Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0194770 | XP_003593906.1 | 96.437 | 449 | 16 | 0 | 1 | 449 | 1 | 449 | 0.0 | 899 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0194770 | sp|Q9M209|CER7_ARATH | 60.449 | 445 | 147 | 6 | 1 | 433 | 1 | 428 | 0.0 | 518 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0194770 | G7IP72 | 96.437 | 449 | 16 | 0 | 1 | 449 | 1 | 449 | 0.0 | 899 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0164770 | Msa0194770 | 0.822002 | 2.990083e-53 | -8.615850e-47 |
Msa0194770 | Msa0236650 | 0.926900 | 2.480664e-91 | -8.615850e-47 |
Msa0194770 | Msa0297630 | 0.922618 | 7.777543e-89 | -8.615850e-47 |
Msa0194770 | Msa0482200 | 0.850625 | 1.504932e-60 | -8.615850e-47 |
Msa0194770 | Msa0485510 | 0.842083 | 3.210872e-58 | -8.615850e-47 |
Msa0194770 | Msa0659050 | 0.820817 | 5.612968e-53 | -8.615850e-47 |
Msa0194770 | Msa0728870 | 0.802432 | 5.627377e-49 | -8.615850e-47 |
Msa0194770 | Msa1225720 | 0.861778 | 8.074716e-64 | -8.615850e-47 |
Msa0194770 | Msa1258390 | 0.846433 | 2.178583e-59 | -8.615850e-47 |
Msa0194770 | Msa1382140 | 0.983131 | 6.521612e-157 | -8.615850e-47 |
Msa0194770 | Msa1444240 | 0.854767 | 9.884601e-62 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0194770 | MtrunA17_Chr2g0285831 | 96.437 | 449 | 16 | 0 | 1 | 449 | 1 | 449 | 0.0 | 899 |
Msa0194770 | MtrunA17_Chr1g0180521 | 90.816 | 294 | 27 | 0 | 1 | 294 | 1 | 294 | 0.0 | 569 |
Msa0194770 | MtrunA17_Chr1g0160941 | 30.970 | 268 | 165 | 8 | 11 | 264 | 4 | 265 | 2.03e-29 | 116 |
Msa0194770 | MtrunA17_Chr8g0373091 | 29.368 | 269 | 168 | 7 | 11 | 264 | 4 | 265 | 1.12e-26 | 108 |
Msa0194770 | MtrunA17_Chr1g0146281 | 26.259 | 278 | 186 | 6 | 17 | 278 | 28 | 302 | 2.92e-22 | 96.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0194770 | AT3G60500.3 | 60.449 | 445 | 147 | 6 | 1 | 433 | 1 | 428 | 0.0 | 518 |
Msa0194770 | AT3G60500.2 | 60.449 | 445 | 147 | 6 | 1 | 433 | 1 | 428 | 0.0 | 518 |
Msa0194770 | AT3G60500.1 | 60.449 | 445 | 147 | 6 | 1 | 433 | 1 | 428 | 0.0 | 518 |
Msa0194770 | AT3G60500.4 | 63.969 | 383 | 117 | 5 | 1 | 377 | 1 | 368 | 3.22e-171 | 485 |
Msa0194770 | AT3G12990.1 | 70.861 | 302 | 88 | 0 | 1 | 302 | 1 | 302 | 8.28e-159 | 451 |
Msa0194770 | AT3G12990.3 | 70.861 | 302 | 88 | 0 | 1 | 302 | 1 | 302 | 8.28e-159 | 451 |
Msa0194770 | AT3G12990.4 | 72.535 | 284 | 78 | 0 | 1 | 284 | 1 | 284 | 6.58e-151 | 430 |
Msa0194770 | AT3G12990.2 | 75.234 | 214 | 53 | 0 | 1 | 214 | 1 | 214 | 1.97e-116 | 340 |
Msa0194770 | AT3G07750.1 | 30.741 | 270 | 163 | 9 | 11 | 264 | 3 | 264 | 5.43e-28 | 112 |
Msa0194770 | AT3G07750.2 | 30.741 | 270 | 163 | 9 | 11 | 264 | 3 | 264 | 5.43e-28 | 112 |
Msa0194770 | AT1G60080.1 | 28.253 | 269 | 175 | 5 | 17 | 269 | 26 | 292 | 6.36e-24 | 101 |
Find 122 sgRNAs with CRISPR-Local
Find 356 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCAAGTTGAACATTAAATT+TGG | 0.095631 | 2_1:+11139856 | Msa0194770:CDS |
CATAACTTAATTCCCATTAT+TGG | 0.197437 | 2_1:-11143598 | None:intergenic |
TTCTTTCTGCCAAACTTGTC+TGG | 0.208475 | 2_1:+11140127 | Msa0194770:CDS |
ATTTCCTGCGCTGGTTCTTC+TGG | 0.247600 | 2_1:-11143462 | None:intergenic |
TCCTTTGAGCCTGGCCGTCC+TGG | 0.261790 | 2_1:+11140024 | Msa0194770:CDS |
CTTCCAGTTGCAGTCACCTT+TGG | 0.284591 | 2_1:+11140533 | Msa0194770:CDS |
CATTATAGACCGCGGTTTAC+GGG | 0.295153 | 2_1:+11140071 | Msa0194770:CDS |
GTATATTTGTTTGTTCATTT+AGG | 0.315602 | 2_1:+11143716 | Msa0194770:three_prime_UTR |
GAAAGGCGAGACAAATTTAA+TGG | 0.327208 | 2_1:+11141450 | Msa0194770:CDS |
GCATTATAGACCGCGGTTTA+CGG | 0.332870 | 2_1:+11140070 | Msa0194770:CDS |
AATCCAAAGGTGACTGCAAC+TGG | 0.344185 | 2_1:-11140536 | None:intergenic |
GAATGTGATGCCACATCATT+AGG | 0.345051 | 2_1:+11141472 | Msa0194770:CDS |
GGAGAATCTGCCGTTGAGTT+AGG | 0.366917 | 2_1:+11140045 | Msa0194770:CDS |
GCAAGTTGAACATTAAATTT+GGG | 0.368287 | 2_1:+11139857 | Msa0194770:CDS |
ATTAAATTTGGGAGGGATGA+TGG | 0.374567 | 2_1:+11139868 | Msa0194770:CDS |
AGTGGATGGTCGGGGCCCCT+TGG | 0.390912 | 2_1:+11139828 | Msa0194770:CDS |
TGTGGAACCACTGCCACGTT+AGG | 0.394002 | 2_1:+11141367 | Msa0194770:CDS |
AGAAGGCCTGAATGCTCGTT+GGG | 0.394350 | 2_1:+11140346 | Msa0194770:CDS |
TCTCGCCTTTCAGCTTCAAC+TGG | 0.394391 | 2_1:-11141438 | None:intergenic |
TCATTAGGCCTATCTTTGTA+AGG | 0.401300 | 2_1:-11139955 | None:intergenic |
CCCTAAAACCTTTGTTGTAT+CGG | 0.403915 | 2_1:+11139193 | Msa0194770:five_prime_UTR |
ATAGATAGTGTACCTTCATT+AGG | 0.408385 | 2_1:-11139970 | None:intergenic |
ACTCACTGCATCATTTATCT+TGG | 0.411650 | 2_1:-11140894 | None:intergenic |
GCGAATGGCCCAGACAAGTT+TGG | 0.413491 | 2_1:-11140136 | None:intergenic |
TCTTTCTGCCAAACTTGTCT+GGG | 0.424579 | 2_1:+11140128 | Msa0194770:CDS |
CAGTCATTACAGCCTCTTCA+TGG | 0.425419 | 2_1:-11140739 | None:intergenic |
TTGTGCAGCCTTACAAAGAT+AGG | 0.432049 | 2_1:+11139947 | Msa0194770:CDS |
TCTTAGAAAATGCGATAGAC+TGG | 0.437829 | 2_1:+11143658 | Msa0194770:three_prime_UTR |
GCTGATCCTTCCTTTGAGCC+TGG | 0.439737 | 2_1:+11140015 | Msa0194770:CDS |
CATGAAGAGGCTGTAATGAC+TGG | 0.448208 | 2_1:+11140740 | Msa0194770:CDS |
ATTGACACTGCTCTAACTGC+TGG | 0.450510 | 2_1:+11143504 | Msa0194770:CDS |
TGACACGTGTCTCGCCCAAT+TGG | 0.455639 | 2_1:-11139903 | None:intergenic |
AGCAGAGATTAGCTAATTGT+TGG | 0.456222 | 2_1:+11139749 | Msa0194770:CDS |
GCAGTTAGAGCAGTGTCAAT+TGG | 0.458988 | 2_1:-11143501 | None:intergenic |
AGAGCTTCGAGTGGATGGTC+GGG | 0.470323 | 2_1:+11139819 | Msa0194770:CDS |
ATCAACTTCTAGTAAACAAA+AGG | 0.472420 | 2_1:+11143419 | Msa0194770:CDS |
TGGGTCTGCCGAGATCCAAT+TGG | 0.473726 | 2_1:+11139888 | Msa0194770:CDS |
TGTTTCTGCTTCCGACGAAA+AGG | 0.477764 | 2_1:-11139218 | None:intergenic |
GTGGAACCACTGCCACGTTA+GGG | 0.484142 | 2_1:+11141368 | Msa0194770:CDS |
GCAGATTCTCCAGGACGGCC+AGG | 0.492915 | 2_1:-11140033 | None:intergenic |
TGCTGCAAATATTGCTGCAT+TGG | 0.500659 | 2_1:+11140306 | Msa0194770:CDS |
GGGTCTGCCGAGATCCAATT+GGG | 0.507284 | 2_1:+11139889 | Msa0194770:CDS |
TTAAATTTGGGAGGGATGAT+GGG | 0.508701 | 2_1:+11139869 | Msa0194770:CDS |
GGAAGATGATGTATAATCAA+AGG | 0.510424 | 2_1:-11140515 | None:intergenic |
TTGAAAAGCACAACAATGAA+AGG | 0.511669 | 2_1:+11141296 | Msa0194770:CDS |
AGAGATTAGCTAATTGTTGG+CGG | 0.512799 | 2_1:+11139752 | Msa0194770:CDS |
AACTCAACGGCAGATTCTCC+AGG | 0.512885 | 2_1:-11140042 | None:intergenic |
GTGTGTGCAATTCAAAAGCC+TGG | 0.513608 | 2_1:+11140797 | Msa0194770:CDS |
CAGAGCTTCGAGTGGATGGT+CGG | 0.514274 | 2_1:+11139818 | Msa0194770:CDS |
GAAGATGATGTATAATCAAA+GGG | 0.519406 | 2_1:-11140514 | None:intergenic |
ACGACATTCTTCCTCTGTTG+CGG | 0.519551 | 2_1:+11141336 | Msa0194770:CDS |
ACTGTCTTGATTTCCTGCGC+TGG | 0.521832 | 2_1:-11143471 | None:intergenic |
CTATCAGAGCTTCGAGTGGA+TGG | 0.523011 | 2_1:+11139814 | Msa0194770:CDS |
TCCAGGACGGCCAGGCTCAA+AGG | 0.523314 | 2_1:-11140025 | None:intergenic |
AAACTTGCTCATGTTAAAGC+TGG | 0.525982 | 2_1:+11140860 | Msa0194770:CDS |
GCAGAGCGATTCAGTGTCAA+TGG | 0.527593 | 2_1:-11140103 | None:intergenic |
TGAATTGACACAATCTGAGT+AGG | 0.528375 | 2_1:-11141837 | None:intergenic |
CTGACACCTTACCAGCTTGA+GGG | 0.534896 | 2_1:-11141547 | None:intergenic |
ACTGCAACACTTAATGCAAA+TGG | 0.537645 | 2_1:+11140770 | Msa0194770:CDS |
CTTCACTGAATTCTCTCCCA+TGG | 0.539169 | 2_1:+11139993 | Msa0194770:CDS |
ACATTCTTCCTCTGTTGCGG+TGG | 0.540050 | 2_1:+11141339 | Msa0194770:CDS |
GTTCAACTTGCGATAGTCCA+AGG | 0.542934 | 2_1:-11139845 | None:intergenic |
TGGAACCACTGCCACGTTAG+GGG | 0.547405 | 2_1:+11141369 | Msa0194770:CDS |
TAAACAAAAGGATTCAAGAC+AGG | 0.550828 | 2_1:+11143431 | Msa0194770:CDS |
GAGCTTCGAGTGGATGGTCG+GGG | 0.552607 | 2_1:+11139820 | Msa0194770:CDS |
CAGAAGGCCTGAATGCTCGT+TGG | 0.553951 | 2_1:+11140345 | Msa0194770:CDS |
TTTCAGCAATGAAAATCTTG+TGG | 0.555730 | 2_1:+11140559 | Msa0194770:CDS |
TCTGTTGCGGTGGATGTATG+TGG | 0.557391 | 2_1:+11141349 | Msa0194770:CDS |
TTATCGGTGGCCCCTCAAGC+TGG | 0.557741 | 2_1:+11141536 | Msa0194770:CDS |
TGAAAAGCACAACAATGAAA+GGG | 0.559466 | 2_1:+11141297 | Msa0194770:CDS |
ACTGCTGGGCAGAGTAATGA+AGG | 0.560209 | 2_1:+11143519 | Msa0194770:CDS |
GTTGAACATTAAATTTGGGA+GGG | 0.560586 | 2_1:+11139861 | Msa0194770:CDS |
CAATCAGATGGTGATAAAGA+AGG | 0.565707 | 2_1:+11141403 | Msa0194770:CDS |
TACAAAGATAGGCCTAATGA+AGG | 0.565777 | 2_1:+11139958 | Msa0194770:CDS |
ACCCTGCATTGTCTAGTATG+TGG | 0.565903 | 2_1:-11140167 | None:intergenic |
CTAGACCAGTTGAAGCTGAA+AGG | 0.569023 | 2_1:+11141433 | Msa0194770:CDS |
TGTGTGCAATTCAAAAGCCT+GGG | 0.572264 | 2_1:+11140798 | Msa0194770:CDS |
CTGTCAAGCCCAAGAACAAG+AGG | 0.572717 | 2_1:+11143559 | Msa0194770:CDS |
AGTTGAACATTAAATTTGGG+AGG | 0.574931 | 2_1:+11139860 | Msa0194770:CDS |
TTCAACTTGCGATAGTCCAA+GGG | 0.575404 | 2_1:-11139844 | None:intergenic |
CTCAAAGGAAGGATCAGCCA+TGG | 0.576940 | 2_1:-11140010 | None:intergenic |
CTTAGAAAATGCGATAGACT+GGG | 0.580888 | 2_1:+11143659 | Msa0194770:three_prime_UTR |
TAAGCCAGAAGAACCAGCGC+AGG | 0.581328 | 2_1:+11143458 | Msa0194770:CDS |
AAGGCCTGAATGCTCGTTGG+GGG | 0.582507 | 2_1:+11140348 | Msa0194770:CDS |
GTGCAGAGTAGCAAGAAGGA+TGG | 0.583283 | 2_1:+11141499 | Msa0194770:CDS |
GAATTGACACAATCTGAGTA+GGG | 0.583687 | 2_1:-11141836 | None:intergenic |
GGAAAACAAAATCAATCAGA+TGG | 0.587328 | 2_1:+11141391 | Msa0194770:CDS |
ACTGACACCTTACCAGCTTG+AGG | 0.591782 | 2_1:-11141548 | None:intergenic |
TGTCTCGCCCAATTGGATCT+CGG | 0.592757 | 2_1:-11139896 | None:intergenic |
TGATGTATAATCAAAGGGAG+TGG | 0.594545 | 2_1:-11140509 | None:intergenic |
GGAACCACTGCCACGTTAGG+GGG | 0.597428 | 2_1:+11141370 | Msa0194770:CDS |
GGACGGCCAGGCTCAAAGGA+AGG | 0.597532 | 2_1:-11140021 | None:intergenic |
CTGAGGAAGCTGACCTCAGG+AGG | 0.600233 | 2_1:-11140400 | None:intergenic |
TTGACACTGCTCTAACTGCT+GGG | 0.600516 | 2_1:+11143505 | Msa0194770:CDS |
TGACACCTTACCAGCTTGAG+GGG | 0.602551 | 2_1:-11141546 | None:intergenic |
TAATGAAGGTAAGACTCTGA+AGG | 0.603765 | 2_1:+11143533 | Msa0194770:CDS |
GAAGGCCTGAATGCTCGTTG+GGG | 0.609514 | 2_1:+11140347 | Msa0194770:CDS |
ATCCACATACTAGACAATGC+AGG | 0.610994 | 2_1:+11140165 | Msa0194770:CDS |
ACAAGTGCAGAGTAGCAAGA+AGG | 0.616848 | 2_1:+11141495 | Msa0194770:CDS |
CATCTCTGAAGACATTCAGA+AGG | 0.617687 | 2_1:+11140329 | Msa0194770:CDS |
ACAGCCTCTTCATGGTATGT+CGG | 0.618076 | 2_1:-11140731 | None:intergenic |
CTGCACTTGTCCTAATGATG+TGG | 0.618547 | 2_1:-11141482 | None:intergenic |
AAAAGGTTCCGATACAACAA+AGG | 0.628612 | 2_1:-11139201 | None:intergenic |
TCAAAGGAAGGATCAGCCAT+GGG | 0.631822 | 2_1:-11140009 | None:intergenic |
ATGAAGAGGCTGTAATGACT+GGG | 0.631891 | 2_1:+11140741 | Msa0194770:CDS |
AGGCCTGAATGCTCGTTGGG+GGG | 0.639267 | 2_1:+11140349 | Msa0194770:CDS |
TCCACATACTAGACAATGCA+GGG | 0.639330 | 2_1:+11140166 | Msa0194770:CDS |
AGTTGTAGTGCATCCTCCTG+AGG | 0.641826 | 2_1:+11140387 | Msa0194770:CDS |
AAAGCTTCTCTAGCTTCTCG+TGG | 0.641908 | 2_1:+11141869 | Msa0194770:CDS |
TATAATGCGTCCTAACTCAA+CGG | 0.642138 | 2_1:-11140055 | None:intergenic |
GGATCCGACATACCATGAAG+AGG | 0.653779 | 2_1:+11140727 | Msa0194770:CDS |
CTCTACTTTCCCGTAAACCG+CGG | 0.664238 | 2_1:-11140080 | None:intergenic |
TCTTCTATCAGAGCTTCGAG+TGG | 0.667601 | 2_1:+11139810 | Msa0194770:CDS |
TCTAAGATAAGATACATGGT+CGG | 0.675153 | 2_1:-11143642 | None:intergenic |
TATGTGGATGTCAATGCGAA+TGG | 0.686074 | 2_1:-11140151 | None:intergenic |
GTGCAATTCAAAAGCCTGGG+GGG | 0.686221 | 2_1:+11140801 | Msa0194770:CDS |
CAACGGCAGATTCTCCAGGA+CGG | 0.698913 | 2_1:-11140038 | None:intergenic |
ACATACATCCACCGCAACAG+AGG | 0.701182 | 2_1:-11141347 | None:intergenic |
GTGTGCAATTCAAAAGCCTG+GGG | 0.708877 | 2_1:+11140799 | Msa0194770:CDS |
TCAACTTGCGATAGTCCAAG+GGG | 0.732414 | 2_1:-11139843 | None:intergenic |
TTAGGACGCATTATAGACCG+CGG | 0.761510 | 2_1:+11140063 | Msa0194770:CDS |
TGTGCAATTCAAAAGCCTGG+GGG | 0.776295 | 2_1:+11140800 | Msa0194770:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTGAAAATTTTCTTATAAAT+AGG | - | chr2_1:11142462-11142481 | None:intergenic | 10.0% |
!! | TAAAAAATAATAATTTACAG+GGG | - | chr2_1:11142753-11142772 | None:intergenic | 10.0% |
!!! | TTCATATATTTTATAATCAT+TGG | + | chr2_1:11143291-11143310 | Msa0194770:intron | 10.0% |
!!! | CAACAATTTACTTTTTTTTT+TGG | - | chr2_1:11139134-11139153 | None:intergenic | 15.0% |
!!! | CCTCTTTAATTTTATTTTTT+CGG | + | chr2_1:11139492-11139511 | Msa0194770:intron | 15.0% |
!! | AAATTTCTGATAAAATGATA+TGG | + | chr2_1:11139594-11139613 | Msa0194770:intron | 15.0% |
!! | TTTAGATAAAATTGTTCAAT+TGG | + | chr2_1:11142042-11142061 | Msa0194770:intron | 15.0% |
!! | GTAATTTAACAAAACAATAA+GGG | + | chr2_1:11142395-11142414 | Msa0194770:intron | 15.0% |
!! | AAAACAAAAAAAATTTACAG+GGG | - | chr2_1:11142781-11142800 | None:intergenic | 15.0% |
!! | CAAAACAAAAAAAATTTACA+GGG | - | chr2_1:11142782-11142801 | None:intergenic | 15.0% |
!!! | CAAAACAATTTTTTTTTACA+GGG | + | chr2_1:11142887-11142906 | Msa0194770:intron | 15.0% |
!!! | AAAACAATTTTTTTTTACAG+GGG | + | chr2_1:11142888-11142907 | Msa0194770:intron | 15.0% |
!! | TAAAAAAAAAAAGTTTACAG+AGG | + | chr2_1:11142914-11142933 | Msa0194770:intron | 15.0% |
!! | AAAAAAAAAAAGTTTACAGA+GGG | + | chr2_1:11142915-11142934 | Msa0194770:intron | 15.0% |
!!! | TTTAGTCAAAAAATAGATTT+TGG | - | chr2_1:11143746-11143765 | None:intergenic | 15.0% |
!!! | AAAATCTATTTTTTGACTAA+AGG | + | chr2_1:11143745-11143764 | Msa0194770:three_prime_UTR | 15.0% |
!!! | TATTGATAACAGTTTAGATT+TGG | + | chr2_1:11139377-11139396 | Msa0194770:intron | 20.0% |
!! | CCGAAAAAATAAAATTAAAG+AGG | - | chr2_1:11139495-11139514 | None:intergenic | 20.0% |
!!! | AAACTAAAACTTTTGAACTA+TGG | - | chr2_1:11139562-11139581 | None:intergenic | 20.0% |
!!! | AAAAGTTTTAGTTTCTGATA+GGG | + | chr2_1:11139568-11139587 | Msa0194770:intron | 20.0% |
!! | ATATATACCAAAATCAAGAA+AGG | - | chr2_1:11140662-11140681 | None:intergenic | 20.0% |
!!! | AAGCATGAAAATTTTCATAA+CGG | - | chr2_1:11141183-11141202 | None:intergenic | 20.0% |
!!! | AATCAAAAGTTATTAGTTCT+TGG | - | chr2_1:11141577-11141596 | None:intergenic | 20.0% |
!!! | ATTACTTTTATCTGTCATTT+TGG | + | chr2_1:11141749-11141768 | Msa0194770:intron | 20.0% |
!!! | TTTTGATTAAGCATTTAAAC+TGG | + | chr2_1:11141939-11141958 | Msa0194770:intron | 20.0% |
!!! | GATTTCAATTTTTGGAATTT+TGG | - | chr2_1:11141996-11142015 | None:intergenic | 20.0% |
!!! | ATTTTATCTAAACAAATGAG+AGG | - | chr2_1:11142034-11142053 | None:intergenic | 20.0% |
!! | TCTTAAAATGACAACTAAAA+GGG | - | chr2_1:11142164-11142183 | None:intergenic | 20.0% |
!! | AATTCTTTCTGTAATAACTA+AGG | + | chr2_1:11142274-11142293 | Msa0194770:intron | 20.0% |
!! | ATTCTTTCTGTAATAACTAA+GGG | + | chr2_1:11142275-11142294 | Msa0194770:intron | 20.0% |
!!! | ATAACTAAGGGTAATTTTTT+TGG | + | chr2_1:11142287-11142306 | Msa0194770:intron | 20.0% |
!! | GGTAATTTAACAAAACAATA+AGG | + | chr2_1:11142394-11142413 | Msa0194770:intron | 20.0% |
!!! | AATTTTCTTATAAATAGGAC+CGG | - | chr2_1:11142457-11142476 | None:intergenic | 20.0% |
!!! | TCTTTTCTTATATAAAAGAC+CGG | + | chr2_1:11142696-11142715 | Msa0194770:intron | 20.0% |
!! | AAACAAAAAAAATTTACAGG+GGG | - | chr2_1:11142780-11142799 | None:intergenic | 20.0% |
!! | CCAAAACAAAAAAAATTTAC+AGG | - | chr2_1:11142783-11142802 | None:intergenic | 20.0% |
!!! | CCTGTAAATTTTTTTTGTTT+TGG | + | chr2_1:11142780-11142799 | Msa0194770:intron | 20.0% |
!! | TTTCTGCAAAAAAAAAAAGT+TGG | + | chr2_1:11142836-11142855 | Msa0194770:intron | 20.0% |
!!! | CCTGTAAAAAAAAATTGTTT+TGG | - | chr2_1:11142889-11142908 | None:intergenic | 20.0% |
!!! | CCAAAACAATTTTTTTTTAC+AGG | + | chr2_1:11142886-11142905 | Msa0194770:intron | 20.0% |
!! | AAAAAAAAAAGTTTACAGAG+GGG | + | chr2_1:11142916-11142935 | Msa0194770:intron | 20.0% |
!! | TGCAACATTAATTATTGTTT+GGG | - | chr2_1:11142985-11143004 | None:intergenic | 20.0% |
!! | ATGCAACATTAATTATTGTT+TGG | - | chr2_1:11142986-11143005 | None:intergenic | 20.0% |
!! | AAAAAAACATCTTCCAATAA+TGG | + | chr2_1:11143585-11143604 | Msa0194770:CDS | 20.0% |
!! | AAAAAACATCTTCCAATAAT+GGG | + | chr2_1:11143586-11143605 | Msa0194770:CDS | 20.0% |
!!! | ATTTTCTAAGATAAGATACA+TGG | - | chr2_1:11143649-11143668 | None:intergenic | 20.0% |
!! | GTATATTTGTTTGTTCATTT+AGG | + | chr2_1:11143716-11143735 | Msa0194770:three_prime_UTR | 20.0% |
!!! | GTTTTAATTGGGGTAAATTA+GGG | - | chr2_1:11139174-11139193 | None:intergenic | 25.0% |
!!! | AAGGTTTTAGGGTTTTAATT+GGG | - | chr2_1:11139185-11139204 | None:intergenic | 25.0% |
!!! | AAAGGTTTTAGGGTTTTAAT+TGG | - | chr2_1:11139186-11139205 | None:intergenic | 25.0% |
!!! | TTACAGCTATATTGTTTTTC+CGG | + | chr2_1:11139306-11139325 | Msa0194770:intron | 25.0% |
!!! | ATTCCATTCAGTTTTGAATT+TGG | + | chr2_1:11139331-11139350 | Msa0194770:intron | 25.0% |
!!! | TTCCATTCAGTTTTGAATTT+GGG | + | chr2_1:11139332-11139351 | Msa0194770:intron | 25.0% |
! | TTAAAGAGGAATTAACATCT+GGG | - | chr2_1:11139481-11139500 | None:intergenic | 25.0% |
! | ATTAAAGAGGAATTAACATC+TGG | - | chr2_1:11139482-11139501 | None:intergenic | 25.0% |
!!! | CAAAAGTTTTAGTTTCTGAT+AGG | + | chr2_1:11139567-11139586 | Msa0194770:intron | 25.0% |
!! | GCAAGTTGAACATTAAATTT+GGG | + | chr2_1:11139857-11139876 | Msa0194770:CDS | 25.0% |
! | GATAAACAAATCAGTAAGTT+GGG | - | chr2_1:11140231-11140250 | None:intergenic | 25.0% |
! | AGATAAACAAATCAGTAAGT+TGG | - | chr2_1:11140232-11140251 | None:intergenic | 25.0% |
!! | GATTTGTTTATCTACAACTA+AGG | + | chr2_1:11140239-11140258 | Msa0194770:intron | 25.0% |
! | GATAATATGATATGTATTGC+AGG | + | chr2_1:11140478-11140497 | Msa0194770:intron | 25.0% |
! | GAAGATGATGTATAATCAAA+GGG | - | chr2_1:11140517-11140536 | None:intergenic | 25.0% |
!!! | TTGATTTTGGTATATATACG+AGG | + | chr2_1:11140665-11140684 | Msa0194770:intron | 25.0% |
!! | TTTTTATGCGTAAAGATTTG+AGG | + | chr2_1:11140922-11140941 | Msa0194770:intron | 25.0% |
! | GATTATGGAATGTATATTGT+TGG | + | chr2_1:11141241-11141260 | Msa0194770:intron | 25.0% |
!!! | AATTTCTTTTGTTGTCTGAA+TGG | + | chr2_1:11141266-11141285 | Msa0194770:intron | 25.0% |
! | CTATAAATAACAGTCTTTGA+GGG | - | chr2_1:11141643-11141662 | None:intergenic | 25.0% |
! | ACTATAAATAACAGTCTTTG+AGG | - | chr2_1:11141644-11141663 | None:intergenic | 25.0% |
!! | AGACTGTTATTTATAGTCAA+TGG | + | chr2_1:11141647-11141666 | Msa0194770:intron | 25.0% |
!!! | TAGTCAATGGATTGATAATA+TGG | + | chr2_1:11141660-11141679 | Msa0194770:intron | 25.0% |
! | TGATAATATGGAAACCTATA+TGG | + | chr2_1:11141672-11141691 | Msa0194770:intron | 25.0% |
! | TATGTTGAGGTAAAAATACT+TGG | + | chr2_1:11141794-11141813 | Msa0194770:intron | 25.0% |
!! | ACTGCAATGATTTCAATTTT+TGG | - | chr2_1:11142004-11142023 | None:intergenic | 25.0% |
! | GTCTTAAAATGACAACTAAA+AGG | - | chr2_1:11142165-11142184 | None:intergenic | 25.0% |
!!! | TAAATGAGTAAAGGTACTAT+AGG | - | chr2_1:11142239-11142258 | None:intergenic | 25.0% |
! | ATGGGATAATAAATGAGTAA+AGG | - | chr2_1:11142248-11142267 | None:intergenic | 25.0% |
! | GTTATTACAGAAAGAATTGA+TGG | - | chr2_1:11142272-11142291 | None:intergenic | 25.0% |
! | AACAAAACAATAAGGGTTAA+TGG | + | chr2_1:11142402-11142421 | Msa0194770:intron | 25.0% |
! | TGTGACTCTTTCTTATAAAT+AGG | - | chr2_1:11142498-11142517 | None:intergenic | 25.0% |
! | AAAAGACCAACATTAAATGA+GGG | - | chr2_1:11142560-11142579 | None:intergenic | 25.0% |
!!! | AATGTTGGTCTTTTCAATAT+TGG | + | chr2_1:11142566-11142585 | Msa0194770:intron | 25.0% |
!!! | ATACTTCACAAATTTTGATG+AGG | + | chr2_1:11142604-11142623 | Msa0194770:intron | 25.0% |
!!! | TACTTCACAAATTTTGATGA+GGG | + | chr2_1:11142605-11142624 | Msa0194770:intron | 25.0% |
!! | ATTTTTGAATGACCTATTAG+GGG | - | chr2_1:11142811-11142830 | None:intergenic | 25.0% |
!! | CATTTTTGAATGACCTATTA+GGG | - | chr2_1:11142812-11142831 | None:intergenic | 25.0% |
!!! | TCATTTTTGAATGACCTATT+AGG | - | chr2_1:11142813-11142832 | None:intergenic | 25.0% |
! | ATCAACTTCTAGTAAACAAA+AGG | + | chr2_1:11143419-11143438 | Msa0194770:CDS | 25.0% |
! | CATAACTTAATTCCCATTAT+TGG | - | chr2_1:11143601-11143620 | None:intergenic | 25.0% |
!!! | TCTATTTTTTGACTAAAGGA+AGG | + | chr2_1:11143749-11143768 | Msa0194770:three_prime_UTR | 25.0% |
!!! | CTATTTTTTGACTAAAGGAA+GGG | + | chr2_1:11143750-11143769 | Msa0194770:three_prime_UTR | 25.0% |
!!! | GGTTTTAATTGGGGTAAATT+AGG | - | chr2_1:11139175-11139194 | None:intergenic | 30.0% |
!!! | AGGTTTTAGGGTTTTAATTG+GGG | - | chr2_1:11139184-11139203 | None:intergenic | 30.0% |
! | CTCTTCTTTATTTAACTCGT+CGG | + | chr2_1:11139267-11139286 | Msa0194770:intron | 30.0% |
ATCCCAAATTCAAAACTGAA+TGG | - | chr2_1:11139337-11139356 | None:intergenic | 30.0% | |
AATACACGCATTTGTACAAA+AGG | - | chr2_1:11139361-11139380 | None:intergenic | 30.0% | |
TGATAACAGTTTAGATTTGG+AGG | + | chr2_1:11139380-11139399 | Msa0194770:intron | 30.0% | |
GATAACAGTTTAGATTTGGA+GGG | + | chr2_1:11139381-11139400 | Msa0194770:intron | 30.0% | |
! | CGCAAGTTGAACATTAAATT+TGG | + | chr2_1:11139856-11139875 | Msa0194770:CDS | 30.0% |
AGTTGAACATTAAATTTGGG+AGG | + | chr2_1:11139860-11139879 | Msa0194770:CDS | 30.0% | |
GTTGAACATTAAATTTGGGA+GGG | + | chr2_1:11139861-11139880 | Msa0194770:CDS | 30.0% | |
ATAGATAGTGTACCTTCATT+AGG | - | chr2_1:11139973-11139992 | None:intergenic | 30.0% | |
GGAAGATGATGTATAATCAA+AGG | - | chr2_1:11140518-11140537 | None:intergenic | 30.0% | |
TTCATTGCTGAAAAATCCAA+AGG | - | chr2_1:11140552-11140571 | None:intergenic | 30.0% | |
TTTCAGCAATGAAAATCTTG+TGG | + | chr2_1:11140559-11140578 | Msa0194770:CDS | 30.0% | |
! | ATACAAGCCTTTCTTGATTT+TGG | + | chr2_1:11140652-11140671 | Msa0194770:intron | 30.0% |
TTGGTATATATACGAGGTAA+TGG | + | chr2_1:11140671-11140690 | Msa0194770:intron | 30.0% | |
! | GATTTTATATGATGCTCTCT+AGG | + | chr2_1:11140700-11140719 | Msa0194770:intron | 30.0% |
CTTAACACCAAACACAAAAT+GGG | - | chr2_1:11141002-11141021 | None:intergenic | 30.0% | |
ATTGCATTATCAATTGCGTA+TGG | + | chr2_1:11141219-11141238 | Msa0194770:intron | 30.0% | |
! | TATCAATTGCGTATGGATTA+TGG | + | chr2_1:11141226-11141245 | Msa0194770:intron | 30.0% |
! | TTGAAAAGCACAACAATGAA+AGG | + | chr2_1:11141296-11141315 | Msa0194770:CDS | 30.0% |
! | TGAAAAGCACAACAATGAAA+GGG | + | chr2_1:11141297-11141316 | Msa0194770:CDS | 30.0% |
GGAAAACAAAATCAATCAGA+TGG | + | chr2_1:11141391-11141410 | Msa0194770:CDS | 30.0% | |
! | GGAAGCTCAAAGAATTTTAT+CGG | + | chr2_1:11141520-11141539 | Msa0194770:CDS | 30.0% |
TTGACATGTTTATGCCATAT+AGG | - | chr2_1:11141689-11141708 | None:intergenic | 30.0% | |
AACATAGACAAAACTCAGAA+TGG | - | chr2_1:11141780-11141799 | None:intergenic | 30.0% | |
CAAGATTATAGAGAAAGTGA+AGG | - | chr2_1:11141906-11141925 | None:intergenic | 30.0% | |
CTTCACTTTCTCTATAATCT+TGG | + | chr2_1:11141904-11141923 | Msa0194770:intron | 30.0% | |
TTGAAATCATTGCAGTACTA+AGG | + | chr2_1:11142008-11142027 | Msa0194770:intron | 30.0% | |
GAATGTCTTCTAAACAGAAT+GGG | - | chr2_1:11142089-11142108 | None:intergenic | 30.0% | |
TGAATGTCTTCTAAACAGAA+TGG | - | chr2_1:11142090-11142109 | None:intergenic | 30.0% | |
AAATGACAACTAAAAGGGAA+CGG | - | chr2_1:11142159-11142178 | None:intergenic | 30.0% | |
ACAGAAAGAATTGATGGAAT+GGG | - | chr2_1:11142266-11142285 | None:intergenic | 30.0% | |
TACAGAAAGAATTGATGGAA+TGG | - | chr2_1:11142267-11142286 | None:intergenic | 30.0% | |
!!! | ACTAAGGGTAATTTTTTTGG+TGG | + | chr2_1:11142290-11142309 | Msa0194770:intron | 30.0% |
GACAATGCATAATATATGCA+AGG | - | chr2_1:11142338-11142357 | None:intergenic | 30.0% | |
TTCTAACCCTCATTTAATGT+TGG | + | chr2_1:11142551-11142570 | Msa0194770:intron | 30.0% | |
GAAAAGACCAACATTAAATG+AGG | - | chr2_1:11142561-11142580 | None:intergenic | 30.0% | |
!! | TTGGTCTTTTCAATATTGGT+GGG | + | chr2_1:11142570-11142589 | Msa0194770:intron | 30.0% |
!!! | GTCTTGGTTTTGATGATTTT+TGG | + | chr2_1:11142671-11142690 | Msa0194770:intron | 30.0% |
TTTCTTATATAAAAGACCGG+AGG | + | chr2_1:11142699-11142718 | Msa0194770:intron | 30.0% | |
TTCTTATATAAAAGACCGGA+GGG | + | chr2_1:11142700-11142719 | Msa0194770:intron | 30.0% | |
TAATAATTTACAGGGGAAAC+CGG | - | chr2_1:11142746-11142765 | None:intergenic | 30.0% | |
! | TTTTTGAATGACCTATTAGG+GGG | - | chr2_1:11142859-11142878 | None:intergenic | 30.0% |
! | TGGTTTTTGAATGACCTATT+AGG | + | chr2_1:11142856-11142875 | Msa0194770:intron | 30.0% |
! | GGTTTTTGAATGACCTATTA+GGG | + | chr2_1:11142857-11142876 | Msa0194770:intron | 30.0% |
! | GTTTTTGAATGACCTATTAG+GGG | + | chr2_1:11142858-11142877 | Msa0194770:intron | 30.0% |
! | TTTTTGAATGACCTATTAGG+GGG | + | chr2_1:11142859-11142878 | Msa0194770:intron | 30.0% |
TCTGTAATATAGGTCATTTC+CGG | - | chr2_1:11142945-11142964 | None:intergenic | 30.0% | |
GAAATGACCTATATTACAGA+GGG | + | chr2_1:11142945-11142964 | Msa0194770:intron | 30.0% | |
TTCAAATGCGATAACGAAAA+AGG | + | chr2_1:11143057-11143076 | Msa0194770:intron | 30.0% | |
GATAACGAAAAAGGAACAAA+GGG | + | chr2_1:11143066-11143085 | Msa0194770:intron | 30.0% | |
TTTATGGCTGTGAAAAGTAA+TGG | - | chr2_1:11143121-11143140 | None:intergenic | 30.0% | |
!! | ATGAATCAGGTTGAGATTTA+TGG | - | chr2_1:11143137-11143156 | None:intergenic | 30.0% |
ACCTGATTCATTATTCTACA+AGG | + | chr2_1:11143146-11143165 | Msa0194770:intron | 30.0% | |
TCCTTGTAGAATAATGAATC+AGG | - | chr2_1:11143150-11143169 | None:intergenic | 30.0% | |
TGTACTATTGTAAAATGAGC+AGG | + | chr2_1:11143393-11143412 | Msa0194770:intron | 30.0% | |
TAAACAAAAGGATTCAAGAC+AGG | + | chr2_1:11143431-11143450 | Msa0194770:CDS | 30.0% | |
! | TTTTTCTTCCTCTTGTTCTT+GGG | - | chr2_1:11143570-11143589 | None:intergenic | 30.0% |
!!! | TTTTTTCTTCCTCTTGTTCT+TGG | - | chr2_1:11143571-11143590 | None:intergenic | 30.0% |
! | TCTAAGATAAGATACATGGT+CGG | - | chr2_1:11143645-11143664 | None:intergenic | 30.0% |
! | CCGATACAACAAAGGTTTTA+GGG | - | chr2_1:11139196-11139215 | None:intergenic | 35.0% |
! | CCCTAAAACCTTTGTTGTAT+CGG | + | chr2_1:11139193-11139212 | Msa0194770:five_prime_UTR | 35.0% |
! | TCCGATACAACAAAGGTTTT+AGG | - | chr2_1:11139197-11139216 | None:intergenic | 35.0% |
AAAAGGTTCCGATACAACAA+AGG | - | chr2_1:11139204-11139223 | None:intergenic | 35.0% | |
TCAAAACTGAATGGAATCAC+CGG | - | chr2_1:11139328-11139347 | None:intergenic | 35.0% | |
! | AGCAGAGATTAGCTAATTGT+TGG | + | chr2_1:11139749-11139768 | Msa0194770:CDS | 35.0% |
! | AGAGATTAGCTAATTGTTGG+CGG | + | chr2_1:11139752-11139771 | Msa0194770:CDS | 35.0% |
ATTAAATTTGGGAGGGATGA+TGG | + | chr2_1:11139868-11139887 | Msa0194770:CDS | 35.0% | |
TTAAATTTGGGAGGGATGAT+GGG | + | chr2_1:11139869-11139888 | Msa0194770:CDS | 35.0% | |
TCATTAGGCCTATCTTTGTA+AGG | - | chr2_1:11139958-11139977 | None:intergenic | 35.0% | |
TACAAAGATAGGCCTAATGA+AGG | + | chr2_1:11139958-11139977 | Msa0194770:CDS | 35.0% | |
TATAATGCGTCCTAACTCAA+CGG | - | chr2_1:11140058-11140077 | None:intergenic | 35.0% | |
GGAAGCTAAATAGAAAACAG+GGG | - | chr2_1:11140446-11140465 | None:intergenic | 35.0% | |
CGGAAGCTAAATAGAAAACA+GGG | - | chr2_1:11140447-11140466 | None:intergenic | 35.0% | |
CATATTATCGATAACTGCTG+CGG | - | chr2_1:11140467-11140486 | None:intergenic | 35.0% | |
TGATGTATAATCAAAGGGAG+TGG | - | chr2_1:11140512-11140531 | None:intergenic | 35.0% | |
ATATGATGCTCTCTAGGTAT+TGG | + | chr2_1:11140706-11140725 | Msa0194770:intron | 35.0% | |
ACTGCAACACTTAATGCAAA+TGG | + | chr2_1:11140770-11140789 | Msa0194770:CDS | 35.0% | |
! | AAACTTGCTCATGTTAAAGC+TGG | + | chr2_1:11140860-11140879 | Msa0194770:CDS | 35.0% |
ACTCACTGCATCATTTATCT+TGG | - | chr2_1:11140897-11140916 | None:intergenic | 35.0% | |
! | ATCATCTCCCATTTTGTGTT+TGG | + | chr2_1:11140992-11141011 | Msa0194770:intron | 35.0% |
GCTTAACACCAAACACAAAA+TGG | - | chr2_1:11141003-11141022 | None:intergenic | 35.0% | |
TCTTCTGCTTATAAGTCTTC+TGG | + | chr2_1:11141058-11141077 | Msa0194770:intron | 35.0% | |
! | TTTGTTGTCTGAATGGATGT+AGG | + | chr2_1:11141273-11141292 | Msa0194770:intron | 35.0% |
CAATCAGATGGTGATAAAGA+AGG | + | chr2_1:11141403-11141422 | Msa0194770:CDS | 35.0% | |
GAAAGGCGAGACAAATTTAA+TGG | + | chr2_1:11141450-11141469 | Msa0194770:CDS | 35.0% | |
! | AGCTCAAAGAATTTTATCGG+TGG | + | chr2_1:11141523-11141542 | Msa0194770:CDS | 35.0% |
! | TTTGATAGTCTAGCTGTTTC+TGG | + | chr2_1:11141616-11141635 | Msa0194770:intron | 35.0% |
!! | TCTGAGTTTTGTCTATGTTG+AGG | + | chr2_1:11141781-11141800 | Msa0194770:intron | 35.0% |
GAATTGACACAATCTGAGTA+GGG | - | chr2_1:11141839-11141858 | None:intergenic | 35.0% | |
TGAATTGACACAATCTGAGT+AGG | - | chr2_1:11141840-11141859 | None:intergenic | 35.0% | |
!!! | GAGGGAGTATTGTTTTACAT+GGG | - | chr2_1:11142137-11142156 | None:intergenic | 35.0% |
!!! | GTAATTTTTTTGGTGGTGTC+CGG | + | chr2_1:11142297-11142316 | Msa0194770:intron | 35.0% |
!!! | TAATTTTTTTGGTGGTGTCC+GGG | + | chr2_1:11142298-11142317 | Msa0194770:intron | 35.0% |
TGCATAATATATGCAAGGTC+CGG | - | chr2_1:11142333-11142352 | None:intergenic | 35.0% | |
TTCTTATAAATAGGACCGGA+GGG | - | chr2_1:11142453-11142472 | None:intergenic | 35.0% | |
TTTCTTATAAATAGGACCGG+AGG | - | chr2_1:11142454-11142473 | None:intergenic | 35.0% | |
!!! | GTTGGTCTTTTCAATATTGG+TGG | + | chr2_1:11142569-11142588 | Msa0194770:intron | 35.0% |
GCAACAACTAATGATTGTCT+TGG | + | chr2_1:11142655-11142674 | Msa0194770:intron | 35.0% | |
GGAAATGACCTATATTACAG+AGG | + | chr2_1:11142944-11142963 | Msa0194770:intron | 35.0% | |
TGCTTTACCCTCTGTAATAT+AGG | - | chr2_1:11142955-11142974 | None:intergenic | 35.0% | |
CGATAACGAAAAAGGAACAA+AGG | + | chr2_1:11143065-11143084 | Msa0194770:intron | 35.0% | |
! | TGTGAGGTTTTCGTTTAGAT+AGG | + | chr2_1:11143173-11143192 | Msa0194770:intron | 35.0% |
! | GTTGATTTCATTTCTGCGTT+TGG | + | chr2_1:11143212-11143231 | Msa0194770:intron | 35.0% |
ATTTCATTTCTGCGTTTGGT+TGG | + | chr2_1:11143216-11143235 | Msa0194770:intron | 35.0% | |
TAATGAAGGTAAGACTCTGA+AGG | + | chr2_1:11143533-11143552 | Msa0194770:CDS | 35.0% | |
TCTTAGAAAATGCGATAGAC+TGG | + | chr2_1:11143658-11143677 | Msa0194770:three_prime_UTR | 35.0% | |
CTTAGAAAATGCGATAGACT+GGG | + | chr2_1:11143659-11143678 | Msa0194770:three_prime_UTR | 35.0% | |
! | AATGACATTTTGCGCTTTCT+GGG | - | chr2_1:11143795-11143814 | None:intergenic | 35.0% |
! | AAATGACATTTTGCGCTTTC+TGG | - | chr2_1:11143796-11143815 | None:intergenic | 35.0% |
! | TTGTATCGGAACCTTTTCGT+CGG | + | chr2_1:11139207-11139226 | Msa0194770:five_prime_UTR | 40.0% |
! | ATCTGGGTAGCACTGAATTA+GGG | - | chr2_1:11139465-11139484 | None:intergenic | 40.0% |
TTAAGTAGAGAGAGAGAGAG+AGG | + | chr2_1:11139721-11139740 | Msa0194770:intron | 40.0% | |
TTCAACTTGCGATAGTCCAA+GGG | - | chr2_1:11139847-11139866 | None:intergenic | 40.0% | |
TTGTGCAGCCTTACAAAGAT+AGG | + | chr2_1:11139947-11139966 | Msa0194770:CDS | 40.0% | |
TTCTTTCTGCCAAACTTGTC+TGG | + | chr2_1:11140127-11140146 | Msa0194770:CDS | 40.0% | |
TCTTTCTGCCAAACTTGTCT+GGG | + | chr2_1:11140128-11140147 | Msa0194770:CDS | 40.0% | |
TATGTGGATGTCAATGCGAA+TGG | - | chr2_1:11140154-11140173 | None:intergenic | 40.0% | |
ATCCACATACTAGACAATGC+AGG | + | chr2_1:11140165-11140184 | Msa0194770:CDS | 40.0% | |
TCCACATACTAGACAATGCA+GGG | + | chr2_1:11140166-11140185 | Msa0194770:CDS | 40.0% | |
! | CAGTAAGTTGGGTAAGAAAG+AGG | - | chr2_1:11140220-11140239 | None:intergenic | 40.0% |
TGCTGCAAATATTGCTGCAT+TGG | + | chr2_1:11140306-11140325 | Msa0194770:CDS | 40.0% | |
! | CATCTCTGAAGACATTCAGA+AGG | + | chr2_1:11140329-11140348 | Msa0194770:CDS | 40.0% |
AAATAGAAAACAGGGGCGAA+AGG | - | chr2_1:11140439-11140458 | None:intergenic | 40.0% | |
GCGGAAGCTAAATAGAAAAC+AGG | - | chr2_1:11140448-11140467 | None:intergenic | 40.0% | |
ATGAAGAGGCTGTAATGACT+GGG | + | chr2_1:11140741-11140760 | Msa0194770:CDS | 40.0% | |
TGTGTGCAATTCAAAAGCCT+GGG | + | chr2_1:11140798-11140817 | Msa0194770:CDS | 40.0% | |
!! | CATAGGCATTGAAAGAGTGA+GGG | - | chr2_1:11140948-11140967 | None:intergenic | 40.0% |
!! | TCATAGGCATTGAAAGAGTG+AGG | - | chr2_1:11140949-11140968 | None:intergenic | 40.0% |
AGATGCATCGTTCTGTTCAT+AGG | - | chr2_1:11140965-11140984 | None:intergenic | 40.0% | |
TGCAATGAAAGGCAAACAGA+AGG | - | chr2_1:11141119-11141138 | None:intergenic | 40.0% | |
!!! | ATTTTGTTTTCCCCCTAACG+TGG | - | chr2_1:11141383-11141402 | None:intergenic | 40.0% |
GAATGTGATGCCACATCATT+AGG | + | chr2_1:11141472-11141491 | Msa0194770:CDS | 40.0% | |
! | TACTTGGTCTTTCACTTCTC+AGG | + | chr2_1:11141810-11141829 | Msa0194770:intron | 40.0% |
! | ACTTGGTCTTTCACTTCTCA+GGG | + | chr2_1:11141811-11141830 | Msa0194770:intron | 40.0% |
CACTCTATTTAGCTGCACTT+AGG | + | chr2_1:11141963-11141982 | Msa0194770:intron | 40.0% | |
TGTCTTCTAAACAGAATGGG+TGG | - | chr2_1:11142086-11142105 | None:intergenic | 40.0% | |
!!! | GGAGGGAGTATTGTTTTACA+TGG | - | chr2_1:11142138-11142157 | None:intergenic | 40.0% |
!!! | AATTTTTTTGGTGGTGTCCG+GGG | + | chr2_1:11142299-11142318 | Msa0194770:intron | 40.0% |
CATAATATATGCAAGGTCCG+GGG | - | chr2_1:11142331-11142350 | None:intergenic | 40.0% | |
GCATAATATATGCAAGGTCC+GGG | - | chr2_1:11142332-11142351 | None:intergenic | 40.0% | |
! | AGAGCTTAACTCAGTTGGTA+AGG | - | chr2_1:11142360-11142379 | None:intergenic | 40.0% |
TACCAACTGAGTTAAGCTCT+TGG | + | chr2_1:11142360-11142379 | Msa0194770:intron | 40.0% | |
TAAGCTCTTGGAGACAACTA+AGG | + | chr2_1:11142372-11142391 | Msa0194770:intron | 40.0% | |
AAGCTCTTGGAGACAACTAA+GGG | + | chr2_1:11142373-11142392 | Msa0194770:intron | 40.0% | |
! | ACCGGAGGGAGTATATTATA+GGG | - | chr2_1:11142439-11142458 | None:intergenic | 40.0% |
!! | GTAGGTCATTGACTCATTTC+CGG | + | chr2_1:11142724-11142743 | Msa0194770:intron | 40.0% |
!!! | GTTTTGGAATACCCCCTAAT+AGG | + | chr2_1:11142796-11142815 | Msa0194770:intron | 40.0% |
!!! | GTTTTGGAATACCCCCTAAT+AGG | - | chr2_1:11142796-11142815 | None:intergenic | 40.0% |
AAAGTTTACAGAGGGGAAAC+CGG | + | chr2_1:11142923-11142942 | Msa0194770:intron | 40.0% | |
GAACAAAGGGAGTAATGTAG+AGG | + | chr2_1:11143079-11143098 | Msa0194770:intron | 40.0% | |
! | TATTCTACAAGGAGTGTGTG+AGG | + | chr2_1:11143157-11143176 | Msa0194770:intron | 40.0% |
! | TGTTTCTGCTTCCGACGAAA+AGG | - | chr2_1:11139221-11139240 | None:intergenic | 45.0% |
! | CATCTGGGTAGCACTGAATT+AGG | - | chr2_1:11139466-11139485 | None:intergenic | 45.0% |
TCTTCTATCAGAGCTTCGAG+TGG | + | chr2_1:11139810-11139829 | Msa0194770:CDS | 45.0% | |
TCAACTTGCGATAGTCCAAG+GGG | - | chr2_1:11139846-11139865 | None:intergenic | 45.0% | |
GTTCAACTTGCGATAGTCCA+AGG | - | chr2_1:11139848-11139867 | None:intergenic | 45.0% | |
CTTCACTGAATTCTCTCCCA+TGG | + | chr2_1:11139993-11140012 | Msa0194770:CDS | 45.0% | |
TCAAAGGAAGGATCAGCCAT+GGG | - | chr2_1:11140012-11140031 | None:intergenic | 45.0% | |
TTAGGACGCATTATAGACCG+CGG | + | chr2_1:11140063-11140082 | Msa0194770:CDS | 45.0% | |
GCATTATAGACCGCGGTTTA+CGG | + | chr2_1:11140070-11140089 | Msa0194770:CDS | 45.0% | |
CATTATAGACCGCGGTTTAC+GGG | + | chr2_1:11140071-11140090 | Msa0194770:CDS | 45.0% | |
ACCCTGCATTGTCTAGTATG+TGG | - | chr2_1:11140170-11140189 | None:intergenic | 45.0% | |
AAGGTCACGCTGTTAAACTG+AGG | - | chr2_1:11140420-11140439 | None:intergenic | 45.0% | |
AATCCAAAGGTGACTGCAAC+TGG | - | chr2_1:11140539-11140558 | None:intergenic | 45.0% | |
ACAGCCTCTTCATGGTATGT+CGG | - | chr2_1:11140734-11140753 | None:intergenic | 45.0% | |
CAGTCATTACAGCCTCTTCA+TGG | - | chr2_1:11140742-11140761 | None:intergenic | 45.0% | |
CATGAAGAGGCTGTAATGAC+TGG | + | chr2_1:11140740-11140759 | Msa0194770:CDS | 45.0% | |
GTGTGTGCAATTCAAAAGCC+TGG | + | chr2_1:11140797-11140816 | Msa0194770:CDS | 45.0% | |
GTGTGCAATTCAAAAGCCTG+GGG | + | chr2_1:11140799-11140818 | Msa0194770:CDS | 45.0% | |
TGTGCAATTCAAAAGCCTGG+GGG | + | chr2_1:11140800-11140819 | Msa0194770:CDS | 45.0% | |
GCACACTTCACTGCAATGAA+AGG | - | chr2_1:11141130-11141149 | None:intergenic | 45.0% | |
ACGACATTCTTCCTCTGTTG+CGG | + | chr2_1:11141336-11141355 | Msa0194770:CDS | 45.0% | |
CTAGACCAGTTGAAGCTGAA+AGG | + | chr2_1:11141433-11141452 | Msa0194770:CDS | 45.0% | |
CTGCACTTGTCCTAATGATG+TGG | - | chr2_1:11141485-11141504 | None:intergenic | 45.0% | |
ACAAGTGCAGAGTAGCAAGA+AGG | + | chr2_1:11141495-11141514 | Msa0194770:CDS | 45.0% | |
! | AAAGCTTCTCTAGCTTCTCG+TGG | + | chr2_1:11141869-11141888 | Msa0194770:CDS | 45.0% |
GACAACTAAAAGGGAACGGA+GGG | - | chr2_1:11142155-11142174 | None:intergenic | 45.0% | |
TGACAACTAAAAGGGAACGG+AGG | - | chr2_1:11142156-11142175 | None:intergenic | 45.0% | |
CTCCAAGAGCTTAACTCAGT+TGG | - | chr2_1:11142365-11142384 | None:intergenic | 45.0% | |
! | GAGGGAGTATATTATAGGGG+GGG | - | chr2_1:11142435-11142454 | None:intergenic | 45.0% |
! | GGAGGGAGTATATTATAGGG+GGG | - | chr2_1:11142436-11142455 | None:intergenic | 45.0% |
! | CGGAGGGAGTATATTATAGG+GGG | - | chr2_1:11142437-11142456 | None:intergenic | 45.0% |
! | CCGGAGGGAGTATATTATAG+GGG | - | chr2_1:11142438-11142457 | None:intergenic | 45.0% |
CCCCTATAATATACTCCCTC+CGG | + | chr2_1:11142435-11142454 | Msa0194770:intron | 45.0% | |
! | GACCGGAGGGAGTATATTAT+AGG | - | chr2_1:11142440-11142459 | None:intergenic | 45.0% |
TATAAAAGACCGGAGGGAGT+AGG | + | chr2_1:11142706-11142725 | Msa0194770:intron | 45.0% | |
GCAGTTAGAGCAGTGTCAAT+TGG | - | chr2_1:11143504-11143523 | None:intergenic | 45.0% | |
ATTGACACTGCTCTAACTGC+TGG | + | chr2_1:11143504-11143523 | Msa0194770:CDS | 45.0% | |
TTGACACTGCTCTAACTGCT+GGG | + | chr2_1:11143505-11143524 | Msa0194770:CDS | 45.0% | |
!!! | AAAATTTTCAAAAAAAATTT+TGG | + | chr2_1:11142471-11142490 | Msa0194770:intron | 5.0% |
!! | ATAAAAAATAATAATTTACA+GGG | - | chr2_1:11142754-11142773 | None:intergenic | 5.0% |
!! | AATAAAAAATAATAATTTAC+AGG | - | chr2_1:11142755-11142774 | None:intergenic | 5.0% |
TAGAGAGAGAGAGAGAGGCA+TGG | + | chr2_1:11139726-11139745 | Msa0194770:intron | 50.0% | |
CTATCAGAGCTTCGAGTGGA+TGG | + | chr2_1:11139814-11139833 | Msa0194770:CDS | 50.0% | |
TGTCTCGCCCAATTGGATCT+CGG | - | chr2_1:11139899-11139918 | None:intergenic | 50.0% | |
CTCAAAGGAAGGATCAGCCA+TGG | - | chr2_1:11140013-11140032 | None:intergenic | 50.0% | |
AACTCAACGGCAGATTCTCC+AGG | - | chr2_1:11140045-11140064 | None:intergenic | 50.0% | |
GGAGAATCTGCCGTTGAGTT+AGG | + | chr2_1:11140045-11140064 | Msa0194770:CDS | 50.0% | |
CTCTACTTTCCCGTAAACCG+CGG | - | chr2_1:11140083-11140102 | None:intergenic | 50.0% | |
GCAGAGCGATTCAGTGTCAA+TGG | - | chr2_1:11140106-11140125 | None:intergenic | 50.0% | |
AGAAGGCCTGAATGCTCGTT+GGG | + | chr2_1:11140346-11140365 | Msa0194770:CDS | 50.0% | |
AGTTGTAGTGCATCCTCCTG+AGG | + | chr2_1:11140387-11140406 | Msa0194770:CDS | 50.0% | |
AAACTGAGGAAGCTGACCTC+AGG | - | chr2_1:11140406-11140425 | None:intergenic | 50.0% | |
CTTCCAGTTGCAGTCACCTT+TGG | + | chr2_1:11140533-11140552 | Msa0194770:CDS | 50.0% | |
GAGAGAGAGAGAGAGAGAGA+GGG | - | chr2_1:11140618-11140637 | None:intergenic | 50.0% | |
AGAGAGAGAGAGAGAGAGAG+AGG | - | chr2_1:11140617-11140636 | None:intergenic | 50.0% | |
GGATCCGACATACCATGAAG+AGG | + | chr2_1:11140727-11140746 | Msa0194770:CDS | 50.0% | |
GTGCAATTCAAAAGCCTGGG+GGG | + | chr2_1:11140801-11140820 | Msa0194770:CDS | 50.0% | |
ACATTCTTCCTCTGTTGCGG+TGG | + | chr2_1:11141339-11141358 | Msa0194770:CDS | 50.0% | |
ACATACATCCACCGCAACAG+AGG | - | chr2_1:11141350-11141369 | None:intergenic | 50.0% | |
TCTGTTGCGGTGGATGTATG+TGG | + | chr2_1:11141349-11141368 | Msa0194770:CDS | 50.0% | |
TCTCGCCTTTCAGCTTCAAC+TGG | - | chr2_1:11141441-11141460 | None:intergenic | 50.0% | |
GTGCAGAGTAGCAAGAAGGA+TGG | + | chr2_1:11141499-11141518 | Msa0194770:CDS | 50.0% | |
TGACACCTTACCAGCTTGAG+GGG | - | chr2_1:11141549-11141568 | None:intergenic | 50.0% | |
CTGACACCTTACCAGCTTGA+GGG | - | chr2_1:11141550-11141569 | None:intergenic | 50.0% | |
ACTGACACCTTACCAGCTTG+AGG | - | chr2_1:11141551-11141570 | None:intergenic | 50.0% | |
AGTCAATGACCTACTCCCTC+CGG | - | chr2_1:11142718-11142737 | None:intergenic | 50.0% | |
!! | ATTTCCTGCGCTGGTTCTTC+TGG | - | chr2_1:11143465-11143484 | None:intergenic | 50.0% |
ACTGTCTTGATTTCCTGCGC+TGG | - | chr2_1:11143474-11143493 | None:intergenic | 50.0% | |
ACTGCTGGGCAGAGTAATGA+AGG | + | chr2_1:11143519-11143538 | Msa0194770:CDS | 50.0% | |
CTGTCAAGCCCAAGAACAAG+AGG | + | chr2_1:11143559-11143578 | Msa0194770:CDS | 50.0% | |
CAGAGCTTCGAGTGGATGGT+CGG | + | chr2_1:11139818-11139837 | Msa0194770:CDS | 55.0% | |
AGAGCTTCGAGTGGATGGTC+GGG | + | chr2_1:11139819-11139838 | Msa0194770:CDS | 55.0% | |
TGGGTCTGCCGAGATCCAAT+TGG | + | chr2_1:11139888-11139907 | Msa0194770:CDS | 55.0% | |
GGGTCTGCCGAGATCCAATT+GGG | + | chr2_1:11139889-11139908 | Msa0194770:CDS | 55.0% | |
TGACACGTGTCTCGCCCAAT+TGG | - | chr2_1:11139906-11139925 | None:intergenic | 55.0% | |
GCTGATCCTTCCTTTGAGCC+TGG | + | chr2_1:11140015-11140034 | Msa0194770:CDS | 55.0% | |
CAACGGCAGATTCTCCAGGA+CGG | - | chr2_1:11140041-11140060 | None:intergenic | 55.0% | |
GCGAATGGCCCAGACAAGTT+TGG | - | chr2_1:11140139-11140158 | None:intergenic | 55.0% | |
CAGAAGGCCTGAATGCTCGT+TGG | + | chr2_1:11140345-11140364 | Msa0194770:CDS | 55.0% | |
GAAGGCCTGAATGCTCGTTG+GGG | + | chr2_1:11140347-11140366 | Msa0194770:CDS | 55.0% | |
AAGGCCTGAATGCTCGTTGG+GGG | + | chr2_1:11140348-11140367 | Msa0194770:CDS | 55.0% | |
GAGAGAGAGAGAGAGAGGGA+GGG | - | chr2_1:11140614-11140633 | None:intergenic | 55.0% | |
AGAGAGAGAGAGAGAGAGGG+AGG | - | chr2_1:11140615-11140634 | None:intergenic | 55.0% | |
AATTCAAAAGCCTGGGGGGC+AGG | + | chr2_1:11140805-11140824 | Msa0194770:CDS | 55.0% | |
ATTCAAAAGCCTGGGGGGCA+GGG | + | chr2_1:11140806-11140825 | Msa0194770:CDS | 55.0% | |
TGTGGAACCACTGCCACGTT+AGG | + | chr2_1:11141367-11141386 | Msa0194770:CDS | 55.0% | |
GTGGAACCACTGCCACGTTA+GGG | + | chr2_1:11141368-11141387 | Msa0194770:CDS | 55.0% | |
TGGAACCACTGCCACGTTAG+GGG | + | chr2_1:11141369-11141388 | Msa0194770:CDS | 55.0% | |
! | TTTTCCCCCTAACGTGGCAG+TGG | - | chr2_1:11141377-11141396 | None:intergenic | 55.0% |
TAAGCCAGAAGAACCAGCGC+AGG | + | chr2_1:11143458-11143477 | Msa0194770:CDS | 55.0% | |
GAGCTTCGAGTGGATGGTCG+GGG | + | chr2_1:11139820-11139839 | Msa0194770:CDS | 60.0% | |
AGGCCTGAATGCTCGTTGGG+GGG | + | chr2_1:11140349-11140368 | Msa0194770:CDS | 60.0% | |
TCTCCCCCCAACGAGCATTC+AGG | - | chr2_1:11140355-11140374 | None:intergenic | 60.0% | |
TGAATGCTCGTTGGGGGGAG+AGG | + | chr2_1:11140354-11140373 | Msa0194770:CDS | 60.0% | |
CTGAGGAAGCTGACCTCAGG+AGG | - | chr2_1:11140403-11140422 | None:intergenic | 60.0% | |
GAGAGAGAGAGGGAGGGAGA+GGG | - | chr2_1:11140608-11140627 | None:intergenic | 60.0% | |
AGAGAGAGAGAGGGAGGGAG+AGG | - | chr2_1:11140609-11140628 | None:intergenic | 60.0% | |
GGAACCACTGCCACGTTAGG+GGG | + | chr2_1:11141370-11141389 | Msa0194770:CDS | 60.0% | |
TTATCGGTGGCCCCTCAAGC+TGG | + | chr2_1:11141536-11141555 | Msa0194770:CDS | 60.0% | |
GGACGGCCAGGCTCAAAGGA+AGG | - | chr2_1:11140024-11140043 | None:intergenic | 65.0% | |
TCCTTTGAGCCTGGCCGTCC+TGG | + | chr2_1:11140024-11140043 | Msa0194770:CDS | 65.0% | |
TCCAGGACGGCCAGGCTCAA+AGG | - | chr2_1:11140028-11140047 | None:intergenic | 65.0% | |
GCAGATTCTCCAGGACGGCC+AGG | - | chr2_1:11140036-11140055 | None:intergenic | 65.0% | |
TGCTCGTTGGGGGGAGAGGA+TGG | + | chr2_1:11140358-11140377 | Msa0194770:CDS | 65.0% | |
AGAGAGGGAGGGAGAGGGAG+GGG | - | chr2_1:11140603-11140622 | None:intergenic | 65.0% | |
GAGAGAGGGAGGGAGAGGGA+GGG | - | chr2_1:11140604-11140623 | None:intergenic | 65.0% | |
AGAGAGAGGGAGGGAGAGGG+AGG | - | chr2_1:11140605-11140624 | None:intergenic | 65.0% | |
TGAAAGACACCCTGCCCCCC+AGG | - | chr2_1:11140818-11140837 | None:intergenic | 65.0% | |
GGTGGCCCCTCAAGCTGGTA+AGG | + | chr2_1:11141541-11141560 | Msa0194770:intron | 65.0% | |
AAGGTCCGGGGTTCGAACCC+CGG | - | chr2_1:11142319-11142338 | None:intergenic | 65.0% | |
AGTGGATGGTCGGGGCCCCT+TGG | + | chr2_1:11139828-11139847 | Msa0194770:CDS | 70.0% | |
GAGAGGGAGGGAGAGGGAGG+GGG | - | chr2_1:11140602-11140621 | None:intergenic | 70.0% | |
GGTGTCCGGGGTTCGAACCC+CGG | + | chr2_1:11142311-11142330 | Msa0194770:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 11139128 | 11143846 | 11139128 | ID=Msa0194770;Name=Msa0194770 |
chr2_1 | mRNA | 11139128 | 11143846 | 11139128 | ID=Msa0194770-mRNA-1;Parent=Msa0194770;Name=Msa0194770-mRNA-1;_AED=0.10;_eAED=0.10;_QI=133|1|1|1|0.85|0.75|8|232|449 |
chr2_1 | exon | 11139128 | 11139244 | 11139128 | ID=Msa0194770-mRNA-1:exon:4949;Parent=Msa0194770-mRNA-1 |
chr2_1 | exon | 11139729 | 11140187 | 11139729 | ID=Msa0194770-mRNA-1:exon:4950;Parent=Msa0194770-mRNA-1 |
chr2_1 | exon | 11140294 | 11140408 | 11140294 | ID=Msa0194770-mRNA-1:exon:4951;Parent=Msa0194770-mRNA-1 |
chr2_1 | exon | 11140500 | 11140580 | 11140500 | ID=Msa0194770-mRNA-1:exon:4952;Parent=Msa0194770-mRNA-1 |
chr2_1 | exon | 11140722 | 11140910 | 11140722 | ID=Msa0194770-mRNA-1:exon:4953;Parent=Msa0194770-mRNA-1 |
chr2_1 | exon | 11141295 | 11141557 | 11141295 | ID=Msa0194770-mRNA-1:exon:4954;Parent=Msa0194770-mRNA-1 |
chr2_1 | exon | 11141832 | 11141890 | 11141832 | ID=Msa0194770-mRNA-1:exon:4955;Parent=Msa0194770-mRNA-1 |
chr2_1 | exon | 11143415 | 11143846 | 11143415 | ID=Msa0194770-mRNA-1:exon:4956;Parent=Msa0194770-mRNA-1 |
chr2_1 | five_prime_UTR | 11139128 | 11139244 | 11139128 | ID=Msa0194770-mRNA-1:five_prime_utr;Parent=Msa0194770-mRNA-1 |
chr2_1 | five_prime_UTR | 11139729 | 11139744 | 11139729 | ID=Msa0194770-mRNA-1:five_prime_utr;Parent=Msa0194770-mRNA-1 |
chr2_1 | CDS | 11139745 | 11140187 | 11139745 | ID=Msa0194770-mRNA-1:cds;Parent=Msa0194770-mRNA-1 |
chr2_1 | CDS | 11140294 | 11140408 | 11140294 | ID=Msa0194770-mRNA-1:cds;Parent=Msa0194770-mRNA-1 |
chr2_1 | CDS | 11140500 | 11140580 | 11140500 | ID=Msa0194770-mRNA-1:cds;Parent=Msa0194770-mRNA-1 |
chr2_1 | CDS | 11140722 | 11140910 | 11140722 | ID=Msa0194770-mRNA-1:cds;Parent=Msa0194770-mRNA-1 |
chr2_1 | CDS | 11141295 | 11141557 | 11141295 | ID=Msa0194770-mRNA-1:cds;Parent=Msa0194770-mRNA-1 |
chr2_1 | CDS | 11141832 | 11141890 | 11141832 | ID=Msa0194770-mRNA-1:cds;Parent=Msa0194770-mRNA-1 |
chr2_1 | CDS | 11143415 | 11143614 | 11143415 | ID=Msa0194770-mRNA-1:cds;Parent=Msa0194770-mRNA-1 |
chr2_1 | three_prime_UTR | 11143615 | 11143846 | 11143615 | ID=Msa0194770-mRNA-1:three_prime_utr;Parent=Msa0194770-mRNA-1 |
Gene Sequence |
Protein sequence |