AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0194770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194770 MtrunA17_Chr2g0285831 96.437 449 16 0 1 449 1 449 0.0 899
Msa0194770 MtrunA17_Chr1g0180521 90.816 294 27 0 1 294 1 294 0.0 569
Msa0194770 MtrunA17_Chr1g0160941 30.970 268 165 8 11 264 4 265 2.03e-29 116
Msa0194770 MtrunA17_Chr8g0373091 29.368 269 168 7 11 264 4 265 1.12e-26 108
Msa0194770 MtrunA17_Chr1g0146281 26.259 278 186 6 17 278 28 302 2.92e-22 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194770 AT3G60500.3 60.449 445 147 6 1 433 1 428 0.0 518
Msa0194770 AT3G60500.2 60.449 445 147 6 1 433 1 428 0.0 518
Msa0194770 AT3G60500.1 60.449 445 147 6 1 433 1 428 0.0 518
Msa0194770 AT3G60500.4 63.969 383 117 5 1 377 1 368 3.22e-171 485
Msa0194770 AT3G12990.1 70.861 302 88 0 1 302 1 302 8.28e-159 451
Msa0194770 AT3G12990.3 70.861 302 88 0 1 302 1 302 8.28e-159 451
Msa0194770 AT3G12990.4 72.535 284 78 0 1 284 1 284 6.58e-151 430
Msa0194770 AT3G12990.2 75.234 214 53 0 1 214 1 214 1.97e-116 340
Msa0194770 AT3G07750.1 30.741 270 163 9 11 264 3 264 5.43e-28 112
Msa0194770 AT3G07750.2 30.741 270 163 9 11 264 3 264 5.43e-28 112
Msa0194770 AT1G60080.1 28.253 269 175 5 17 269 26 292 6.36e-24 101

Find 122 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAAGTTGAACATTAAATT+TGG 0.095631 2_1:+11139856 Msa0194770:CDS
CATAACTTAATTCCCATTAT+TGG 0.197437 2_1:-11143598 None:intergenic
TTCTTTCTGCCAAACTTGTC+TGG 0.208475 2_1:+11140127 Msa0194770:CDS
ATTTCCTGCGCTGGTTCTTC+TGG 0.247600 2_1:-11143462 None:intergenic
TCCTTTGAGCCTGGCCGTCC+TGG 0.261790 2_1:+11140024 Msa0194770:CDS
CTTCCAGTTGCAGTCACCTT+TGG 0.284591 2_1:+11140533 Msa0194770:CDS
CATTATAGACCGCGGTTTAC+GGG 0.295153 2_1:+11140071 Msa0194770:CDS
GTATATTTGTTTGTTCATTT+AGG 0.315602 2_1:+11143716 Msa0194770:three_prime_UTR
GAAAGGCGAGACAAATTTAA+TGG 0.327208 2_1:+11141450 Msa0194770:CDS
GCATTATAGACCGCGGTTTA+CGG 0.332870 2_1:+11140070 Msa0194770:CDS
AATCCAAAGGTGACTGCAAC+TGG 0.344185 2_1:-11140536 None:intergenic
GAATGTGATGCCACATCATT+AGG 0.345051 2_1:+11141472 Msa0194770:CDS
GGAGAATCTGCCGTTGAGTT+AGG 0.366917 2_1:+11140045 Msa0194770:CDS
GCAAGTTGAACATTAAATTT+GGG 0.368287 2_1:+11139857 Msa0194770:CDS
ATTAAATTTGGGAGGGATGA+TGG 0.374567 2_1:+11139868 Msa0194770:CDS
AGTGGATGGTCGGGGCCCCT+TGG 0.390912 2_1:+11139828 Msa0194770:CDS
TGTGGAACCACTGCCACGTT+AGG 0.394002 2_1:+11141367 Msa0194770:CDS
AGAAGGCCTGAATGCTCGTT+GGG 0.394350 2_1:+11140346 Msa0194770:CDS
TCTCGCCTTTCAGCTTCAAC+TGG 0.394391 2_1:-11141438 None:intergenic
TCATTAGGCCTATCTTTGTA+AGG 0.401300 2_1:-11139955 None:intergenic
CCCTAAAACCTTTGTTGTAT+CGG 0.403915 2_1:+11139193 Msa0194770:five_prime_UTR
ATAGATAGTGTACCTTCATT+AGG 0.408385 2_1:-11139970 None:intergenic
ACTCACTGCATCATTTATCT+TGG 0.411650 2_1:-11140894 None:intergenic
GCGAATGGCCCAGACAAGTT+TGG 0.413491 2_1:-11140136 None:intergenic
TCTTTCTGCCAAACTTGTCT+GGG 0.424579 2_1:+11140128 Msa0194770:CDS
CAGTCATTACAGCCTCTTCA+TGG 0.425419 2_1:-11140739 None:intergenic
TTGTGCAGCCTTACAAAGAT+AGG 0.432049 2_1:+11139947 Msa0194770:CDS
TCTTAGAAAATGCGATAGAC+TGG 0.437829 2_1:+11143658 Msa0194770:three_prime_UTR
GCTGATCCTTCCTTTGAGCC+TGG 0.439737 2_1:+11140015 Msa0194770:CDS
CATGAAGAGGCTGTAATGAC+TGG 0.448208 2_1:+11140740 Msa0194770:CDS
ATTGACACTGCTCTAACTGC+TGG 0.450510 2_1:+11143504 Msa0194770:CDS
TGACACGTGTCTCGCCCAAT+TGG 0.455639 2_1:-11139903 None:intergenic
AGCAGAGATTAGCTAATTGT+TGG 0.456222 2_1:+11139749 Msa0194770:CDS
GCAGTTAGAGCAGTGTCAAT+TGG 0.458988 2_1:-11143501 None:intergenic
AGAGCTTCGAGTGGATGGTC+GGG 0.470323 2_1:+11139819 Msa0194770:CDS
ATCAACTTCTAGTAAACAAA+AGG 0.472420 2_1:+11143419 Msa0194770:CDS
TGGGTCTGCCGAGATCCAAT+TGG 0.473726 2_1:+11139888 Msa0194770:CDS
TGTTTCTGCTTCCGACGAAA+AGG 0.477764 2_1:-11139218 None:intergenic
GTGGAACCACTGCCACGTTA+GGG 0.484142 2_1:+11141368 Msa0194770:CDS
GCAGATTCTCCAGGACGGCC+AGG 0.492915 2_1:-11140033 None:intergenic
TGCTGCAAATATTGCTGCAT+TGG 0.500659 2_1:+11140306 Msa0194770:CDS
GGGTCTGCCGAGATCCAATT+GGG 0.507284 2_1:+11139889 Msa0194770:CDS
TTAAATTTGGGAGGGATGAT+GGG 0.508701 2_1:+11139869 Msa0194770:CDS
GGAAGATGATGTATAATCAA+AGG 0.510424 2_1:-11140515 None:intergenic
TTGAAAAGCACAACAATGAA+AGG 0.511669 2_1:+11141296 Msa0194770:CDS
AGAGATTAGCTAATTGTTGG+CGG 0.512799 2_1:+11139752 Msa0194770:CDS
AACTCAACGGCAGATTCTCC+AGG 0.512885 2_1:-11140042 None:intergenic
GTGTGTGCAATTCAAAAGCC+TGG 0.513608 2_1:+11140797 Msa0194770:CDS
CAGAGCTTCGAGTGGATGGT+CGG 0.514274 2_1:+11139818 Msa0194770:CDS
GAAGATGATGTATAATCAAA+GGG 0.519406 2_1:-11140514 None:intergenic
ACGACATTCTTCCTCTGTTG+CGG 0.519551 2_1:+11141336 Msa0194770:CDS
ACTGTCTTGATTTCCTGCGC+TGG 0.521832 2_1:-11143471 None:intergenic
CTATCAGAGCTTCGAGTGGA+TGG 0.523011 2_1:+11139814 Msa0194770:CDS
TCCAGGACGGCCAGGCTCAA+AGG 0.523314 2_1:-11140025 None:intergenic
AAACTTGCTCATGTTAAAGC+TGG 0.525982 2_1:+11140860 Msa0194770:CDS
GCAGAGCGATTCAGTGTCAA+TGG 0.527593 2_1:-11140103 None:intergenic
TGAATTGACACAATCTGAGT+AGG 0.528375 2_1:-11141837 None:intergenic
CTGACACCTTACCAGCTTGA+GGG 0.534896 2_1:-11141547 None:intergenic
ACTGCAACACTTAATGCAAA+TGG 0.537645 2_1:+11140770 Msa0194770:CDS
CTTCACTGAATTCTCTCCCA+TGG 0.539169 2_1:+11139993 Msa0194770:CDS
ACATTCTTCCTCTGTTGCGG+TGG 0.540050 2_1:+11141339 Msa0194770:CDS
GTTCAACTTGCGATAGTCCA+AGG 0.542934 2_1:-11139845 None:intergenic
TGGAACCACTGCCACGTTAG+GGG 0.547405 2_1:+11141369 Msa0194770:CDS
TAAACAAAAGGATTCAAGAC+AGG 0.550828 2_1:+11143431 Msa0194770:CDS
GAGCTTCGAGTGGATGGTCG+GGG 0.552607 2_1:+11139820 Msa0194770:CDS
CAGAAGGCCTGAATGCTCGT+TGG 0.553951 2_1:+11140345 Msa0194770:CDS
TTTCAGCAATGAAAATCTTG+TGG 0.555730 2_1:+11140559 Msa0194770:CDS
TCTGTTGCGGTGGATGTATG+TGG 0.557391 2_1:+11141349 Msa0194770:CDS
TTATCGGTGGCCCCTCAAGC+TGG 0.557741 2_1:+11141536 Msa0194770:CDS
TGAAAAGCACAACAATGAAA+GGG 0.559466 2_1:+11141297 Msa0194770:CDS
ACTGCTGGGCAGAGTAATGA+AGG 0.560209 2_1:+11143519 Msa0194770:CDS
GTTGAACATTAAATTTGGGA+GGG 0.560586 2_1:+11139861 Msa0194770:CDS
CAATCAGATGGTGATAAAGA+AGG 0.565707 2_1:+11141403 Msa0194770:CDS
TACAAAGATAGGCCTAATGA+AGG 0.565777 2_1:+11139958 Msa0194770:CDS
ACCCTGCATTGTCTAGTATG+TGG 0.565903 2_1:-11140167 None:intergenic
CTAGACCAGTTGAAGCTGAA+AGG 0.569023 2_1:+11141433 Msa0194770:CDS
TGTGTGCAATTCAAAAGCCT+GGG 0.572264 2_1:+11140798 Msa0194770:CDS
CTGTCAAGCCCAAGAACAAG+AGG 0.572717 2_1:+11143559 Msa0194770:CDS
AGTTGAACATTAAATTTGGG+AGG 0.574931 2_1:+11139860 Msa0194770:CDS
TTCAACTTGCGATAGTCCAA+GGG 0.575404 2_1:-11139844 None:intergenic
CTCAAAGGAAGGATCAGCCA+TGG 0.576940 2_1:-11140010 None:intergenic
CTTAGAAAATGCGATAGACT+GGG 0.580888 2_1:+11143659 Msa0194770:three_prime_UTR
TAAGCCAGAAGAACCAGCGC+AGG 0.581328 2_1:+11143458 Msa0194770:CDS
AAGGCCTGAATGCTCGTTGG+GGG 0.582507 2_1:+11140348 Msa0194770:CDS
GTGCAGAGTAGCAAGAAGGA+TGG 0.583283 2_1:+11141499 Msa0194770:CDS
GAATTGACACAATCTGAGTA+GGG 0.583687 2_1:-11141836 None:intergenic
GGAAAACAAAATCAATCAGA+TGG 0.587328 2_1:+11141391 Msa0194770:CDS
ACTGACACCTTACCAGCTTG+AGG 0.591782 2_1:-11141548 None:intergenic
TGTCTCGCCCAATTGGATCT+CGG 0.592757 2_1:-11139896 None:intergenic
TGATGTATAATCAAAGGGAG+TGG 0.594545 2_1:-11140509 None:intergenic
GGAACCACTGCCACGTTAGG+GGG 0.597428 2_1:+11141370 Msa0194770:CDS
GGACGGCCAGGCTCAAAGGA+AGG 0.597532 2_1:-11140021 None:intergenic
CTGAGGAAGCTGACCTCAGG+AGG 0.600233 2_1:-11140400 None:intergenic
TTGACACTGCTCTAACTGCT+GGG 0.600516 2_1:+11143505 Msa0194770:CDS
TGACACCTTACCAGCTTGAG+GGG 0.602551 2_1:-11141546 None:intergenic
TAATGAAGGTAAGACTCTGA+AGG 0.603765 2_1:+11143533 Msa0194770:CDS
GAAGGCCTGAATGCTCGTTG+GGG 0.609514 2_1:+11140347 Msa0194770:CDS
ATCCACATACTAGACAATGC+AGG 0.610994 2_1:+11140165 Msa0194770:CDS
ACAAGTGCAGAGTAGCAAGA+AGG 0.616848 2_1:+11141495 Msa0194770:CDS
CATCTCTGAAGACATTCAGA+AGG 0.617687 2_1:+11140329 Msa0194770:CDS
ACAGCCTCTTCATGGTATGT+CGG 0.618076 2_1:-11140731 None:intergenic
CTGCACTTGTCCTAATGATG+TGG 0.618547 2_1:-11141482 None:intergenic
AAAAGGTTCCGATACAACAA+AGG 0.628612 2_1:-11139201 None:intergenic
TCAAAGGAAGGATCAGCCAT+GGG 0.631822 2_1:-11140009 None:intergenic
ATGAAGAGGCTGTAATGACT+GGG 0.631891 2_1:+11140741 Msa0194770:CDS
AGGCCTGAATGCTCGTTGGG+GGG 0.639267 2_1:+11140349 Msa0194770:CDS
TCCACATACTAGACAATGCA+GGG 0.639330 2_1:+11140166 Msa0194770:CDS
AGTTGTAGTGCATCCTCCTG+AGG 0.641826 2_1:+11140387 Msa0194770:CDS
AAAGCTTCTCTAGCTTCTCG+TGG 0.641908 2_1:+11141869 Msa0194770:CDS
TATAATGCGTCCTAACTCAA+CGG 0.642138 2_1:-11140055 None:intergenic
GGATCCGACATACCATGAAG+AGG 0.653779 2_1:+11140727 Msa0194770:CDS
CTCTACTTTCCCGTAAACCG+CGG 0.664238 2_1:-11140080 None:intergenic
TCTTCTATCAGAGCTTCGAG+TGG 0.667601 2_1:+11139810 Msa0194770:CDS
TCTAAGATAAGATACATGGT+CGG 0.675153 2_1:-11143642 None:intergenic
TATGTGGATGTCAATGCGAA+TGG 0.686074 2_1:-11140151 None:intergenic
GTGCAATTCAAAAGCCTGGG+GGG 0.686221 2_1:+11140801 Msa0194770:CDS
CAACGGCAGATTCTCCAGGA+CGG 0.698913 2_1:-11140038 None:intergenic
ACATACATCCACCGCAACAG+AGG 0.701182 2_1:-11141347 None:intergenic
GTGTGCAATTCAAAAGCCTG+GGG 0.708877 2_1:+11140799 Msa0194770:CDS
TCAACTTGCGATAGTCCAAG+GGG 0.732414 2_1:-11139843 None:intergenic
TTAGGACGCATTATAGACCG+CGG 0.761510 2_1:+11140063 Msa0194770:CDS
TGTGCAATTCAAAAGCCTGG+GGG 0.776295 2_1:+11140800 Msa0194770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAAAATTTTCTTATAAAT+AGG - chr2_1:11142462-11142481 None:intergenic 10.0%
!! TAAAAAATAATAATTTACAG+GGG - chr2_1:11142753-11142772 None:intergenic 10.0%
!!! TTCATATATTTTATAATCAT+TGG + chr2_1:11143291-11143310 Msa0194770:intron 10.0%
!!! CAACAATTTACTTTTTTTTT+TGG - chr2_1:11139134-11139153 None:intergenic 15.0%
!!! CCTCTTTAATTTTATTTTTT+CGG + chr2_1:11139492-11139511 Msa0194770:intron 15.0%
!! AAATTTCTGATAAAATGATA+TGG + chr2_1:11139594-11139613 Msa0194770:intron 15.0%
!! TTTAGATAAAATTGTTCAAT+TGG + chr2_1:11142042-11142061 Msa0194770:intron 15.0%
!! GTAATTTAACAAAACAATAA+GGG + chr2_1:11142395-11142414 Msa0194770:intron 15.0%
!! AAAACAAAAAAAATTTACAG+GGG - chr2_1:11142781-11142800 None:intergenic 15.0%
!! CAAAACAAAAAAAATTTACA+GGG - chr2_1:11142782-11142801 None:intergenic 15.0%
!!! CAAAACAATTTTTTTTTACA+GGG + chr2_1:11142887-11142906 Msa0194770:intron 15.0%
!!! AAAACAATTTTTTTTTACAG+GGG + chr2_1:11142888-11142907 Msa0194770:intron 15.0%
!! TAAAAAAAAAAAGTTTACAG+AGG + chr2_1:11142914-11142933 Msa0194770:intron 15.0%
!! AAAAAAAAAAAGTTTACAGA+GGG + chr2_1:11142915-11142934 Msa0194770:intron 15.0%
!!! TTTAGTCAAAAAATAGATTT+TGG - chr2_1:11143746-11143765 None:intergenic 15.0%
!!! AAAATCTATTTTTTGACTAA+AGG + chr2_1:11143745-11143764 Msa0194770:three_prime_UTR 15.0%
!!! TATTGATAACAGTTTAGATT+TGG + chr2_1:11139377-11139396 Msa0194770:intron 20.0%
!! CCGAAAAAATAAAATTAAAG+AGG - chr2_1:11139495-11139514 None:intergenic 20.0%
!!! AAACTAAAACTTTTGAACTA+TGG - chr2_1:11139562-11139581 None:intergenic 20.0%
!!! AAAAGTTTTAGTTTCTGATA+GGG + chr2_1:11139568-11139587 Msa0194770:intron 20.0%
!! ATATATACCAAAATCAAGAA+AGG - chr2_1:11140662-11140681 None:intergenic 20.0%
!!! AAGCATGAAAATTTTCATAA+CGG - chr2_1:11141183-11141202 None:intergenic 20.0%
!!! AATCAAAAGTTATTAGTTCT+TGG - chr2_1:11141577-11141596 None:intergenic 20.0%
!!! ATTACTTTTATCTGTCATTT+TGG + chr2_1:11141749-11141768 Msa0194770:intron 20.0%
!!! TTTTGATTAAGCATTTAAAC+TGG + chr2_1:11141939-11141958 Msa0194770:intron 20.0%
!!! GATTTCAATTTTTGGAATTT+TGG - chr2_1:11141996-11142015 None:intergenic 20.0%
!!! ATTTTATCTAAACAAATGAG+AGG - chr2_1:11142034-11142053 None:intergenic 20.0%
!! TCTTAAAATGACAACTAAAA+GGG - chr2_1:11142164-11142183 None:intergenic 20.0%
!! AATTCTTTCTGTAATAACTA+AGG + chr2_1:11142274-11142293 Msa0194770:intron 20.0%
!! ATTCTTTCTGTAATAACTAA+GGG + chr2_1:11142275-11142294 Msa0194770:intron 20.0%
!!! ATAACTAAGGGTAATTTTTT+TGG + chr2_1:11142287-11142306 Msa0194770:intron 20.0%
!! GGTAATTTAACAAAACAATA+AGG + chr2_1:11142394-11142413 Msa0194770:intron 20.0%
!!! AATTTTCTTATAAATAGGAC+CGG - chr2_1:11142457-11142476 None:intergenic 20.0%
!!! TCTTTTCTTATATAAAAGAC+CGG + chr2_1:11142696-11142715 Msa0194770:intron 20.0%
!! AAACAAAAAAAATTTACAGG+GGG - chr2_1:11142780-11142799 None:intergenic 20.0%
!! CCAAAACAAAAAAAATTTAC+AGG - chr2_1:11142783-11142802 None:intergenic 20.0%
!!! CCTGTAAATTTTTTTTGTTT+TGG + chr2_1:11142780-11142799 Msa0194770:intron 20.0%
!! TTTCTGCAAAAAAAAAAAGT+TGG + chr2_1:11142836-11142855 Msa0194770:intron 20.0%
!!! CCTGTAAAAAAAAATTGTTT+TGG - chr2_1:11142889-11142908 None:intergenic 20.0%
!!! CCAAAACAATTTTTTTTTAC+AGG + chr2_1:11142886-11142905 Msa0194770:intron 20.0%
!! AAAAAAAAAAGTTTACAGAG+GGG + chr2_1:11142916-11142935 Msa0194770:intron 20.0%
!! TGCAACATTAATTATTGTTT+GGG - chr2_1:11142985-11143004 None:intergenic 20.0%
!! ATGCAACATTAATTATTGTT+TGG - chr2_1:11142986-11143005 None:intergenic 20.0%
!! AAAAAAACATCTTCCAATAA+TGG + chr2_1:11143585-11143604 Msa0194770:CDS 20.0%
!! AAAAAACATCTTCCAATAAT+GGG + chr2_1:11143586-11143605 Msa0194770:CDS 20.0%
!!! ATTTTCTAAGATAAGATACA+TGG - chr2_1:11143649-11143668 None:intergenic 20.0%
!! GTATATTTGTTTGTTCATTT+AGG + chr2_1:11143716-11143735 Msa0194770:three_prime_UTR 20.0%
!!! GTTTTAATTGGGGTAAATTA+GGG - chr2_1:11139174-11139193 None:intergenic 25.0%
!!! AAGGTTTTAGGGTTTTAATT+GGG - chr2_1:11139185-11139204 None:intergenic 25.0%
!!! AAAGGTTTTAGGGTTTTAAT+TGG - chr2_1:11139186-11139205 None:intergenic 25.0%
!!! TTACAGCTATATTGTTTTTC+CGG + chr2_1:11139306-11139325 Msa0194770:intron 25.0%
!!! ATTCCATTCAGTTTTGAATT+TGG + chr2_1:11139331-11139350 Msa0194770:intron 25.0%
!!! TTCCATTCAGTTTTGAATTT+GGG + chr2_1:11139332-11139351 Msa0194770:intron 25.0%
! TTAAAGAGGAATTAACATCT+GGG - chr2_1:11139481-11139500 None:intergenic 25.0%
! ATTAAAGAGGAATTAACATC+TGG - chr2_1:11139482-11139501 None:intergenic 25.0%
!!! CAAAAGTTTTAGTTTCTGAT+AGG + chr2_1:11139567-11139586 Msa0194770:intron 25.0%
!! GCAAGTTGAACATTAAATTT+GGG + chr2_1:11139857-11139876 Msa0194770:CDS 25.0%
! GATAAACAAATCAGTAAGTT+GGG - chr2_1:11140231-11140250 None:intergenic 25.0%
! AGATAAACAAATCAGTAAGT+TGG - chr2_1:11140232-11140251 None:intergenic 25.0%
!! GATTTGTTTATCTACAACTA+AGG + chr2_1:11140239-11140258 Msa0194770:intron 25.0%
! GATAATATGATATGTATTGC+AGG + chr2_1:11140478-11140497 Msa0194770:intron 25.0%
! GAAGATGATGTATAATCAAA+GGG - chr2_1:11140517-11140536 None:intergenic 25.0%
!!! TTGATTTTGGTATATATACG+AGG + chr2_1:11140665-11140684 Msa0194770:intron 25.0%
!! TTTTTATGCGTAAAGATTTG+AGG + chr2_1:11140922-11140941 Msa0194770:intron 25.0%
! GATTATGGAATGTATATTGT+TGG + chr2_1:11141241-11141260 Msa0194770:intron 25.0%
!!! AATTTCTTTTGTTGTCTGAA+TGG + chr2_1:11141266-11141285 Msa0194770:intron 25.0%
! CTATAAATAACAGTCTTTGA+GGG - chr2_1:11141643-11141662 None:intergenic 25.0%
! ACTATAAATAACAGTCTTTG+AGG - chr2_1:11141644-11141663 None:intergenic 25.0%
!! AGACTGTTATTTATAGTCAA+TGG + chr2_1:11141647-11141666 Msa0194770:intron 25.0%
!!! TAGTCAATGGATTGATAATA+TGG + chr2_1:11141660-11141679 Msa0194770:intron 25.0%
! TGATAATATGGAAACCTATA+TGG + chr2_1:11141672-11141691 Msa0194770:intron 25.0%
! TATGTTGAGGTAAAAATACT+TGG + chr2_1:11141794-11141813 Msa0194770:intron 25.0%
!! ACTGCAATGATTTCAATTTT+TGG - chr2_1:11142004-11142023 None:intergenic 25.0%
! GTCTTAAAATGACAACTAAA+AGG - chr2_1:11142165-11142184 None:intergenic 25.0%
!!! TAAATGAGTAAAGGTACTAT+AGG - chr2_1:11142239-11142258 None:intergenic 25.0%
! ATGGGATAATAAATGAGTAA+AGG - chr2_1:11142248-11142267 None:intergenic 25.0%
! GTTATTACAGAAAGAATTGA+TGG - chr2_1:11142272-11142291 None:intergenic 25.0%
! AACAAAACAATAAGGGTTAA+TGG + chr2_1:11142402-11142421 Msa0194770:intron 25.0%
! TGTGACTCTTTCTTATAAAT+AGG - chr2_1:11142498-11142517 None:intergenic 25.0%
! AAAAGACCAACATTAAATGA+GGG - chr2_1:11142560-11142579 None:intergenic 25.0%
!!! AATGTTGGTCTTTTCAATAT+TGG + chr2_1:11142566-11142585 Msa0194770:intron 25.0%
!!! ATACTTCACAAATTTTGATG+AGG + chr2_1:11142604-11142623 Msa0194770:intron 25.0%
!!! TACTTCACAAATTTTGATGA+GGG + chr2_1:11142605-11142624 Msa0194770:intron 25.0%
!! ATTTTTGAATGACCTATTAG+GGG - chr2_1:11142811-11142830 None:intergenic 25.0%
!! CATTTTTGAATGACCTATTA+GGG - chr2_1:11142812-11142831 None:intergenic 25.0%
!!! TCATTTTTGAATGACCTATT+AGG - chr2_1:11142813-11142832 None:intergenic 25.0%
! ATCAACTTCTAGTAAACAAA+AGG + chr2_1:11143419-11143438 Msa0194770:CDS 25.0%
! CATAACTTAATTCCCATTAT+TGG - chr2_1:11143601-11143620 None:intergenic 25.0%
!!! TCTATTTTTTGACTAAAGGA+AGG + chr2_1:11143749-11143768 Msa0194770:three_prime_UTR 25.0%
!!! CTATTTTTTGACTAAAGGAA+GGG + chr2_1:11143750-11143769 Msa0194770:three_prime_UTR 25.0%
!!! GGTTTTAATTGGGGTAAATT+AGG - chr2_1:11139175-11139194 None:intergenic 30.0%
!!! AGGTTTTAGGGTTTTAATTG+GGG - chr2_1:11139184-11139203 None:intergenic 30.0%
! CTCTTCTTTATTTAACTCGT+CGG + chr2_1:11139267-11139286 Msa0194770:intron 30.0%
ATCCCAAATTCAAAACTGAA+TGG - chr2_1:11139337-11139356 None:intergenic 30.0%
AATACACGCATTTGTACAAA+AGG - chr2_1:11139361-11139380 None:intergenic 30.0%
TGATAACAGTTTAGATTTGG+AGG + chr2_1:11139380-11139399 Msa0194770:intron 30.0%
GATAACAGTTTAGATTTGGA+GGG + chr2_1:11139381-11139400 Msa0194770:intron 30.0%
! CGCAAGTTGAACATTAAATT+TGG + chr2_1:11139856-11139875 Msa0194770:CDS 30.0%
AGTTGAACATTAAATTTGGG+AGG + chr2_1:11139860-11139879 Msa0194770:CDS 30.0%
GTTGAACATTAAATTTGGGA+GGG + chr2_1:11139861-11139880 Msa0194770:CDS 30.0%
ATAGATAGTGTACCTTCATT+AGG - chr2_1:11139973-11139992 None:intergenic 30.0%
GGAAGATGATGTATAATCAA+AGG - chr2_1:11140518-11140537 None:intergenic 30.0%
TTCATTGCTGAAAAATCCAA+AGG - chr2_1:11140552-11140571 None:intergenic 30.0%
TTTCAGCAATGAAAATCTTG+TGG + chr2_1:11140559-11140578 Msa0194770:CDS 30.0%
! ATACAAGCCTTTCTTGATTT+TGG + chr2_1:11140652-11140671 Msa0194770:intron 30.0%
TTGGTATATATACGAGGTAA+TGG + chr2_1:11140671-11140690 Msa0194770:intron 30.0%
! GATTTTATATGATGCTCTCT+AGG + chr2_1:11140700-11140719 Msa0194770:intron 30.0%
CTTAACACCAAACACAAAAT+GGG - chr2_1:11141002-11141021 None:intergenic 30.0%
ATTGCATTATCAATTGCGTA+TGG + chr2_1:11141219-11141238 Msa0194770:intron 30.0%
! TATCAATTGCGTATGGATTA+TGG + chr2_1:11141226-11141245 Msa0194770:intron 30.0%
! TTGAAAAGCACAACAATGAA+AGG + chr2_1:11141296-11141315 Msa0194770:CDS 30.0%
! TGAAAAGCACAACAATGAAA+GGG + chr2_1:11141297-11141316 Msa0194770:CDS 30.0%
GGAAAACAAAATCAATCAGA+TGG + chr2_1:11141391-11141410 Msa0194770:CDS 30.0%
! GGAAGCTCAAAGAATTTTAT+CGG + chr2_1:11141520-11141539 Msa0194770:CDS 30.0%
TTGACATGTTTATGCCATAT+AGG - chr2_1:11141689-11141708 None:intergenic 30.0%
AACATAGACAAAACTCAGAA+TGG - chr2_1:11141780-11141799 None:intergenic 30.0%
CAAGATTATAGAGAAAGTGA+AGG - chr2_1:11141906-11141925 None:intergenic 30.0%
CTTCACTTTCTCTATAATCT+TGG + chr2_1:11141904-11141923 Msa0194770:intron 30.0%
TTGAAATCATTGCAGTACTA+AGG + chr2_1:11142008-11142027 Msa0194770:intron 30.0%
GAATGTCTTCTAAACAGAAT+GGG - chr2_1:11142089-11142108 None:intergenic 30.0%
TGAATGTCTTCTAAACAGAA+TGG - chr2_1:11142090-11142109 None:intergenic 30.0%
AAATGACAACTAAAAGGGAA+CGG - chr2_1:11142159-11142178 None:intergenic 30.0%
ACAGAAAGAATTGATGGAAT+GGG - chr2_1:11142266-11142285 None:intergenic 30.0%
TACAGAAAGAATTGATGGAA+TGG - chr2_1:11142267-11142286 None:intergenic 30.0%
!!! ACTAAGGGTAATTTTTTTGG+TGG + chr2_1:11142290-11142309 Msa0194770:intron 30.0%
GACAATGCATAATATATGCA+AGG - chr2_1:11142338-11142357 None:intergenic 30.0%
TTCTAACCCTCATTTAATGT+TGG + chr2_1:11142551-11142570 Msa0194770:intron 30.0%
GAAAAGACCAACATTAAATG+AGG - chr2_1:11142561-11142580 None:intergenic 30.0%
!! TTGGTCTTTTCAATATTGGT+GGG + chr2_1:11142570-11142589 Msa0194770:intron 30.0%
!!! GTCTTGGTTTTGATGATTTT+TGG + chr2_1:11142671-11142690 Msa0194770:intron 30.0%
TTTCTTATATAAAAGACCGG+AGG + chr2_1:11142699-11142718 Msa0194770:intron 30.0%
TTCTTATATAAAAGACCGGA+GGG + chr2_1:11142700-11142719 Msa0194770:intron 30.0%
TAATAATTTACAGGGGAAAC+CGG - chr2_1:11142746-11142765 None:intergenic 30.0%
! TTTTTGAATGACCTATTAGG+GGG - chr2_1:11142859-11142878 None:intergenic 30.0%
! TGGTTTTTGAATGACCTATT+AGG + chr2_1:11142856-11142875 Msa0194770:intron 30.0%
! GGTTTTTGAATGACCTATTA+GGG + chr2_1:11142857-11142876 Msa0194770:intron 30.0%
! GTTTTTGAATGACCTATTAG+GGG + chr2_1:11142858-11142877 Msa0194770:intron 30.0%
! TTTTTGAATGACCTATTAGG+GGG + chr2_1:11142859-11142878 Msa0194770:intron 30.0%
TCTGTAATATAGGTCATTTC+CGG - chr2_1:11142945-11142964 None:intergenic 30.0%
GAAATGACCTATATTACAGA+GGG + chr2_1:11142945-11142964 Msa0194770:intron 30.0%
TTCAAATGCGATAACGAAAA+AGG + chr2_1:11143057-11143076 Msa0194770:intron 30.0%
GATAACGAAAAAGGAACAAA+GGG + chr2_1:11143066-11143085 Msa0194770:intron 30.0%
TTTATGGCTGTGAAAAGTAA+TGG - chr2_1:11143121-11143140 None:intergenic 30.0%
!! ATGAATCAGGTTGAGATTTA+TGG - chr2_1:11143137-11143156 None:intergenic 30.0%
ACCTGATTCATTATTCTACA+AGG + chr2_1:11143146-11143165 Msa0194770:intron 30.0%
TCCTTGTAGAATAATGAATC+AGG - chr2_1:11143150-11143169 None:intergenic 30.0%
TGTACTATTGTAAAATGAGC+AGG + chr2_1:11143393-11143412 Msa0194770:intron 30.0%
TAAACAAAAGGATTCAAGAC+AGG + chr2_1:11143431-11143450 Msa0194770:CDS 30.0%
! TTTTTCTTCCTCTTGTTCTT+GGG - chr2_1:11143570-11143589 None:intergenic 30.0%
!!! TTTTTTCTTCCTCTTGTTCT+TGG - chr2_1:11143571-11143590 None:intergenic 30.0%
! TCTAAGATAAGATACATGGT+CGG - chr2_1:11143645-11143664 None:intergenic 30.0%
! CCGATACAACAAAGGTTTTA+GGG - chr2_1:11139196-11139215 None:intergenic 35.0%
! CCCTAAAACCTTTGTTGTAT+CGG + chr2_1:11139193-11139212 Msa0194770:five_prime_UTR 35.0%
! TCCGATACAACAAAGGTTTT+AGG - chr2_1:11139197-11139216 None:intergenic 35.0%
AAAAGGTTCCGATACAACAA+AGG - chr2_1:11139204-11139223 None:intergenic 35.0%
TCAAAACTGAATGGAATCAC+CGG - chr2_1:11139328-11139347 None:intergenic 35.0%
! AGCAGAGATTAGCTAATTGT+TGG + chr2_1:11139749-11139768 Msa0194770:CDS 35.0%
! AGAGATTAGCTAATTGTTGG+CGG + chr2_1:11139752-11139771 Msa0194770:CDS 35.0%
ATTAAATTTGGGAGGGATGA+TGG + chr2_1:11139868-11139887 Msa0194770:CDS 35.0%
TTAAATTTGGGAGGGATGAT+GGG + chr2_1:11139869-11139888 Msa0194770:CDS 35.0%
TCATTAGGCCTATCTTTGTA+AGG - chr2_1:11139958-11139977 None:intergenic 35.0%
TACAAAGATAGGCCTAATGA+AGG + chr2_1:11139958-11139977 Msa0194770:CDS 35.0%
TATAATGCGTCCTAACTCAA+CGG - chr2_1:11140058-11140077 None:intergenic 35.0%
GGAAGCTAAATAGAAAACAG+GGG - chr2_1:11140446-11140465 None:intergenic 35.0%
CGGAAGCTAAATAGAAAACA+GGG - chr2_1:11140447-11140466 None:intergenic 35.0%
CATATTATCGATAACTGCTG+CGG - chr2_1:11140467-11140486 None:intergenic 35.0%
TGATGTATAATCAAAGGGAG+TGG - chr2_1:11140512-11140531 None:intergenic 35.0%
ATATGATGCTCTCTAGGTAT+TGG + chr2_1:11140706-11140725 Msa0194770:intron 35.0%
ACTGCAACACTTAATGCAAA+TGG + chr2_1:11140770-11140789 Msa0194770:CDS 35.0%
! AAACTTGCTCATGTTAAAGC+TGG + chr2_1:11140860-11140879 Msa0194770:CDS 35.0%
ACTCACTGCATCATTTATCT+TGG - chr2_1:11140897-11140916 None:intergenic 35.0%
! ATCATCTCCCATTTTGTGTT+TGG + chr2_1:11140992-11141011 Msa0194770:intron 35.0%
GCTTAACACCAAACACAAAA+TGG - chr2_1:11141003-11141022 None:intergenic 35.0%
TCTTCTGCTTATAAGTCTTC+TGG + chr2_1:11141058-11141077 Msa0194770:intron 35.0%
! TTTGTTGTCTGAATGGATGT+AGG + chr2_1:11141273-11141292 Msa0194770:intron 35.0%
CAATCAGATGGTGATAAAGA+AGG + chr2_1:11141403-11141422 Msa0194770:CDS 35.0%
GAAAGGCGAGACAAATTTAA+TGG + chr2_1:11141450-11141469 Msa0194770:CDS 35.0%
! AGCTCAAAGAATTTTATCGG+TGG + chr2_1:11141523-11141542 Msa0194770:CDS 35.0%
! TTTGATAGTCTAGCTGTTTC+TGG + chr2_1:11141616-11141635 Msa0194770:intron 35.0%
!! TCTGAGTTTTGTCTATGTTG+AGG + chr2_1:11141781-11141800 Msa0194770:intron 35.0%
GAATTGACACAATCTGAGTA+GGG - chr2_1:11141839-11141858 None:intergenic 35.0%
TGAATTGACACAATCTGAGT+AGG - chr2_1:11141840-11141859 None:intergenic 35.0%
!!! GAGGGAGTATTGTTTTACAT+GGG - chr2_1:11142137-11142156 None:intergenic 35.0%
!!! GTAATTTTTTTGGTGGTGTC+CGG + chr2_1:11142297-11142316 Msa0194770:intron 35.0%
!!! TAATTTTTTTGGTGGTGTCC+GGG + chr2_1:11142298-11142317 Msa0194770:intron 35.0%
TGCATAATATATGCAAGGTC+CGG - chr2_1:11142333-11142352 None:intergenic 35.0%
TTCTTATAAATAGGACCGGA+GGG - chr2_1:11142453-11142472 None:intergenic 35.0%
TTTCTTATAAATAGGACCGG+AGG - chr2_1:11142454-11142473 None:intergenic 35.0%
!!! GTTGGTCTTTTCAATATTGG+TGG + chr2_1:11142569-11142588 Msa0194770:intron 35.0%
GCAACAACTAATGATTGTCT+TGG + chr2_1:11142655-11142674 Msa0194770:intron 35.0%
GGAAATGACCTATATTACAG+AGG + chr2_1:11142944-11142963 Msa0194770:intron 35.0%
TGCTTTACCCTCTGTAATAT+AGG - chr2_1:11142955-11142974 None:intergenic 35.0%
CGATAACGAAAAAGGAACAA+AGG + chr2_1:11143065-11143084 Msa0194770:intron 35.0%
! TGTGAGGTTTTCGTTTAGAT+AGG + chr2_1:11143173-11143192 Msa0194770:intron 35.0%
! GTTGATTTCATTTCTGCGTT+TGG + chr2_1:11143212-11143231 Msa0194770:intron 35.0%
ATTTCATTTCTGCGTTTGGT+TGG + chr2_1:11143216-11143235 Msa0194770:intron 35.0%
TAATGAAGGTAAGACTCTGA+AGG + chr2_1:11143533-11143552 Msa0194770:CDS 35.0%
TCTTAGAAAATGCGATAGAC+TGG + chr2_1:11143658-11143677 Msa0194770:three_prime_UTR 35.0%
CTTAGAAAATGCGATAGACT+GGG + chr2_1:11143659-11143678 Msa0194770:three_prime_UTR 35.0%
! AATGACATTTTGCGCTTTCT+GGG - chr2_1:11143795-11143814 None:intergenic 35.0%
! AAATGACATTTTGCGCTTTC+TGG - chr2_1:11143796-11143815 None:intergenic 35.0%
! TTGTATCGGAACCTTTTCGT+CGG + chr2_1:11139207-11139226 Msa0194770:five_prime_UTR 40.0%
! ATCTGGGTAGCACTGAATTA+GGG - chr2_1:11139465-11139484 None:intergenic 40.0%
TTAAGTAGAGAGAGAGAGAG+AGG + chr2_1:11139721-11139740 Msa0194770:intron 40.0%
TTCAACTTGCGATAGTCCAA+GGG - chr2_1:11139847-11139866 None:intergenic 40.0%
TTGTGCAGCCTTACAAAGAT+AGG + chr2_1:11139947-11139966 Msa0194770:CDS 40.0%
TTCTTTCTGCCAAACTTGTC+TGG + chr2_1:11140127-11140146 Msa0194770:CDS 40.0%
TCTTTCTGCCAAACTTGTCT+GGG + chr2_1:11140128-11140147 Msa0194770:CDS 40.0%
TATGTGGATGTCAATGCGAA+TGG - chr2_1:11140154-11140173 None:intergenic 40.0%
ATCCACATACTAGACAATGC+AGG + chr2_1:11140165-11140184 Msa0194770:CDS 40.0%
TCCACATACTAGACAATGCA+GGG + chr2_1:11140166-11140185 Msa0194770:CDS 40.0%
! CAGTAAGTTGGGTAAGAAAG+AGG - chr2_1:11140220-11140239 None:intergenic 40.0%
TGCTGCAAATATTGCTGCAT+TGG + chr2_1:11140306-11140325 Msa0194770:CDS 40.0%
! CATCTCTGAAGACATTCAGA+AGG + chr2_1:11140329-11140348 Msa0194770:CDS 40.0%
AAATAGAAAACAGGGGCGAA+AGG - chr2_1:11140439-11140458 None:intergenic 40.0%
GCGGAAGCTAAATAGAAAAC+AGG - chr2_1:11140448-11140467 None:intergenic 40.0%
ATGAAGAGGCTGTAATGACT+GGG + chr2_1:11140741-11140760 Msa0194770:CDS 40.0%
TGTGTGCAATTCAAAAGCCT+GGG + chr2_1:11140798-11140817 Msa0194770:CDS 40.0%
!! CATAGGCATTGAAAGAGTGA+GGG - chr2_1:11140948-11140967 None:intergenic 40.0%
!! TCATAGGCATTGAAAGAGTG+AGG - chr2_1:11140949-11140968 None:intergenic 40.0%
AGATGCATCGTTCTGTTCAT+AGG - chr2_1:11140965-11140984 None:intergenic 40.0%
TGCAATGAAAGGCAAACAGA+AGG - chr2_1:11141119-11141138 None:intergenic 40.0%
!!! ATTTTGTTTTCCCCCTAACG+TGG - chr2_1:11141383-11141402 None:intergenic 40.0%
GAATGTGATGCCACATCATT+AGG + chr2_1:11141472-11141491 Msa0194770:CDS 40.0%
! TACTTGGTCTTTCACTTCTC+AGG + chr2_1:11141810-11141829 Msa0194770:intron 40.0%
! ACTTGGTCTTTCACTTCTCA+GGG + chr2_1:11141811-11141830 Msa0194770:intron 40.0%
CACTCTATTTAGCTGCACTT+AGG + chr2_1:11141963-11141982 Msa0194770:intron 40.0%
TGTCTTCTAAACAGAATGGG+TGG - chr2_1:11142086-11142105 None:intergenic 40.0%
!!! GGAGGGAGTATTGTTTTACA+TGG - chr2_1:11142138-11142157 None:intergenic 40.0%
!!! AATTTTTTTGGTGGTGTCCG+GGG + chr2_1:11142299-11142318 Msa0194770:intron 40.0%
CATAATATATGCAAGGTCCG+GGG - chr2_1:11142331-11142350 None:intergenic 40.0%
GCATAATATATGCAAGGTCC+GGG - chr2_1:11142332-11142351 None:intergenic 40.0%
! AGAGCTTAACTCAGTTGGTA+AGG - chr2_1:11142360-11142379 None:intergenic 40.0%
TACCAACTGAGTTAAGCTCT+TGG + chr2_1:11142360-11142379 Msa0194770:intron 40.0%
TAAGCTCTTGGAGACAACTA+AGG + chr2_1:11142372-11142391 Msa0194770:intron 40.0%
AAGCTCTTGGAGACAACTAA+GGG + chr2_1:11142373-11142392 Msa0194770:intron 40.0%
! ACCGGAGGGAGTATATTATA+GGG - chr2_1:11142439-11142458 None:intergenic 40.0%
!! GTAGGTCATTGACTCATTTC+CGG + chr2_1:11142724-11142743 Msa0194770:intron 40.0%
!!! GTTTTGGAATACCCCCTAAT+AGG + chr2_1:11142796-11142815 Msa0194770:intron 40.0%
!!! GTTTTGGAATACCCCCTAAT+AGG - chr2_1:11142796-11142815 None:intergenic 40.0%
AAAGTTTACAGAGGGGAAAC+CGG + chr2_1:11142923-11142942 Msa0194770:intron 40.0%
GAACAAAGGGAGTAATGTAG+AGG + chr2_1:11143079-11143098 Msa0194770:intron 40.0%
! TATTCTACAAGGAGTGTGTG+AGG + chr2_1:11143157-11143176 Msa0194770:intron 40.0%
! TGTTTCTGCTTCCGACGAAA+AGG - chr2_1:11139221-11139240 None:intergenic 45.0%
! CATCTGGGTAGCACTGAATT+AGG - chr2_1:11139466-11139485 None:intergenic 45.0%
TCTTCTATCAGAGCTTCGAG+TGG + chr2_1:11139810-11139829 Msa0194770:CDS 45.0%
TCAACTTGCGATAGTCCAAG+GGG - chr2_1:11139846-11139865 None:intergenic 45.0%
GTTCAACTTGCGATAGTCCA+AGG - chr2_1:11139848-11139867 None:intergenic 45.0%
CTTCACTGAATTCTCTCCCA+TGG + chr2_1:11139993-11140012 Msa0194770:CDS 45.0%
TCAAAGGAAGGATCAGCCAT+GGG - chr2_1:11140012-11140031 None:intergenic 45.0%
TTAGGACGCATTATAGACCG+CGG + chr2_1:11140063-11140082 Msa0194770:CDS 45.0%
GCATTATAGACCGCGGTTTA+CGG + chr2_1:11140070-11140089 Msa0194770:CDS 45.0%
CATTATAGACCGCGGTTTAC+GGG + chr2_1:11140071-11140090 Msa0194770:CDS 45.0%
ACCCTGCATTGTCTAGTATG+TGG - chr2_1:11140170-11140189 None:intergenic 45.0%
AAGGTCACGCTGTTAAACTG+AGG - chr2_1:11140420-11140439 None:intergenic 45.0%
AATCCAAAGGTGACTGCAAC+TGG - chr2_1:11140539-11140558 None:intergenic 45.0%
ACAGCCTCTTCATGGTATGT+CGG - chr2_1:11140734-11140753 None:intergenic 45.0%
CAGTCATTACAGCCTCTTCA+TGG - chr2_1:11140742-11140761 None:intergenic 45.0%
CATGAAGAGGCTGTAATGAC+TGG + chr2_1:11140740-11140759 Msa0194770:CDS 45.0%
GTGTGTGCAATTCAAAAGCC+TGG + chr2_1:11140797-11140816 Msa0194770:CDS 45.0%
GTGTGCAATTCAAAAGCCTG+GGG + chr2_1:11140799-11140818 Msa0194770:CDS 45.0%
TGTGCAATTCAAAAGCCTGG+GGG + chr2_1:11140800-11140819 Msa0194770:CDS 45.0%
GCACACTTCACTGCAATGAA+AGG - chr2_1:11141130-11141149 None:intergenic 45.0%
ACGACATTCTTCCTCTGTTG+CGG + chr2_1:11141336-11141355 Msa0194770:CDS 45.0%
CTAGACCAGTTGAAGCTGAA+AGG + chr2_1:11141433-11141452 Msa0194770:CDS 45.0%
CTGCACTTGTCCTAATGATG+TGG - chr2_1:11141485-11141504 None:intergenic 45.0%
ACAAGTGCAGAGTAGCAAGA+AGG + chr2_1:11141495-11141514 Msa0194770:CDS 45.0%
! AAAGCTTCTCTAGCTTCTCG+TGG + chr2_1:11141869-11141888 Msa0194770:CDS 45.0%
GACAACTAAAAGGGAACGGA+GGG - chr2_1:11142155-11142174 None:intergenic 45.0%
TGACAACTAAAAGGGAACGG+AGG - chr2_1:11142156-11142175 None:intergenic 45.0%
CTCCAAGAGCTTAACTCAGT+TGG - chr2_1:11142365-11142384 None:intergenic 45.0%
! GAGGGAGTATATTATAGGGG+GGG - chr2_1:11142435-11142454 None:intergenic 45.0%
! GGAGGGAGTATATTATAGGG+GGG - chr2_1:11142436-11142455 None:intergenic 45.0%
! CGGAGGGAGTATATTATAGG+GGG - chr2_1:11142437-11142456 None:intergenic 45.0%
! CCGGAGGGAGTATATTATAG+GGG - chr2_1:11142438-11142457 None:intergenic 45.0%
CCCCTATAATATACTCCCTC+CGG + chr2_1:11142435-11142454 Msa0194770:intron 45.0%
! GACCGGAGGGAGTATATTAT+AGG - chr2_1:11142440-11142459 None:intergenic 45.0%
TATAAAAGACCGGAGGGAGT+AGG + chr2_1:11142706-11142725 Msa0194770:intron 45.0%
GCAGTTAGAGCAGTGTCAAT+TGG - chr2_1:11143504-11143523 None:intergenic 45.0%
ATTGACACTGCTCTAACTGC+TGG + chr2_1:11143504-11143523 Msa0194770:CDS 45.0%
TTGACACTGCTCTAACTGCT+GGG + chr2_1:11143505-11143524 Msa0194770:CDS 45.0%
!!! AAAATTTTCAAAAAAAATTT+TGG + chr2_1:11142471-11142490 Msa0194770:intron 5.0%
!! ATAAAAAATAATAATTTACA+GGG - chr2_1:11142754-11142773 None:intergenic 5.0%
!! AATAAAAAATAATAATTTAC+AGG - chr2_1:11142755-11142774 None:intergenic 5.0%
TAGAGAGAGAGAGAGAGGCA+TGG + chr2_1:11139726-11139745 Msa0194770:intron 50.0%
CTATCAGAGCTTCGAGTGGA+TGG + chr2_1:11139814-11139833 Msa0194770:CDS 50.0%
TGTCTCGCCCAATTGGATCT+CGG - chr2_1:11139899-11139918 None:intergenic 50.0%
CTCAAAGGAAGGATCAGCCA+TGG - chr2_1:11140013-11140032 None:intergenic 50.0%
AACTCAACGGCAGATTCTCC+AGG - chr2_1:11140045-11140064 None:intergenic 50.0%
GGAGAATCTGCCGTTGAGTT+AGG + chr2_1:11140045-11140064 Msa0194770:CDS 50.0%
CTCTACTTTCCCGTAAACCG+CGG - chr2_1:11140083-11140102 None:intergenic 50.0%
GCAGAGCGATTCAGTGTCAA+TGG - chr2_1:11140106-11140125 None:intergenic 50.0%
AGAAGGCCTGAATGCTCGTT+GGG + chr2_1:11140346-11140365 Msa0194770:CDS 50.0%
AGTTGTAGTGCATCCTCCTG+AGG + chr2_1:11140387-11140406 Msa0194770:CDS 50.0%
AAACTGAGGAAGCTGACCTC+AGG - chr2_1:11140406-11140425 None:intergenic 50.0%
CTTCCAGTTGCAGTCACCTT+TGG + chr2_1:11140533-11140552 Msa0194770:CDS 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr2_1:11140618-11140637 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr2_1:11140617-11140636 None:intergenic 50.0%
GGATCCGACATACCATGAAG+AGG + chr2_1:11140727-11140746 Msa0194770:CDS 50.0%
GTGCAATTCAAAAGCCTGGG+GGG + chr2_1:11140801-11140820 Msa0194770:CDS 50.0%
ACATTCTTCCTCTGTTGCGG+TGG + chr2_1:11141339-11141358 Msa0194770:CDS 50.0%
ACATACATCCACCGCAACAG+AGG - chr2_1:11141350-11141369 None:intergenic 50.0%
TCTGTTGCGGTGGATGTATG+TGG + chr2_1:11141349-11141368 Msa0194770:CDS 50.0%
TCTCGCCTTTCAGCTTCAAC+TGG - chr2_1:11141441-11141460 None:intergenic 50.0%
GTGCAGAGTAGCAAGAAGGA+TGG + chr2_1:11141499-11141518 Msa0194770:CDS 50.0%
TGACACCTTACCAGCTTGAG+GGG - chr2_1:11141549-11141568 None:intergenic 50.0%
CTGACACCTTACCAGCTTGA+GGG - chr2_1:11141550-11141569 None:intergenic 50.0%
ACTGACACCTTACCAGCTTG+AGG - chr2_1:11141551-11141570 None:intergenic 50.0%
AGTCAATGACCTACTCCCTC+CGG - chr2_1:11142718-11142737 None:intergenic 50.0%
!! ATTTCCTGCGCTGGTTCTTC+TGG - chr2_1:11143465-11143484 None:intergenic 50.0%
ACTGTCTTGATTTCCTGCGC+TGG - chr2_1:11143474-11143493 None:intergenic 50.0%
ACTGCTGGGCAGAGTAATGA+AGG + chr2_1:11143519-11143538 Msa0194770:CDS 50.0%
CTGTCAAGCCCAAGAACAAG+AGG + chr2_1:11143559-11143578 Msa0194770:CDS 50.0%
CAGAGCTTCGAGTGGATGGT+CGG + chr2_1:11139818-11139837 Msa0194770:CDS 55.0%
AGAGCTTCGAGTGGATGGTC+GGG + chr2_1:11139819-11139838 Msa0194770:CDS 55.0%
TGGGTCTGCCGAGATCCAAT+TGG + chr2_1:11139888-11139907 Msa0194770:CDS 55.0%
GGGTCTGCCGAGATCCAATT+GGG + chr2_1:11139889-11139908 Msa0194770:CDS 55.0%
TGACACGTGTCTCGCCCAAT+TGG - chr2_1:11139906-11139925 None:intergenic 55.0%
GCTGATCCTTCCTTTGAGCC+TGG + chr2_1:11140015-11140034 Msa0194770:CDS 55.0%
CAACGGCAGATTCTCCAGGA+CGG - chr2_1:11140041-11140060 None:intergenic 55.0%
GCGAATGGCCCAGACAAGTT+TGG - chr2_1:11140139-11140158 None:intergenic 55.0%
CAGAAGGCCTGAATGCTCGT+TGG + chr2_1:11140345-11140364 Msa0194770:CDS 55.0%
GAAGGCCTGAATGCTCGTTG+GGG + chr2_1:11140347-11140366 Msa0194770:CDS 55.0%
AAGGCCTGAATGCTCGTTGG+GGG + chr2_1:11140348-11140367 Msa0194770:CDS 55.0%
GAGAGAGAGAGAGAGAGGGA+GGG - chr2_1:11140614-11140633 None:intergenic 55.0%
AGAGAGAGAGAGAGAGAGGG+AGG - chr2_1:11140615-11140634 None:intergenic 55.0%
AATTCAAAAGCCTGGGGGGC+AGG + chr2_1:11140805-11140824 Msa0194770:CDS 55.0%
ATTCAAAAGCCTGGGGGGCA+GGG + chr2_1:11140806-11140825 Msa0194770:CDS 55.0%
TGTGGAACCACTGCCACGTT+AGG + chr2_1:11141367-11141386 Msa0194770:CDS 55.0%
GTGGAACCACTGCCACGTTA+GGG + chr2_1:11141368-11141387 Msa0194770:CDS 55.0%
TGGAACCACTGCCACGTTAG+GGG + chr2_1:11141369-11141388 Msa0194770:CDS 55.0%
! TTTTCCCCCTAACGTGGCAG+TGG - chr2_1:11141377-11141396 None:intergenic 55.0%
TAAGCCAGAAGAACCAGCGC+AGG + chr2_1:11143458-11143477 Msa0194770:CDS 55.0%
GAGCTTCGAGTGGATGGTCG+GGG + chr2_1:11139820-11139839 Msa0194770:CDS 60.0%
AGGCCTGAATGCTCGTTGGG+GGG + chr2_1:11140349-11140368 Msa0194770:CDS 60.0%
TCTCCCCCCAACGAGCATTC+AGG - chr2_1:11140355-11140374 None:intergenic 60.0%
TGAATGCTCGTTGGGGGGAG+AGG + chr2_1:11140354-11140373 Msa0194770:CDS 60.0%
CTGAGGAAGCTGACCTCAGG+AGG - chr2_1:11140403-11140422 None:intergenic 60.0%
GAGAGAGAGAGGGAGGGAGA+GGG - chr2_1:11140608-11140627 None:intergenic 60.0%
AGAGAGAGAGAGGGAGGGAG+AGG - chr2_1:11140609-11140628 None:intergenic 60.0%
GGAACCACTGCCACGTTAGG+GGG + chr2_1:11141370-11141389 Msa0194770:CDS 60.0%
TTATCGGTGGCCCCTCAAGC+TGG + chr2_1:11141536-11141555 Msa0194770:CDS 60.0%
GGACGGCCAGGCTCAAAGGA+AGG - chr2_1:11140024-11140043 None:intergenic 65.0%
TCCTTTGAGCCTGGCCGTCC+TGG + chr2_1:11140024-11140043 Msa0194770:CDS 65.0%
TCCAGGACGGCCAGGCTCAA+AGG - chr2_1:11140028-11140047 None:intergenic 65.0%
GCAGATTCTCCAGGACGGCC+AGG - chr2_1:11140036-11140055 None:intergenic 65.0%
TGCTCGTTGGGGGGAGAGGA+TGG + chr2_1:11140358-11140377 Msa0194770:CDS 65.0%
AGAGAGGGAGGGAGAGGGAG+GGG - chr2_1:11140603-11140622 None:intergenic 65.0%
GAGAGAGGGAGGGAGAGGGA+GGG - chr2_1:11140604-11140623 None:intergenic 65.0%
AGAGAGAGGGAGGGAGAGGG+AGG - chr2_1:11140605-11140624 None:intergenic 65.0%
TGAAAGACACCCTGCCCCCC+AGG - chr2_1:11140818-11140837 None:intergenic 65.0%
GGTGGCCCCTCAAGCTGGTA+AGG + chr2_1:11141541-11141560 Msa0194770:intron 65.0%
AAGGTCCGGGGTTCGAACCC+CGG - chr2_1:11142319-11142338 None:intergenic 65.0%
AGTGGATGGTCGGGGCCCCT+TGG + chr2_1:11139828-11139847 Msa0194770:CDS 70.0%
GAGAGGGAGGGAGAGGGAGG+GGG - chr2_1:11140602-11140621 None:intergenic 70.0%
GGTGTCCGGGGTTCGAACCC+CGG + chr2_1:11142311-11142330 Msa0194770:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 11139128 11143846 11139128 ID=Msa0194770;Name=Msa0194770
chr2_1 mRNA 11139128 11143846 11139128 ID=Msa0194770-mRNA-1;Parent=Msa0194770;Name=Msa0194770-mRNA-1;_AED=0.10;_eAED=0.10;_QI=133|1|1|1|0.85|0.75|8|232|449
chr2_1 exon 11139128 11139244 11139128 ID=Msa0194770-mRNA-1:exon:4949;Parent=Msa0194770-mRNA-1
chr2_1 exon 11139729 11140187 11139729 ID=Msa0194770-mRNA-1:exon:4950;Parent=Msa0194770-mRNA-1
chr2_1 exon 11140294 11140408 11140294 ID=Msa0194770-mRNA-1:exon:4951;Parent=Msa0194770-mRNA-1
chr2_1 exon 11140500 11140580 11140500 ID=Msa0194770-mRNA-1:exon:4952;Parent=Msa0194770-mRNA-1
chr2_1 exon 11140722 11140910 11140722 ID=Msa0194770-mRNA-1:exon:4953;Parent=Msa0194770-mRNA-1
chr2_1 exon 11141295 11141557 11141295 ID=Msa0194770-mRNA-1:exon:4954;Parent=Msa0194770-mRNA-1
chr2_1 exon 11141832 11141890 11141832 ID=Msa0194770-mRNA-1:exon:4955;Parent=Msa0194770-mRNA-1
chr2_1 exon 11143415 11143846 11143415 ID=Msa0194770-mRNA-1:exon:4956;Parent=Msa0194770-mRNA-1
chr2_1 five_prime_UTR 11139128 11139244 11139128 ID=Msa0194770-mRNA-1:five_prime_utr;Parent=Msa0194770-mRNA-1
chr2_1 five_prime_UTR 11139729 11139744 11139729 ID=Msa0194770-mRNA-1:five_prime_utr;Parent=Msa0194770-mRNA-1
chr2_1 CDS 11139745 11140187 11139745 ID=Msa0194770-mRNA-1:cds;Parent=Msa0194770-mRNA-1
chr2_1 CDS 11140294 11140408 11140294 ID=Msa0194770-mRNA-1:cds;Parent=Msa0194770-mRNA-1
chr2_1 CDS 11140500 11140580 11140500 ID=Msa0194770-mRNA-1:cds;Parent=Msa0194770-mRNA-1
chr2_1 CDS 11140722 11140910 11140722 ID=Msa0194770-mRNA-1:cds;Parent=Msa0194770-mRNA-1
chr2_1 CDS 11141295 11141557 11141295 ID=Msa0194770-mRNA-1:cds;Parent=Msa0194770-mRNA-1
chr2_1 CDS 11141832 11141890 11141832 ID=Msa0194770-mRNA-1:cds;Parent=Msa0194770-mRNA-1
chr2_1 CDS 11143415 11143614 11143415 ID=Msa0194770-mRNA-1:cds;Parent=Msa0194770-mRNA-1
chr2_1 three_prime_UTR 11143615 11143846 11143615 ID=Msa0194770-mRNA-1:three_prime_utr;Parent=Msa0194770-mRNA-1
Gene Sequence

>Msa0194770

ATGGAGCAGAGATTAGCTAATTGTTGGCGGTTGACAGTTAACGAAAAGAAATTCATTGAAACTGCTCTTCTATCAGAGCTTCGAGTGGATGGTCGGGGCCCCTTGGACTATCGCAAGTTGAACATTAAATTTGGGAGGGATGATGGGTCTGCCGAGATCCAATTGGGCGAGACACGTGTCATGAGTTTTGTGACTGCTCAACTTGTGCAGCCTTACAAAGATAGGCCTAATGAAGGTACACTATCTATCTTCACTGAATTCTCTCCCATGGCTGATCCTTCCTTTGAGCCTGGCCGTCCTGGAGAATCTGCCGTTGAGTTAGGACGCATTATAGACCGCGGTTTACGGGAAAGTAGAGCCATTGACACTGAATCGCTCTGCATTCTTTCTGCCAAACTTGTCTGGGCCATTCGCATTGACATCCACATACTAGACAATGCAGGAAATCTTGTTGATGCTGCAAATATTGCTGCATTGGCATCTCTGAAGACATTCAGAAGGCCTGAATGCTCGTTGGGGGGAGAGGATGGTCAACAAGTTGTAGTGCATCCTCCTGAGGTGCGCGAGCCACTCCCTTTGATTATACATCATCTTCCAGTTGCAGTCACCTTTGGATTTTTCAGCAATGAAAATCTTGTGGTATTGGATCCGACATACCATGAAGAGGCTGTAATGACTGGGCGCATGACTGCAACACTTAATGCAAATGGTGATGTGTGTGCAATTCAAAAGCCTGGGGGGCAGGGTGTCTTTCAACGAGTTATCATGCATTGCTTGAAACTTGCTCATGTTAAAGCTGGTGATATTACAGCCAAGATAAATGATGCAGTTGAAAAGCACAACAATGAAAGGGCACTACAGAAGATTAAACGACATTCTTCCTCTGTTGCGGTGGATGTATGTGGAACCACTGCCACGTTAGGGGGAAAACAAAATCAATCAGATGGTGATAAAGAAGGTAGTCATCTAGACCAGTTGAAGCTGAAAGGCGAGACAAATTTAATGGAATGTGATGCCACATCATTAGGACAAGTGCAGAGTAGCAAGAAGGATGGAAGCTCAAAGAATTTTATCGGTGGCCCCTCAAGCTGGGATCCCTACTCAGATTGTGTCAATTCAGATCTTCTAAAAGCTTCTCTAGCTTCTCGTGGACAATCAACTTCTAGTAAACAAAAGGATTCAAGACAGGAGACTAAGCCAGAAGAACCAGCGCAGGAAATCAAGACAGTTTCTGCACCAATTGACACTGCTCTAACTGCTGGGCAGAGTAATGAAGGTAAGACTCTGAAGGATGCTGTCAAGCCCAAGAACAAGAGGAAGAAAAAAACATCTTCCAATAATGGGAATTAA

Protein sequence

>Msa0194770

MEQRLANCWRLTVNEKKFIETALLSELRVDGRGPLDYRKLNIKFGRDDGSAEIQLGETRVMSFVTAQLVQPYKDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAIDTESLCILSAKLVWAIRIDIHILDNAGNLVDAANIAALASLKTFRRPECSLGGEDGQQVVVHPPEVREPLPLIIHHLPVAVTFGFFSNENLVVLDPTYHEEAVMTGRMTATLNANGDVCAIQKPGGQGVFQRVIMHCLKLAHVKAGDITAKINDAVEKHNNERALQKIKRHSSSVAVDVCGTTATLGGKQNQSDGDKEGSHLDQLKLKGETNLMECDATSLGQVQSSKKDGSSKNFIGGPSSWDPYSDCVNSDLLKASLASRGQSTSSKQKDSRQETKPEEPAQEIKTVSAPIDTALTAGQSNEGKTLKDAVKPKNKRKKKTSSNNGN*