Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485510 | XP_039689177.1 | 98.853 | 523 | 6 | 0 | 1 | 523 | 1 | 523 | 0.0 | 1055 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485510 | sp|O00567|NOP56_HUMAN | 58.389 | 447 | 174 | 2 | 3 | 449 | 4 | 438 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485510 | B7FLU4 | 98.664 | 524 | 6 | 1 | 1 | 523 | 1 | 524 | 0.0 | 1050 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000100 | Msa0485510 | 0.803001 | 4.293584e-49 | -8.615850e-47 |
| Msa0015440 | Msa0485510 | 0.822402 | 2.414408e-53 | -8.615850e-47 |
| Msa0019390 | Msa0485510 | 0.825772 | 3.906885e-54 | -8.615850e-47 |
| Msa0030200 | Msa0485510 | 0.870045 | 1.963207e-66 | -8.615850e-47 |
| Msa0044890 | Msa0485510 | 0.816164 | 6.366746e-52 | -8.615850e-47 |
| Msa0070700 | Msa0485510 | 0.815090 | 1.104401e-51 | -8.615850e-47 |
| Msa0115130 | Msa0485510 | 0.848209 | 7.091818e-60 | -8.615850e-47 |
| Msa0118590 | Msa0485510 | 0.839444 | 1.578751e-57 | -8.615850e-47 |
| Msa0129660 | Msa0485510 | 0.838505 | 2.764286e-57 | -8.615850e-47 |
| Msa0139350 | Msa0485510 | 0.806864 | 6.688495e-50 | -8.615850e-47 |
| Msa0141660 | Msa0485510 | 0.805708 | 1.171632e-49 | -8.615850e-47 |
| Msa0144370 | Msa0485510 | 0.815339 | 9.725329e-52 | -8.615850e-47 |
| Msa0164770 | Msa0485510 | 0.896364 | 3.959536e-76 | -8.615850e-47 |
| Msa0170200 | Msa0485510 | 0.876060 | 1.884493e-68 | -8.615850e-47 |
| Msa0184200 | Msa0485510 | 0.853740 | 1.957024e-61 | -8.615850e-47 |
| Msa0188440 | Msa0485510 | 0.815219 | 1.034254e-51 | -8.615850e-47 |
| Msa0194770 | Msa0485510 | 0.842083 | 3.210872e-58 | -8.615850e-47 |
| Msa0195340 | Msa0485510 | 0.856858 | 2.420378e-62 | -8.615850e-47 |
| Msa0231030 | Msa0485510 | 0.826333 | 2.872833e-54 | -8.615850e-47 |
| Msa0236650 | Msa0485510 | 0.861827 | 7.800063e-64 | -8.615850e-47 |
| Msa0403500 | Msa0485510 | 0.828938 | 6.804225e-55 | -8.615850e-47 |
| Msa0408050 | Msa0485510 | 0.805018 | 1.634889e-49 | -8.615850e-47 |
| Msa0450710 | Msa0485510 | 0.803074 | 4.146985e-49 | -8.615850e-47 |
| Msa0482200 | Msa0485510 | 0.936167 | 2.675827e-97 | -8.615850e-47 |
| Msa0270550 | Msa0485510 | 0.834715 | 2.553063e-56 | -8.615850e-47 |
| Msa0297610 | Msa0485510 | 0.800982 | 1.116249e-48 | -8.615850e-47 |
| Msa0297630 | Msa0485510 | 0.891816 | 2.811130e-74 | -8.615850e-47 |
| Msa0314420 | Msa0485510 | 0.812361 | 4.406780e-51 | -8.615850e-47 |
| Msa0335730 | Msa0485510 | 0.826538 | 2.567325e-54 | -8.615850e-47 |
| Msa0343620 | Msa0485510 | 0.806855 | 6.715201e-50 | -8.615850e-47 |
| Msa0485510 | Msa0486070 | 0.834322 | 3.205027e-56 | -8.615850e-47 |
| Msa0485510 | Msa0554290 | 0.804777 | 1.835241e-49 | -8.615850e-47 |
| Msa0485510 | Msa0573140 | 0.847719 | 9.679922e-60 | -8.615850e-47 |
| Msa0485510 | Msa0573270 | 0.823916 | 1.070682e-53 | -8.615850e-47 |
| Msa0485510 | Msa0648780 | 0.871507 | 6.486297e-67 | -8.615850e-47 |
| Msa0485510 | Msa0658590 | 0.824921 | 6.212049e-54 | -8.615850e-47 |
| Msa0485510 | Msa0659050 | 0.871252 | 7.873323e-67 | -8.615850e-47 |
| Msa0485510 | Msa0660850 | 0.833305 | 5.757504e-56 | -8.615850e-47 |
| Msa0485510 | Msa0664750 | 0.804801 | 1.814839e-49 | -8.615850e-47 |
| Msa0485510 | Msa0687440 | 0.839287 | 1.734211e-57 | -8.615850e-47 |
| Msa0485510 | Msa0703550 | 0.821686 | 3.537846e-53 | -8.615850e-47 |
| Msa0485510 | Msa0704980 | 0.877193 | 7.649606e-69 | -8.615850e-47 |
| Msa0485510 | Msa0709730 | 0.811537 | 6.664237e-51 | -8.615850e-47 |
| Msa0485510 | Msa0745740 | 0.863018 | 3.358949e-64 | -8.615850e-47 |
| Msa0485510 | Msa0755700 | 0.871524 | 6.402552e-67 | -8.615850e-47 |
| Msa0485510 | Msa0757940 | 0.829014 | 6.524780e-55 | -8.615850e-47 |
| Msa0485510 | Msa0799260 | 0.834977 | 2.193338e-56 | -8.615850e-47 |
| Msa0485510 | Msa0799310 | 0.841578 | 4.364976e-58 | -8.615850e-47 |
| Msa0485510 | Msa0826990 | 0.868795 | 5.007400e-66 | -8.615850e-47 |
| Msa0485510 | Msa0879540 | 0.825328 | 4.977422e-54 | -8.615850e-47 |
| Msa0485510 | Msa0882580 | 0.831996 | 1.216184e-55 | -8.615850e-47 |
| Msa0485510 | Msa0930490 | 0.810443 | 1.149840e-50 | -8.615850e-47 |
| Msa0485510 | Msa0966210 | 0.817617 | 3.005452e-52 | -8.615850e-47 |
| Msa0485510 | Msa1012740 | 0.829674 | 4.511592e-55 | -8.615850e-47 |
| Msa0485510 | Msa1012770 | 0.855521 | 5.965311e-62 | -8.615850e-47 |
| Msa0485510 | Msa1025460 | 0.840622 | 7.782586e-58 | -8.615850e-47 |
| Msa0485510 | Msa1027640 | 0.864991 | 8.158585e-65 | -8.615850e-47 |
| Msa0485510 | Msa1043140 | 0.804283 | 2.327168e-49 | -8.615850e-47 |
| Msa0485510 | Msa1044480 | 0.847222 | 1.325934e-59 | -8.615850e-47 |
| Msa0485510 | Msa1066190 | 0.875179 | 3.777483e-68 | -8.615850e-47 |
| Msa0485510 | Msa1123770 | 0.809316 | 2.010011e-50 | -8.615850e-47 |
| Msa0485510 | Msa1132480 | 0.831588 | 1.533198e-55 | -8.615850e-47 |
| Msa0485510 | Msa1153060 | 0.858505 | 7.866002e-63 | -8.615850e-47 |
| Msa0485510 | Msa1169910 | 0.810496 | 1.119992e-50 | -8.615850e-47 |
| Msa0485510 | Msa1191830 | 0.805943 | 1.045777e-49 | -8.615850e-47 |
| Msa0485510 | Msa1209850 | 0.886996 | 2.102864e-72 | -8.615850e-47 |
| Msa0485510 | Msa1225720 | 0.989672 | 3.859663e-179 | -8.615850e-47 |
| Msa0485510 | Msa1226470 | 0.820981 | 5.145894e-53 | -8.615850e-47 |
| Msa0485510 | Msa1258390 | 0.982478 | 3.388131e-155 | -8.615850e-47 |
| Msa0485510 | Msa1264310 | 0.835752 | 1.397695e-56 | -8.615850e-47 |
| Msa0485510 | Msa1303070 | 0.821671 | 3.566919e-53 | -8.615850e-47 |
| Msa0485510 | Msa1314260 | 0.811011 | 8.665471e-51 | -8.615850e-47 |
| Msa0485510 | Msa1330560 | 0.865915 | 4.176884e-65 | -8.615850e-47 |
| Msa0485510 | Msa1356400 | 0.803125 | 4.046091e-49 | -8.615850e-47 |
| Msa0485510 | Msa1370450 | 0.877821 | 4.618596e-69 | -8.615850e-47 |
| Msa0485510 | Msa1382140 | 0.836550 | 8.762009e-57 | -8.615850e-47 |
| Msa0485510 | Msa1383960 | 0.877559 | 5.700930e-69 | -8.615850e-47 |
| Msa0485510 | Msa1385720 | 0.811408 | 7.107952e-51 | -8.615850e-47 |
| Msa0485510 | Msa1418690 | 0.814867 | 1.237944e-51 | -8.615850e-47 |
| Msa0485510 | Msa1418760 | 0.805830 | 1.104754e-49 | -8.615850e-47 |
| Msa0485510 | Msa1444240 | 0.941695 | 2.657571e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485510 | MtrunA17_Chr4g0057761 | 98.664 | 524 | 6 | 1 | 1 | 523 | 1 | 524 | 0.0 | 1050 |
| Msa0485510 | MtrunA17_Chr4g0035431 | 43.243 | 407 | 216 | 4 | 3 | 408 | 1 | 393 | 4.49e-103 | 320 |
| Msa0485510 | MtrunA17_Chr5g0397481 | 42.892 | 408 | 216 | 5 | 3 | 408 | 1 | 393 | 1.40e-102 | 320 |
| Msa0485510 | MtrunA17_Chr7g0228641 | 27.273 | 220 | 152 | 2 | 192 | 409 | 117 | 330 | 3.20e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485510 | AT1G56110.1 | 78.899 | 436 | 92 | 0 | 1 | 436 | 1 | 436 | 0.0 | 749 |
| Msa0485510 | AT3G12860.1 | 79.909 | 438 | 88 | 0 | 1 | 438 | 1 | 438 | 0.0 | 743 |
| Msa0485510 | AT3G05060.1 | 43.578 | 436 | 232 | 7 | 3 | 437 | 2 | 424 | 4.92e-110 | 338 |
| Msa0485510 | AT5G27120.1 | 45.320 | 406 | 209 | 6 | 3 | 408 | 1 | 393 | 2.17e-109 | 336 |
| Msa0485510 | AT5G27140.2 | 40.385 | 364 | 205 | 4 | 96 | 456 | 57 | 411 | 2.83e-78 | 253 |
| Msa0485510 | AT5G27140.1 | 40.110 | 364 | 204 | 5 | 96 | 456 | 57 | 409 | 6.74e-76 | 246 |
| Msa0485510 | AT1G60170.1 | 25.850 | 147 | 109 | 0 | 273 | 419 | 194 | 340 | 4.58e-15 | 78.2 |
Find 117 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCATTCGGCCTTTGTTTC+TGG | 0.131146 | 3_4:+3202967 | None:intergenic |
| GTTCTTGATCTGATTCTTAT+TGG | 0.163993 | 3_4:-3201950 | Msa0485510:three_prime_UTR |
| CCTCACTCAGACACATTTCT+AGG | 0.170042 | 3_4:-3205397 | Msa0485510:five_prime_UTR |
| TCTTCAACTCTTCAGATTCT+TGG | 0.176244 | 3_4:-3203256 | Msa0485510:CDS |
| CCAACTAGCGACTGCAAATT+TGG | 0.193971 | 3_4:+3203343 | None:intergenic |
| CTTTCAAGAGCAGAGGTAAA+AGG | 0.230717 | 3_4:+3205198 | None:intergenic |
| TTCTTACCTTCCTTAACTTT+AGG | 0.280668 | 3_4:+3204436 | None:intergenic |
| TTTACAATCTTCACAAGTTC+AGG | 0.281626 | 3_4:+3203708 | None:intergenic |
| TAAATAAATTGAAGCCAAAC+AGG | 0.337768 | 3_4:+3205431 | None:intergenic |
| TGTAAACCGGGTTGACAATA+TGG | 0.341142 | 3_4:-3204096 | Msa0485510:CDS |
| CGATGAGCTGAGGACTGTTT+TGG | 0.344431 | 3_4:-3204470 | Msa0485510:CDS |
| AATTCAATAGCAAGGTGATT+TGG | 0.344786 | 3_4:-3204174 | Msa0485510:intron |
| GAAAAGGGTACTTCAGCATT+TGG | 0.369631 | 3_4:-3202810 | Msa0485510:CDS |
| TGATGGACCTATCTGATTAC+AGG | 0.375490 | 3_4:-3203411 | Msa0485510:CDS |
| TGGAATATAAGACCATATTT+AGG | 0.383737 | 3_4:+3203016 | None:intergenic |
| TATTATACCCATTGACGCTT+TGG | 0.385876 | 3_4:+3203557 | None:intergenic |
| AAAGAAAGAGAAGAGAAAGT+TGG | 0.395833 | 3_4:-3202281 | Msa0485510:CDS |
| GGATCAGGAGGATGAAGTTC+AGG | 0.398273 | 3_4:-3202260 | Msa0485510:CDS |
| GTGCAGAGAAGGCTTTGTTC+AGG | 0.401730 | 3_4:-3203234 | Msa0485510:intron |
| TCACTCTTTGTGCAAACATA+TGG | 0.406698 | 3_4:+3203431 | None:intergenic |
| TGTGTCTGAGTGAGGGAAAA+GGG | 0.407616 | 3_4:+3205405 | None:intergenic |
| CCTTCTCGATACACTTGATA+AGG | 0.408230 | 3_4:-3204057 | Msa0485510:CDS |
| AGGTTAAGTTCAATGTAAAC+CGG | 0.411525 | 3_4:-3204109 | Msa0485510:CDS |
| AGAAAGAGTGCCATTGTTGA+TGG | 0.413093 | 3_4:+3205360 | None:intergenic |
| CGCACACAAACTCGTTACTT+TGG | 0.414058 | 3_4:+3204341 | None:intergenic |
| AGAGAAGAGAAAGTTGGATC+AGG | 0.424350 | 3_4:-3202275 | Msa0485510:CDS |
| TGTGCAGAGAGTGGTATTCA+TGG | 0.424908 | 3_4:-3203737 | Msa0485510:intron |
| TGCAACATGACAAATATAAC+AGG | 0.428130 | 3_4:+3202136 | None:intergenic |
| GTTACCGATTTGAGCCGCTT+CGG | 0.428648 | 3_4:-3205249 | Msa0485510:CDS |
| AACTGTTGCAGATACAGAAA+TGG | 0.437507 | 3_4:-3202440 | Msa0485510:intron |
| ATCGCCAACCAAGTCAGTTA+AGG | 0.438260 | 3_4:+3203611 | None:intergenic |
| CAAAGTTGCAAAATTTATTG+AGG | 0.438799 | 3_4:-3203667 | Msa0485510:CDS |
| GCTCATGGAATCGACGAAAT+CGG | 0.440318 | 3_4:-3205300 | Msa0485510:CDS |
| GCTATTGAAAGTGTTGATAA+AGG | 0.448681 | 3_4:-3202699 | Msa0485510:intron |
| TTGATCTGATTCTTATTGGA+AGG | 0.448708 | 3_4:-3201946 | Msa0485510:three_prime_UTR |
| TTTCAAGAGCAGAGGTAAAA+GGG | 0.450795 | 3_4:+3205199 | None:intergenic |
| CTTCTCCACGAAACTGCTCT+TGG | 0.451567 | 3_4:-3205339 | Msa0485510:CDS |
| AGAGGCAACACTCCTAAATA+TGG | 0.455113 | 3_4:-3203028 | Msa0485510:CDS |
| ATGTGTCTGAGTGAGGGAAA+AGG | 0.455712 | 3_4:+3205404 | None:intergenic |
| CCAAATTTGCAGTCGCTAGT+TGG | 0.461168 | 3_4:-3203343 | Msa0485510:CDS |
| AGAAGCCGCCAAAGCGTCAA+TGG | 0.463280 | 3_4:-3203565 | Msa0485510:CDS |
| ATTCATTCGCCATGAGAGTC+AGG | 0.465984 | 3_4:-3204028 | Msa0485510:intron |
| GACTAACTTACCTAAAGTTA+AGG | 0.466664 | 3_4:-3204446 | Msa0485510:CDS |
| GCGAACTTATTCGTGGTGTC+AGG | 0.471160 | 3_4:-3204321 | Msa0485510:CDS |
| CTCACTCAGACACATTTCTA+GGG | 0.472261 | 3_4:-3205396 | Msa0485510:five_prime_UTR |
| TATTGAGGATAAGTCTAAGT+TGG | 0.472777 | 3_4:-3203652 | Msa0485510:CDS |
| TTTACCGAAGCGGCTCAAAT+CGG | 0.474756 | 3_4:+3205245 | None:intergenic |
| TTCTTATTGGAAGGTTGAAA+CGG | 0.477648 | 3_4:-3201937 | Msa0485510:three_prime_UTR |
| GGAGGATGAAGTTCAGGATA+AGG | 0.480853 | 3_4:-3202254 | Msa0485510:CDS |
| CTTCTTGCTTGAATCAGCGT+TGG | 0.485532 | 3_4:+3202216 | None:intergenic |
| ACAAACTCGTTACTTTGGAC+TGG | 0.486068 | 3_4:+3204346 | None:intergenic |
| TATGCCTTGTTCGAAGCTCA+TGG | 0.487581 | 3_4:-3205315 | Msa0485510:CDS |
| AAGAAGGCAAAGTTCAGCTT+AGG | 0.488720 | 3_4:-3204418 | Msa0485510:CDS |
| GAAGAGAAAGTTGGATCAGG+AGG | 0.491231 | 3_4:-3202272 | Msa0485510:CDS |
| TCAGATTCTTGGTGCAGAGA+AGG | 0.492010 | 3_4:-3203245 | Msa0485510:CDS |
| TATACCCATTGACGCTTTGG+CGG | 0.501050 | 3_4:+3203560 | None:intergenic |
| AATTGAAGCCTTAACTGACT+TGG | 0.503464 | 3_4:-3203619 | Msa0485510:CDS |
| TTAAGATTATATAATCATGC+TGG | 0.504921 | 3_4:+3201986 | None:intergenic |
| CAGGATAAGGTTGTAGATGA+TGG | 0.505235 | 3_4:-3202241 | Msa0485510:CDS |
| TAAAGTTAAGGAAGGTAAGA+AGG | 0.510060 | 3_4:-3204434 | Msa0485510:CDS |
| AAGAATCTGAAGAGTTGAAG+AGG | 0.512414 | 3_4:+3203258 | None:intergenic |
| CAAATCAACGCCGTTTCTGA+AGG | 0.515356 | 3_4:-3205168 | Msa0485510:intron |
| CAAGTTTGTTGGTGATCTCA+AGG | 0.516645 | 3_4:-3204287 | Msa0485510:intron |
| TATAATCATGCTGGGAAACA+TGG | 0.517166 | 3_4:+3201995 | None:intergenic |
| CATAACCAAGAGCAGTTTCG+TGG | 0.523654 | 3_4:+3205334 | None:intergenic |
| GAGTTTATTACCTTCAGAAA+CGG | 0.525796 | 3_4:+3205158 | None:intergenic |
| ATCATGCTGGGAAACATGGC+AGG | 0.526519 | 3_4:+3201999 | None:intergenic |
| TTGCAAGATAGCGAGCCATT+CGG | 0.530118 | 3_4:+3202954 | None:intergenic |
| GGATGCTGAATAAACTAGAA+TGG | 0.537664 | 3_4:-3202170 | Msa0485510:exon |
| AAGGCTGCAGAAATTACAAA+TGG | 0.539269 | 3_4:-3202340 | Msa0485510:CDS |
| CCTTAGCTCTGCTGTAACTG+TGG | 0.549456 | 3_4:+3204129 | None:intergenic |
| CCACAGTTACAGCAGAGCTA+AGG | 0.551161 | 3_4:-3204129 | Msa0485510:CDS |
| GAAGCCGCCAAAGCGTCAAT+GGG | 0.554490 | 3_4:-3203564 | Msa0485510:intron |
| GAAGCCTTAACTGACTTGGT+TGG | 0.554526 | 3_4:-3203615 | Msa0485510:CDS |
| TAAGATTATATAATCATGCT+GGG | 0.555499 | 3_4:+3201987 | None:intergenic |
| TTCGAGACTTTCAAGAGCAG+AGG | 0.555968 | 3_4:+3205191 | None:intergenic |
| ACCTTCTCCTGTAATCAGAT+AGG | 0.563907 | 3_4:+3203404 | None:intergenic |
| GTCGCTCTTCAACTTGCTCA+CGG | 0.564026 | 3_4:+3202778 | None:intergenic |
| GTGTCTGAGTGAGGGAAAAG+GGG | 0.568684 | 3_4:+3205406 | None:intergenic |
| AGATGACATGGCTGTAGATA+AGG | 0.568881 | 3_4:-3202359 | Msa0485510:CDS |
| TTTGTGTGCGAACTTATTCG+TGG | 0.571147 | 3_4:-3204328 | Msa0485510:CDS |
| ACCTATCTGATTACAGGAGA+AGG | 0.571797 | 3_4:-3203405 | Msa0485510:CDS |
| AGAATCTGAAGAGTTGAAGA+GGG | 0.574880 | 3_4:+3203259 | None:intergenic |
| CCTAGAAATGTGTCTGAGTG+AGG | 0.576303 | 3_4:+3205397 | None:intergenic |
| TGGACATTGATCAAGTCCAC+AGG | 0.578477 | 3_4:+3203451 | None:intergenic |
| GATTTGGAGAAGGCACAGCT+TGG | 0.583090 | 3_4:-3204158 | Msa0485510:CDS |
| CCTATAGTACCTGACTCTCA+TGG | 0.583501 | 3_4:+3204019 | None:intergenic |
| CAAAACAGTCCTCAGCTCAT+CGG | 0.583817 | 3_4:+3204471 | None:intergenic |
| GATTCCATGAGCTTCGAACA+AGG | 0.584519 | 3_4:+3205311 | None:intergenic |
| CTCGACCAATAAAAGAAGAG+TGG | 0.586538 | 3_4:+3202996 | None:intergenic |
| CTAGAAATGTGTCTGAGTGA+GGG | 0.593244 | 3_4:+3205398 | None:intergenic |
| TGCCAGAAACAAAGGCCGAA+TGG | 0.597003 | 3_4:-3202969 | Msa0485510:CDS |
| ATAGCAAGGTGATTTGGAGA+AGG | 0.597287 | 3_4:-3204168 | Msa0485510:intron |
| ATTTGTGAGACTACCAGCAT+GGG | 0.598797 | 3_4:+3203294 | None:intergenic |
| TCGCTAGTTGGTGATAGTGT+TGG | 0.600802 | 3_4:-3203331 | Msa0485510:CDS |
| GGTTAAGTTCAATGTAAACC+GGG | 0.602722 | 3_4:-3204108 | Msa0485510:CDS |
| AACTTACCTAAAGTTAAGGA+AGG | 0.604940 | 3_4:-3204442 | Msa0485510:CDS |
| TATGTTTGCACAAAGAGTGA+TGG | 0.605742 | 3_4:-3203428 | Msa0485510:CDS |
| CGAGCATCTGCCAGAAACAA+AGG | 0.606525 | 3_4:-3202977 | Msa0485510:CDS |
| GAATGACCATATTGTCAACC+CGG | 0.609844 | 3_4:+3204090 | None:intergenic |
| AGGACAAGATTTGTCCCCTG+TGG | 0.610718 | 3_4:-3203467 | Msa0485510:CDS |
| GGTGTAGCAGAGTCTAAGAT+CGG | 0.612323 | 3_4:-3204397 | Msa0485510:CDS |
| CCTTATCAAGTGTATCGAGA+AGG | 0.614254 | 3_4:+3204057 | None:intergenic |
| AATTACAAATGGTGATGCGG+AGG | 0.625035 | 3_4:-3202329 | Msa0485510:CDS |
| GCTTAACAACTTTACCGAAG+CGG | 0.627626 | 3_4:+3205235 | None:intergenic |
| TGACATCAATGTTCTTACGA+GGG | 0.630630 | 3_4:+3202730 | None:intergenic |
| AATTTGTGAGACTACCAGCA+TGG | 0.634495 | 3_4:+3203293 | None:intergenic |
| GCTCGTTTGATATCCCATGC+TGG | 0.639782 | 3_4:-3203307 | Msa0485510:CDS |
| GTATTATGACCGATGAGCTG+AGG | 0.640224 | 3_4:-3204480 | Msa0485510:CDS |
| AGCTGCAGATGGAGATGACA+TGG | 0.642008 | 3_4:-3202371 | Msa0485510:CDS |
| AGAAATTACAAATGGTGATG+CGG | 0.643384 | 3_4:-3202332 | Msa0485510:CDS |
| ATGACATCAATGTTCTTACG+AGG | 0.650333 | 3_4:+3202729 | None:intergenic |
| GACATCAATGTTCTTACGAG+GGG | 0.656258 | 3_4:+3202731 | None:intergenic |
| TGGCGATGAAGATAAAGCAA+AGG | 0.665007 | 3_4:-3203595 | Msa0485510:CDS |
| GGACATTGATCAAGTCCACA+GGG | 0.677216 | 3_4:+3203452 | None:intergenic |
| GAATCTGAAGAGTTGAAGAG+GGG | 0.696575 | 3_4:+3203260 | None:intergenic |
| GACATTGATCAAGTCCACAG+GGG | 0.785794 | 3_4:+3203453 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATGACTTTTTTCAA+TGG | - | chr3_4:3202507-3202526 | Msa0485510:intron | 15.0% |
| !!! | TTTTGAAGAAATATATATCT+TGG | - | chr3_4:3202561-3202580 | Msa0485510:intron | 15.0% |
| !! | TTTGAAGAAATATATATCTT+GGG | - | chr3_4:3202562-3202581 | Msa0485510:intron | 15.0% |
| !! | TTATAGGATTATTTATCTAT+TGG | - | chr3_4:3203531-3203550 | Msa0485510:intron | 15.0% |
| !! | TATGAATCTGTTATGTAATA+GGG | - | chr3_4:3202196-3202215 | Msa0485510:CDS | 20.0% |
| !!! | CAAGAAATAGATATTTGTTA+AGG | - | chr3_4:3202676-3202695 | Msa0485510:intron | 20.0% |
| !! | AAAAAAATACAGGTCAAAAT+GGG | + | chr3_4:3203090-3203109 | None:intergenic | 20.0% |
| !! | GAAAAGAAACAAAAAAATAC+AGG | + | chr3_4:3203100-3203119 | None:intergenic | 20.0% |
| !! | AAACCTAAAATTAAACATCA+AGG | + | chr3_4:3204106-3204125 | None:intergenic | 20.0% |
| !! | GATAGATAAAATTACTATAC+AGG | + | chr3_4:3204421-3204440 | None:intergenic | 20.0% |
| !! | TATAATTTATGTAGTGCATT+AGG | + | chr3_4:3204820-3204839 | None:intergenic | 20.0% |
| !! | GAAAAAGAAATCAAAAAAGA+AGG | - | chr3_4:3205111-3205130 | Msa0485510:intron | 20.0% |
| !! | TAAGATTATATAATCATGCT+GGG | + | chr3_4:3205318-3205337 | None:intergenic | 20.0% |
| !! | TTAAGATTATATAATCATGC+TGG | + | chr3_4:3205319-3205338 | None:intergenic | 20.0% |
| ! | GTATGAATCTGTTATGTAAT+AGG | - | chr3_4:3202195-3202214 | Msa0485510:CDS | 25.0% |
| ! | ATGAATCTGTTATGTAATAG+GGG | - | chr3_4:3202197-3202216 | Msa0485510:CDS | 25.0% |
| ! | ATAGGGGTTATTTATTTAAC+TGG | - | chr3_4:3202213-3202232 | Msa0485510:CDS | 25.0% |
| ! | GTTATTTATTTAACTGGTAC+TGG | - | chr3_4:3202219-3202238 | Msa0485510:CDS | 25.0% |
| !! | AATGTTGTTTATGAAGCTTT+AGG | - | chr3_4:3202322-3202341 | Msa0485510:CDS | 25.0% |
| ! | TTCAGCTAAAAAAGATTATG+TGG | - | chr3_4:3202447-3202466 | Msa0485510:intron | 25.0% |
| !!! | AAAATCGACTCTAAAATGAA+AGG | + | chr3_4:3202606-3202625 | None:intergenic | 25.0% |
| !!! | TTATCACCTTTGTCATTTTT+GGG | + | chr3_4:3202648-3202667 | None:intergenic | 25.0% |
| !!! | ATTATCACCTTTGTCATTTT+TGG | + | chr3_4:3202649-3202668 | None:intergenic | 25.0% |
| !!! | CTTAAGTTGTTTTTGTTTGT+TGG | - | chr3_4:3202786-3202805 | Msa0485510:CDS | 25.0% |
| ! | CAAAAAAATACAGGTCAAAA+TGG | + | chr3_4:3203091-3203110 | None:intergenic | 25.0% |
| ! | CTTACTATGTTAACATCATA+TGG | - | chr3_4:3203475-3203494 | Msa0485510:intron | 25.0% |
| ! | CAAAGTTGCAAAATTTATTG+AGG | - | chr3_4:3203635-3203654 | Msa0485510:CDS | 25.0% |
| !!! | TGTCCTTGATGTTTAATTTT+AGG | - | chr3_4:3204100-3204119 | Msa0485510:CDS | 25.0% |
| ! | TGGAATATAAGACCATATTT+AGG | + | chr3_4:3204289-3204308 | None:intergenic | 25.0% |
| !! | ATATTCCACTCTTCTTTTAT+TGG | - | chr3_4:3204301-3204320 | Msa0485510:CDS | 25.0% |
| !! | ATTTTCTCATAGCATGAATT+TGG | - | chr3_4:3204661-3204680 | Msa0485510:intron | 25.0% |
| !!! | TGACTTTTGTTTATTGCTTT+TGG | - | chr3_4:3205253-3205272 | Msa0485510:CDS | 25.0% |
| !!! | ATTTCTAGGGTTTTCGTTTT+CGG | - | chr3_4:3201919-3201938 | Msa0485510:three_prime_UTR | 30.0% |
| GAGTTTATTACCTTCAGAAA+CGG | + | chr3_4:3202147-3202166 | None:intergenic | 30.0% | |
| !! | TTAGTTTGTTTCAGTATGCA+TGG | - | chr3_4:3202379-3202398 | Msa0485510:CDS | 30.0% |
| !!! | TCATTTTTGGGTGTTTGTTT+AGG | + | chr3_4:3202636-3202655 | None:intergenic | 30.0% |
| ! | TTTCGATATGCTATGTTTTG+AGG | - | chr3_4:3202730-3202749 | Msa0485510:CDS | 30.0% |
| !! | TTCGATATGCTATGTTTTGA+GGG | - | chr3_4:3202731-3202750 | Msa0485510:CDS | 30.0% |
| !!! | AAGTTGTTTTTGTTTGTTGG+TGG | - | chr3_4:3202789-3202808 | Msa0485510:CDS | 30.0% |
| GACTAACTTACCTAAAGTTA+AGG | - | chr3_4:3202856-3202875 | Msa0485510:intron | 30.0% | |
| AACTTACCTAAAGTTAAGGA+AGG | - | chr3_4:3202860-3202879 | Msa0485510:intron | 30.0% | |
| TTCTTACCTTCCTTAACTTT+AGG | + | chr3_4:3202869-3202888 | None:intergenic | 30.0% | |
| TAAAGTTAAGGAAGGTAAGA+AGG | - | chr3_4:3202868-3202887 | Msa0485510:intron | 30.0% | |
| !! | CAACATTTTGACAAGTTTGT+TGG | - | chr3_4:3203004-3203023 | Msa0485510:CDS | 30.0% |
| TGCATTTGAATTCAATAGCA+AGG | - | chr3_4:3203120-3203139 | Msa0485510:intron | 30.0% | |
| AATTCAATAGCAAGGTGATT+TGG | - | chr3_4:3203128-3203147 | Msa0485510:intron | 30.0% | |
| AGGTTAAGTTCAATGTAAAC+CGG | - | chr3_4:3203193-3203212 | Msa0485510:intron | 30.0% | |
| TCAGAGAGCTATAAACTTAT+AGG | - | chr3_4:3203515-3203534 | Msa0485510:intron | 30.0% | |
| TTTACAATCTTCACAAGTTC+AGG | + | chr3_4:3203597-3203616 | None:intergenic | 30.0% | |
| TATTGAGGATAAGTCTAAGT+TGG | - | chr3_4:3203650-3203669 | Msa0485510:CDS | 30.0% | |
| !!! | TTTTTTTCATAGAAACGAGC+AGG | - | chr3_4:3204136-3204155 | Msa0485510:CDS | 30.0% |
| GACAAGTGACTGTTATTATT+GGG | - | chr3_4:3204191-3204210 | Msa0485510:intron | 30.0% | |
| !!! | TCTTTTTTCGTGCTTTATTC+AGG | - | chr3_4:3204239-3204258 | Msa0485510:intron | 30.0% |
| !!! | CTTTTTTCGTGCTTTATTCA+GGG | - | chr3_4:3204240-3204259 | Msa0485510:intron | 30.0% |
| !! | TCAAGAATAGATTGCTTTTC+CGG | - | chr3_4:3204388-3204407 | Msa0485510:CDS | 30.0% |
| TTACTATACAGGAAACAAAC+CGG | + | chr3_4:3204410-3204429 | None:intergenic | 30.0% | |
| ! | CGACTTGACTTTTATGATAA+GGG | - | chr3_4:3204543-3204562 | Msa0485510:intron | 30.0% |
| !! | GCTATTGAAAGTGTTGATAA+AGG | - | chr3_4:3204603-3204622 | Msa0485510:intron | 30.0% |
| !! | TTGAAAGTGTTGATAAAGGT+AGG | - | chr3_4:3204607-3204626 | Msa0485510:intron | 30.0% |
| !! | TGAAAGTGTTGATAAAGGTA+GGG | - | chr3_4:3204608-3204627 | Msa0485510:intron | 30.0% |
| CATATAGCATCACCAAAAAA+TGG | + | chr3_4:3204736-3204755 | None:intergenic | 30.0% | |
| !!! | CATTTTTTGGTGATGCTATA+TGG | - | chr3_4:3204734-3204753 | Msa0485510:intron | 30.0% |
| ! | AGAAATTACAAATGGTGATG+CGG | - | chr3_4:3204970-3204989 | Msa0485510:intron | 30.0% |
| AAAGAAAGAGAAGAGAAAGT+TGG | - | chr3_4:3205021-3205040 | Msa0485510:intron | 30.0% | |
| TGCAACATGACAAATATAAC+AGG | + | chr3_4:3205169-3205188 | None:intergenic | 30.0% | |
| GTTCTTGATCTGATTCTTAT+TGG | - | chr3_4:3205352-3205371 | Msa0485510:CDS | 30.0% | |
| TTGATCTGATTCTTATTGGA+AGG | - | chr3_4:3205356-3205375 | Msa0485510:exon | 30.0% | |
| TTCTTATTGGAAGGTTGAAA+CGG | - | chr3_4:3205365-3205384 | Msa0485510:exon | 30.0% | |
| TTTCAAGAGCAGAGGTAAAA+GGG | + | chr3_4:3202106-3202125 | None:intergenic | 35.0% | |
| !! | CTCTAAAATGAAAGGCTACT+AGG | + | chr3_4:3202598-3202617 | None:intergenic | 35.0% |
| CAAACACCCAAAAATGACAA+AGG | - | chr3_4:3202639-3202658 | Msa0485510:intron | 35.0% | |
| TTTGATGTGCTTTGCTTGTT+TGG | - | chr3_4:3202707-3202726 | Msa0485510:CDS | 35.0% | |
| ! | CTCAAGGTTGGCATTTATTT+TGG | - | chr3_4:3203031-3203050 | Msa0485510:CDS | 35.0% |
| CCAACAAGTAAAAACACAAG+AGG | + | chr3_4:3203057-3203076 | None:intergenic | 35.0% | |
| !! | CCTCTTGTGTTTTTACTTGT+TGG | - | chr3_4:3203054-3203073 | Msa0485510:intron | 35.0% |
| GGTTAAGTTCAATGTAAACC+GGG | - | chr3_4:3203194-3203213 | Msa0485510:intron | 35.0% | |
| ! | TAACATAGTAAGTGTTGCCT+GGG | + | chr3_4:3203467-3203486 | None:intergenic | 35.0% |
| ! | TTAACATAGTAAGTGTTGCC+TGG | + | chr3_4:3203468-3203487 | None:intergenic | 35.0% |
| ! | TATCAATTTTGTGCAGAGAG+TGG | - | chr3_4:3203556-3203575 | Msa0485510:intron | 35.0% |
| AATTGAAGCCTTAACTGACT+TGG | - | chr3_4:3203683-3203702 | Msa0485510:CDS | 35.0% | |
| TATTATACCCATTGACGCTT+TGG | + | chr3_4:3203748-3203767 | None:intergenic | 35.0% | |
| ! | TCCTTTGTCTCTCTATTTTC+AGG | - | chr3_4:3203815-3203834 | Msa0485510:intron | 35.0% |
| TCCTGAAAATAGAGAGACAA+AGG | + | chr3_4:3203819-3203838 | None:intergenic | 35.0% | |
| TCACTCTTTGTGCAAACATA+TGG | + | chr3_4:3203874-3203893 | None:intergenic | 35.0% | |
| TATGTTTGCACAAAGAGTGA+TGG | - | chr3_4:3203874-3203893 | Msa0485510:intron | 35.0% | |
| AGAATCTGAAGAGTTGAAGA+GGG | + | chr3_4:3204046-3204065 | None:intergenic | 35.0% | |
| AAGAATCTGAAGAGTTGAAG+AGG | + | chr3_4:3204047-3204066 | None:intergenic | 35.0% | |
| TCTTCAACTCTTCAGATTCT+TGG | - | chr3_4:3204046-3204065 | Msa0485510:CDS | 35.0% | |
| ! | GAAACTGTTTGTGTTTTGTC+AGG | - | chr3_4:3204169-3204188 | Msa0485510:intron | 35.0% |
| GGACAAGTGACTGTTATTAT+TGG | - | chr3_4:3204190-3204209 | Msa0485510:intron | 35.0% | |
| ! | GCGACTTGACTTTTATGATA+AGG | - | chr3_4:3204542-3204561 | Msa0485510:intron | 35.0% |
| TGACATCAATGTTCTTACGA+GGG | + | chr3_4:3204575-3204594 | None:intergenic | 35.0% | |
| ATGACATCAATGTTCTTACG+AGG | + | chr3_4:3204576-3204595 | None:intergenic | 35.0% | |
| CATGCTATGAGAAAATGAGA+TGG | + | chr3_4:3204657-3204676 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTGATGCTATATGG+TGG | - | chr3_4:3204737-3204756 | Msa0485510:intron | 35.0% |
| AACTGTTGCAGATACAGAAA+TGG | - | chr3_4:3204862-3204881 | Msa0485510:intron | 35.0% | |
| !! | CTTCTTCTTCTTGGTTTTCT+TGG | + | chr3_4:3204906-3204925 | None:intergenic | 35.0% |
| ! | AGCTTTTTGCTTCTTCTTCT+TGG | + | chr3_4:3204915-3204934 | None:intergenic | 35.0% |
| AAGGCTGCAGAAATTACAAA+TGG | - | chr3_4:3204962-3204981 | Msa0485510:intron | 35.0% | |
| GGATGCTGAATAAACTAGAA+TGG | - | chr3_4:3205132-3205151 | Msa0485510:intron | 35.0% | |
| TATAATCATGCTGGGAAACA+TGG | + | chr3_4:3205310-3205329 | None:intergenic | 35.0% | |
| CTAGAAATGTGTCTGAGTGA+GGG | + | chr3_4:3201907-3201926 | None:intergenic | 40.0% | |
| CTCACTCAGACACATTTCTA+GGG | - | chr3_4:3201906-3201925 | Msa0485510:three_prime_UTR | 40.0% | |
| !! | AGAAAGAGTGCCATTGTTGA+TGG | + | chr3_4:3201945-3201964 | None:intergenic | 40.0% |
| GCTTAACAACTTTACCGAAG+CGG | + | chr3_4:3202070-3202089 | None:intergenic | 40.0% | |
| CTTTCAAGAGCAGAGGTAAA+AGG | + | chr3_4:3202107-3202126 | None:intergenic | 40.0% | |
| AAGAAGGCAAAGTTCAGCTT+AGG | - | chr3_4:3202884-3202903 | Msa0485510:intron | 40.0% | |
| ! | ACAAACTCGTTACTTTGGAC+TGG | + | chr3_4:3202959-3202978 | None:intergenic | 40.0% |
| TTTGTGTGCGAACTTATTCG+TGG | - | chr3_4:3202974-3202993 | Msa0485510:CDS | 40.0% | |
| !! | CAAGTTTGTTGGTGATCTCA+AGG | - | chr3_4:3203015-3203034 | Msa0485510:CDS | 40.0% |
| !! | TTTGTTGGTGATCTCAAGGT+TGG | - | chr3_4:3203019-3203038 | Msa0485510:CDS | 40.0% |
| ACAGGTCAAAATGGGCAAAA+GGG | + | chr3_4:3203082-3203101 | None:intergenic | 40.0% | |
| TACAGGTCAAAATGGGCAAA+AGG | + | chr3_4:3203083-3203102 | None:intergenic | 40.0% | |
| ! | ATAGCAAGGTGATTTGGAGA+AGG | - | chr3_4:3203134-3203153 | Msa0485510:intron | 40.0% |
| ! | TGTAAACCGGGTTGACAATA+TGG | - | chr3_4:3203206-3203225 | Msa0485510:intron | 40.0% |
| GAATGACCATATTGTCAACC+CGG | + | chr3_4:3203215-3203234 | None:intergenic | 40.0% | |
| CCTTATCAAGTGTATCGAGA+AGG | + | chr3_4:3203248-3203267 | None:intergenic | 40.0% | |
| CCTTCTCGATACACTTGATA+AGG | - | chr3_4:3203245-3203264 | Msa0485510:CDS | 40.0% | |
| ! | AGTGGGAGATTGTGATTTGT+GGG | - | chr3_4:3203415-3203434 | Msa0485510:CDS | 40.0% |
| TGGCGATGAAGATAAAGCAA+AGG | - | chr3_4:3203707-3203726 | Msa0485510:CDS | 40.0% | |
| ! | TGATGGACCTATCTGATTAC+AGG | - | chr3_4:3203891-3203910 | Msa0485510:intron | 40.0% |
| ACCTATCTGATTACAGGAGA+AGG | - | chr3_4:3203897-3203916 | Msa0485510:intron | 40.0% | |
| ACCTTCTCCTGTAATCAGAT+AGG | + | chr3_4:3203901-3203920 | None:intergenic | 40.0% | |
| ATTTGTGAGACTACCAGCAT+GGG | + | chr3_4:3204011-3204030 | None:intergenic | 40.0% | |
| AATTTGTGAGACTACCAGCA+TGG | + | chr3_4:3204012-3204031 | None:intergenic | 40.0% | |
| GAATCTGAAGAGTTGAAGAG+GGG | + | chr3_4:3204045-3204064 | None:intergenic | 40.0% | |
| ! | TTCAGGGCATTAAAAACGAG+AGG | - | chr3_4:3204256-3204275 | Msa0485510:intron | 40.0% |
| AGAGGCAACACTCCTAAATA+TGG | - | chr3_4:3204274-3204293 | Msa0485510:intron | 40.0% | |
| CTCGACCAATAAAAGAAGAG+TGG | + | chr3_4:3204309-3204328 | None:intergenic | 40.0% | |
| ! | TTTGGTGTGTTCTGCAGAAA+AGG | - | chr3_4:3204476-3204495 | Msa0485510:CDS | 40.0% |
| TTGGTGTGTTCTGCAGAAAA+GGG | - | chr3_4:3204477-3204496 | Msa0485510:CDS | 40.0% | |
| !! | GAAAAGGGTACTTCAGCATT+TGG | - | chr3_4:3204492-3204511 | Msa0485510:intron | 40.0% |
| GACATCAATGTTCTTACGAG+GGG | + | chr3_4:3204574-3204593 | None:intergenic | 40.0% | |
| GCTATGAGAAAATGAGATGG+AGG | + | chr3_4:3204654-3204673 | None:intergenic | 40.0% | |
| ! | TATTTCTGCCTGCTACTACA+TGG | - | chr3_4:3204701-3204720 | Msa0485510:intron | 40.0% |
| ATTTCTGCCTGCTACTACAT+GGG | - | chr3_4:3204702-3204721 | Msa0485510:intron | 40.0% | |
| !! | TGGGGGTCTTTTCCATTTTT+TGG | - | chr3_4:3204721-3204740 | Msa0485510:intron | 40.0% |
| AAGAAGCAAAAAGCTGCAGA+TGG | - | chr3_4:3204920-3204939 | Msa0485510:intron | 40.0% | |
| AGATGACATGGCTGTAGATA+AGG | - | chr3_4:3204943-3204962 | Msa0485510:intron | 40.0% | |
| ! | AATTACAAATGGTGATGCGG+AGG | - | chr3_4:3204973-3204992 | Msa0485510:intron | 40.0% |
| AGAGAAGAGAAAGTTGGATC+AGG | - | chr3_4:3205027-3205046 | Msa0485510:intron | 40.0% | |
| CAGGATAAGGTTGTAGATGA+TGG | - | chr3_4:3205061-3205080 | Msa0485510:intron | 40.0% | |
| TGTGTCTGAGTGAGGGAAAA+GGG | + | chr3_4:3201900-3201919 | None:intergenic | 45.0% | |
| ATGTGTCTGAGTGAGGGAAA+AGG | + | chr3_4:3201901-3201920 | None:intergenic | 45.0% | |
| CCTAGAAATGTGTCTGAGTG+AGG | + | chr3_4:3201908-3201927 | None:intergenic | 45.0% | |
| CCTCACTCAGACACATTTCT+AGG | - | chr3_4:3201905-3201924 | Msa0485510:three_prime_UTR | 45.0% | |
| ! | TCGTTTTCGGCCATCAACAA+TGG | - | chr3_4:3201932-3201951 | Msa0485510:three_prime_UTR | 45.0% |
| CATAACCAAGAGCAGTTTCG+TGG | + | chr3_4:3201971-3201990 | None:intergenic | 45.0% | |
| ! | TATGCCTTGTTCGAAGCTCA+TGG | - | chr3_4:3201987-3202006 | Msa0485510:three_prime_UTR | 45.0% |
| GATTCCATGAGCTTCGAACA+AGG | + | chr3_4:3201994-3202013 | None:intergenic | 45.0% | |
| GCTCATGGAATCGACGAAAT+CGG | - | chr3_4:3202002-3202021 | Msa0485510:three_prime_UTR | 45.0% | |
| TTTACCGAAGCGGCTCAAAT+CGG | + | chr3_4:3202060-3202079 | None:intergenic | 45.0% | |
| TTCGAGACTTTCAAGAGCAG+AGG | + | chr3_4:3202114-3202133 | None:intergenic | 45.0% | |
| CAAATCAACGCCGTTTCTGA+AGG | - | chr3_4:3202134-3202153 | Msa0485510:three_prime_UTR | 45.0% | |
| !! | GTTTGTTGGTGGCGATGTAA+AGG | - | chr3_4:3202800-3202819 | Msa0485510:CDS | 45.0% |
| GTATTATGACCGATGAGCTG+AGG | - | chr3_4:3202822-3202841 | Msa0485510:intron | 45.0% | |
| CAAAACAGTCCTCAGCTCAT+CGG | + | chr3_4:3202834-3202853 | None:intergenic | 45.0% | |
| ! | GGTGTAGCAGAGTCTAAGAT+CGG | - | chr3_4:3202905-3202924 | Msa0485510:intron | 45.0% |
| CGCACACAAACTCGTTACTT+TGG | + | chr3_4:3202964-3202983 | None:intergenic | 45.0% | |
| ATTCATTCGCCATGAGAGTC+AGG | - | chr3_4:3203274-3203293 | Msa0485510:CDS | 45.0% | |
| CCTATAGTACCTGACTCTCA+TGG | + | chr3_4:3203286-3203305 | None:intergenic | 45.0% | |
| CCATGAGAGTCAGGTACTAT+AGG | - | chr3_4:3203283-3203302 | Msa0485510:CDS | 45.0% | |
| !! | TTCACATCTGCTTTTGCGCA+TGG | - | chr3_4:3203358-3203377 | Msa0485510:CDS | 45.0% |
| ! | TGGTTTGTGTGTGTGTGTTG+GGG | + | chr3_4:3203392-3203411 | None:intergenic | 45.0% |
| ! | CTGGTTTGTGTGTGTGTGTT+GGG | + | chr3_4:3203393-3203412 | None:intergenic | 45.0% |
| CAACACACACACACAAACCA+GGG | - | chr3_4:3203392-3203411 | Msa0485510:CDS | 45.0% | |
| GAGTGGGAGATTGTGATTTG+TGG | - | chr3_4:3203414-3203433 | Msa0485510:CDS | 45.0% | |
| TGTGCAGAGAGTGGTATTCA+TGG | - | chr3_4:3203565-3203584 | Msa0485510:CDS | 45.0% | |
| !! | GAAGCCTTAACTGACTTGGT+TGG | - | chr3_4:3203687-3203706 | Msa0485510:CDS | 45.0% |
| ATCGCCAACCAAGTCAGTTA+AGG | + | chr3_4:3203694-3203713 | None:intergenic | 45.0% | |
| TATACCCATTGACGCTTTGG+CGG | + | chr3_4:3203745-3203764 | None:intergenic | 45.0% | |
| GACATTGATCAAGTCCACAG+GGG | + | chr3_4:3203852-3203871 | None:intergenic | 45.0% | |
| GGACATTGATCAAGTCCACA+GGG | + | chr3_4:3203853-3203872 | None:intergenic | 45.0% | |
| TGGACATTGATCAAGTCCAC+AGG | + | chr3_4:3203854-3203873 | None:intergenic | 45.0% | |
| CCAACTAGCGACTGCAAATT+TGG | + | chr3_4:3203962-3203981 | None:intergenic | 45.0% | |
| CCAAATTTGCAGTCGCTAGT+TGG | - | chr3_4:3203959-3203978 | Msa0485510:intron | 45.0% | |
| !! | TCGCTAGTTGGTGATAGTGT+TGG | - | chr3_4:3203971-3203990 | Msa0485510:intron | 45.0% |
| ! | TCAGATTCTTGGTGCAGAGA+AGG | - | chr3_4:3204057-3204076 | Msa0485510:CDS | 45.0% |
| TTGCAAGATAGCGAGCCATT+CGG | + | chr3_4:3204351-3204370 | None:intergenic | 45.0% | |
| ! | GCGCATCTGAATCATGCTTT+TGG | - | chr3_4:3204458-3204477 | Msa0485510:CDS | 45.0% |
| GAAAATGAGATGGAGGCAGT+AGG | + | chr3_4:3204647-3204666 | None:intergenic | 45.0% | |
| TTTCTGCCTGCTACTACATG+GGG | - | chr3_4:3204703-3204722 | Msa0485510:intron | 45.0% | |
| GAAGAGAAAGTTGGATCAGG+AGG | - | chr3_4:3205030-3205049 | Msa0485510:intron | 45.0% | |
| GGAGGATGAAGTTCAGGATA+AGG | - | chr3_4:3205048-3205067 | Msa0485510:intron | 45.0% | |
| CTTCTTGCTTGAATCAGCGT+TGG | + | chr3_4:3205089-3205108 | None:intergenic | 45.0% | |
| GTGTCTGAGTGAGGGAAAAG+GGG | + | chr3_4:3201899-3201918 | None:intergenic | 50.0% | |
| CTTCTCCACGAAACTGCTCT+TGG | - | chr3_4:3201963-3201982 | Msa0485510:three_prime_UTR | 50.0% | |
| !! | GTTACCGATTTGAGCCGCTT+CGG | - | chr3_4:3202053-3202072 | Msa0485510:three_prime_UTR | 50.0% |
| ! | CGATGAGCTGAGGACTGTTT+TGG | - | chr3_4:3202832-3202851 | Msa0485510:intron | 50.0% |
| GCGAACTTATTCGTGGTGTC+AGG | - | chr3_4:3202981-3203000 | Msa0485510:CDS | 50.0% | |
| ! | GATTTGGAGAAGGCACAGCT+TGG | - | chr3_4:3203144-3203163 | Msa0485510:intron | 50.0% |
| !! | CCTTAGCTCTGCTGTAACTG+TGG | + | chr3_4:3203176-3203195 | None:intergenic | 50.0% |
| CCACAGTTACAGCAGAGCTA+AGG | - | chr3_4:3203173-3203192 | Msa0485510:intron | 50.0% | |
| ! | TGCTTTTGCGCATGGTCTAC+TGG | - | chr3_4:3203366-3203385 | Msa0485510:CDS | 50.0% |
| ! | CCTGGTTTGTGTGTGTGTGT+TGG | + | chr3_4:3203394-3203413 | None:intergenic | 50.0% |
| CCAACACACACACACAAACC+AGG | - | chr3_4:3203391-3203410 | Msa0485510:CDS | 50.0% | |
| ACACACACAAACCAGGGAGT+GGG | - | chr3_4:3203398-3203417 | Msa0485510:CDS | 50.0% | |
| AATCACAATCTCCCACTCCC+TGG | + | chr3_4:3203412-3203431 | None:intergenic | 50.0% | |
| AGGACAAGATTTGTCCCCTG+TGG | - | chr3_4:3203835-3203854 | Msa0485510:intron | 50.0% | |
| GCTCGTTTGATATCCCATGC+TGG | - | chr3_4:3203995-3204014 | Msa0485510:intron | 50.0% | |
| !! | GTGCAGAGAAGGCTTTGTTC+AGG | - | chr3_4:3204068-3204087 | Msa0485510:CDS | 50.0% |
| CGAGCATCTGCCAGAAACAA+AGG | - | chr3_4:3204325-3204344 | Msa0485510:CDS | 50.0% | |
| TGCCAGAAACAAAGGCCGAA+TGG | - | chr3_4:3204333-3204352 | Msa0485510:CDS | 50.0% | |
| ! | AGCCATTCGGCCTTTGTTTC+TGG | + | chr3_4:3204338-3204357 | None:intergenic | 50.0% |
| TGATTCAGATGCGCAGCGTA+AGG | + | chr3_4:3204452-3204471 | None:intergenic | 50.0% | |
| ! | GTCGCTCTTCAACTTGCTCA+CGG | + | chr3_4:3204527-3204546 | None:intergenic | 50.0% |
| TGGAGGCAGTAGGTCTCATA+GGG | + | chr3_4:3204637-3204656 | None:intergenic | 50.0% | |
| ATGGAGGCAGTAGGTCTCAT+AGG | + | chr3_4:3204638-3204657 | None:intergenic | 50.0% | |
| TTCTGCCTGCTACTACATGG+GGG | - | chr3_4:3204704-3204723 | Msa0485510:intron | 50.0% | |
| AAAGACCCCCATGTAGTAGC+AGG | + | chr3_4:3204712-3204731 | None:intergenic | 50.0% | |
| AGCTGCAGATGGAGATGACA+TGG | - | chr3_4:3204931-3204950 | Msa0485510:intron | 50.0% | |
| GGATCAGGAGGATGAAGTTC+AGG | - | chr3_4:3205042-3205061 | Msa0485510:intron | 50.0% | |
| ATCATGCTGGGAAACATGGC+AGG | + | chr3_4:3205306-3205325 | None:intergenic | 50.0% | |
| CACACACACAAACCAGGGAG+TGG | - | chr3_4:3203397-3203416 | Msa0485510:CDS | 55.0% | |
| GGGACACTTGTGTGCTTGAG+TGG | + | chr3_4:3203447-3203466 | None:intergenic | 55.0% | |
| CTCAAGCACACAAGTGTCCC+AGG | - | chr3_4:3203447-3203466 | Msa0485510:CDS | 55.0% | |
| ! | AGAAGCCGCCAAAGCGTCAA+TGG | - | chr3_4:3203737-3203756 | Msa0485510:intron | 55.0% |
| ! | GAAGCCGCCAAAGCGTCAAT+GGG | - | chr3_4:3203738-3203757 | Msa0485510:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 3201874 | 3205450 | 3201874 | ID=Msa0485510;Name=Msa0485510 |
| chr3_4 | mRNA | 3201874 | 3205450 | 3201874 | ID=Msa0485510-mRNA-1;Parent=Msa0485510;Name=Msa0485510-mRNA-1;_AED=0.05;_eAED=0.05;_QI=77|1|1|1|1|1|8|306|523 |
| chr3_4 | exon | 3201874 | 3202451 | 3201874 | ID=Msa0485510-mRNA-1:exon:1126;Parent=Msa0485510-mRNA-1 |
| chr3_4 | exon | 3202700 | 3202831 | 3202700 | ID=Msa0485510-mRNA-1:exon:1125;Parent=Msa0485510-mRNA-1 |
| chr3_4 | exon | 3202915 | 3203063 | 3202915 | ID=Msa0485510-mRNA-1:exon:1124;Parent=Msa0485510-mRNA-1 |
| chr3_4 | exon | 3203235 | 3203487 | 3203235 | ID=Msa0485510-mRNA-1:exon:1123;Parent=Msa0485510-mRNA-1 |
| chr3_4 | exon | 3203565 | 3203752 | 3203565 | ID=Msa0485510-mRNA-1:exon:1122;Parent=Msa0485510-mRNA-1 |
| chr3_4 | exon | 3204029 | 3204186 | 3204029 | ID=Msa0485510-mRNA-1:exon:1121;Parent=Msa0485510-mRNA-1 |
| chr3_4 | exon | 3204288 | 3204502 | 3204288 | ID=Msa0485510-mRNA-1:exon:1120;Parent=Msa0485510-mRNA-1 |
| chr3_4 | exon | 3205169 | 3205450 | 3205169 | ID=Msa0485510-mRNA-1:exon:1119;Parent=Msa0485510-mRNA-1 |
| chr3_4 | five_prime_UTR | 3205374 | 3205450 | 3205374 | ID=Msa0485510-mRNA-1:five_prime_utr;Parent=Msa0485510-mRNA-1 |
| chr3_4 | CDS | 3205169 | 3205373 | 3205169 | ID=Msa0485510-mRNA-1:cds;Parent=Msa0485510-mRNA-1 |
| chr3_4 | CDS | 3204288 | 3204502 | 3204288 | ID=Msa0485510-mRNA-1:cds;Parent=Msa0485510-mRNA-1 |
| chr3_4 | CDS | 3204029 | 3204186 | 3204029 | ID=Msa0485510-mRNA-1:cds;Parent=Msa0485510-mRNA-1 |
| chr3_4 | CDS | 3203565 | 3203752 | 3203565 | ID=Msa0485510-mRNA-1:cds;Parent=Msa0485510-mRNA-1 |
| chr3_4 | CDS | 3203235 | 3203487 | 3203235 | ID=Msa0485510-mRNA-1:cds;Parent=Msa0485510-mRNA-1 |
| chr3_4 | CDS | 3202915 | 3203063 | 3202915 | ID=Msa0485510-mRNA-1:cds;Parent=Msa0485510-mRNA-1 |
| chr3_4 | CDS | 3202700 | 3202831 | 3202700 | ID=Msa0485510-mRNA-1:cds;Parent=Msa0485510-mRNA-1 |
| chr3_4 | CDS | 3202180 | 3202451 | 3202180 | ID=Msa0485510-mRNA-1:cds;Parent=Msa0485510-mRNA-1 |
| chr3_4 | three_prime_UTR | 3201874 | 3202179 | 3201874 | ID=Msa0485510-mRNA-1:three_prime_utr;Parent=Msa0485510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
