AlfalfaGEDB | Msa0482200

M. sativa cultivar zhongmu-4 / Msa0482200

KEGG: K14564
GO: -
PFAM: PF08156.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482200	XP_039689177.1	98.853	523	6	0	1	523	1	523	0.0	1055

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482200	sp\|O00567\|NOP56_HUMAN	58.389	447	174	2	3	449	4	438	0.0	536

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482200	B7FLU4	98.664	524	6	1	1	523	1	524	0.0	1050

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044890	Msa0482200	0.822935	1.814806e-53	-8.615850e-47
Msa0068970	Msa0482200	0.809203	2.124624e-50	-8.615850e-47
Msa0164770	Msa0482200	0.844530	7.141573e-59	-8.615850e-47
Msa0194770	Msa0482200	0.850625	1.504932e-60	-8.615850e-47
Msa0231030	Msa0482200	0.834263	3.316101e-56	-8.615850e-47
Msa0236650	Msa0482200	0.859014	5.543519e-63	-8.615850e-47
Msa0297630	Msa0482200	0.845926	2.993320e-59	-8.615850e-47
Msa0342850	Msa0482200	0.813104	3.030243e-51	-8.615850e-47
Msa0482200	Msa0485510	0.936167	2.675827e-97	-8.615850e-47
Msa0482200	Msa0486070	0.831895	1.287826e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482200	MtrunA17_Chr4g0057761	98.664	524	6	1	1	523	1	524	0.0	1050
Msa0482200	MtrunA17_Chr4g0035431	43.243	407	216	4	3	408	1	393	4.49e-103	320
Msa0482200	MtrunA17_Chr5g0397481	42.892	408	216	5	3	408	1	393	1.40e-102	320
Msa0482200	MtrunA17_Chr7g0228641	27.273	220	152	2	192	409	117	330	3.20e-18	87.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482200	AT1G56110.1	78.899	436	92	0	1	436	1	436	0.0	749
Msa0482200	AT3G12860.1	79.909	438	88	0	1	438	1	438	0.0	743
Msa0482200	AT3G05060.1	43.578	436	232	7	3	437	2	424	4.92e-110	338
Msa0482200	AT5G27120.1	45.320	406	209	6	3	408	1	393	2.17e-109	336
Msa0482200	AT5G27140.2	40.385	364	205	4	96	456	57	411	2.83e-78	253
Msa0482200	AT5G27140.1	40.110	364	204	5	96	456	57	409	6.74e-76	246
Msa0482200	AT1G60170.1	25.850	147	109	0	273	419	194	340	4.58e-15	78.2

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Find 115 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGAGAAGAGAAAGT+TGG	0.395833	3_3:-88633277	Msa0482200:CDS
AACTGTTGCAGATACAGAAA+TGG	0.437507	3_3:-88633436	Msa0482200:intron
AACTTACCTAAAGTTAAGGA+AGG	0.604940	3_3:-88635425	Msa0482200:CDS
AAGAAGGCAAAGTTCAGCTT+AGG	0.488720	3_3:-88635401	Msa0482200:CDS
AAGAATCTGAAGAGTTGAAG+AGG	0.512414	3_3:+88634252	None:intergenic
AAGGCTGCAGAAATTACAAA+TGG	0.539269	3_3:-88633336	Msa0482200:CDS
AATTACAAATGGTGATGCGG+AGG	0.625035	3_3:-88633325	Msa0482200:CDS
AATTCAATAGCAAGGTGATT+TGG	0.344786	3_3:-88635157	Msa0482200:intron
AATTGAAGCCTTAACTGACT+TGG	0.536133	3_3:-88634613	Msa0482200:CDS
AATTTGTGAGACTACCAGCA+TGG	0.634495	3_3:+88634287	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGTTTATTACCTTCAGAAA+CGG	+	chr3_3:88633137-88633156	None:intergenic	30.0%
GACTAACTTACCTAAAGTTA+AGG	-	chr3_3:88633845-88633864	Msa0482200:intron	30.0%
AACTTACCTAAAGTTAAGGA+AGG	-	chr3_3:88633849-88633868	Msa0482200:intron	30.0%
TTCTTACCTTCCTTAACTTT+AGG	+	chr3_3:88633858-88633877	None:intergenic	30.0%
TAAAGTTAAGGAAGGTAAGA+AGG	-	chr3_3:88633857-88633876	Msa0482200:intron	30.0%
TGCATTTGAATTCAATAGCA+AGG	-	chr3_3:88634109-88634128	Msa0482200:intron	30.0%
AATTCAATAGCAAGGTGATT+TGG	-	chr3_3:88634117-88634136	Msa0482200:intron	30.0%
AGGTTAAGTTCAATGTAAAC+CGG	-	chr3_3:88634182-88634201	Msa0482200:intron	30.0%
TCAGAGAGCTATAAACTTAT+AGG	-	chr3_3:88634493-88634512	Msa0482200:intron	30.0%
TTTACAATCTTCACAAGTTC+AGG	+	chr3_3:88634575-88634594	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	88632871	88636425	88632871	ID=Msa0482200;Name=Msa0482200
chr3_3	mRNA	88632871	88636425	88632871	ID=Msa0482200-mRNA-1;Parent=Msa0482200;Name=Msa0482200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=70\|1\|1\|1\|1\|1\|8\|305\|523
chr3_3	exon	88632871	88633447	88632871	ID=Msa0482200-mRNA-1:exon:25954;Parent=Msa0482200-mRNA-1
chr3_3	exon	88633696	88633827	88633696	ID=Msa0482200-mRNA-1:exon:25953;Parent=Msa0482200-mRNA-1
chr3_3	exon	88633911	88634059	88633911	ID=Msa0482200-mRNA-1:exon:25952;Parent=Msa0482200-mRNA-1
chr3_3	exon	88634229	88634481	88634229	ID=Msa0482200-mRNA-1:exon:25951;Parent=Msa0482200-mRNA-1
chr3_3	exon	88634559	88634746	88634559	ID=Msa0482200-mRNA-1:exon:25950;Parent=Msa0482200-mRNA-1
chr3_3	exon	88635012	88635169	88635012	ID=Msa0482200-mRNA-1:exon:25949;Parent=Msa0482200-mRNA-1
chr3_3	exon	88635271	88635485	88635271	ID=Msa0482200-mRNA-1:exon:25948;Parent=Msa0482200-mRNA-1
chr3_3	exon	88636151	88636425	88636151	ID=Msa0482200-mRNA-1:exon:25947;Parent=Msa0482200-mRNA-1
chr3_3	five_prime_UTR	88636356	88636425	88636356	ID=Msa0482200-mRNA-1:five_prime_utr;Parent=Msa0482200-mRNA-1
chr3_3	CDS	88636151	88636355	88636151	ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1
chr3_3	CDS	88635271	88635485	88635271	ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1
chr3_3	CDS	88635012	88635169	88635012	ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1
chr3_3	CDS	88634559	88634746	88634559	ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1
chr3_3	CDS	88634229	88634481	88634229	ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1
chr3_3	CDS	88633911	88634059	88633911	ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1
chr3_3	CDS	88633696	88633827	88633696	ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1
chr3_3	CDS	88633176	88633447	88633176	ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1
chr3_3	three_prime_UTR	88632871	88633175	88632871	ID=Msa0482200-mRNA-1:three_prime_utr;Parent=Msa0482200-mRNA-1

Gene Sequence

>Msa0482200

ATGGCACTCTTTCTTCTCCACGAAACTGCTCTTGGTTATGCCTTGTTCGAAGCTCATGGAATCGACGAAATCGGTCAGAACACTGAAGCTGTTCGCAACTCTGTTACCGATTTGAGCCGCTTCGGTAAAGTTGTTAAGCTTCGTTCGTTCAACCCTTTTACCTCTGCTCTTGAAAGTCTCGAACAAATCAACGCCGTTTCTGAAGGTATTATGACCGATGAGCTGAGGACTGTTTTGGAGACTAACTTACCTAAAGTTAAGGAAGGTAAGAAGGCAAAGTTCAGCTTAGGTGTAGCAGAGTCTAAGATCGGTTCACATATACATGAAGCAACTAAAATTCCAGTCCAAAGTAACGAGTTTGTGTGCGAACTTATTCGTGGTGTCAGGCAACATTTTGACAAGTTTGTTGGTGATCTCAAGCAAGGTGATTTGGAGAAGGCACAGCTTGGTCTTTGCCACAGTTACAGCAGAGCTAAGGTTAAGTTCAATGTAAACCGGGTTGACAATATGGTCATTCAAGCAATCTTCCTTCTCGATACACTTGATAAGGATGTCAATTCATTCGCCATGAGAGTCAGAGAGTGGTATTCATGGCATTTTCCTGAACTTGTGAAGATTGTAAATGATAATTATCTGTATTGCAAAGTTGCAAAATTTATTGAGGATAAGTCTAAGTTGGCTGAAGACAAAATTGAAGCCTTAACTGACTTGGTAGGCGATGAAGATAAAGCAAAGGAGATTGTAGAAGCCGCCAAAGCGTCAATGGGACAAGATTTGTCCCCTGTGGACTTGATCAATGTCCATATGTTTGCACAAAGAGTGATGGACCTATCTGATTACAGGAGAAGGTTGTCTGATTATCTGAGCACTAAAATGAATGATATTGCACCAAATTTGCAGTCGCTAGTTGGTGATAGTGTTGGTGCTCGTTTGATATCCCATGCTGGTAGTCTCACAAATTTAGCTAAGTGCCCCTCTTCAACTCTTCAGATTCTTGGTGCAGAGAAGGCTTTGTTCAGGGCATTAAAAACGAGAGGCAACACTCCTAAATATGGTCTTATATTCCACTCTTCTTTTATTGGTCGAGCATCTGCCAGAAACAAAGGCCGAATGGCTCGCTATCTTGCAAACAAATGCTCAATTGCATCAAGAATAGATTGCTTTTCCGAAAAGGGTACTTCAGCATTTGGAGATAAACTCCGTGAGCAAGTTGAAGAGCGACTTGACTTTTATGATAAGGGAGTTGCCCCTCGTAAGAACATTGATGTCATGAAGTCTGCTATTGAAAGTGTTGATAAAGATACAGAAATGGAAACAGAAGAAGTTTCAGCCAAGAAAACCAAGAAGAAGAAGCAAAAAGCTGCAGATGGAGATGACATGGCTGTAGATAAGGCTGCAGAAATTACAAATGGTGATGCGGAGGATCACAAGTCAGAAAAGAAGAAGAAAAAGAAAGAGAAGAGAAAGTTGGATCAGGAGGATGAAGTTCAGGATAAGGTTGTAGATGATGGTGCCAACGCTGATTCAAGCAAGAAGAAGAAAAAGAAATCAAAAAAGAAGGATGCTGAATAA

Protein sequence

>Msa0482200

MALFLLHETALGYALFEAHGIDEIGQNTEAVRNSVTDLSRFGKVVKLRSFNPFTSALESLEQINAVSEGIMTDELRTVLETNLPKVKEGKKAKFSLGVAESKIGSHIHEATKIPVQSNEFVCELIRGVRQHFDKFVGDLKQGDLEKAQLGLCHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDVNSFAMRVREWYSWHFPELVKIVNDNYLYCKVAKFIEDKSKLAEDKIEALTDLVGDEDKAKEIVEAAKASMGQDLSPVDLINVHMFAQRVMDLSDYRRRLSDYLSTKMNDIAPNLQSLVGDSVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFSEKGTSAFGDKLREQVEERLDFYDKGVAPRKNIDVMKSAIESVDKDTEMETEEVSAKKTKKKKQKAADGDDMAVDKAAEITNGDAEDHKSEKKKKKKEKRKLDQEDEVQDKVVDDGANADSSKKKKKKSKKKDAE*