47708553 47708389 ID=Msa0121650-mRNA-1:cds;Parent=Msa0121650-mRNA-1
chr1_3 CDS 47707995 47708283 47707995 ID=Msa0121650-mRNA-1:cds;Parent=Msa0121650-mRNA-1
chr1_3 CDS 47707688 47707918 47707688 ID=Msa0121650-mRNA-1:cds;Parent=Msa0121650-mRNA-1
chr1_3 CDS 47707066 47707206 47707066 ID=Msa0121650-mRNA-1:cds;Parent=Msa0121650-mRNA-1
chr1_3 CDS 47706204 47706404 47706204 ID=Msa0121650-mRNA-1:cds;Parent=Msa0121650-mRNA-1
chr1_3 CDS 47705048 47705335 47705048 ID=Msa0121650-mRNA-1:cds;Parent=Msa0121650-mRNA-1
chr1_3 three_prime_UTR 47704674 47705047 47704674 ID=Msa0121650-mRNA-1:three_prime_utr;Parent=Msa0121650-mRNA-1
Gene Sequence

>Msa0121650

ATGGAATCTGCTAGGACTATGTTTTGTTCTTCTCCACTTTGTCTTCCAAGAACTCACCACTGGAACACTCTTCCTTCATCTTCTTATACTTCTGGTCTTCTGTTATTTGAATCTCGTTTTAATAACCATGGTTACGATGCTTGTGTTCATAAACCTGTAGTTTTGATGCTCCGGGAACAAGTTGCGCCTACAGTCACAGCCTGGTGTACTAGATTTTCATCTCAGAACTTTCCTACTTCAGTTCTTTTACAAGAGCAGTGTGATGAGTATAGGCCTCTATTGCATATTTCTAAGAAAGACAAGACATGTCAGGCAACATTAAATACAACGCAGATGGATAGGGTCTCAGTTCAAGAAGAGAATGACACCAGCAACACTGATCAGGTAGCACGTGACTTCAGGCAGCACCTGCATCTCTTGCCTCGTCTGGAGAACTTATTAACTTCCTCACAAACAGGAGAAATGGATGGTTCTTCAACTTTACAGCATGCAGATAGTTTGCAGTGTAATGCAGTTTCTCCCTCTAAACAAGCAGCCTCGGTAGCTGAAGACTTAATATCAATTAAAGCTGACGAGGATGCTGACAATTCAATTCCTTTTGGTCTAGCCTCTTCCAGTTCGGCTGAACCTTTACTTGGAGGCAACAAAACTGTAAGGTCAACACGACTTCGAGAGAGACGAGCAAAAGAGAGAAAGGTTCCGAAGTCAAAAGTTAAAGACAATGAAACTTATCTTGCCGGAAAAGATGTTCCAGAAGAAAAGTTACAAGTACAAAAGAAGATAAATAAAGGAATGAATCAAAACGATCCCTTGAACAAGTTCCTACAGAGTTCTGATTCGAAGCAACTTTTGACTTCTGAACAAGAGTCGCAGTTGGTTGTTCAGATACAGGAATTATTGAGATTGGAAGAATTGAAGACAAGTCTTCAATCTCAATTTGGAAGGGAACCGACTATGGCTGAATGGGCTGAGGGTGCAGGGCTTAACTGTCGGAAAATGAAGGCGCAACTTCGTTGTGGTAACAGAAGCAGAGAAAAATTGATTCAAGCAAATTTACGCTTGGTACACTACATTGCTAAAAGTTACCAAGGGCGTGGTCTCAGCATCGAGGACTTATTACAGGAGGGAAGCACAGGCCTCATAAAGAGTATTAAAAAGTTTAAAACTCAAACCGGGTGCCGATTTGCTAGTTATGCATATTGGTGGATAAAACAAGCAATAAGGAAGGCCATATATAATCATTCCAGGACAATCCGTCTACCGGAGAAGGTATATAACAAACTTAGCAAGGTATTGGAGGCAAAAAAATTGTACATGGAAGAGGGAAATCTTAACCCAACCAAAGAAGAATTGGCAAGAAGGGTAGGAATTTCACCAGATAAGGTTGACAGGTTACTGTTTGCTGCAAGAATTCCAATTTCTATGCAGAATACTGTGGGGTCTGAGACAGATACAACTTTCCAGGAGATTACTGCAGATAGTGCAATTGAGAGCCCAAACATGAGTGTTGCAAAACAGCTGATGAGACGACATGTGCTCAACGTCTTAAATATCTTACGCCCTAAAGAAAGAAGGATAATTCGGCTAAGATTTGGTTTTGAAGATGGAGAAGAGAGATCTTTATCAGAAATCGGGGAAATATTTGGTTTATCTAGAGAAAGGGTCCGTCAGTTAGAGAGCCGGGCACTCTACAAGCTCAAGAAGTGTCTTGTTGGTCAAGGACTTGATGCCTATGCAGACTTGCTTATATAG

Protein sequence

>Msa0121650

MESARTMFCSSPLCLPRTHHWNTLPSSSYTSGLLLFESRFNNHGYDACVHKPVVLMLREQVAPTVTAWCTRFSSQNFPTSVLLQEQCDEYRPLLHISKKDKTCQATLNTTQMDRVSVQEENDTSNTDQVARDFRQHLHLLPRLENLLTSSQTGEMDGSSTLQHADSLQCNAVSPSKQAASVAEDLISIKADEDADNSIPFGLASSSSAEPLLGGNKTVRSTRLRERRAKERKVPKSKVKDNETYLAGKDVPEEKLQVQKKINKGMNQNDPLNKFLQSSDSKQLLTSEQESQLVVQIQELLRLEELKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQLRCGNRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQEGSTGLIKSIKKFKTQTGCRFASYAYWWIKQAIRKAIYNHSRTIRLPEKVYNKLSKVLEAKKLYMEEGNLNPTKEELARRVGISPDKVDRLLFAARIPISMQNTVGSETDTTFQEITADSAIESPNMSVAKQLMRRHVLNVLNILRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERVRQLESRALYKLKKCLVGQGLDAYADLLI*