Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482200 | XP_039689177.1 | 98.853 | 523 | 6 | 0 | 1 | 523 | 1 | 523 | 0.0 | 1055 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482200 | sp|O00567|NOP56_HUMAN | 58.389 | 447 | 174 | 2 | 3 | 449 | 4 | 438 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482200 | B7FLU4 | 98.664 | 524 | 6 | 1 | 1 | 523 | 1 | 524 | 0.0 | 1050 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044890 | Msa0482200 | 0.822935 | 1.814806e-53 | -8.615850e-47 |
| Msa0068970 | Msa0482200 | 0.809203 | 2.124624e-50 | -8.615850e-47 |
| Msa0164770 | Msa0482200 | 0.844530 | 7.141573e-59 | -8.615850e-47 |
| Msa0194770 | Msa0482200 | 0.850625 | 1.504932e-60 | -8.615850e-47 |
| Msa0231030 | Msa0482200 | 0.834263 | 3.316101e-56 | -8.615850e-47 |
| Msa0236650 | Msa0482200 | 0.859014 | 5.543519e-63 | -8.615850e-47 |
| Msa0482200 | Msa0485510 | 0.936167 | 2.675827e-97 | -8.615850e-47 |
| Msa0482200 | Msa0486070 | 0.831895 | 1.287826e-55 | -8.615850e-47 |
| Msa0482200 | Msa0648620 | 0.807700 | 4.447439e-50 | -8.615850e-47 |
| Msa0482200 | Msa0659050 | 0.846053 | 2.765524e-59 | -8.615850e-47 |
| Msa0482200 | Msa0686660 | 0.821147 | 4.712258e-53 | -8.615850e-47 |
| Msa0482200 | Msa0687440 | 0.803466 | 3.440495e-49 | -8.615850e-47 |
| Msa0482200 | Msa0704980 | 0.826855 | 2.157135e-54 | -8.615850e-47 |
| Msa0482200 | Msa1012770 | 0.812681 | 3.751377e-51 | -8.615850e-47 |
| Msa0482200 | Msa1027640 | 0.820517 | 6.579487e-53 | -8.615850e-47 |
| Msa0482200 | Msa1066190 | 0.823872 | 1.096204e-53 | -8.615850e-47 |
| Msa0482200 | Msa1155180 | 0.815904 | 7.278759e-52 | -8.615850e-47 |
| Msa0482200 | Msa1209850 | 0.842562 | 2.397121e-58 | -8.615850e-47 |
| Msa0482200 | Msa1218110 | 0.819438 | 1.161424e-52 | -8.615850e-47 |
| Msa0482200 | Msa1225720 | 0.955183 | 5.441509e-113 | -8.615850e-47 |
| Msa0482200 | Msa1258390 | 0.966385 | 7.517406e-126 | -8.615850e-47 |
| Msa0482200 | Msa1330560 | 0.802781 | 4.767502e-49 | -8.615850e-47 |
| Msa0482200 | Msa1338570 | 0.800274 | 1.556351e-48 | -8.615850e-47 |
| Msa0482200 | Msa1341130 | 0.804820 | 1.798204e-49 | -8.615850e-47 |
| Msa0482200 | Msa1382140 | 0.861189 | 1.221874e-63 | -8.615850e-47 |
| Msa0482200 | Msa1444240 | 0.968054 | 3.909039e-128 | -8.615850e-47 |
| Msa0297630 | Msa0482200 | 0.845926 | 2.993320e-59 | -8.615850e-47 |
| Msa0342850 | Msa0482200 | 0.813104 | 3.030243e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482200 | MtrunA17_Chr4g0057761 | 98.664 | 524 | 6 | 1 | 1 | 523 | 1 | 524 | 0.0 | 1050 |
| Msa0482200 | MtrunA17_Chr4g0035431 | 43.243 | 407 | 216 | 4 | 3 | 408 | 1 | 393 | 4.49e-103 | 320 |
| Msa0482200 | MtrunA17_Chr5g0397481 | 42.892 | 408 | 216 | 5 | 3 | 408 | 1 | 393 | 1.40e-102 | 320 |
| Msa0482200 | MtrunA17_Chr7g0228641 | 27.273 | 220 | 152 | 2 | 192 | 409 | 117 | 330 | 3.20e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482200 | AT1G56110.1 | 78.899 | 436 | 92 | 0 | 1 | 436 | 1 | 436 | 0.0 | 749 |
| Msa0482200 | AT3G12860.1 | 79.909 | 438 | 88 | 0 | 1 | 438 | 1 | 438 | 0.0 | 743 |
| Msa0482200 | AT3G05060.1 | 43.578 | 436 | 232 | 7 | 3 | 437 | 2 | 424 | 4.92e-110 | 338 |
| Msa0482200 | AT5G27120.1 | 45.320 | 406 | 209 | 6 | 3 | 408 | 1 | 393 | 2.17e-109 | 336 |
| Msa0482200 | AT5G27140.2 | 40.385 | 364 | 205 | 4 | 96 | 456 | 57 | 411 | 2.83e-78 | 253 |
| Msa0482200 | AT5G27140.1 | 40.110 | 364 | 204 | 5 | 96 | 456 | 57 | 409 | 6.74e-76 | 246 |
| Msa0482200 | AT1G60170.1 | 25.850 | 147 | 109 | 0 | 273 | 419 | 194 | 340 | 4.58e-15 | 78.2 |
Find 115 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCATTCGGCCTTTGTTTC+TGG | 0.131146 | 3_3:+88633963 | None:intergenic |
| GTTCTTGATCTGATTCTTAT+TGG | 0.163993 | 3_3:-88632946 | Msa0482200:three_prime_UTR |
| TCTTCAACTCTTCAGATTCT+TGG | 0.176244 | 3_3:-88634250 | Msa0482200:CDS |
| CCAACTAGCGACTGCAAATT+TGG | 0.193971 | 3_3:+88634337 | None:intergenic |
| CTTTCAAGAGCAGAGGTAAA+AGG | 0.230717 | 3_3:+88636180 | None:intergenic |
| TTCTTACCTTCCTTAACTTT+AGG | 0.280668 | 3_3:+88635419 | None:intergenic |
| TTTACAATCTTCACAAGTTC+AGG | 0.281626 | 3_3:+88634702 | None:intergenic |
| TAAATAAATTGAAGCCAAAC+AGG | 0.337768 | 3_3:+88636406 | None:intergenic |
| TGTAAACCGGGTTGACAATA+TGG | 0.341142 | 3_3:-88635079 | Msa0482200:CDS |
| CGATGAGCTGAGGACTGTTT+TGG | 0.344431 | 3_3:-88635453 | Msa0482200:CDS |
| AATTCAATAGCAAGGTGATT+TGG | 0.344786 | 3_3:-88635157 | Msa0482200:intron |
| GAAAAGGGTACTTCAGCATT+TGG | 0.369631 | 3_3:-88633806 | Msa0482200:CDS |
| TGATGGACCTATCTGATTAC+AGG | 0.375490 | 3_3:-88634405 | Msa0482200:CDS |
| TGGAATATAAGACCATATTT+AGG | 0.383737 | 3_3:+88634012 | None:intergenic |
| CCTAGAAATGTGTCGGGAAA+AGG | 0.385145 | 3_3:+88636379 | None:intergenic |
| TATTATACCCATTGACGCTT+TGG | 0.385876 | 3_3:+88634551 | None:intergenic |
| AAAGAAAGAGAAGAGAAAGT+TGG | 0.395833 | 3_3:-88633277 | Msa0482200:CDS |
| GGATCAGGAGGATGAAGTTC+AGG | 0.398273 | 3_3:-88633256 | Msa0482200:CDS |
| GTGCAGAGAAGGCTTTGTTC+AGG | 0.401730 | 3_3:-88634228 | Msa0482200:intron |
| TCACTCTTTGTGCAAACATA+TGG | 0.406698 | 3_3:+88634425 | None:intergenic |
| CCTTCTCGATACACTTGATA+AGG | 0.408230 | 3_3:-88635040 | Msa0482200:CDS |
| AGGTTAAGTTCAATGTAAAC+CGG | 0.411525 | 3_3:-88635092 | Msa0482200:CDS |
| AGAAAGAGTGCCATTGTTGA+TGG | 0.413093 | 3_3:+88636342 | None:intergenic |
| CGCACACAAACTCGTTACTT+TGG | 0.414058 | 3_3:+88635324 | None:intergenic |
| CTAGAAATGTGTCGGGAAAA+GGG | 0.418654 | 3_3:+88636380 | None:intergenic |
| ATCGCCTACCAAGTCAGTTA+AGG | 0.423686 | 3_3:+88634605 | None:intergenic |
| AGAGAAGAGAAAGTTGGATC+AGG | 0.424350 | 3_3:-88633271 | Msa0482200:CDS |
| TGTGCAGAGAGTGGTATTCA+TGG | 0.424908 | 3_3:-88634731 | Msa0482200:intron |
| TGCAACATGACAAATATAAC+AGG | 0.428130 | 3_3:+88633132 | None:intergenic |
| GTTACCGATTTGAGCCGCTT+CGG | 0.428648 | 3_3:-88636231 | Msa0482200:CDS |
| AACTGTTGCAGATACAGAAA+TGG | 0.437507 | 3_3:-88633436 | Msa0482200:intron |
| CAAAGTTGCAAAATTTATTG+AGG | 0.438799 | 3_3:-88634661 | Msa0482200:CDS |
| GCTCATGGAATCGACGAAAT+CGG | 0.440318 | 3_3:-88636282 | Msa0482200:CDS |
| GCTATTGAAAGTGTTGATAA+AGG | 0.448681 | 3_3:-88633695 | Msa0482200:intron |
| TTGATCTGATTCTTATTGGA+AGG | 0.448708 | 3_3:-88632942 | Msa0482200:three_prime_UTR |
| TTTCAAGAGCAGAGGTAAAA+GGG | 0.450795 | 3_3:+88636181 | None:intergenic |
| CTTCTCCACGAAACTGCTCT+TGG | 0.451567 | 3_3:-88636321 | Msa0482200:CDS |
| AGAGGCAACACTCCTAAATA+TGG | 0.455113 | 3_3:-88634024 | Msa0482200:CDS |
| CCAAATTTGCAGTCGCTAGT+TGG | 0.461168 | 3_3:-88634337 | Msa0482200:CDS |
| AGAAGCCGCCAAAGCGTCAA+TGG | 0.463280 | 3_3:-88634559 | Msa0482200:CDS |
| ATTCATTCGCCATGAGAGTC+AGG | 0.465984 | 3_3:-88635011 | Msa0482200:intron |
| GACTAACTTACCTAAAGTTA+AGG | 0.466664 | 3_3:-88635429 | Msa0482200:CDS |
| GCGAACTTATTCGTGGTGTC+AGG | 0.471160 | 3_3:-88635304 | Msa0482200:CDS |
| TATTGAGGATAAGTCTAAGT+TGG | 0.472777 | 3_3:-88634646 | Msa0482200:CDS |
| TTTACCGAAGCGGCTCAAAT+CGG | 0.474756 | 3_3:+88636227 | None:intergenic |
| TTCTTATTGGAAGGTTGAAA+CGG | 0.477648 | 3_3:-88632933 | Msa0482200:three_prime_UTR |
| GGAGGATGAAGTTCAGGATA+AGG | 0.480853 | 3_3:-88633250 | Msa0482200:CDS |
| CTTCTTGCTTGAATCAGCGT+TGG | 0.485532 | 3_3:+88633212 | None:intergenic |
| ACAAACTCGTTACTTTGGAC+TGG | 0.486068 | 3_3:+88635329 | None:intergenic |
| TATGCCTTGTTCGAAGCTCA+TGG | 0.487581 | 3_3:-88636297 | Msa0482200:CDS |
| AAGAAGGCAAAGTTCAGCTT+AGG | 0.488720 | 3_3:-88635401 | Msa0482200:CDS |
| GAAGAGAAAGTTGGATCAGG+AGG | 0.491231 | 3_3:-88633268 | Msa0482200:CDS |
| TCAGATTCTTGGTGCAGAGA+AGG | 0.492010 | 3_3:-88634239 | Msa0482200:CDS |
| TATACCCATTGACGCTTTGG+CGG | 0.501050 | 3_3:+88634554 | None:intergenic |
| CAGGATAAGGTTGTAGATGA+TGG | 0.505235 | 3_3:-88633237 | Msa0482200:CDS |
| TAAAGTTAAGGAAGGTAAGA+AGG | 0.510060 | 3_3:-88635417 | Msa0482200:CDS |
| AAGAATCTGAAGAGTTGAAG+AGG | 0.512414 | 3_3:+88634252 | None:intergenic |
| CAAATCAACGCCGTTTCTGA+AGG | 0.515356 | 3_3:-88636150 | Msa0482200:intron |
| CAAGTTTGTTGGTGATCTCA+AGG | 0.516645 | 3_3:-88635270 | Msa0482200:intron |
| CATAACCAAGAGCAGTTTCG+TGG | 0.523654 | 3_3:+88636316 | None:intergenic |
| GAGTTTATTACCTTCAGAAA+CGG | 0.525796 | 3_3:+88636140 | None:intergenic |
| ATCATGCCGGGAAACATGGC+AGG | 0.528958 | 3_3:+88632995 | None:intergenic |
| TTGCAAGATAGCGAGCCATT+CGG | 0.530118 | 3_3:+88633950 | None:intergenic |
| AATTGAAGCCTTAACTGACT+TGG | 0.536133 | 3_3:-88634613 | Msa0482200:CDS |
| GGATGCTGAATAAACTAGAA+TGG | 0.537664 | 3_3:-88633166 | Msa0482200:exon |
| AAGGCTGCAGAAATTACAAA+TGG | 0.539269 | 3_3:-88633336 | Msa0482200:CDS |
| TATAATCATGCCGGGAAACA+TGG | 0.540048 | 3_3:+88632991 | None:intergenic |
| TAAGATTATATAATCATGCC+GGG | 0.541060 | 3_3:+88632983 | None:intergenic |
| TTAAGATTATATAATCATGC+CGG | 0.544771 | 3_3:+88632982 | None:intergenic |
| CCTTAGCTCTGCTGTAACTG+TGG | 0.549456 | 3_3:+88635112 | None:intergenic |
| CCACAGTTACAGCAGAGCTA+AGG | 0.551161 | 3_3:-88635112 | Msa0482200:CDS |
| GAAGCCGCCAAAGCGTCAAT+GGG | 0.554490 | 3_3:-88634558 | Msa0482200:intron |
| TTCGAGACTTTCAAGAGCAG+AGG | 0.555968 | 3_3:+88636173 | None:intergenic |
| GAAAACCCTAGAAATGTGTC+GGG | 0.562501 | 3_3:+88636373 | None:intergenic |
| CGAAAACCCTAGAAATGTGT+CGG | 0.562517 | 3_3:+88636372 | None:intergenic |
| ACCTTCTCCTGTAATCAGAT+AGG | 0.563907 | 3_3:+88634398 | None:intergenic |
| GTCGCTCTTCAACTTGCTCA+CGG | 0.564026 | 3_3:+88633774 | None:intergenic |
| AGATGACATGGCTGTAGATA+AGG | 0.568881 | 3_3:-88633355 | Msa0482200:CDS |
| TTTGTGTGCGAACTTATTCG+TGG | 0.571147 | 3_3:-88635311 | Msa0482200:CDS |
| ACCTATCTGATTACAGGAGA+AGG | 0.571797 | 3_3:-88634399 | Msa0482200:CDS |
| AGAATCTGAAGAGTTGAAGA+GGG | 0.574880 | 3_3:+88634253 | None:intergenic |
| TGGACATTGATCAAGTCCAC+AGG | 0.578477 | 3_3:+88634445 | None:intergenic |
| GATTTGGAGAAGGCACAGCT+TGG | 0.583090 | 3_3:-88635141 | Msa0482200:CDS |
| CCTATAGTACCTGACTCTCA+TGG | 0.583501 | 3_3:+88635002 | None:intergenic |
| CAAAACAGTCCTCAGCTCAT+CGG | 0.583817 | 3_3:+88635454 | None:intergenic |
| GATTCCATGAGCTTCGAACA+AGG | 0.584519 | 3_3:+88636293 | None:intergenic |
| CTCGACCAATAAAAGAAGAG+TGG | 0.586538 | 3_3:+88633992 | None:intergenic |
| TGCCAGAAACAAAGGCCGAA+TGG | 0.597003 | 3_3:-88633965 | Msa0482200:CDS |
| ATAGCAAGGTGATTTGGAGA+AGG | 0.597287 | 3_3:-88635151 | Msa0482200:intron |
| ATTTGTGAGACTACCAGCAT+GGG | 0.598797 | 3_3:+88634288 | None:intergenic |
| TAGAAATGTGTCGGGAAAAG+GGG | 0.599372 | 3_3:+88636381 | None:intergenic |
| TCGCTAGTTGGTGATAGTGT+TGG | 0.600802 | 3_3:-88634325 | Msa0482200:CDS |
| GGTTAAGTTCAATGTAAACC+GGG | 0.602722 | 3_3:-88635091 | Msa0482200:CDS |
| AACTTACCTAAAGTTAAGGA+AGG | 0.604940 | 3_3:-88635425 | Msa0482200:CDS |
| TATGTTTGCACAAAGAGTGA+TGG | 0.605742 | 3_3:-88634422 | Msa0482200:CDS |
| CGAGCATCTGCCAGAAACAA+AGG | 0.606525 | 3_3:-88633973 | Msa0482200:CDS |
| GAAGCCTTAACTGACTTGGT+AGG | 0.607529 | 3_3:-88634609 | Msa0482200:CDS |
| GAATGACCATATTGTCAACC+CGG | 0.609844 | 3_3:+88635073 | None:intergenic |
| AGGACAAGATTTGTCCCCTG+TGG | 0.610718 | 3_3:-88634461 | Msa0482200:CDS |
| GGTGTAGCAGAGTCTAAGAT+CGG | 0.612323 | 3_3:-88635380 | Msa0482200:CDS |
| CCTTATCAAGTGTATCGAGA+AGG | 0.614254 | 3_3:+88635040 | None:intergenic |
| AATTACAAATGGTGATGCGG+AGG | 0.625035 | 3_3:-88633325 | Msa0482200:CDS |
| GCTTAACAACTTTACCGAAG+CGG | 0.627626 | 3_3:+88636217 | None:intergenic |
| TGACATCAATGTTCTTACGA+GGG | 0.630630 | 3_3:+88633726 | None:intergenic |
| AATTTGTGAGACTACCAGCA+TGG | 0.634495 | 3_3:+88634287 | None:intergenic |
| GCTCGTTTGATATCCCATGC+TGG | 0.639782 | 3_3:-88634301 | Msa0482200:CDS |
| GTATTATGACCGATGAGCTG+AGG | 0.640224 | 3_3:-88635463 | Msa0482200:CDS |
| AGCTGCAGATGGAGATGACA+TGG | 0.642008 | 3_3:-88633367 | Msa0482200:CDS |
| AGAAATTACAAATGGTGATG+CGG | 0.643384 | 3_3:-88633328 | Msa0482200:CDS |
| ATGACATCAATGTTCTTACG+AGG | 0.650333 | 3_3:+88633725 | None:intergenic |
| GACATCAATGTTCTTACGAG+GGG | 0.656258 | 3_3:+88633727 | None:intergenic |
| AGGCGATGAAGATAAAGCAA+AGG | 0.667446 | 3_3:-88634589 | Msa0482200:CDS |
| GGACATTGATCAAGTCCACA+GGG | 0.677216 | 3_3:+88634446 | None:intergenic |
| GAATCTGAAGAGTTGAAGAG+GGG | 0.696575 | 3_3:+88634254 | None:intergenic |
| GACATTGATCAAGTCCACAG+GGG | 0.785794 | 3_3:+88634447 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATGACTTTTTTCAA+TGG | - | chr3_3:88633496-88633515 | Msa0482200:intron | 15.0% |
| !!! | TTTTGAAGAAATATATATCT+TGG | - | chr3_3:88633550-88633569 | Msa0482200:intron | 15.0% |
| !! | TTTGAAGAAATATATATCTT+GGG | - | chr3_3:88633551-88633570 | Msa0482200:intron | 15.0% |
| !! | TTATAGGATTATTTATCTAT+TGG | - | chr3_3:88634509-88634528 | Msa0482200:intron | 15.0% |
| !! | TATGAATCTGTTATGTAATA+GGG | - | chr3_3:88633186-88633205 | Msa0482200:CDS | 20.0% |
| !!! | CAAGAAATAGATATTTGTTA+AGG | - | chr3_3:88633665-88633684 | Msa0482200:intron | 20.0% |
| !! | AAAAAAATACAGGTCAAAAT+GGG | + | chr3_3:88634079-88634098 | None:intergenic | 20.0% |
| !! | GAAAAGAAACAAAAAAATAC+AGG | + | chr3_3:88634089-88634108 | None:intergenic | 20.0% |
| !! | AAACCTAAAATTAAACATCA+AGG | + | chr3_3:88635084-88635103 | None:intergenic | 20.0% |
| !! | GATAGATAAAATTACTATAC+AGG | + | chr3_3:88635397-88635416 | None:intergenic | 20.0% |
| !! | TATAATTTATGTAGTGCATT+AGG | + | chr3_3:88635796-88635815 | None:intergenic | 20.0% |
| !! | GAAAAAGAAATCAAAAAAGA+AGG | - | chr3_3:88636087-88636106 | Msa0482200:intron | 20.0% |
| !! | TTAAGATTATATAATCATGC+CGG | + | chr3_3:88636295-88636314 | None:intergenic | 20.0% |
| ! | GTATGAATCTGTTATGTAAT+AGG | - | chr3_3:88633185-88633204 | Msa0482200:CDS | 25.0% |
| ! | ATGAATCTGTTATGTAATAG+GGG | - | chr3_3:88633187-88633206 | Msa0482200:CDS | 25.0% |
| ! | ATAGGGGTTATTTATTTAAC+TGG | - | chr3_3:88633203-88633222 | Msa0482200:CDS | 25.0% |
| ! | GTTATTTATTTAACTGGTAC+TGG | - | chr3_3:88633209-88633228 | Msa0482200:CDS | 25.0% |
| !! | AATGTTGTTTATGAAGCTTT+AGG | - | chr3_3:88633312-88633331 | Msa0482200:CDS | 25.0% |
| ! | TTTCAGCTAAAAAGATTATG+TGG | - | chr3_3:88633436-88633455 | Msa0482200:intron | 25.0% |
| !!! | AAAATCGACTCTAAAATGAA+AGG | + | chr3_3:88633595-88633614 | None:intergenic | 25.0% |
| !!! | TTATCACCTTTGTCATTTTT+GGG | + | chr3_3:88633637-88633656 | None:intergenic | 25.0% |
| !!! | ATTATCACCTTTGTCATTTT+TGG | + | chr3_3:88633638-88633657 | None:intergenic | 25.0% |
| !!! | CTTAAGTTGTTTTTGTTTGT+TGG | - | chr3_3:88633775-88633794 | Msa0482200:CDS | 25.0% |
| ! | CAAAAAAATACAGGTCAAAA+TGG | + | chr3_3:88634080-88634099 | None:intergenic | 25.0% |
| ! | CTTACTATGTTAACATCATA+TGG | - | chr3_3:88634453-88634472 | Msa0482200:CDS | 25.0% |
| ! | CAAAGTTGCAAAATTTATTG+AGG | - | chr3_3:88634613-88634632 | Msa0482200:CDS | 25.0% |
| !!! | TGTCCTTGATGTTTAATTTT+AGG | - | chr3_3:88635078-88635097 | Msa0482200:CDS | 25.0% |
| ! | TGGAATATAAGACCATATTT+AGG | + | chr3_3:88635265-88635284 | None:intergenic | 25.0% |
| !! | ATATTCCACTCTTCTTTTAT+TGG | - | chr3_3:88635277-88635296 | Msa0482200:CDS | 25.0% |
| !! | ATTTTCTCATAGCATGAATT+TGG | - | chr3_3:88635637-88635656 | Msa0482200:intron | 25.0% |
| !!! | TGACTTTTGTTTATTGCTTT+TGG | - | chr3_3:88636229-88636248 | Msa0482200:CDS | 25.0% |
| ! | TAAGATTATATAATCATGCC+GGG | + | chr3_3:88636294-88636313 | None:intergenic | 25.0% |
| !!! | ATTTCTAGGGTTTTCGTTTT+CGG | - | chr3_3:88632909-88632928 | Msa0482200:three_prime_UTR | 30.0% |
| GAGTTTATTACCTTCAGAAA+CGG | + | chr3_3:88633137-88633156 | None:intergenic | 30.0% | |
| !! | TTAGTTTGTTTCAGTATGCA+TGG | - | chr3_3:88633369-88633388 | Msa0482200:CDS | 30.0% |
| !! | CTCTAAAATGAAAGGCTATT+AGG | + | chr3_3:88633587-88633606 | None:intergenic | 30.0% |
| !!! | TCATTTTTGGGTGTTTGTTT+AGG | + | chr3_3:88633625-88633644 | None:intergenic | 30.0% |
| !! | TTTGATGTGCTTTGTTTGTT+TGG | - | chr3_3:88633696-88633715 | Msa0482200:CDS | 30.0% |
| ! | TTTCGATATGCTATGTTTTG+AGG | - | chr3_3:88633719-88633738 | Msa0482200:CDS | 30.0% |
| !! | TTCGATATGCTATGTTTTGA+GGG | - | chr3_3:88633720-88633739 | Msa0482200:CDS | 30.0% |
| !!! | AAGTTGTTTTTGTTTGTTGG+TGG | - | chr3_3:88633778-88633797 | Msa0482200:CDS | 30.0% |
| GACTAACTTACCTAAAGTTA+AGG | - | chr3_3:88633845-88633864 | Msa0482200:intron | 30.0% | |
| AACTTACCTAAAGTTAAGGA+AGG | - | chr3_3:88633849-88633868 | Msa0482200:intron | 30.0% | |
| TTCTTACCTTCCTTAACTTT+AGG | + | chr3_3:88633858-88633877 | None:intergenic | 30.0% | |
| TAAAGTTAAGGAAGGTAAGA+AGG | - | chr3_3:88633857-88633876 | Msa0482200:intron | 30.0% | |
| !! | CAACATTTTGACAAGTTTGT+TGG | - | chr3_3:88633993-88634012 | Msa0482200:CDS | 30.0% |
| TGCATTTGAATTCAATAGCA+AGG | - | chr3_3:88634109-88634128 | Msa0482200:intron | 30.0% | |
| AATTCAATAGCAAGGTGATT+TGG | - | chr3_3:88634117-88634136 | Msa0482200:intron | 30.0% | |
| AGGTTAAGTTCAATGTAAAC+CGG | - | chr3_3:88634182-88634201 | Msa0482200:intron | 30.0% | |
| TCAGAGAGCTATAAACTTAT+AGG | - | chr3_3:88634493-88634512 | Msa0482200:intron | 30.0% | |
| TTTACAATCTTCACAAGTTC+AGG | + | chr3_3:88634575-88634594 | None:intergenic | 30.0% | |
| TATTGAGGATAAGTCTAAGT+TGG | - | chr3_3:88634628-88634647 | Msa0482200:CDS | 30.0% | |
| !!! | TTTTTTTCATAGAAACGAGC+AGG | - | chr3_3:88635114-88635133 | Msa0482200:CDS | 30.0% |
| GACAAGTGACTGTTATTATT+GGG | - | chr3_3:88635167-88635186 | Msa0482200:intron | 30.0% | |
| !!! | TCTTTTTTCGTGCTTTATTC+AGG | - | chr3_3:88635215-88635234 | Msa0482200:intron | 30.0% |
| !!! | CTTTTTTCGTGCTTTATTCA+GGG | - | chr3_3:88635216-88635235 | Msa0482200:intron | 30.0% |
| !! | TCAAGAATAGATTGCTTTTC+CGG | - | chr3_3:88635364-88635383 | Msa0482200:CDS | 30.0% |
| TTACTATACAGGAAACAAAC+CGG | + | chr3_3:88635386-88635405 | None:intergenic | 30.0% | |
| ! | CGACTTGACTTTTATGATAA+GGG | - | chr3_3:88635519-88635538 | Msa0482200:intron | 30.0% |
| !! | GCTATTGAAAGTGTTGATAA+AGG | - | chr3_3:88635579-88635598 | Msa0482200:intron | 30.0% |
| !! | TTGAAAGTGTTGATAAAGGT+AGG | - | chr3_3:88635583-88635602 | Msa0482200:intron | 30.0% |
| !! | TGAAAGTGTTGATAAAGGTA+GGG | - | chr3_3:88635584-88635603 | Msa0482200:intron | 30.0% |
| CATATAGCATCACCAAAAAA+TGG | + | chr3_3:88635712-88635731 | None:intergenic | 30.0% | |
| !!! | CATTTTTTGGTGATGCTATA+TGG | - | chr3_3:88635710-88635729 | Msa0482200:intron | 30.0% |
| ! | AGAAATTACAAATGGTGATG+CGG | - | chr3_3:88635946-88635965 | Msa0482200:intron | 30.0% |
| AAAGAAAGAGAAGAGAAAGT+TGG | - | chr3_3:88635997-88636016 | Msa0482200:intron | 30.0% | |
| TGCAACATGACAAATATAAC+AGG | + | chr3_3:88636145-88636164 | None:intergenic | 30.0% | |
| GTTCTTGATCTGATTCTTAT+TGG | - | chr3_3:88636328-88636347 | Msa0482200:CDS | 30.0% | |
| TTGATCTGATTCTTATTGGA+AGG | - | chr3_3:88636332-88636351 | Msa0482200:CDS | 30.0% | |
| TTCTTATTGGAAGGTTGAAA+CGG | - | chr3_3:88636341-88636360 | Msa0482200:exon | 30.0% | |
| TTTCAAGAGCAGAGGTAAAA+GGG | + | chr3_3:88633096-88633115 | None:intergenic | 35.0% | |
| CAAACACCCAAAAATGACAA+AGG | - | chr3_3:88633628-88633647 | Msa0482200:intron | 35.0% | |
| ! | CTCAAGGTTGGCATTTATTT+TGG | - | chr3_3:88634020-88634039 | Msa0482200:CDS | 35.0% |
| CCAACAAGTAAAAACACAAG+AGG | + | chr3_3:88634046-88634065 | None:intergenic | 35.0% | |
| !! | CCTCTTGTGTTTTTACTTGT+TGG | - | chr3_3:88634043-88634062 | Msa0482200:intron | 35.0% |
| GGTTAAGTTCAATGTAAACC+GGG | - | chr3_3:88634183-88634202 | Msa0482200:intron | 35.0% | |
| ! | TAACATAGTAAGTGTTGCCT+GGG | + | chr3_3:88634445-88634464 | None:intergenic | 35.0% |
| ! | TTAACATAGTAAGTGTTGCC+TGG | + | chr3_3:88634446-88634465 | None:intergenic | 35.0% |
| ! | TATCAATTTTGTGCAGAGAG+TGG | - | chr3_3:88634534-88634553 | Msa0482200:intron | 35.0% |
| AATTGAAGCCTTAACTGACT+TGG | - | chr3_3:88634661-88634680 | Msa0482200:CDS | 35.0% | |
| TATTATACCCATTGACGCTT+TGG | + | chr3_3:88634726-88634745 | None:intergenic | 35.0% | |
| ! | TCCTTTGTCTCTCTATTTTC+AGG | - | chr3_3:88634793-88634812 | Msa0482200:intron | 35.0% |
| TCCTGAAAATAGAGAGACAA+AGG | + | chr3_3:88634797-88634816 | None:intergenic | 35.0% | |
| TCACTCTTTGTGCAAACATA+TGG | + | chr3_3:88634852-88634871 | None:intergenic | 35.0% | |
| TATGTTTGCACAAAGAGTGA+TGG | - | chr3_3:88634852-88634871 | Msa0482200:intron | 35.0% | |
| AGAATCTGAAGAGTTGAAGA+GGG | + | chr3_3:88635024-88635043 | None:intergenic | 35.0% | |
| AAGAATCTGAAGAGTTGAAG+AGG | + | chr3_3:88635025-88635044 | None:intergenic | 35.0% | |
| TCTTCAACTCTTCAGATTCT+TGG | - | chr3_3:88635024-88635043 | Msa0482200:CDS | 35.0% | |
| !!! | GAGAAACTGTTTGTTTTGTC+AGG | - | chr3_3:88635145-88635164 | Msa0482200:CDS | 35.0% |
| GGACAAGTGACTGTTATTAT+TGG | - | chr3_3:88635166-88635185 | Msa0482200:intron | 35.0% | |
| ! | GCGACTTGACTTTTATGATA+AGG | - | chr3_3:88635518-88635537 | Msa0482200:intron | 35.0% |
| TGACATCAATGTTCTTACGA+GGG | + | chr3_3:88635551-88635570 | None:intergenic | 35.0% | |
| ATGACATCAATGTTCTTACG+AGG | + | chr3_3:88635552-88635571 | None:intergenic | 35.0% | |
| CATGCTATGAGAAAATGAGA+TGG | + | chr3_3:88635633-88635652 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTGATGCTATATGG+TGG | - | chr3_3:88635713-88635732 | Msa0482200:intron | 35.0% |
| AACTGTTGCAGATACAGAAA+TGG | - | chr3_3:88635838-88635857 | Msa0482200:intron | 35.0% | |
| !! | CTTCTTCTTCTTGGTTTTCT+TGG | + | chr3_3:88635882-88635901 | None:intergenic | 35.0% |
| ! | AGCTTTTTGCTTCTTCTTCT+TGG | + | chr3_3:88635891-88635910 | None:intergenic | 35.0% |
| AAGGCTGCAGAAATTACAAA+TGG | - | chr3_3:88635938-88635957 | Msa0482200:intron | 35.0% | |
| GGATGCTGAATAAACTAGAA+TGG | - | chr3_3:88636108-88636127 | Msa0482200:intron | 35.0% | |
| TAGAAATGTGTCGGGAAAAG+GGG | + | chr3_3:88632896-88632915 | None:intergenic | 40.0% | |
| CTAGAAATGTGTCGGGAAAA+GGG | + | chr3_3:88632897-88632916 | None:intergenic | 40.0% | |
| ! | CTTTTCCCGACACATTTCTA+GGG | - | chr3_3:88632896-88632915 | Msa0482200:three_prime_UTR | 40.0% |
| GAAAACCCTAGAAATGTGTC+GGG | + | chr3_3:88632904-88632923 | None:intergenic | 40.0% | |
| CGAAAACCCTAGAAATGTGT+CGG | + | chr3_3:88632905-88632924 | None:intergenic | 40.0% | |
| !! | AGAAAGAGTGCCATTGTTGA+TGG | + | chr3_3:88632935-88632954 | None:intergenic | 40.0% |
| GCTTAACAACTTTACCGAAG+CGG | + | chr3_3:88633060-88633079 | None:intergenic | 40.0% | |
| CTTTCAAGAGCAGAGGTAAA+AGG | + | chr3_3:88633097-88633116 | None:intergenic | 40.0% | |
| AAGAAGGCAAAGTTCAGCTT+AGG | - | chr3_3:88633873-88633892 | Msa0482200:intron | 40.0% | |
| ! | ACAAACTCGTTACTTTGGAC+TGG | + | chr3_3:88633948-88633967 | None:intergenic | 40.0% |
| TTTGTGTGCGAACTTATTCG+TGG | - | chr3_3:88633963-88633982 | Msa0482200:CDS | 40.0% | |
| !! | CAAGTTTGTTGGTGATCTCA+AGG | - | chr3_3:88634004-88634023 | Msa0482200:CDS | 40.0% |
| !! | TTTGTTGGTGATCTCAAGGT+TGG | - | chr3_3:88634008-88634027 | Msa0482200:CDS | 40.0% |
| TACAGGTCAAAATGGGCAAA+GGG | + | chr3_3:88634072-88634091 | None:intergenic | 40.0% | |
| ATACAGGTCAAAATGGGCAA+AGG | + | chr3_3:88634073-88634092 | None:intergenic | 40.0% | |
| ! | ATAGCAAGGTGATTTGGAGA+AGG | - | chr3_3:88634123-88634142 | Msa0482200:intron | 40.0% |
| ! | TGTAAACCGGGTTGACAATA+TGG | - | chr3_3:88634195-88634214 | Msa0482200:intron | 40.0% |
| GAATGACCATATTGTCAACC+CGG | + | chr3_3:88634204-88634223 | None:intergenic | 40.0% | |
| CCTTATCAAGTGTATCGAGA+AGG | + | chr3_3:88634237-88634256 | None:intergenic | 40.0% | |
| CCTTCTCGATACACTTGATA+AGG | - | chr3_3:88634234-88634253 | Msa0482200:CDS | 40.0% | |
| AGGCGATGAAGATAAAGCAA+AGG | - | chr3_3:88634685-88634704 | Msa0482200:CDS | 40.0% | |
| ! | TGATGGACCTATCTGATTAC+AGG | - | chr3_3:88634869-88634888 | Msa0482200:intron | 40.0% |
| ACCTATCTGATTACAGGAGA+AGG | - | chr3_3:88634875-88634894 | Msa0482200:intron | 40.0% | |
| ACCTTCTCCTGTAATCAGAT+AGG | + | chr3_3:88634879-88634898 | None:intergenic | 40.0% | |
| ATTTGTGAGACTACCAGCAT+GGG | + | chr3_3:88634989-88635008 | None:intergenic | 40.0% | |
| AATTTGTGAGACTACCAGCA+TGG | + | chr3_3:88634990-88635009 | None:intergenic | 40.0% | |
| GAATCTGAAGAGTTGAAGAG+GGG | + | chr3_3:88635023-88635042 | None:intergenic | 40.0% | |
| ! | TTCAGGGCATTAAAAACGAG+AGG | - | chr3_3:88635232-88635251 | Msa0482200:intron | 40.0% |
| AGAGGCAACACTCCTAAATA+TGG | - | chr3_3:88635250-88635269 | Msa0482200:intron | 40.0% | |
| CTCGACCAATAAAAGAAGAG+TGG | + | chr3_3:88635285-88635304 | None:intergenic | 40.0% | |
| ! | TTTGGTGTGTTCTGCAGAAA+AGG | - | chr3_3:88635452-88635471 | Msa0482200:CDS | 40.0% |
| TTGGTGTGTTCTGCAGAAAA+GGG | - | chr3_3:88635453-88635472 | Msa0482200:CDS | 40.0% | |
| !! | GAAAAGGGTACTTCAGCATT+TGG | - | chr3_3:88635468-88635487 | Msa0482200:intron | 40.0% |
| GACATCAATGTTCTTACGAG+GGG | + | chr3_3:88635550-88635569 | None:intergenic | 40.0% | |
| GCTATGAGAAAATGAGATGG+AGG | + | chr3_3:88635630-88635649 | None:intergenic | 40.0% | |
| ! | TATTTCTGCCTGCTACTACA+TGG | - | chr3_3:88635677-88635696 | Msa0482200:intron | 40.0% |
| ATTTCTGCCTGCTACTACAT+GGG | - | chr3_3:88635678-88635697 | Msa0482200:intron | 40.0% | |
| !! | TGGGGGTCTTTTCCATTTTT+TGG | - | chr3_3:88635697-88635716 | Msa0482200:intron | 40.0% |
| AAGAAGCAAAAAGCTGCAGA+TGG | - | chr3_3:88635896-88635915 | Msa0482200:intron | 40.0% | |
| AGATGACATGGCTGTAGATA+AGG | - | chr3_3:88635919-88635938 | Msa0482200:intron | 40.0% | |
| ! | AATTACAAATGGTGATGCGG+AGG | - | chr3_3:88635949-88635968 | Msa0482200:intron | 40.0% |
| AGAGAAGAGAAAGTTGGATC+AGG | - | chr3_3:88636003-88636022 | Msa0482200:intron | 40.0% | |
| CAGGATAAGGTTGTAGATGA+TGG | - | chr3_3:88636037-88636056 | Msa0482200:intron | 40.0% | |
| TATAATCATGCCGGGAAACA+TGG | + | chr3_3:88636286-88636305 | None:intergenic | 40.0% | |
| CCTAGAAATGTGTCGGGAAA+AGG | + | chr3_3:88632898-88632917 | None:intergenic | 45.0% | |
| ! | CCTTTTCCCGACACATTTCT+AGG | - | chr3_3:88632895-88632914 | Msa0482200:three_prime_UTR | 45.0% |
| ! | TCGTTTTCGGCCATCAACAA+TGG | - | chr3_3:88632922-88632941 | Msa0482200:three_prime_UTR | 45.0% |
| CATAACCAAGAGCAGTTTCG+TGG | + | chr3_3:88632961-88632980 | None:intergenic | 45.0% | |
| ! | TATGCCTTGTTCGAAGCTCA+TGG | - | chr3_3:88632977-88632996 | Msa0482200:three_prime_UTR | 45.0% |
| GATTCCATGAGCTTCGAACA+AGG | + | chr3_3:88632984-88633003 | None:intergenic | 45.0% | |
| GCTCATGGAATCGACGAAAT+CGG | - | chr3_3:88632992-88633011 | Msa0482200:three_prime_UTR | 45.0% | |
| TTTACCGAAGCGGCTCAAAT+CGG | + | chr3_3:88633050-88633069 | None:intergenic | 45.0% | |
| TTCGAGACTTTCAAGAGCAG+AGG | + | chr3_3:88633104-88633123 | None:intergenic | 45.0% | |
| CAAATCAACGCCGTTTCTGA+AGG | - | chr3_3:88633124-88633143 | Msa0482200:three_prime_UTR | 45.0% | |
| !! | GTTTGTTGGTGGCGATGTAA+AGG | - | chr3_3:88633789-88633808 | Msa0482200:CDS | 45.0% |
| GTATTATGACCGATGAGCTG+AGG | - | chr3_3:88633811-88633830 | Msa0482200:intron | 45.0% | |
| CAAAACAGTCCTCAGCTCAT+CGG | + | chr3_3:88633823-88633842 | None:intergenic | 45.0% | |
| ! | GGTGTAGCAGAGTCTAAGAT+CGG | - | chr3_3:88633894-88633913 | Msa0482200:intron | 45.0% |
| CGCACACAAACTCGTTACTT+TGG | + | chr3_3:88633953-88633972 | None:intergenic | 45.0% | |
| ACAGGTCAAAATGGGCAAAG+GGG | + | chr3_3:88634071-88634090 | None:intergenic | 45.0% | |
| ATTCATTCGCCATGAGAGTC+AGG | - | chr3_3:88634263-88634282 | Msa0482200:CDS | 45.0% | |
| CCTATAGTACCTGACTCTCA+TGG | + | chr3_3:88634275-88634294 | None:intergenic | 45.0% | |
| CCATGAGAGTCAGGTACTAT+AGG | - | chr3_3:88634272-88634291 | Msa0482200:CDS | 45.0% | |
| !! | TTCACATCTGCTTTTGCGCA+TGG | - | chr3_3:88634347-88634366 | Msa0482200:CDS | 45.0% |
| ! | TGGTTTGTGTGTGTGTGTTG+GGG | + | chr3_3:88634381-88634400 | None:intergenic | 45.0% |
| ! | CTGGTTTGTGTGTGTGTGTT+GGG | + | chr3_3:88634382-88634401 | None:intergenic | 45.0% |
| CAACACACACACACAAACCA+GGG | - | chr3_3:88634381-88634400 | Msa0482200:CDS | 45.0% | |
| TGTGCAGAGAGTGGTATTCA+TGG | - | chr3_3:88634543-88634562 | Msa0482200:intron | 45.0% | |
| !! | GAAGCCTTAACTGACTTGGT+AGG | - | chr3_3:88634665-88634684 | Msa0482200:CDS | 45.0% |
| ATCGCCTACCAAGTCAGTTA+AGG | + | chr3_3:88634672-88634691 | None:intergenic | 45.0% | |
| TATACCCATTGACGCTTTGG+CGG | + | chr3_3:88634723-88634742 | None:intergenic | 45.0% | |
| GACATTGATCAAGTCCACAG+GGG | + | chr3_3:88634830-88634849 | None:intergenic | 45.0% | |
| GGACATTGATCAAGTCCACA+GGG | + | chr3_3:88634831-88634850 | None:intergenic | 45.0% | |
| TGGACATTGATCAAGTCCAC+AGG | + | chr3_3:88634832-88634851 | None:intergenic | 45.0% | |
| CCAACTAGCGACTGCAAATT+TGG | + | chr3_3:88634940-88634959 | None:intergenic | 45.0% | |
| CCAAATTTGCAGTCGCTAGT+TGG | - | chr3_3:88634937-88634956 | Msa0482200:intron | 45.0% | |
| !! | TCGCTAGTTGGTGATAGTGT+TGG | - | chr3_3:88634949-88634968 | Msa0482200:intron | 45.0% |
| ! | TCAGATTCTTGGTGCAGAGA+AGG | - | chr3_3:88635035-88635054 | Msa0482200:CDS | 45.0% |
| TTGCAAGATAGCGAGCCATT+CGG | + | chr3_3:88635327-88635346 | None:intergenic | 45.0% | |
| ! | GCGCATCTGAATCATGCTTT+TGG | - | chr3_3:88635434-88635453 | Msa0482200:CDS | 45.0% |
| GAAAATGAGATGGAGGCAGT+AGG | + | chr3_3:88635623-88635642 | None:intergenic | 45.0% | |
| TTTCTGCCTGCTACTACATG+GGG | - | chr3_3:88635679-88635698 | Msa0482200:intron | 45.0% | |
| GAAGAGAAAGTTGGATCAGG+AGG | - | chr3_3:88636006-88636025 | Msa0482200:intron | 45.0% | |
| GGAGGATGAAGTTCAGGATA+AGG | - | chr3_3:88636024-88636043 | Msa0482200:intron | 45.0% | |
| CTTCTTGCTTGAATCAGCGT+TGG | + | chr3_3:88636065-88636084 | None:intergenic | 45.0% | |
| ! | TTTTGTCCTGCCATGTTTCC+CGG | - | chr3_3:88636273-88636292 | Msa0482200:CDS | 45.0% |
| CTTCTCCACGAAACTGCTCT+TGG | - | chr3_3:88632953-88632972 | Msa0482200:three_prime_UTR | 50.0% | |
| !! | GTTACCGATTTGAGCCGCTT+CGG | - | chr3_3:88633043-88633062 | Msa0482200:three_prime_UTR | 50.0% |
| ! | CGATGAGCTGAGGACTGTTT+TGG | - | chr3_3:88633821-88633840 | Msa0482200:intron | 50.0% |
| GCGAACTTATTCGTGGTGTC+AGG | - | chr3_3:88633970-88633989 | Msa0482200:CDS | 50.0% | |
| ! | GATTTGGAGAAGGCACAGCT+TGG | - | chr3_3:88634133-88634152 | Msa0482200:intron | 50.0% |
| !! | CCTTAGCTCTGCTGTAACTG+TGG | + | chr3_3:88634165-88634184 | None:intergenic | 50.0% |
| CCACAGTTACAGCAGAGCTA+AGG | - | chr3_3:88634162-88634181 | Msa0482200:intron | 50.0% | |
| ! | TGCTTTTGCGCATGGTCTAC+TGG | - | chr3_3:88634355-88634374 | Msa0482200:CDS | 50.0% |
| ! | CCTGGTTTGTGTGTGTGTGT+TGG | + | chr3_3:88634383-88634402 | None:intergenic | 50.0% |
| CCAACACACACACACAAACC+AGG | - | chr3_3:88634380-88634399 | Msa0482200:CDS | 50.0% | |
| ACACACACAAACCAGGGAGT+GGG | - | chr3_3:88634387-88634406 | Msa0482200:CDS | 50.0% | |
| TATCACAATCTCCCACTCCC+TGG | + | chr3_3:88634401-88634420 | None:intergenic | 50.0% | |
| AGGACAAGATTTGTCCCCTG+TGG | - | chr3_3:88634813-88634832 | Msa0482200:intron | 50.0% | |
| GCTCGTTTGATATCCCATGC+TGG | - | chr3_3:88634973-88634992 | Msa0482200:intron | 50.0% | |
| !! | GTGCAGAGAAGGCTTTGTTC+AGG | - | chr3_3:88635046-88635065 | Msa0482200:CDS | 50.0% |
| CGAGCATCTGCCAGAAACAA+AGG | - | chr3_3:88635301-88635320 | Msa0482200:CDS | 50.0% | |
| TGCCAGAAACAAAGGCCGAA+TGG | - | chr3_3:88635309-88635328 | Msa0482200:CDS | 50.0% | |
| ! | AGCCATTCGGCCTTTGTTTC+TGG | + | chr3_3:88635314-88635333 | None:intergenic | 50.0% |
| TGATTCAGATGCGCAGCGTA+AGG | + | chr3_3:88635428-88635447 | None:intergenic | 50.0% | |
| ! | GTCGCTCTTCAACTTGCTCA+CGG | + | chr3_3:88635503-88635522 | None:intergenic | 50.0% |
| TGGAGGCAGTAGGTCTCATA+GGG | + | chr3_3:88635613-88635632 | None:intergenic | 50.0% | |
| ATGGAGGCAGTAGGTCTCAT+AGG | + | chr3_3:88635614-88635633 | None:intergenic | 50.0% | |
| TTCTGCCTGCTACTACATGG+GGG | - | chr3_3:88635680-88635699 | Msa0482200:intron | 50.0% | |
| AAAGACCCCCATGTAGTAGC+AGG | + | chr3_3:88635688-88635707 | None:intergenic | 50.0% | |
| AGCTGCAGATGGAGATGACA+TGG | - | chr3_3:88635907-88635926 | Msa0482200:intron | 50.0% | |
| GGATCAGGAGGATGAAGTTC+AGG | - | chr3_3:88636018-88636037 | Msa0482200:intron | 50.0% | |
| CACACACACAAACCAGGGAG+TGG | - | chr3_3:88634386-88634405 | Msa0482200:CDS | 55.0% | |
| GGGACACTTGTGTGCTTGAG+TGG | + | chr3_3:88634425-88634444 | None:intergenic | 55.0% | |
| CTCAAGCACACAAGTGTCCC+AGG | - | chr3_3:88634425-88634444 | Msa0482200:CDS | 55.0% | |
| ! | AGAAGCCGCCAAAGCGTCAA+TGG | - | chr3_3:88634715-88634734 | Msa0482200:CDS | 55.0% |
| ! | GAAGCCGCCAAAGCGTCAAT+GGG | - | chr3_3:88634716-88634735 | Msa0482200:CDS | 55.0% |
| ATCATGCCGGGAAACATGGC+AGG | + | chr3_3:88636282-88636301 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 88632871 | 88636425 | 88632871 | ID=Msa0482200;Name=Msa0482200 |
| chr3_3 | mRNA | 88632871 | 88636425 | 88632871 | ID=Msa0482200-mRNA-1;Parent=Msa0482200;Name=Msa0482200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=70|1|1|1|1|1|8|305|523 |
| chr3_3 | exon | 88632871 | 88633447 | 88632871 | ID=Msa0482200-mRNA-1:exon:25954;Parent=Msa0482200-mRNA-1 |
| chr3_3 | exon | 88633696 | 88633827 | 88633696 | ID=Msa0482200-mRNA-1:exon:25953;Parent=Msa0482200-mRNA-1 |
| chr3_3 | exon | 88633911 | 88634059 | 88633911 | ID=Msa0482200-mRNA-1:exon:25952;Parent=Msa0482200-mRNA-1 |
| chr3_3 | exon | 88634229 | 88634481 | 88634229 | ID=Msa0482200-mRNA-1:exon:25951;Parent=Msa0482200-mRNA-1 |
| chr3_3 | exon | 88634559 | 88634746 | 88634559 | ID=Msa0482200-mRNA-1:exon:25950;Parent=Msa0482200-mRNA-1 |
| chr3_3 | exon | 88635012 | 88635169 | 88635012 | ID=Msa0482200-mRNA-1:exon:25949;Parent=Msa0482200-mRNA-1 |
| chr3_3 | exon | 88635271 | 88635485 | 88635271 | ID=Msa0482200-mRNA-1:exon:25948;Parent=Msa0482200-mRNA-1 |
| chr3_3 | exon | 88636151 | 88636425 | 88636151 | ID=Msa0482200-mRNA-1:exon:25947;Parent=Msa0482200-mRNA-1 |
| chr3_3 | five_prime_UTR | 88636356 | 88636425 | 88636356 | ID=Msa0482200-mRNA-1:five_prime_utr;Parent=Msa0482200-mRNA-1 |
| chr3_3 | CDS | 88636151 | 88636355 | 88636151 | ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1 |
| chr3_3 | CDS | 88635271 | 88635485 | 88635271 | ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1 |
| chr3_3 | CDS | 88635012 | 88635169 | 88635012 | ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1 |
| chr3_3 | CDS | 88634559 | 88634746 | 88634559 | ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1 |
| chr3_3 | CDS | 88634229 | 88634481 | 88634229 | ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1 |
| chr3_3 | CDS | 88633911 | 88634059 | 88633911 | ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1 |
| chr3_3 | CDS | 88633696 | 88633827 | 88633696 | ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1 |
| chr3_3 | CDS | 88633176 | 88633447 | 88633176 | ID=Msa0482200-mRNA-1:cds;Parent=Msa0482200-mRNA-1 |
| chr3_3 | three_prime_UTR | 88632871 | 88633175 | 88632871 | ID=Msa0482200-mRNA-1:three_prime_utr;Parent=Msa0482200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
