AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0773080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0773080 MtrunA17_Chr5g0426581 98.017 353 6 1 1 352 1 353 0.0 710
Msa0773080 MtrunA17_Chr4g0037131 28.846 260 109 9 108 330 24 244 6.51e-14 71.2
Msa0773080 MtrunA17_Chr5g0405731 32.934 167 74 5 112 276 27 157 4.62e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0773080 AT4G09010.1 69.122 353 101 5 2 352 3 349 6.76e-170 477
Msa0773080 AT4G09010.3 69.122 353 101 5 2 352 50 396 2.24e-168 475
Msa0773080 AT4G09010.2 77.289 273 62 0 80 352 12 284 1.01e-155 439
Msa0773080 AT4G35970.1 30.864 243 125 9 108 330 22 241 6.00e-15 74.7
Msa0773080 AT4G35970.2 32.973 185 87 7 95 277 7 156 6.38e-15 73.6
Msa0773080 AT4G35000.1 30.612 196 90 7 111 302 26 179 1.84e-13 70.5

Find 106 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTTACAGCTCAAATTAA+AGG 0.197481 5_2:-47744521 Msa0773080:intron
ACACTTGCTTTCTCCCAAAT+TGG 0.208655 5_2:+47742822 None:intergenic
CAGAGGGGAGAATTCCAATT+TGG 0.239430 5_2:-47742836 Msa0773080:CDS
GACACCATACAATAACAATT+TGG 0.282505 5_2:-47747088 Msa0773080:five_prime_UTR
ATGGTGTCTTTCTTTGTCTT+TGG 0.290839 5_2:+47747103 None:intergenic
CAACTTAATGAGAAGAGATA+TGG 0.342787 5_2:+47741686 None:intergenic
GGATGCAACAGAGACCTTAT+TGG 0.348952 5_2:-47742128 Msa0773080:CDS
TCTGGTCCATTCTTCAATAT+AGG 0.359520 5_2:+47741655 None:intergenic
TGCTTCCTCTATAAAATTCA+AGG 0.360339 5_2:+47743783 None:intergenic
TGTACCCATGGAGCAACATC+TGG 0.365811 5_2:+47742097 None:intergenic
GACGCTATATACAGCAATAA+AGG 0.382507 5_2:-47744498 Msa0773080:intron
ATGAAGAAGAACAGTTCAAT+TGG 0.384244 5_2:-47746562 Msa0773080:CDS
AGAGGGGAGAATTCCAATTT+GGG 0.391351 5_2:-47742835 Msa0773080:CDS
AACAATTTGGTTGTAGCAAT+GGG 0.392030 5_2:-47747075 Msa0773080:exon
CCTTCTCTCCATCCACTTGG+TGG 0.400089 5_2:-47747024 Msa0773080:CDS
GTCTCTGTTGCATCCTGATC+AGG 0.401349 5_2:+47742136 None:intergenic
AAACTATATATCAAAACAAA+AGG 0.407867 5_2:+47741625 None:intergenic
TTCTTACAGCTCAAATTAAA+GGG 0.408017 5_2:-47744520 Msa0773080:intron
AGTTTGTAGGCAACGAAAAC+GGG 0.408809 5_2:-47744212 Msa0773080:intron
TTCACAAAATTGAGTACCTT+GGG 0.415559 5_2:-47741894 Msa0773080:CDS
TACACTGCATATGGATCAAA+TGG 0.415823 5_2:-47743443 Msa0773080:CDS
ATCTGGATCAGATGCCAATA+AGG 0.416378 5_2:+47742114 None:intergenic
ATGAGATCTGCATAGGAAAT+AGG 0.417756 5_2:+47743727 None:intergenic
CAAATGGTTCTATCCGGTTC+AGG 0.423018 5_2:-47744184 Msa0773080:intron
AAGTTTGTAGGCAACGAAAA+CGG 0.425385 5_2:-47744213 Msa0773080:intron
CGATGCTTTGACTTATGATA+AGG 0.425822 5_2:-47744313 Msa0773080:intron
AATTTACTCTACACTGCATA+TGG 0.428559 5_2:-47743452 Msa0773080:CDS
AGCTATACTTACCTCATAAT+CGG 0.431316 5_2:+47742039 None:intergenic
GCTGTGTTGTCCGCATTCAT+AGG 0.436481 5_2:-47742160 Msa0773080:CDS
TTGGGAGAAAGCAAGTGTTC+AGG 0.442764 5_2:-47742817 Msa0773080:CDS
CATTGGCGTGGCCATTGGTT+TGG 0.446869 5_2:-47746516 Msa0773080:intron
AAATGCATTGGCGTGGCCAT+TGG 0.448329 5_2:-47746521 Msa0773080:CDS
GGTTTGTTCGATAGGCAATT+TGG 0.451516 5_2:-47742885 Msa0773080:CDS
CGCATTCATAGGTCCTGATC+AGG 0.453856 5_2:-47742149 Msa0773080:CDS
CTGAACCGGATAGAACCATT+TGG 0.455331 5_2:+47744185 None:intergenic
AAGTCAAAACTTGAAATTGA+AGG 0.457417 5_2:+47741768 None:intergenic
GAAATGTTCAACCTGCATAC+TGG 0.458175 5_2:+47743704 None:intergenic
GTTTAGAGCCAGTGTTAGAA+TGG 0.459963 5_2:+47744335 None:intergenic
TGTCTTTCTTTGTCTTTGGA+AGG 0.462657 5_2:+47747107 None:intergenic
TAACAATTTGGTTGTAGCAA+TGG 0.462985 5_2:-47747076 Msa0773080:exon
CAAATTGGAATTCTCCCCTC+TGG 0.464493 5_2:+47742837 None:intergenic
TGTCTCTCGAACCGATTATG+AGG 0.467601 5_2:-47742050 Msa0773080:intron
AAGGAAGAGTTGAGATTGAG+AGG 0.468313 5_2:+47747043 None:intergenic
ACGAAAACGGGTGGCCCAAA+TGG 0.472902 5_2:-47744200 Msa0773080:CDS
AGCGCTGTCTGCGTTCTATT+AGG 0.478156 5_2:+47744643 None:intergenic
TCAAGCTCTGGATCGCTCCT+TGG 0.478254 5_2:-47744684 Msa0773080:CDS
TTGAAATTGAAGGTCTGTCC+TGG 0.484946 5_2:+47741778 None:intergenic
CTTCCTTCTCTCCATCCACT+TGG 0.486731 5_2:-47747027 Msa0773080:CDS
ACAACCAAATTGTTATTGTA+TGG 0.486743 5_2:+47747084 None:intergenic
TACTGAACGAGGTTGGTGTC+TGG 0.488795 5_2:+47746975 None:intergenic
AGAGATGTTCTTAAATGCAT+TGG 0.494004 5_2:-47746533 Msa0773080:CDS
TGAACCGGATAGAACCATTT+GGG 0.495657 5_2:+47744186 None:intergenic
GAGTATCACTTCCTCCCTCC+AGG 0.501686 5_2:-47741796 Msa0773080:three_prime_UTR
TTTCACAAAATTGAGTACCT+TGG 0.502680 5_2:-47741895 Msa0773080:CDS
TGATCCAGATGTTGCTCCAT+GGG 0.508395 5_2:-47742101 Msa0773080:CDS
GCGGTGGAAATGAGGAGAAA+GGG 0.509126 5_2:-47743475 Msa0773080:CDS
AGAGCCAGTGTTAGAATGGA+TGG 0.509679 5_2:+47744339 None:intergenic
GCAAAACCTATATTGAAGAA+TGG 0.509887 5_2:-47741661 Msa0773080:three_prime_UTR
CAGCAGCATTAGCGGTTCCA+AGG 0.510943 5_2:+47744667 None:intergenic
AAAACAAAAGGGTGAAACTC+TGG 0.510958 5_2:+47741637 None:intergenic
ATAGGAAATAGGTCCACCTT+TGG 0.513096 5_2:+47743738 None:intergenic
AGAATGGATGGAGTAAGATC+AGG 0.513947 5_2:+47744351 None:intergenic
CTGATCCAGATGTTGCTCCA+TGG 0.515839 5_2:-47742102 Msa0773080:CDS
AGTAGGCTTTGGTCCTCGCC+AGG 0.516067 5_2:-47742772 Msa0773080:intron
CCACCAAGTGGATGGAGAGA+AGG 0.516532 5_2:+47747024 None:intergenic
TCGCAAATGCGGTGGAAATG+AGG 0.517351 5_2:-47743483 Msa0773080:CDS
TGCGGTGGAAATGAGGAGAA+AGG 0.528919 5_2:-47743476 Msa0773080:CDS
TATTAGGTCAGCAGCATTAG+CGG 0.531810 5_2:+47744659 None:intergenic
GTGGCCCAAATGGTTCTATC+CGG 0.536727 5_2:-47744190 Msa0773080:CDS
AACTATATATCAAAACAAAA+GGG 0.539852 5_2:+47741626 None:intergenic
TAGGAGTCGATATCAAGCTC+TGG 0.543537 5_2:-47744696 Msa0773080:CDS
AATGAGAACCACCAAGTGGA+TGG 0.555144 5_2:+47747016 None:intergenic
GCAGATCTCATCCAGTATGC+AGG 0.556332 5_2:-47743715 Msa0773080:intron
ATCAGTGGGGTTTGTTCGAT+AGG 0.556677 5_2:-47742893 Msa0773080:intron
AGACAGTTTCGCGGCTCCGT+TGG 0.569239 5_2:+47742068 None:intergenic
AATAAGTAGACCTGAAAACA+AGG 0.576124 5_2:-47743818 Msa0773080:CDS
TGCATATGGATCAAATGGAC+AGG 0.579849 5_2:-47743438 Msa0773080:intron
TTGTCTTTGGAAGGAGAGAG+AGG 0.580804 5_2:+47747116 None:intergenic
TGTTCGATAGGCAATTTGGT+AGG 0.585772 5_2:-47742881 Msa0773080:CDS
TACTCCATCCATTCTAACAC+TGG 0.586894 5_2:-47744343 Msa0773080:CDS
TGTAGCACAAAGTGCAACAA+AGG 0.588580 5_2:-47743528 Msa0773080:intron
ATAGATTCATATTCCAAAGG+TGG 0.598179 5_2:-47743751 Msa0773080:CDS
TCTGCAATTCGCAAATGCGG+TGG 0.600496 5_2:-47743491 Msa0773080:CDS
ACTCAACATTATATTCTCAC+CGG 0.610958 5_2:-47741575 Msa0773080:three_prime_UTR
TACTGACGAGGCAGATCCAG+AGG 0.614094 5_2:-47742853 Msa0773080:CDS
GCTTCTGCAATTCGCAAATG+CGG 0.614456 5_2:-47743494 Msa0773080:CDS
TGAAGGTCTGTCCTGGAGGG+AGG 0.614588 5_2:+47741785 None:intergenic
AAATTGAAGGTCTGTCCTGG+AGG 0.615604 5_2:+47741781 None:intergenic
GAGATAGATTCATATTCCAA+AGG 0.616050 5_2:-47743754 Msa0773080:CDS
CGGTTCGAGAGACAGTTTCG+CGG 0.625711 5_2:+47742059 None:intergenic
TGTTCTTAAATGCATTGGCG+TGG 0.627346 5_2:-47746528 Msa0773080:CDS
AATTGAAGGTCTGTCCTGGA+GGG 0.636781 5_2:+47741782 None:intergenic
AAACACTTACTGAACGAGGT+TGG 0.637325 5_2:+47746968 None:intergenic
AATGGTTCTTACCAAACCAA+TGG 0.638356 5_2:+47746505 None:intergenic
ATACTGGATGAGATCTGCAT+AGG 0.640053 5_2:+47743720 None:intergenic
TAAGTAGACCTGAAAACAAG+GGG 0.641900 5_2:-47743816 Msa0773080:CDS
ATAAGTAGACCTGAAAACAA+GGG 0.645785 5_2:-47743817 Msa0773080:CDS
ACTGACGAGGCAGATCCAGA+GGG 0.648159 5_2:-47742852 Msa0773080:CDS
AACCAAACACTTACTGAACG+AGG 0.658415 5_2:+47746964 None:intergenic
GTAATGTCGATCTTCTTGCG+AGG 0.665206 5_2:+47741840 None:intergenic
TTGTAGGCAACGAAAACGGG+TGG 0.681028 5_2:-47744209 Msa0773080:intron
CTGATCAGGACCTATGAATG+CGG 0.688238 5_2:+47742150 None:intergenic
AATATGGTAAGTACCTGGCG+AGG 0.691514 5_2:+47742759 None:intergenic
GGATAATGAGAACCACCAAG+TGG 0.698522 5_2:+47747012 None:intergenic
TGGTAGGACTGATACTGACG+AGG 0.738100 5_2:-47742865 Msa0773080:CDS
CTGACGAGGCAGATCCAGAG+GGG 0.738388 5_2:-47742851 Msa0773080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATTATTAT+TGG - chr5_2:47743924-47743943 Msa0773080:intron 0.0%
!!! TAATTAATGTTTTATTTTCA+TGG + chr5_2:47742876-47742895 None:intergenic 10.0%
!! AGAAAAAATATTATGATTAT+TGG + chr5_2:47744849-47744868 None:intergenic 10.0%
!!! TTTATTATTGAAATTTTGAA+AGG - chr5_2:47746158-47746177 Msa0773080:intron 10.0%
!!! TGTATTGACAAATTTTATTT+TGG + chr5_2:47742464-47742483 None:intergenic 15.0%
!! AACATTAATTAATGTGAAAA+AGG - chr5_2:47742885-47742904 Msa0773080:CDS 15.0%
!! ACATTAATTAATGTGAAAAA+GGG - chr5_2:47742886-47742905 Msa0773080:CDS 15.0%
!!! TAATGTAATTTTCCATATTT+TGG - chr5_2:47743327-47743346 Msa0773080:intron 15.0%
!!! CAAATTTTAGTATTTTGTAT+CGG + chr5_2:47744721-47744740 None:intergenic 15.0%
!! TAAGTATTATGTTTCAAAAA+GGG + chr5_2:47745046-47745065 None:intergenic 15.0%
!! ATAAGTATTATGTTTCAAAA+AGG + chr5_2:47745047-47745066 None:intergenic 15.0%
!!! AATCAATTTTTGTTAAGAAT+AGG - chr5_2:47745118-47745137 Msa0773080:intron 15.0%
!! AATGAGTTATATATTATTGT+TGG + chr5_2:47745493-47745512 None:intergenic 15.0%
!!! TAGTTATTTTCAAACTTTAT+TGG - chr5_2:47745600-47745619 Msa0773080:intron 15.0%
!!! TCATTTCATAAAATTTTTGT+AGG + chr5_2:47745725-47745744 None:intergenic 15.0%
!! AACTATATATCAAAACAAAA+GGG + chr5_2:47747098-47747117 None:intergenic 15.0%
!! AAACTATATATCAAAACAAA+AGG + chr5_2:47747099-47747118 None:intergenic 15.0%
!!! TGAATGATGATAATATGTTT+TGG - chr5_2:47741841-47741860 Msa0773080:CDS 20.0%
!! TATAACTTATGATCAAATCA+TGG + chr5_2:47741955-47741974 None:intergenic 20.0%
!! TTTGATCATAAGTTATACTT+TGG - chr5_2:47741958-47741977 Msa0773080:intron 20.0%
!! GGTAATAACATACATTAATA+TGG - chr5_2:47742395-47742414 Msa0773080:intron 20.0%
!!! AACTAGTTTTATCTTATCAA+GGG - chr5_2:47743093-47743112 Msa0773080:intron 20.0%
!!! GCTATATATATCTTTTTGAA+AGG + chr5_2:47743413-47743432 None:intergenic 20.0%
!! TGCATTTCAATGATATAATT+TGG - chr5_2:47743537-47743556 Msa0773080:intron 20.0%
!!! ATTGTTAATTTGAAACTCAA+TGG - chr5_2:47743567-47743586 Msa0773080:intron 20.0%
!! CATTAGAAAGTAGTTAAAAT+AGG - chr5_2:47743825-47743844 Msa0773080:CDS 20.0%
!! TAGTTAAAATAGGAAACTTA+GGG - chr5_2:47743835-47743854 Msa0773080:intron 20.0%
!!! AATATTTCAGCTCAAATTTT+TGG + chr5_2:47743898-47743917 None:intergenic 20.0%
!! ATTATTGGATATGTATTTAG+TGG - chr5_2:47743957-47743976 Msa0773080:intron 20.0%
!! CGATACAAAATACTAAAATT+TGG - chr5_2:47744719-47744738 Msa0773080:intron 20.0%
!! AAGTATTATGTTTCAAAAAG+GGG + chr5_2:47745045-47745064 None:intergenic 20.0%
!! TGTCTAAAGATGTTTAAATT+TGG + chr5_2:47745382-47745401 None:intergenic 20.0%
!! TTTAAACATCTTTAGACAAT+AGG - chr5_2:47745384-47745403 Msa0773080:intron 20.0%
!! AATGAGTTATAAGTAAAATC+CGG + chr5_2:47745463-47745482 None:intergenic 20.0%
!! TTATATATTATTGTTGGAGA+GGG + chr5_2:47745487-47745506 None:intergenic 20.0%
!!! AATGTTAGTTTGATCTATTA+TGG - chr5_2:47745575-47745594 Msa0773080:intron 20.0%
!!! ATTTTCAAACTTTATTGGTA+AGG - chr5_2:47745605-47745624 Msa0773080:intron 20.0%
!!! AAATTTTATGAAATGATCCA+TGG - chr5_2:47745729-47745748 Msa0773080:intron 20.0%
!! GCAATAATAGTGATAAAATA+TGG + chr5_2:47745981-47746000 None:intergenic 20.0%
!! AATTTCAATAATAAAGAGCA+GGG + chr5_2:47746153-47746172 None:intergenic 20.0%
!! AAATTTCAATAATAAAGAGC+AGG + chr5_2:47746154-47746173 None:intergenic 20.0%
!!! TTTTATCATTTTATAGACAC+TGG + chr5_2:47746275-47746294 None:intergenic 20.0%
!! AAGACATAAAATAGAATGTA+GGG + chr5_2:47746323-47746342 None:intergenic 20.0%
!! AAAGACATAAAATAGAATGT+AGG + chr5_2:47746324-47746343 None:intergenic 20.0%
!! TGGTTAAAAAAAAAATCACT+TGG - chr5_2:47746756-47746775 Msa0773080:intron 20.0%
!!! TGAGTTTTATTTTATGTCAA+TGG + chr5_2:47747131-47747150 None:intergenic 20.0%
!! ACAACCAAATTGTTATTGTA+TGG + chr5_2:47741640-47741659 None:intergenic 25.0%
! ATATTACAATGTCCTTTCTT+AGG - chr5_2:47741798-47741817 Msa0773080:three_prime_UTR 25.0%
! ATATTATGTACACCTAAGAA+AGG + chr5_2:47741813-47741832 None:intergenic 25.0%
! AGATAAAGTCAATGTATGTT+TGG - chr5_2:47741894-47741913 Msa0773080:CDS 25.0%
! TGTTGTTCAAATGTATTGTT+AGG - chr5_2:47742097-47742116 Msa0773080:CDS 25.0%
! ATTACCTCTATTTATCAAAG+TGG + chr5_2:47742381-47742400 None:intergenic 25.0%
! ACATACATTAATATGGAAAG+TGG - chr5_2:47742402-47742421 Msa0773080:intron 25.0%
!!! ACGGTTTTATCCTTAAAATA+CGG - chr5_2:47742558-47742577 Msa0773080:intron 25.0%
! GAGTGTTTATAAACTATCAT+TGG - chr5_2:47742601-47742620 Msa0773080:intron 25.0%
! TTGTAAAGACAAAACTGTAA+GGG + chr5_2:47742744-47742763 None:intergenic 25.0%
!!! CAACTAGTTTTATCTTATCA+AGG - chr5_2:47743092-47743111 Msa0773080:intron 25.0%
! TAGTAAAATACAGAGAAAAC+TGG + chr5_2:47743305-47743324 None:intergenic 25.0%
!! CTTACAAACAAAGCATTATT+AGG + chr5_2:47743443-47743462 None:intergenic 25.0%
!!! TTAATCTCAACCATTGATTT+TGG - chr5_2:47743630-47743649 Msa0773080:intron 25.0%
! GTAGTTAAAATAGGAAACTT+AGG - chr5_2:47743834-47743853 Msa0773080:intron 25.0%
! TGATCAAGATGAAAATATGA+TGG + chr5_2:47743874-47743893 None:intergenic 25.0%
!!! ATTGATTTGATGATGAGTTT+CGG - chr5_2:47743985-47744004 Msa0773080:intron 25.0%
! AATTTCAGTGTAAGATTCTT+AGG - chr5_2:47744104-47744123 Msa0773080:intron 25.0%
! TTGACATATTAATGATCACA+TGG + chr5_2:47744140-47744159 None:intergenic 25.0%
! CATTAATATGTCAAACTCAA+TGG - chr5_2:47744146-47744165 Msa0773080:intron 25.0%
! TTCTTACAGCTCAAATTAAA+GGG - chr5_2:47744201-47744220 Msa0773080:CDS 25.0%
! AATAAGCTCATATCCAAATT+CGG + chr5_2:47744323-47744342 None:intergenic 25.0%
! TACATCTATGTTAACATCAT+TGG + chr5_2:47744593-47744612 None:intergenic 25.0%
! ATATGTATGCGAAACATATA+CGG + chr5_2:47745073-47745092 None:intergenic 25.0%
!! TAGTACTATTAACCAGATTT+TGG + chr5_2:47745333-47745352 None:intergenic 25.0%
! TATATATTATTGTTGGAGAG+GGG + chr5_2:47745486-47745505 None:intergenic 25.0%
! GTTATATATTATTGTTGGAG+AGG + chr5_2:47745488-47745507 None:intergenic 25.0%
! AATTCAAAAACCAACATACA+AGG + chr5_2:47745548-47745567 None:intergenic 25.0%
!! AAAGATAAATTTTCTGCAGT+AGG - chr5_2:47745932-47745951 Msa0773080:intron 25.0%
! TTCAAAGTTTGATATGCTAT+AGG - chr5_2:47746115-47746134 Msa0773080:intron 25.0%
! TCAAAGTTTGATATGCTATA+GGG - chr5_2:47746116-47746135 Msa0773080:intron 25.0%
!! ATTTCTTTTCTATATACAGG+TGG + chr5_2:47746197-47746216 None:intergenic 25.0%
!! GCAATTTCTTTTCTATATAC+AGG + chr5_2:47746200-47746219 None:intergenic 25.0%
! TAGAAAAGAAATTGCAATCT+TGG - chr5_2:47746205-47746224 Msa0773080:intron 25.0%
!! AATGTAGGGAATATAGTTTT+TGG + chr5_2:47746309-47746328 None:intergenic 25.0%
! TTGTAAAATGACAACTGAAT+CGG + chr5_2:47746364-47746383 None:intergenic 25.0%
!!! TTGTTTTGCGATATACTATT+TGG - chr5_2:47746405-47746424 Msa0773080:intron 25.0%
! AATTATGTTCTCTGTCTATT+TGG - chr5_2:47746531-47746550 Msa0773080:CDS 25.0%
!!! ATAGTTAATTTTTTGTCCCA+AGG + chr5_2:47746846-47746865 None:intergenic 25.0%
!!! CTATTTTTACAACTTGAGTT+TGG + chr5_2:47746906-47746925 None:intergenic 25.0%
! AAGTCAAAACTTGAAATTGA+AGG + chr5_2:47746956-47746975 None:intergenic 25.0%
GACACCATACAATAACAATT+TGG - chr5_2:47741633-47741652 Msa0773080:three_prime_UTR 30.0%
TAACAATTTGGTTGTAGCAA+TGG - chr5_2:47741645-47741664 Msa0773080:three_prime_UTR 30.0%
AACAATTTGGTTGTAGCAAT+GGG - chr5_2:47741646-47741665 Msa0773080:three_prime_UTR 30.0%
TCAATGTATGTTTGGATTGA+CGG - chr5_2:47741902-47741921 Msa0773080:CDS 30.0%
!! TTTGATTTTCGTACAGCAAA+TGG + chr5_2:47742126-47742145 None:intergenic 30.0%
ATGAAGAAGAACAGTTCAAT+TGG - chr5_2:47742159-47742178 Msa0773080:CDS 30.0%
AGAGATGTTCTTAAATGCAT+TGG - chr5_2:47742188-47742207 Msa0773080:intron 30.0%
TAAGAACCATTCTGATTCTT+TGG - chr5_2:47742228-47742247 Msa0773080:intron 30.0%
AAGAACCATTCTGATTCTTT+GGG - chr5_2:47742229-47742248 Msa0773080:intron 30.0%
CAAAAGAGATGCTTGATATT+GGG - chr5_2:47742435-47742454 Msa0773080:intron 30.0%
!! ATTTTAAGGATAAAACCGTG+AGG + chr5_2:47742557-47742576 None:intergenic 30.0%
CATAAAGTCTCAAACTGTTT+GGG + chr5_2:47742639-47742658 None:intergenic 30.0%
TAGTCACTAATTGAAGCTAA+GGG - chr5_2:47742671-47742690 Msa0773080:intron 30.0%
CTTGTAAAGACAAAACTGTA+AGG + chr5_2:47742745-47742764 None:intergenic 30.0%
GTCTTTACAAGATGTCTTAA+TGG - chr5_2:47742754-47742773 Msa0773080:intron 30.0%
TAGTATAACAACCTCACAAT+TGG + chr5_2:47742961-47742980 None:intergenic 30.0%
TTCAAAGAATACATACTGGT+TGG + chr5_2:47742985-47743004 None:intergenic 30.0%
TCAGTTCAAAGAATACATAC+TGG + chr5_2:47742989-47743008 None:intergenic 30.0%
AAGTCTGTTGTCAAAAACAA+AGG - chr5_2:47743767-47743786 Msa0773080:CDS 30.0%
GTTCTTACAGCTCAAATTAA+AGG - chr5_2:47744200-47744219 Msa0773080:CDS 30.0%
AGAGAATAGAATTCCGAATT+TGG - chr5_2:47744307-47744326 Msa0773080:intron 30.0%
TGTCTTTCATCGTTATTGAT+TGG - chr5_2:47744476-47744495 Msa0773080:intron 30.0%
TGGAATCTTCTTAAGTTTGT+AGG - chr5_2:47744496-47744515 Msa0773080:intron 30.0%
!! AAAAACAAAAGTACCTGAAC+CGG + chr5_2:47744553-47744572 None:intergenic 30.0%
! AACAGTTAGTCTGCTAAATA+AGG - chr5_2:47744632-47744651 Msa0773080:CDS 30.0%
!!! TAGTATTTTGTATCGGCTAT+AGG + chr5_2:47744714-47744733 None:intergenic 30.0%
ATTCATACAAGCAAAGAATG+AGG + chr5_2:47744814-47744833 None:intergenic 30.0%
AATAAGTAGACCTGAAAACA+AGG - chr5_2:47744903-47744922 Msa0773080:intron 30.0%
ATAAGTAGACCTGAAAACAA+GGG - chr5_2:47744904-47744923 Msa0773080:intron 30.0%
TGCTTCCTCTATAAAATTCA+AGG + chr5_2:47744941-47744960 None:intergenic 30.0%
GAGATAGATTCATATTCCAA+AGG - chr5_2:47744967-47744986 Msa0773080:intron 30.0%
ATAGATTCATATTCCAAAGG+TGG - chr5_2:47744970-47744989 Msa0773080:intron 30.0%
AATGAAGACAATAAAGTCAG+TGG + chr5_2:47745172-47745191 None:intergenic 30.0%
AATTTACTCTACACTGCATA+TGG - chr5_2:47745269-47745288 Msa0773080:intron 30.0%
! TTCTGTTCTTTTCCAAAATC+TGG - chr5_2:47745318-47745337 Msa0773080:intron 30.0%
!!! AGGATATTTTAGTAACGCAT+AGG - chr5_2:47745404-47745423 Msa0773080:intron 30.0%
TAGAAATCTTCCTTGTATGT+TGG - chr5_2:47745535-47745554 Msa0773080:intron 30.0%
!! TATCCATTTTTCACTTGAAG+AGG + chr5_2:47745658-47745677 None:intergenic 30.0%
TTTATGAAATGATCCATGGA+TGG - chr5_2:47745733-47745752 Msa0773080:intron 30.0%
GATAAAATATGGTAAGTACC+TGG + chr5_2:47745970-47745989 None:intergenic 30.0%
TTGTCAAATAGTCGTTATTG+CGG + chr5_2:47746058-47746077 None:intergenic 30.0%
TTGACAACACTACTAAATAG+CGG - chr5_2:47746071-47746090 Msa0773080:intron 30.0%
! ATTTTATAGACACTGGATAG+GGG + chr5_2:47746268-47746287 None:intergenic 30.0%
! CATTTTATAGACACTGGATA+GGG + chr5_2:47746269-47746288 None:intergenic 30.0%
! TCATTTTATAGACACTGGAT+AGG + chr5_2:47746270-47746289 None:intergenic 30.0%
TATCGCAAAACAATAGCAAT+TGG + chr5_2:47746398-47746417 None:intergenic 30.0%
AGCTATACTTACCTCATAAT+CGG + chr5_2:47746685-47746704 None:intergenic 30.0%
! CAGTTACTGAAACTTTTGTT+TGG - chr5_2:47746736-47746755 Msa0773080:intron 30.0%
! AATCACTTGGTAATTCTCTT+TGG - chr5_2:47746769-47746788 Msa0773080:intron 30.0%
!! TTTGGTTTGTTATCTTTCTC+AGG - chr5_2:47746787-47746806 Msa0773080:intron 30.0%
TTTCACAAAATTGAGTACCT+TGG - chr5_2:47746826-47746845 Msa0773080:intron 30.0%
TTCACAAAATTGAGTACCTT+GGG - chr5_2:47746827-47746846 Msa0773080:intron 30.0%
GGGACAAAAAATTAACTATG+AGG - chr5_2:47746847-47746866 Msa0773080:intron 30.0%
CAACTTAATGAGAAGAGATA+TGG + chr5_2:47747038-47747057 None:intergenic 30.0%
GCAAAACCTATATTGAAGAA+TGG - chr5_2:47747060-47747079 Msa0773080:CDS 30.0%
ACTCAACATTATATTCTCAC+CGG - chr5_2:47747146-47747165 Msa0773080:five_prime_UTR 30.0%
TGTCTTTCTTTGTCTTTGGA+AGG + chr5_2:47741617-47741636 None:intergenic 35.0%
ATGGTGTCTTTCTTTGTCTT+TGG + chr5_2:47741621-47741640 None:intergenic 35.0%
!! TGTCTGGTTGAAGTTGTTTT+TGG + chr5_2:47741733-47741752 None:intergenic 35.0%
!! CGGTTAGTTTGATAGAATCA+CGG - chr5_2:47741922-47741941 Msa0773080:intron 35.0%
AATGGTTCTTACCAAACCAA+TGG + chr5_2:47742219-47742238 None:intergenic 35.0%
AGAACCATTCTGATTCTTTG+GGG - chr5_2:47742230-47742249 Msa0773080:intron 35.0%
! TTGGCCACTTTGATAAATAG+AGG - chr5_2:47742374-47742393 Msa0773080:intron 35.0%
GCAAAAGAGATGCTTGATAT+TGG - chr5_2:47742434-47742453 Msa0773080:intron 35.0%
CAGACAATGTTTCAGAAAAG+TGG + chr5_2:47742515-47742534 None:intergenic 35.0%
! ACTCATTGAGCCGTATTTTA+AGG + chr5_2:47742571-47742590 None:intergenic 35.0%
CCATAAAGTCTCAAACTGTT+TGG + chr5_2:47742640-47742659 None:intergenic 35.0%
! CCAAACAGTTTGAGACTTTA+TGG - chr5_2:47742637-47742656 Msa0773080:intron 35.0%
GTAGTCACTAATTGAAGCTA+AGG - chr5_2:47742670-47742689 Msa0773080:intron 35.0%
AGTCACTAATTGAAGCTAAG+GGG - chr5_2:47742672-47742691 Msa0773080:intron 35.0%
!! CAGAAAGTCTTGTGTTACTT+AGG + chr5_2:47742823-47742842 None:intergenic 35.0%
CTAAGTAACACAAGACTTTC+TGG - chr5_2:47742821-47742840 Msa0773080:CDS 35.0%
TTTGATCTCAACCAATTGTG+AGG - chr5_2:47742947-47742966 Msa0773080:intron 35.0%
CAAATAAATCAGCAGCTTCT+TGG + chr5_2:47743181-47743200 None:intergenic 35.0%
AACCCAAAGTCAATAACTCT+TGG - chr5_2:47743266-47743285 Msa0773080:intron 35.0%
!! TGCCAAGAGTTATTGACTTT+GGG + chr5_2:47743271-47743290 None:intergenic 35.0%
ATAGTTGCGGAACCAAAATA+TGG + chr5_2:47743342-47743361 None:intergenic 35.0%
! CTTTGTTTGTAAGCTTGTGA+TGG - chr5_2:47743450-47743469 Msa0773080:CDS 35.0%
TTCGTGAGTTCTACTATTCT+AGG + chr5_2:47743481-47743500 None:intergenic 35.0%
TGGTTAAGTGCCAAAATCAA+TGG + chr5_2:47743643-47743662 None:intergenic 35.0%
GCTAAAAGCTATAAGAAGGT+GGG + chr5_2:47743701-47743720 None:intergenic 35.0%
TGCTAAAAGCTATAAGAAGG+TGG + chr5_2:47743702-47743721 None:intergenic 35.0%
AGCTGCTAAAAGCTATAAGA+AGG + chr5_2:47743705-47743724 None:intergenic 35.0%
GATTATGCAAAATCGTCTCT+TGG + chr5_2:47743740-47743759 None:intergenic 35.0%
GACGCTATATACAGCAATAA+AGG - chr5_2:47744223-47744242 Msa0773080:intron 35.0%
TTGCATTTACTGAATGGTTG+TGG - chr5_2:47744260-47744279 Msa0773080:intron 35.0%
! CGATGCTTTGACTTATGATA+AGG - chr5_2:47744408-47744427 Msa0773080:intron 35.0%
AAGTTTGTAGGCAACGAAAA+CGG - chr5_2:47744508-47744527 Msa0773080:CDS 35.0%
TAAGTAGACCTGAAAACAAG+GGG - chr5_2:47744905-47744924 Msa0773080:intron 35.0%
! TGCAGCCTTGAATTTTATAG+AGG - chr5_2:47744933-47744952 Msa0773080:intron 35.0%
ATGAGATCTGCATAGGAAAT+AGG + chr5_2:47744997-47745016 None:intergenic 35.0%
AAGAATAGGCTAGAAGTTGT+AGG - chr5_2:47745132-47745151 Msa0773080:intron 35.0%
TACACTGCATATGGATCAAA+TGG - chr5_2:47745278-47745297 Msa0773080:intron 35.0%
TCACTAGATGTATTCTTTGC+CGG - chr5_2:47745441-47745460 Msa0773080:intron 35.0%
!! TTTCTAAACTCTAAAGCCAG+TGG + chr5_2:47745521-47745540 None:intergenic 35.0%
TTACATGGTCATGTTAGTGA+AGG + chr5_2:47745787-47745806 None:intergenic 35.0%
! AATTTTCGTTGTGGATCAGT+GGG - chr5_2:47745814-47745833 Msa0773080:intron 35.0%
! AAATTTTCTGCAGTAGGCTT+TGG - chr5_2:47745938-47745957 Msa0773080:intron 35.0%
!!! AGGGAATATAGTTTTTGGCA+CGG + chr5_2:47746304-47746323 None:intergenic 35.0%
ACATTCAATGTTGTCAATCG+TGG + chr5_2:47746507-47746526 None:intergenic 35.0%
CATGGGTACAAAAATACCAA+CGG - chr5_2:47746637-47746656 Msa0773080:intron 35.0%
! GGTACTCAATTTTGTGAAAG+TGG + chr5_2:47746825-47746844 None:intergenic 35.0%
TCTGGTCCATTCTTCAATAT+AGG + chr5_2:47747069-47747088 None:intergenic 35.0%
AAAACAAAAGGGTGAAACTC+TGG + chr5_2:47747087-47747106 None:intergenic 35.0%
AAGGAAGAGTTGAGATTGAG+AGG + chr5_2:47741681-47741700 None:intergenic 40.0%
AAACACTTACTGAACGAGGT+TGG + chr5_2:47741756-47741775 None:intergenic 40.0%
AACCTCGTTCAGTAAGTGTT+TGG - chr5_2:47741755-47741774 Msa0773080:three_prime_UTR 40.0%
AACCAAACACTTACTGAACG+AGG + chr5_2:47741760-47741779 None:intergenic 40.0%
! TGTTCTTAAATGCATTGGCG+TGG - chr5_2:47742193-47742212 Msa0773080:intron 40.0%
AGACCTGTAATGCAGAGAAT+TGG - chr5_2:47742355-47742374 Msa0773080:intron 40.0%
AAATACGGCTCAATGAGTTG+TGG - chr5_2:47742573-47742592 Msa0773080:intron 40.0%
AAGCAGGCAATACCTCATAA+AGG + chr5_2:47742706-47742725 None:intergenic 40.0%
!! TTATGAGGTATTGCCTGCTT+TGG - chr5_2:47742706-47742725 Msa0773080:intron 40.0%
GCTCACATAAAAACCAAAGC+AGG + chr5_2:47742722-47742741 None:intergenic 40.0%
AATTGTGTCCGTAGTTGGTT+CGG + chr5_2:47742851-47742870 None:intergenic 40.0%
TGGTTAATTGTGTCCGTAGT+TGG + chr5_2:47742856-47742875 None:intergenic 40.0%
GGAAAAGAGAACATGCTCAT+GGG - chr5_2:47742907-47742926 Msa0773080:intron 40.0%
! ATGCTCATGGGCTTTTATAC+TGG - chr5_2:47742919-47742938 Msa0773080:intron 40.0%
!! TTGGTATGAGAGTGTTTGCT+AGG + chr5_2:47743047-47743066 None:intergenic 40.0%
CATACCAAACTCTAACTCAC+AGG - chr5_2:47743059-47743078 Msa0773080:intron 40.0%
ATAAATCAGCAGCTTCTTGG+AGG + chr5_2:47743178-47743197 None:intergenic 40.0%
ACATATTCCATCCTCTCAAG+TGG - chr5_2:47743213-47743232 Msa0773080:intron 40.0%
!! CTGCCAAGAGTTATTGACTT+TGG + chr5_2:47743272-47743291 None:intergenic 40.0%
GTTCCGCAACTATCTTTGAA+GGG - chr5_2:47743349-47743368 Msa0773080:intron 40.0%
GATCCCTTCAAAGATAGTTG+CGG + chr5_2:47743355-47743374 None:intergenic 40.0%
ACAACTCGTCTTCTTGGATT+TGG - chr5_2:47743500-47743519 Msa0773080:CDS 40.0%
!! TCTTGGATTTGGCTCTTCTA+AGG - chr5_2:47743511-47743530 Msa0773080:CDS 40.0%
!! CTTGGATTTGGCTCTTCTAA+GGG - chr5_2:47743512-47743531 Msa0773080:CDS 40.0%
!! TTGGATTTGGCTCTTCTAAG+GGG - chr5_2:47743513-47743532 Msa0773080:CDS 40.0%
TATTAGGTCAGCAGCATTAG+CGG + chr5_2:47744065-47744084 None:intergenic 40.0%
!! GCTGACTTGCATTTACTGAA+TGG - chr5_2:47744254-47744273 Msa0773080:intron 40.0%
TCGGAATTCTATTCTCTAGC+TGG + chr5_2:47744304-47744323 None:intergenic 40.0%
TCGACGTTTGATATCTCTTC+AGG - chr5_2:47744342-47744361 Msa0773080:CDS 40.0%
AGAATGGATGGAGTAAGATC+AGG + chr5_2:47744373-47744392 None:intergenic 40.0%
TACTCCATCCATTCTAACAC+TGG - chr5_2:47744378-47744397 Msa0773080:intron 40.0%
! GTTTAGAGCCAGTGTTAGAA+TGG + chr5_2:47744389-47744408 None:intergenic 40.0%
AGTTTGTAGGCAACGAAAAC+GGG - chr5_2:47744509-47744528 Msa0773080:CDS 40.0%
TGAACCGGATAGAACCATTT+GGG + chr5_2:47744538-47744557 None:intergenic 40.0%
GCTATAGGCTATAGACATAG+CGG + chr5_2:47744699-47744718 None:intergenic 40.0%
ATAGGAAATAGGTCCACCTT+TGG + chr5_2:47744986-47745005 None:intergenic 40.0%
ATACTGGATGAGATCTGCAT+AGG + chr5_2:47745004-47745023 None:intergenic 40.0%
GAAATGTTCAACCTGCATAC+TGG + chr5_2:47745020-47745039 None:intergenic 40.0%
TGTAGCACAAAGTGCAACAA+AGG - chr5_2:47745193-47745212 Msa0773080:intron 40.0%
TGCATATGGATCAAATGGAC+AGG - chr5_2:47745283-47745302 Msa0773080:intron 40.0%
GGCAAAGAATACATCTAGTG+AGG + chr5_2:47745442-47745461 None:intergenic 40.0%
TATAACTCATTCCCTTCCAC+TGG - chr5_2:47745502-47745521 Msa0773080:intron 40.0%
!! AAACTCTAAAGCCAGTGGAA+GGG + chr5_2:47745516-47745535 None:intergenic 40.0%
!! TAAACTCTAAAGCCAGTGGA+AGG + chr5_2:47745517-47745536 None:intergenic 40.0%
CTTGTGAACATTTCCATCCA+TGG + chr5_2:47745749-47745768 None:intergenic 40.0%
CGAAAATTGGACGTGTTACA+TGG + chr5_2:47745802-47745821 None:intergenic 40.0%
! AACACGTCCAATTTTCGTTG+TGG - chr5_2:47745805-47745824 Msa0773080:intron 40.0%
CACTGATCCACAACGAAAAT+TGG + chr5_2:47745815-47745834 None:intergenic 40.0%
! CAATTTTCGTTGTGGATCAG+TGG - chr5_2:47745813-47745832 Msa0773080:intron 40.0%
! ATTTTCGTTGTGGATCAGTG+GGG - chr5_2:47745815-47745834 Msa0773080:intron 40.0%
! GGTTTGTTCGATAGGCAATT+TGG - chr5_2:47745836-47745855 Msa0773080:intron 40.0%
TGTTCGATAGGCAATTTGGT+AGG - chr5_2:47745840-47745859 Msa0773080:intron 40.0%
AGAGGGGAGAATTCCAATTT+GGG - chr5_2:47745886-47745905 Msa0773080:intron 40.0%
ACACTTGCTTTCTCCCAAAT+TGG + chr5_2:47745902-47745921 None:intergenic 40.0%
TCGCTGATCGCAAAAAATAG+AGG - chr5_2:47746014-47746033 Msa0773080:intron 40.0%
!! TGAACAATCGCTATTGACTC+TGG + chr5_2:47746099-47746118 None:intergenic 40.0%
TCTCTGTCTATTTGGATAGC+TGG - chr5_2:47746539-47746558 Msa0773080:CDS 40.0%
ATCTGGATCAGATGCCAATA+AGG + chr5_2:47746610-47746629 None:intergenic 40.0%
!! CGTTGGTATTTTTGTACCCA+TGG + chr5_2:47746639-47746658 None:intergenic 40.0%
TTGAAATTGAAGGTCTGTCC+TGG + chr5_2:47746946-47746965 None:intergenic 40.0%
! TTGTCTTTGGAAGGAGAGAG+AGG + chr5_2:47741608-47741627 None:intergenic 45.0%
AATGAGAACCACCAAGTGGA+TGG + chr5_2:47741708-47741727 None:intergenic 45.0%
GGATAATGAGAACCACCAAG+TGG + chr5_2:47741712-47741731 None:intergenic 45.0%
! ACCATTCTGATTCTTTGGGG+TGG - chr5_2:47742233-47742252 Msa0773080:intron 45.0%
ACCACCCCAAAGAATCAGAA+TGG + chr5_2:47742237-47742256 None:intergenic 45.0%
!! TTCTGATTCTTTGGGGTGGT+TGG - chr5_2:47742237-47742256 Msa0773080:intron 45.0%
TGGCCAATTCTCTGCATTAC+AGG + chr5_2:47742361-47742380 None:intergenic 45.0%
GAGTCTAATGTGAGTCCTCA+CGG - chr5_2:47742539-47742558 Msa0773080:intron 45.0%
CAGGCAATACCTCATAAAGG+TGG + chr5_2:47742703-47742722 None:intergenic 45.0%
GGGAAAAGAGAACATGCTCA+TGG - chr5_2:47742906-47742925 Msa0773080:intron 45.0%
! AACTAGCTTGGAGAGCTACA+TGG + chr5_2:47743013-47743032 None:intergenic 45.0%
! GGAGGTTAGAGCTTGTTTGA+AGG + chr5_2:47743160-47743179 None:intergenic 45.0%
TCTACATAGAGCCACTTGAG+AGG + chr5_2:47743227-47743246 None:intergenic 45.0%
GGTTCCGCAACTATCTTTGA+AGG - chr5_2:47743348-47743367 Msa0773080:intron 45.0%
TCACGAACAACTCGTCTTCT+TGG - chr5_2:47743494-47743513 Msa0773080:CDS 45.0%
AGCAAGTGATGCACTCTAGT+TGG + chr5_2:47743663-47743682 None:intergenic 45.0%
GAGTGCATCACTTGCTTTAG+AGG - chr5_2:47743667-47743686 Msa0773080:intron 45.0%
GGTCAGTTGCATCTGTTTGT+AGG - chr5_2:47744006-47744025 Msa0773080:intron 45.0%
TAGGAGTCGATATCAAGCTC+TGG - chr5_2:47744025-47744044 Msa0773080:intron 45.0%
AGAGCCAGTGTTAGAATGGA+TGG + chr5_2:47744385-47744404 None:intergenic 45.0%
CTGAACCGGATAGAACCATT+TGG + chr5_2:47744539-47744558 None:intergenic 45.0%
! CAAATGGTTCTATCCGGTTC+AGG - chr5_2:47744537-47744556 Msa0773080:intron 45.0%
GCTTCTGCAATTCGCAAATG+CGG - chr5_2:47745227-47745246 Msa0773080:intron 45.0%
GCGCCTCTTCAAGTGAAAAA+TGG - chr5_2:47745652-47745671 Msa0773080:intron 45.0%
! ATCAGTGGGGTTTGTTCGAT+AGG - chr5_2:47745828-47745847 Msa0773080:intron 45.0%
CAAATTGGAATTCTCCCCTC+TGG + chr5_2:47745887-47745906 None:intergenic 45.0%
CAGAGGGGAGAATTCCAATT+TGG - chr5_2:47745885-47745904 Msa0773080:intron 45.0%
TTGGGAGAAAGCAAGTGTTC+AGG - chr5_2:47745904-47745923 Msa0773080:intron 45.0%
AATATGGTAAGTACCTGGCG+AGG + chr5_2:47745965-47745984 None:intergenic 45.0%
TCGTGGATCGCAGAAAATAG+CGG + chr5_2:47746490-47746509 None:intergenic 45.0%
CTGATCAGGACCTATGAATG+CGG + chr5_2:47746574-47746593 None:intergenic 45.0%
GGATGCAACAGAGACCTTAT+TGG - chr5_2:47746593-47746612 Msa0773080:CDS 45.0%
TGATCCAGATGTTGCTCCAT+GGG - chr5_2:47746620-47746639 Msa0773080:intron 45.0%
TGTCTCTCGAACCGATTATG+AGG - chr5_2:47746671-47746690 Msa0773080:intron 45.0%
GTAATGTCGATCTTCTTGCG+AGG + chr5_2:47746884-47746903 None:intergenic 45.0%
AATTGAAGGTCTGTCCTGGA+GGG + chr5_2:47746942-47746961 None:intergenic 45.0%
AAATTGAAGGTCTGTCCTGG+AGG + chr5_2:47746943-47746962 None:intergenic 45.0%
CTTCCTTCTCTCCATCCACT+TGG - chr5_2:47741694-47741713 Msa0773080:three_prime_UTR 50.0%
!! TACTGAACGAGGTTGGTGTC+TGG + chr5_2:47741749-47741768 None:intergenic 50.0%
! AAATGCATTGGCGTGGCCAT+TGG - chr5_2:47742200-47742219 Msa0773080:intron 50.0%
CTGGTGTACCGAACCAACTA+CGG - chr5_2:47742840-47742859 Msa0773080:CDS 50.0%
! AGAGTGTTTGCTAGGAGCTG+TGG + chr5_2:47743039-47743058 None:intergenic 50.0%
CCAGCCTGTGAGTTAGAGTT+TGG + chr5_2:47743066-47743085 None:intergenic 50.0%
CCAAACTCTAACTCACAGGC+TGG - chr5_2:47743063-47743082 Msa0773080:intron 50.0%
CATAGAGCCACTTGAGAGGA+TGG + chr5_2:47743223-47743242 None:intergenic 50.0%
AGCGCTGTCTGCGTTCTATT+AGG + chr5_2:47744081-47744100 None:intergenic 50.0%
TTGTAGGCAACGAAAACGGG+TGG - chr5_2:47744512-47744531 Msa0773080:CDS 50.0%
! GTGGCCCAAATGGTTCTATC+CGG - chr5_2:47744531-47744550 Msa0773080:intron 50.0%
!!! GCAGAAAGCCCCTTGTTTTC+AGG + chr5_2:47744916-47744935 None:intergenic 50.0%
GCAGATCTCATCCAGTATGC+AGG - chr5_2:47745006-47745025 Msa0773080:intron 50.0%
TCTGCAATTCGCAAATGCGG+TGG - chr5_2:47745230-47745249 Msa0773080:intron 50.0%
TCGCAAATGCGGTGGAAATG+AGG - chr5_2:47745238-47745257 Msa0773080:intron 50.0%
TGCGGTGGAAATGAGGAGAA+AGG - chr5_2:47745245-47745264 Msa0773080:intron 50.0%
GCGGTGGAAATGAGGAGAAA+GGG - chr5_2:47745246-47745265 Msa0773080:intron 50.0%
TGGTAGGACTGATACTGACG+AGG - chr5_2:47745856-47745875 Msa0773080:intron 50.0%
CGCATTCATAGGTCCTGATC+AGG - chr5_2:47746572-47746591 Msa0773080:CDS 50.0%
GTCTCTGTTGCATCCTGATC+AGG + chr5_2:47746588-47746607 None:intergenic 50.0%
CTGATCCAGATGTTGCTCCA+TGG - chr5_2:47746619-47746638 Msa0773080:intron 50.0%
TGTACCCATGGAGCAACATC+TGG + chr5_2:47746627-47746646 None:intergenic 50.0%
CCACCAAGTGGATGGAGAGA+AGG + chr5_2:47741700-47741719 None:intergenic 55.0%
CCTTCTCTCCATCCACTTGG+TGG - chr5_2:47741697-47741716 Msa0773080:three_prime_UTR 55.0%
! CATTGGCGTGGCCATTGGTT+TGG - chr5_2:47742205-47742224 Msa0773080:intron 55.0%
GAGCTGTGGCGTAACTAGCT+TGG + chr5_2:47743025-47743044 None:intergenic 55.0%
!! TCAAGCTCTGGATCGCTCCT+TGG - chr5_2:47744037-47744056 Msa0773080:intron 55.0%
CAGCAGCATTAGCGGTTCCA+AGG + chr5_2:47744057-47744076 None:intergenic 55.0%
ACGAAAACGGGTGGCCCAAA+TGG - chr5_2:47744521-47744540 Msa0773080:intron 55.0%
TACTGACGAGGCAGATCCAG+AGG - chr5_2:47745868-47745887 Msa0773080:intron 55.0%
ACTGACGAGGCAGATCCAGA+GGG - chr5_2:47745869-47745888 Msa0773080:intron 55.0%
CGGTTCGAGAGACAGTTTCG+CGG + chr5_2:47746665-47746684 None:intergenic 55.0%
GAGTATCACTTCCTCCCTCC+AGG - chr5_2:47746925-47746944 Msa0773080:intron 55.0%
GGGGCTGCACCACCTTTATG+AGG - chr5_2:47742691-47742710 Msa0773080:intron 60.0%
CTGACGAGGCAGATCCAGAG+GGG - chr5_2:47745870-47745889 Msa0773080:intron 60.0%
! AGTAGGCTTTGGTCCTCGCC+AGG - chr5_2:47745949-47745968 Msa0773080:intron 60.0%
AGACAGTTTCGCGGCTCCGT+TGG + chr5_2:47746656-47746675 None:intergenic 60.0%
TGAAGGTCTGTCCTGGAGGG+AGG + chr5_2:47746939-47746958 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 47741566 47747177 47741566 ID=Msa0773080;Name=Msa0773080
chr5_2 mRNA 47741566 47747177 47741566 ID=Msa0773080-mRNA-1;Parent=Msa0773080;Name=Msa0773080-mRNA-1;_AED=0.14;_eAED=0.14;_QI=98|1|1|1|1|1|11|258|352
chr5_2 exon 47741566 47741934 47741566 ID=Msa0773080-mRNA-1:exon:14307;Parent=Msa0773080-mRNA-1
chr5_2 exon 47742051 47742185 47742051 ID=Msa0773080-mRNA-1:exon:14306;Parent=Msa0773080-mRNA-1
chr5_2 exon 47742773 47742910 47742773 ID=Msa0773080-mRNA-1:exon:14305;Parent=Msa0773080-mRNA-1
chr5_2 exon 47743439 47743545 47743439 ID=Msa0773080-mRNA-1:exon:14304;Parent=Msa0773080-mRNA-1
chr5_2 exon 47743716 47743846 47743716 ID=Msa0773080-mRNA-1:exon:14303;Parent=Msa0773080-mRNA-1
chr5_2 exon 47744185 47744225 47744185 ID=Msa0773080-mRNA-1:exon:14302;Parent=Msa0773080-mRNA-1
chr5_2 exon 47744314 47744379 47744314 ID=Msa0773080-mRNA-1:exon:14301;Parent=Msa0773080-mRNA-1
chr5_2 exon 47744499 47744533 47744499 ID=Msa0773080-mRNA-1:exon:14300;Parent=Msa0773080-mRNA-1
chr5_2 exon 47744631 47744715 47744631 ID=Msa0773080-mRNA-1:exon:14299;Parent=Msa0773080-mRNA-1
chr5_2 exon 47746517 47746624 47746517 ID=Msa0773080-mRNA-1:exon:14298;Parent=Msa0773080-mRNA-1
chr5_2 exon 47746978 47747177 47746978 ID=Msa0773080-mRNA-1:exon:14297;Parent=Msa0773080-mRNA-1
chr5_2 five_prime_UTR 47747080 47747177 47747080 ID=Msa0773080-mRNA-1:five_prime_utr;Parent=Msa0773080-mRNA-1
chr5_2 CDS 47746978 47747079 47746978 ID=Msa0773080-mRNA-1:cds;Parent=Msa0773080-mRNA-1
chr5_2 CDS 47746517 47746624 47746517 ID=Msa0773080-mRNA-1:cds;Parent=Msa0773080-mRNA-1
chr5_2 CDS 47744631 47744715 47744631 ID=Msa0773080-mRNA-1:cds;Parent=Msa0773080-mRNA-1
chr5_2 CDS 47744499 47744533 47744499 ID=Msa0773080-mRNA-1:cds;Parent=Msa0773080-mRNA-1
chr5_2 CDS 47744314 47744379 47744314 ID=Msa0773080-mRNA-1:cds;Parent=Msa0773080-mRNA-1
chr5_2 CDS 47744185 47744225 47744185 ID=Msa0773080-mRNA-1:cds;Parent=Msa0773080-mRNA-1
chr5_2 CDS 47743716 47743846 47743716 ID=Msa0773080-mRNA-1:cds;Parent=Msa0773080-mRNA-1
chr5_2 CDS 47743439 47743545 47743439 ID=Msa0773080-mRNA-1:cds;Parent=Msa0773080-mRNA-1
chr5_2 CDS 47742773 47742910 47742773 ID=Msa0773080-mRNA-1:cds;Parent=Msa0773080-mRNA-1
chr5_2 CDS 47742051 47742185 47742051 ID=Msa0773080-mRNA-1:cds;Parent=Msa0773080-mRNA-1
chr5_2 CDS 47741824 47741934 47741824 ID=Msa0773080-mRNA-1:cds;Parent=Msa0773080-mRNA-1
chr5_2 three_prime_UTR 47741566 47741823 47741566 ID=Msa0773080-mRNA-1:three_prime_utr;Parent=Msa0773080-mRNA-1
Gene Sequence

>Msa0773080

ATGGGTGTCTCATTCCTCTCAATCTCAACTCTTCCTTCTCTCCATCCACTTGGTGGTTCTCATTATCCAAAAACAACTTCAACCAGACACCAACCTCGTTCAGTGTCCATTTGCTGTACGAAAATCAAAACTGATGTTAGTGATGAAGAAGAACAGTTCAATTGGAGACGAAGAGATGTTCTTAAATGCATTGGCGTGGCCATTGGTTTGGAGTCGATATCAAGCTCTGGATCGCTCCTTGGAACCGCTAATGCTGCTGACCTAATAGAACGCAGACAGCGCTCTGAATTTCAGTCTCAAATTAAAGGGACGCTATATACAGCAATAAAGGCAAATCCTGATCTTACTCCATCCATTCTAACACTGGCTCTAAACGATGCTTTGACTTATGATAAGGCAACGAAAACGGGTGGCCCAAATGGTTCTATCCGGTTCAGCTCAGAAATAAGTAGACCTGAAAACAAGGGGCTTTCTGCAGCCTTGAATTTTATAGAGGAAGCAAAAAAAGAGATAGATTCATATTCCAAAGGTGGACCTATTTCCTATGCAGATCTCATCCAGTATGCAGCACAAAGTGCAACAAAGGCTCAATTTTTAGCTTCTGCAATTCGCAAATGCGGTGGAAATGAGGAGAAAGGGAATTTACTCTACACTGCATATGGATCAAATGGACAGTGGGGTTTGTTCGATAGGCAATTTGGTAGGACTGATACTGACGAGGCAGATCCAGAGGGGAGAATTCCAATTTGGGAGAAAGCAAGTGTTCAGGAAATGAAAGATAAATTTTCTGCAGTAGGCTTTGGTCCTCGCCAGCTGGCTGTGTTGTCCGCATTCATAGGTCCTGATCAGGATGCAACAGAGACCTTATTGGCATCTGATCCAGATGTTGCTCCATGGGTACAAAAATACCAACGGAGCCGCGAAACTGTCTCTCGAACCGATTATGAGGTTGATCTGATAACCACTTTCACAAAATTGAGTACCTTGGGACAAAAAATTAACTATGAGGCATATACATATCCTCGCAAGAAGATCGACATTACCAAACTCAAGTTGTAA

Protein sequence

>Msa0773080

MGVSFLSISTLPSLHPLGGSHYPKTTSTRHQPRSVSICCTKIKTDVSDEEEQFNWRRRDVLKCIGVAIGLESISSSGSLLGTANAADLIERRQRSEFQSQIKGTLYTAIKANPDLTPSILTLALNDALTYDKATKTGGPNGSIRFSSEISRPENKGLSAALNFIEEAKKEIDSYSKGGPISYADLIQYAAQSATKAQFLASAIRKCGGNEEKGNLLYTAYGSNGQWGLFDRQFGRTDTDEADPEGRIPIWEKASVQEMKDKFSAVGFGPRQLAVLSAFIGPDQDATETLLASDPDVAPWVQKYQRSRETVSRTDYEVDLITTFTKLSTLGQKINYEAYTYPRKKIDITKLKL*