Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444240 | sp|O00567|NOP56_HUMAN | 58.389 | 447 | 174 | 2 | 3 | 449 | 4 | 438 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444240 | B7FLU4 | 98.664 | 524 | 6 | 1 | 1 | 523 | 1 | 524 | 0.0 | 1050 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044890 | Msa1444240 | 0.842244 | 2.910773e-58 | -8.615850e-47 |
| Msa0068970 | Msa1444240 | 0.833452 | 5.291119e-56 | -8.615850e-47 |
| Msa1382140 | Msa1444240 | 0.860199 | 2.439543e-63 | -8.615850e-47 |
| Msa1418690 | Msa1444240 | 0.812404 | 4.313701e-51 | -8.615850e-47 |
| Msa1433590 | Msa1444240 | 0.821393 | 4.136087e-53 | -8.615850e-47 |
| Msa0648620 | Msa1444240 | 0.820029 | 8.512601e-53 | -8.615850e-47 |
| Msa0648670 | Msa1444240 | 0.804343 | 2.260513e-49 | -8.615850e-47 |
| Msa0659050 | Msa1444240 | 0.870795 | 1.113993e-66 | -8.615850e-47 |
| Msa0686660 | Msa1444240 | 0.827087 | 1.899021e-54 | -8.615850e-47 |
| Msa0687440 | Msa1444240 | 0.815650 | 8.294656e-52 | -8.615850e-47 |
| Msa0704980 | Msa1444240 | 0.845197 | 4.718354e-59 | -8.615850e-47 |
| Msa0728870 | Msa1444240 | 0.821250 | 4.462229e-53 | -8.615850e-47 |
| Msa0164770 | Msa1444240 | 0.865210 | 6.964701e-65 | -8.615850e-47 |
| Msa0188440 | Msa1444240 | 0.824143 | 9.467346e-54 | -8.615850e-47 |
| Msa0194770 | Msa1444240 | 0.854767 | 9.884601e-62 | -8.615850e-47 |
| Msa0231030 | Msa1444240 | 0.828185 | 1.034687e-54 | -8.615850e-47 |
| Msa0236650 | Msa1444240 | 0.853162 | 2.866415e-61 | -8.615850e-47 |
| Msa1225720 | Msa1444240 | 0.972936 | 1.383307e-135 | -8.615850e-47 |
| Msa1258390 | Msa1444240 | 0.972594 | 5.065961e-135 | -8.615850e-47 |
| Msa1330560 | Msa1444240 | 0.820630 | 6.197009e-53 | -8.615850e-47 |
| Msa1338570 | Msa1444240 | 0.806240 | 9.054965e-50 | -8.615850e-47 |
| Msa1341130 | Msa1444240 | 0.838828 | 2.280116e-57 | -8.615850e-47 |
| Msa0450710 | Msa1444240 | 0.808404 | 3.149081e-50 | -8.615850e-47 |
| Msa0482200 | Msa1444240 | 0.968054 | 3.909039e-128 | -8.615850e-47 |
| Msa1004780 | Msa1444240 | 0.817428 | 3.314968e-52 | -8.615850e-47 |
| Msa1012770 | Msa1444240 | 0.803127 | 4.043665e-49 | -8.615850e-47 |
| Msa1027640 | Msa1444240 | 0.820047 | 8.430792e-53 | -8.615850e-47 |
| Msa1037610 | Msa1444240 | 0.801468 | 8.876256e-49 | -8.615850e-47 |
| Msa1040160 | Msa1444240 | 0.804226 | 2.391111e-49 | -8.615850e-47 |
| Msa1066190 | Msa1444240 | 0.826730 | 2.311258e-54 | -8.615850e-47 |
| Msa1091290 | Msa1444240 | 0.818880 | 1.555919e-52 | -8.615850e-47 |
| Msa0270550 | Msa1444240 | 0.812100 | 5.023577e-51 | -8.615850e-47 |
| Msa0297630 | Msa1444240 | 0.840149 | 1.034882e-57 | -8.615850e-47 |
| Msa0342850 | Msa1444240 | 0.826995 | 1.997666e-54 | -8.615850e-47 |
| Msa1128120 | Msa1444240 | 0.813066 | 3.088624e-51 | -8.615850e-47 |
| Msa1136880 | Msa1444240 | 0.803620 | 3.195194e-49 | -8.615850e-47 |
| Msa1209850 | Msa1444240 | 0.843413 | 1.422495e-58 | -8.615850e-47 |
| Msa1211820 | Msa1444240 | 0.820691 | 5.999915e-53 | -8.615850e-47 |
| Msa1218110 | Msa1444240 | 0.842408 | 2.633740e-58 | -8.615850e-47 |
| Msa0485510 | Msa1444240 | 0.941695 | 2.657571e-101 | -8.615850e-47 |
| Msa0486070 | Msa1444240 | 0.854331 | 1.321711e-61 | -8.615850e-47 |
| Msa0550490 | Msa1444240 | 0.806899 | 6.574719e-50 | -8.615850e-47 |
| Msa0554210 | Msa1444240 | 0.830378 | 3.037847e-55 | -8.615850e-47 |
| Msa0557720 | Msa1444240 | 0.803683 | 3.100493e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444240 | MtrunA17_Chr4g0057761 | 98.664 | 524 | 6 | 1 | 1 | 523 | 1 | 524 | 0.0 | 1050 |
| Msa1444240 | MtrunA17_Chr4g0035431 | 43.243 | 407 | 216 | 4 | 3 | 408 | 1 | 393 | 4.49e-103 | 320 |
| Msa1444240 | MtrunA17_Chr5g0397481 | 42.892 | 408 | 216 | 5 | 3 | 408 | 1 | 393 | 1.40e-102 | 320 |
| Msa1444240 | MtrunA17_Chr7g0228641 | 27.273 | 220 | 152 | 2 | 192 | 409 | 117 | 330 | 3.20e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444240 | AT1G56110.1 | 78.899 | 436 | 92 | 0 | 1 | 436 | 1 | 436 | 0.0 | 749 |
| Msa1444240 | AT3G12860.1 | 79.909 | 438 | 88 | 0 | 1 | 438 | 1 | 438 | 0.0 | 743 |
| Msa1444240 | AT3G05060.1 | 43.578 | 436 | 232 | 7 | 3 | 437 | 2 | 424 | 4.92e-110 | 338 |
| Msa1444240 | AT5G27120.1 | 45.320 | 406 | 209 | 6 | 3 | 408 | 1 | 393 | 2.17e-109 | 336 |
| Msa1444240 | AT5G27140.2 | 40.385 | 364 | 205 | 4 | 96 | 456 | 57 | 411 | 2.83e-78 | 253 |
| Msa1444240 | AT5G27140.1 | 40.110 | 364 | 204 | 5 | 96 | 456 | 57 | 409 | 6.74e-76 | 246 |
| Msa1444240 | AT1G60170.1 | 25.850 | 147 | 109 | 0 | 273 | 419 | 194 | 340 | 4.58e-15 | 78.2 |
Find 117 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCATTCGGCCTTTGTTTC+TGG | 0.131146 | tig0030677:-5878 | None:intergenic |
| GTTCTTGATCTGATTCTTAT+TGG | 0.163993 | tig0030677:+6895 | Msa1444240:three_prime_UTR |
| CCTCACTCAGACACATTTCT+AGG | 0.170042 | tig0030677:+3460 | Msa1444240:five_prime_UTR |
| TCTTCAACTCTTCAGATTCT+TGG | 0.176244 | tig0030677:+5589 | Msa1444240:CDS |
| CCAACTAGCGACTGCAAATT+TGG | 0.193971 | tig0030677:-5502 | None:intergenic |
| CTTTCAAGAGCAGAGGTAAA+AGG | 0.230717 | tig0030677:-3659 | None:intergenic |
| TTCTTACCTTCCTTAACTTT+AGG | 0.280668 | tig0030677:-4420 | None:intergenic |
| TTTACAATCTTCACAAGTTC+AGG | 0.281626 | tig0030677:-5137 | None:intergenic |
| TAAATAAATTGAAGCCAAAC+AGG | 0.337768 | tig0030677:-3426 | None:intergenic |
| TGTAAACCGGGTTGACAATA+TGG | 0.341142 | tig0030677:+4759 | Msa1444240:CDS |
| CGATGAGCTGAGGACTGTTT+TGG | 0.344431 | tig0030677:+4386 | Msa1444240:CDS |
| AATTCAATAGCAAGGTGATT+TGG | 0.344786 | tig0030677:+4681 | Msa1444240:intron |
| GAAAAGGGTACTTCAGCATT+TGG | 0.369631 | tig0030677:+6035 | Msa1444240:intron |
| TGATGGACCTATCTGATTAC+AGG | 0.375490 | tig0030677:+5434 | Msa1444240:CDS |
| TGGAATATAAGACCATATTT+AGG | 0.383737 | tig0030677:-5829 | None:intergenic |
| TATTATACCCATTGACGCTT+TGG | 0.385876 | tig0030677:-5288 | None:intergenic |
| AAAGAAAGAGAAGAGAAAGT+TGG | 0.395833 | tig0030677:+6564 | Msa1444240:CDS |
| GGATCAGGAGGATGAAGTTC+AGG | 0.398273 | tig0030677:+6585 | Msa1444240:CDS |
| GTGCAGAGAAGGCTTTGTTC+AGG | 0.401730 | tig0030677:+5611 | Msa1444240:CDS |
| TCACTCTTTGTGCAAACATA+TGG | 0.406698 | tig0030677:-5414 | None:intergenic |
| TGTGTCTGAGTGAGGGAAAA+GGG | 0.407616 | tig0030677:-3452 | None:intergenic |
| CCTTCTCGATACACTTGATA+AGG | 0.408230 | tig0030677:+4798 | Msa1444240:CDS |
| AGGTTAAGTTCAATGTAAAC+CGG | 0.411525 | tig0030677:+4746 | Msa1444240:CDS |
| AGAAAGAGTGCCATTGTTGA+TGG | 0.413093 | tig0030677:-3497 | None:intergenic |
| CGCACACAAACTCGTTACTT+TGG | 0.414058 | tig0030677:-4515 | None:intergenic |
| ATCGCCTACCAAGTCAGTTA+AGG | 0.423686 | tig0030677:-5234 | None:intergenic |
| AGAGAAGAGAAAGTTGGATC+AGG | 0.424350 | tig0030677:+6570 | Msa1444240:CDS |
| TGTGCAGAGAGTGGTATTCA+TGG | 0.424908 | tig0030677:+5108 | Msa1444240:intron |
| TGCAACATGACAAATATAAC+AGG | 0.428130 | tig0030677:-6709 | None:intergenic |
| GTTACCGATTTGAGCCGCTT+CGG | 0.428648 | tig0030677:+3608 | Msa1444240:CDS |
| AACTGTTGCAGATACAGAAA+TGG | 0.437507 | tig0030677:+6405 | Msa1444240:intron |
| CAAAGTTGCAAAATTTATTG+AGG | 0.438799 | tig0030677:+5178 | Msa1444240:CDS |
| GCTCATGGAATCGACGAAAT+CGG | 0.440318 | tig0030677:+3557 | Msa1444240:CDS |
| GCTATTGAAAGTGTTGATAA+AGG | 0.448681 | tig0030677:+6146 | Msa1444240:CDS |
| TTGATCTGATTCTTATTGGA+AGG | 0.448708 | tig0030677:+6899 | Msa1444240:three_prime_UTR |
| TTTCAAGAGCAGAGGTAAAA+GGG | 0.450795 | tig0030677:-3658 | None:intergenic |
| CTTCTCCACGAAACTGCTCT+TGG | 0.451567 | tig0030677:+3518 | Msa1444240:CDS |
| AGAGGCAACACTCCTAAATA+TGG | 0.455113 | tig0030677:+5817 | Msa1444240:CDS |
| ATGTGTCTGAGTGAGGGAAA+AGG | 0.455712 | tig0030677:-3453 | None:intergenic |
| CCAAATTTGCAGTCGCTAGT+TGG | 0.461168 | tig0030677:+5502 | Msa1444240:CDS |
| AGAAGCCGCCAAAGCGTCAA+TGG | 0.463280 | tig0030677:+5280 | Msa1444240:CDS |
| ATTCATTCGCCATGAGAGTC+AGG | 0.465984 | tig0030677:+4827 | Msa1444240:CDS |
| GACTAACTTACCTAAAGTTA+AGG | 0.466664 | tig0030677:+4410 | Msa1444240:CDS |
| GCGAACTTATTCGTGGTGTC+AGG | 0.471160 | tig0030677:+4535 | Msa1444240:CDS |
| CTCACTCAGACACATTTCTA+GGG | 0.472261 | tig0030677:+3461 | Msa1444240:five_prime_UTR |
| TATTGAGGATAAGTCTAAGT+TGG | 0.472777 | tig0030677:+5193 | Msa1444240:CDS |
| TTTACCGAAGCGGCTCAAAT+CGG | 0.474756 | tig0030677:-3612 | None:intergenic |
| TTCTTATTGGAAGGTTGAAA+CGG | 0.477648 | tig0030677:+6908 | Msa1444240:three_prime_UTR |
| GGAGGATGAAGTTCAGGATA+AGG | 0.480853 | tig0030677:+6591 | Msa1444240:CDS |
| CTTCTTGCTTGAATCAGCGT+TGG | 0.485532 | tig0030677:-6629 | None:intergenic |
| ACAAACTCGTTACTTTGGAC+TGG | 0.486068 | tig0030677:-4510 | None:intergenic |
| TATGCCTTGTTCGAAGCTCA+TGG | 0.487581 | tig0030677:+3542 | Msa1444240:CDS |
| AAGAAGGCAAAGTTCAGCTT+AGG | 0.488720 | tig0030677:+4438 | Msa1444240:CDS |
| GAAGAGAAAGTTGGATCAGG+AGG | 0.491231 | tig0030677:+6573 | Msa1444240:CDS |
| TCAGATTCTTGGTGCAGAGA+AGG | 0.492010 | tig0030677:+5600 | Msa1444240:CDS |
| TATACCCATTGACGCTTTGG+CGG | 0.501050 | tig0030677:-5285 | None:intergenic |
| TTAAGATTATATAATCATGC+TGG | 0.504921 | tig0030677:-6859 | None:intergenic |
| CAGGATAAGGTTGTAGATGA+TGG | 0.505235 | tig0030677:+6604 | Msa1444240:CDS |
| TAAAGTTAAGGAAGGTAAGA+AGG | 0.510060 | tig0030677:+4422 | Msa1444240:CDS |
| AAGAATCTGAAGAGTTGAAG+AGG | 0.512414 | tig0030677:-5587 | None:intergenic |
| CAAATCAACGCCGTTTCTGA+AGG | 0.515356 | tig0030677:+3689 | Msa1444240:CDS |
| CAAGTTTGTTGGTGATCTCA+AGG | 0.516645 | tig0030677:+4569 | Msa1444240:CDS |
| TATAATCATGCTGGGAAACA+TGG | 0.517166 | tig0030677:-6850 | None:intergenic |
| CATAACCAAGAGCAGTTTCG+TGG | 0.523654 | tig0030677:-3523 | None:intergenic |
| GAGTTTATTACCTTCAGAAA+CGG | 0.525796 | tig0030677:-3699 | None:intergenic |
| ATCATGCTGGGAAACATGGC+AGG | 0.526519 | tig0030677:-6846 | None:intergenic |
| TTGCAAGATAGCGAGCCATT+CGG | 0.530118 | tig0030677:-5891 | None:intergenic |
| AATTGAAGCCTTAACTGACT+TGG | 0.536133 | tig0030677:+5226 | Msa1444240:CDS |
| GGATGCTGAATAAACTAGAA+TGG | 0.537664 | tig0030677:+6675 | Msa1444240:exon |
| AAGGCTGCAGAAATTACAAA+TGG | 0.539269 | tig0030677:+6505 | Msa1444240:CDS |
| CCTTAGCTCTGCTGTAACTG+TGG | 0.549456 | tig0030677:-4726 | None:intergenic |
| CCACAGTTACAGCAGAGCTA+AGG | 0.551161 | tig0030677:+4726 | Msa1444240:CDS |
| GAAGCCGCCAAAGCGTCAAT+GGG | 0.554490 | tig0030677:+5281 | Msa1444240:CDS |
| TAAGATTATATAATCATGCT+GGG | 0.555499 | tig0030677:-6858 | None:intergenic |
| TTCGAGACTTTCAAGAGCAG+AGG | 0.555968 | tig0030677:-3666 | None:intergenic |
| ACCTTCTCCTGTAATCAGAT+AGG | 0.563907 | tig0030677:-5441 | None:intergenic |
| GTCGCTCTTCAACTTGCTCA+CGG | 0.564026 | tig0030677:-6067 | None:intergenic |
| GTGTCTGAGTGAGGGAAAAG+GGG | 0.568684 | tig0030677:-3451 | None:intergenic |
| AGATGACATGGCTGTAGATA+AGG | 0.568881 | tig0030677:+6486 | Msa1444240:CDS |
| TTTGTGTGCGAACTTATTCG+TGG | 0.571147 | tig0030677:+4528 | Msa1444240:CDS |
| ACCTATCTGATTACAGGAGA+AGG | 0.571797 | tig0030677:+5440 | Msa1444240:CDS |
| AGAATCTGAAGAGTTGAAGA+GGG | 0.574880 | tig0030677:-5586 | None:intergenic |
| CCTAGAAATGTGTCTGAGTG+AGG | 0.576303 | tig0030677:-3460 | None:intergenic |
| TGGACATTGATCAAGTCCAC+AGG | 0.578477 | tig0030677:-5394 | None:intergenic |
| GATTTGGAGAAGGCACAGCT+TGG | 0.583090 | tig0030677:+4697 | Msa1444240:CDS |
| CCTATAGTACCTGACTCTCA+TGG | 0.583501 | tig0030677:-4836 | None:intergenic |
| CAAAACAGTCCTCAGCTCAT+CGG | 0.583817 | tig0030677:-4385 | None:intergenic |
| GATTCCATGAGCTTCGAACA+AGG | 0.584519 | tig0030677:-3546 | None:intergenic |
| CTCGACCAATAAAAGAAGAG+TGG | 0.586538 | tig0030677:-5849 | None:intergenic |
| CTAGAAATGTGTCTGAGTGA+GGG | 0.593244 | tig0030677:-3459 | None:intergenic |
| TGCCAGAAACAAAGGCCGAA+TGG | 0.597003 | tig0030677:+5876 | Msa1444240:CDS |
| ATAGCAAGGTGATTTGGAGA+AGG | 0.597287 | tig0030677:+4687 | Msa1444240:intron |
| ATTTGTGAGACTACCAGCAT+GGG | 0.598797 | tig0030677:-5551 | None:intergenic |
| TCGCTAGTTGGTGATAGTGT+TGG | 0.600802 | tig0030677:+5514 | Msa1444240:CDS |
| GGTTAAGTTCAATGTAAACC+GGG | 0.602722 | tig0030677:+4747 | Msa1444240:CDS |
| AACTTACCTAAAGTTAAGGA+AGG | 0.604940 | tig0030677:+4414 | Msa1444240:CDS |
| TATGTTTGCACAAAGAGTGA+TGG | 0.605742 | tig0030677:+5417 | Msa1444240:CDS |
| CGAGCATCTGCCAGAAACAA+AGG | 0.606525 | tig0030677:+5868 | Msa1444240:CDS |
| GAAGCCTTAACTGACTTGGT+AGG | 0.607529 | tig0030677:+5230 | Msa1444240:CDS |
| GAATGACCATATTGTCAACC+CGG | 0.609844 | tig0030677:-4765 | None:intergenic |
| AGGACAAGATTTGTCCCCTG+TGG | 0.610718 | tig0030677:+5378 | Msa1444240:intron |
| GGTGTAGCAGAGTCTAAGAT+CGG | 0.612323 | tig0030677:+4459 | Msa1444240:CDS |
| CCTTATCAAGTGTATCGAGA+AGG | 0.614254 | tig0030677:-4798 | None:intergenic |
| AATTACAAATGGTGATGCGG+AGG | 0.625035 | tig0030677:+6516 | Msa1444240:CDS |
| GCTTAACAACTTTACCGAAG+CGG | 0.627626 | tig0030677:-3622 | None:intergenic |
| TGACATCAATGTTCTTACGA+GGG | 0.630630 | tig0030677:-6115 | None:intergenic |
| AATTTGTGAGACTACCAGCA+TGG | 0.634495 | tig0030677:-5552 | None:intergenic |
| GCTCGTTTGATATCCCATGC+TGG | 0.639782 | tig0030677:+5538 | Msa1444240:CDS |
| GTATTATGACCGATGAGCTG+AGG | 0.640224 | tig0030677:+4376 | Msa1444240:CDS |
| AGCTGCAGATGGAGATGACA+TGG | 0.642008 | tig0030677:+6474 | Msa1444240:CDS |
| AGAAATTACAAATGGTGATG+CGG | 0.643384 | tig0030677:+6513 | Msa1444240:CDS |
| ATGACATCAATGTTCTTACG+AGG | 0.650333 | tig0030677:-6116 | None:intergenic |
| GACATCAATGTTCTTACGAG+GGG | 0.656258 | tig0030677:-6114 | None:intergenic |
| AGGCGATGAAGATAAAGCAA+AGG | 0.667446 | tig0030677:+5250 | Msa1444240:CDS |
| GGACATTGATCAAGTCCACA+GGG | 0.677216 | tig0030677:-5393 | None:intergenic |
| GAATCTGAAGAGTTGAAGAG+GGG | 0.696575 | tig0030677:-5585 | None:intergenic |
| GACATTGATCAAGTCCACAG+GGG | 0.785794 | tig0030677:-5392 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATGACTTTTTTCAA+TGG | + | tig0030677:4061-4080 | Msa1444240:intron | 15.0% |
| !!! | TTTTGAAGAAATATATATCT+TGG | + | tig0030677:4115-4134 | Msa1444240:intron | 15.0% |
| !! | TTTGAAGAAATATATATCTT+GGG | + | tig0030677:4116-4135 | Msa1444240:intron | 15.0% |
| !! | TTATAGGATTATTTATCTAT+TGG | + | tig0030677:5074-5093 | Msa1444240:intron | 15.0% |
| !! | TATGAATCTGTTATGTAATA+GGG | + | tig0030677:3751-3770 | Msa1444240:intron | 20.0% |
| !!! | CAAGAAATAGATATTTGTTA+AGG | + | tig0030677:4230-4249 | Msa1444240:intron | 20.0% |
| !! | AAAAAAATACAGGTCAAAAT+GGG | - | tig0030677:4643-4662 | None:intergenic | 20.0% |
| !! | GAAAAGAAACAAAAAAATAC+AGG | - | tig0030677:4653-4672 | None:intergenic | 20.0% |
| !! | AAACCTAAAATTAAACATCA+AGG | - | tig0030677:5649-5668 | None:intergenic | 20.0% |
| !! | GATAGATAAAATTACTATAC+AGG | - | tig0030677:5964-5983 | None:intergenic | 20.0% |
| !! | TATAATTTATGTAGTGCATT+AGG | - | tig0030677:6363-6382 | None:intergenic | 20.0% |
| !! | GAAAAAGAAATCAAAAAAGA+AGG | + | tig0030677:6654-6673 | Msa1444240:CDS | 20.0% |
| !! | TAAGATTATATAATCATGCT+GGG | - | tig0030677:6861-6880 | None:intergenic | 20.0% |
| !! | TTAAGATTATATAATCATGC+TGG | - | tig0030677:6862-6881 | None:intergenic | 20.0% |
| ! | GTATGAATCTGTTATGTAAT+AGG | + | tig0030677:3750-3769 | Msa1444240:intron | 25.0% |
| ! | ATGAATCTGTTATGTAATAG+GGG | + | tig0030677:3752-3771 | Msa1444240:intron | 25.0% |
| ! | ATAGGGGTTATTTATTTAAC+TGG | + | tig0030677:3768-3787 | Msa1444240:intron | 25.0% |
| !! | AATGTTGTTTATGAAGCTTT+AGG | + | tig0030677:3877-3896 | Msa1444240:intron | 25.0% |
| ! | TTTCAGCTAAAAAGATTATG+TGG | + | tig0030677:4001-4020 | Msa1444240:intron | 25.0% |
| !!! | AAAATCGACTCTAAAATGAA+AGG | - | tig0030677:4160-4179 | None:intergenic | 25.0% |
| !!! | TTATCACCTTTGTCATTTTT+GGG | - | tig0030677:4202-4221 | None:intergenic | 25.0% |
| !!! | ATTATCACCTTTGTCATTTT+TGG | - | tig0030677:4203-4222 | None:intergenic | 25.0% |
| !!! | CTTAAGTTGTTTTTGTTTGT+TGG | + | tig0030677:4340-4359 | Msa1444240:intron | 25.0% |
| ! | CAAAAAAATACAGGTCAAAA+TGG | - | tig0030677:4644-4663 | None:intergenic | 25.0% |
| ! | CTTACTATGTTAACATCATA+TGG | + | tig0030677:5018-5037 | Msa1444240:intron | 25.0% |
| ! | CAAAGTTGCAAAATTTATTG+AGG | + | tig0030677:5178-5197 | Msa1444240:CDS | 25.0% |
| !!! | TGTCCTTGATGTTTAATTTT+AGG | + | tig0030677:5643-5662 | Msa1444240:intron | 25.0% |
| ! | TGGAATATAAGACCATATTT+AGG | - | tig0030677:5832-5851 | None:intergenic | 25.0% |
| !! | ATATTCCACTCTTCTTTTAT+TGG | + | tig0030677:5844-5863 | Msa1444240:CDS | 25.0% |
| !! | ATTTTCTCATAGCATGAATT+TGG | + | tig0030677:6204-6223 | Msa1444240:intron | 25.0% |
| !!! | TGACTTTTGTTTATTGCTTT+TGG | + | tig0030677:6796-6815 | Msa1444240:three_prime_UTR | 25.0% |
| !!! | ATTTCTAGGGTTTTCGTTTT+CGG | + | tig0030677:3474-3493 | Msa1444240:five_prime_UTR | 30.0% |
| GAGTTTATTACCTTCAGAAA+CGG | - | tig0030677:3702-3721 | None:intergenic | 30.0% | |
| !! | TTAGTTTGTTTCAGTATGCA+TGG | + | tig0030677:3934-3953 | Msa1444240:intron | 30.0% |
| !! | CTCTAAAATGAAAGGCTATT+AGG | - | tig0030677:4152-4171 | None:intergenic | 30.0% |
| !!! | TCATTTTTGGGTGTTTGTTT+AGG | - | tig0030677:4190-4209 | None:intergenic | 30.0% |
| !! | TTTGATGTGCTTTGTTTGTT+TGG | + | tig0030677:4261-4280 | Msa1444240:intron | 30.0% |
| ! | TTTCGATATGCTATGTTTTG+AGG | + | tig0030677:4284-4303 | Msa1444240:intron | 30.0% |
| !! | TTCGATATGCTATGTTTTGA+GGG | + | tig0030677:4285-4304 | Msa1444240:intron | 30.0% |
| !!! | AAGTTGTTTTTGTTTGTTGG+TGG | + | tig0030677:4343-4362 | Msa1444240:intron | 30.0% |
| GACTAACTTACCTAAAGTTA+AGG | + | tig0030677:4410-4429 | Msa1444240:CDS | 30.0% | |
| AACTTACCTAAAGTTAAGGA+AGG | + | tig0030677:4414-4433 | Msa1444240:CDS | 30.0% | |
| TTCTTACCTTCCTTAACTTT+AGG | - | tig0030677:4423-4442 | None:intergenic | 30.0% | |
| TAAAGTTAAGGAAGGTAAGA+AGG | + | tig0030677:4422-4441 | Msa1444240:CDS | 30.0% | |
| !! | CAACATTTTGACAAGTTTGT+TGG | + | tig0030677:4558-4577 | Msa1444240:CDS | 30.0% |
| TGCATTTGAATTCAATAGCA+AGG | + | tig0030677:4673-4692 | Msa1444240:intron | 30.0% | |
| AATTCAATAGCAAGGTGATT+TGG | + | tig0030677:4681-4700 | Msa1444240:intron | 30.0% | |
| AGGTTAAGTTCAATGTAAAC+CGG | + | tig0030677:4746-4765 | Msa1444240:CDS | 30.0% | |
| TCAGAGAGCTATAAACTTAT+AGG | + | tig0030677:5058-5077 | Msa1444240:intron | 30.0% | |
| TTTACAATCTTCACAAGTTC+AGG | - | tig0030677:5140-5159 | None:intergenic | 30.0% | |
| TATTGAGGATAAGTCTAAGT+TGG | + | tig0030677:5193-5212 | Msa1444240:CDS | 30.0% | |
| !!! | TTTTTTTCATAGAAACGAGC+AGG | + | tig0030677:5679-5698 | Msa1444240:intron | 30.0% |
| GACAAGTGACTGTTATTATT+GGG | + | tig0030677:5734-5753 | Msa1444240:intron | 30.0% | |
| !!! | TCTTTTTTCGTGCTTTATTC+AGG | + | tig0030677:5782-5801 | Msa1444240:intron | 30.0% |
| !!! | CTTTTTTCGTGCTTTATTCA+GGG | + | tig0030677:5783-5802 | Msa1444240:intron | 30.0% |
| !! | TCAAGAATAGATTGCTTTTC+CGG | + | tig0030677:5931-5950 | Msa1444240:CDS | 30.0% |
| TTACTATACAGGAAACAAAC+CGG | - | tig0030677:5953-5972 | None:intergenic | 30.0% | |
| ! | CGACTTGACTTTTATGATAA+GGG | + | tig0030677:6086-6105 | Msa1444240:CDS | 30.0% |
| !! | GCTATTGAAAGTGTTGATAA+AGG | + | tig0030677:6146-6165 | Msa1444240:CDS | 30.0% |
| !! | TTGAAAGTGTTGATAAAGGT+AGG | + | tig0030677:6150-6169 | Msa1444240:intron | 30.0% |
| !! | TGAAAGTGTTGATAAAGGTA+GGG | + | tig0030677:6151-6170 | Msa1444240:intron | 30.0% |
| CATATAGCATCACCAAAAAA+TGG | - | tig0030677:6279-6298 | None:intergenic | 30.0% | |
| !!! | CATTTTTTGGTGATGCTATA+TGG | + | tig0030677:6277-6296 | Msa1444240:intron | 30.0% |
| ! | AGAAATTACAAATGGTGATG+CGG | + | tig0030677:6513-6532 | Msa1444240:CDS | 30.0% |
| AAAGAAAGAGAAGAGAAAGT+TGG | + | tig0030677:6564-6583 | Msa1444240:CDS | 30.0% | |
| TGCAACATGACAAATATAAC+AGG | - | tig0030677:6712-6731 | None:intergenic | 30.0% | |
| GTTCTTGATCTGATTCTTAT+TGG | + | tig0030677:6895-6914 | Msa1444240:three_prime_UTR | 30.0% | |
| TTGATCTGATTCTTATTGGA+AGG | + | tig0030677:6899-6918 | Msa1444240:three_prime_UTR | 30.0% | |
| TTCTTATTGGAAGGTTGAAA+CGG | + | tig0030677:6908-6927 | Msa1444240:three_prime_UTR | 30.0% | |
| TTTCAAGAGCAGAGGTAAAA+GGG | - | tig0030677:3661-3680 | None:intergenic | 35.0% | |
| CAAACACCCAAAAATGACAA+AGG | + | tig0030677:4193-4212 | Msa1444240:intron | 35.0% | |
| ! | CTCAAGGTTGGCATTTATTT+TGG | + | tig0030677:4585-4604 | Msa1444240:intron | 35.0% |
| CCAACAAGTAAAAACACAAG+AGG | - | tig0030677:4611-4630 | None:intergenic | 35.0% | |
| !! | CCTCTTGTGTTTTTACTTGT+TGG | + | tig0030677:4608-4627 | Msa1444240:intron | 35.0% |
| GGTTAAGTTCAATGTAAACC+GGG | + | tig0030677:4747-4766 | Msa1444240:CDS | 35.0% | |
| ! | TAACATAGTAAGTGTTGCCT+GGG | - | tig0030677:5010-5029 | None:intergenic | 35.0% |
| ! | TTAACATAGTAAGTGTTGCC+TGG | - | tig0030677:5011-5030 | None:intergenic | 35.0% |
| ! | TATCAATTTTGTGCAGAGAG+TGG | + | tig0030677:5099-5118 | Msa1444240:intron | 35.0% |
| AATTGAAGCCTTAACTGACT+TGG | + | tig0030677:5226-5245 | Msa1444240:CDS | 35.0% | |
| TATTATACCCATTGACGCTT+TGG | - | tig0030677:5291-5310 | None:intergenic | 35.0% | |
| ! | TCCTTTGTCTCTCTATTTTC+AGG | + | tig0030677:5358-5377 | Msa1444240:intron | 35.0% |
| TCCTGAAAATAGAGAGACAA+AGG | - | tig0030677:5362-5381 | None:intergenic | 35.0% | |
| TCACTCTTTGTGCAAACATA+TGG | - | tig0030677:5417-5436 | None:intergenic | 35.0% | |
| TATGTTTGCACAAAGAGTGA+TGG | + | tig0030677:5417-5436 | Msa1444240:CDS | 35.0% | |
| AGAATCTGAAGAGTTGAAGA+GGG | - | tig0030677:5589-5608 | None:intergenic | 35.0% | |
| AAGAATCTGAAGAGTTGAAG+AGG | - | tig0030677:5590-5609 | None:intergenic | 35.0% | |
| TCTTCAACTCTTCAGATTCT+TGG | + | tig0030677:5589-5608 | Msa1444240:CDS | 35.0% | |
| ! | GAAACTGTTTGTGTTTTGTC+AGG | + | tig0030677:5712-5731 | Msa1444240:intron | 35.0% |
| GGACAAGTGACTGTTATTAT+TGG | + | tig0030677:5733-5752 | Msa1444240:intron | 35.0% | |
| ! | GCGACTTGACTTTTATGATA+AGG | + | tig0030677:6085-6104 | Msa1444240:CDS | 35.0% |
| TGACATCAATGTTCTTACGA+GGG | - | tig0030677:6118-6137 | None:intergenic | 35.0% | |
| ATGACATCAATGTTCTTACG+AGG | - | tig0030677:6119-6138 | None:intergenic | 35.0% | |
| CATGCTATGAGAAAATGAGA+TGG | - | tig0030677:6200-6219 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTGATGCTATATGG+TGG | + | tig0030677:6280-6299 | Msa1444240:intron | 35.0% |
| AACTGTTGCAGATACAGAAA+TGG | + | tig0030677:6405-6424 | Msa1444240:intron | 35.0% | |
| !! | CTTCTTCTTCTTGGTTTTCT+TGG | - | tig0030677:6449-6468 | None:intergenic | 35.0% |
| ! | AGCTTTTTGCTTCTTCTTCT+TGG | - | tig0030677:6458-6477 | None:intergenic | 35.0% |
| AAGGCTGCAGAAATTACAAA+TGG | + | tig0030677:6505-6524 | Msa1444240:CDS | 35.0% | |
| GGATGCTGAATAAACTAGAA+TGG | + | tig0030677:6675-6694 | Msa1444240:exon | 35.0% | |
| TATAATCATGCTGGGAAACA+TGG | - | tig0030677:6853-6872 | None:intergenic | 35.0% | |
| CTAGAAATGTGTCTGAGTGA+GGG | - | tig0030677:3462-3481 | None:intergenic | 40.0% | |
| CTCACTCAGACACATTTCTA+GGG | + | tig0030677:3461-3480 | Msa1444240:five_prime_UTR | 40.0% | |
| !! | AGAAAGAGTGCCATTGTTGA+TGG | - | tig0030677:3500-3519 | None:intergenic | 40.0% |
| GCTTAACAACTTTACCGAAG+CGG | - | tig0030677:3625-3644 | None:intergenic | 40.0% | |
| CTTTCAAGAGCAGAGGTAAA+AGG | - | tig0030677:3662-3681 | None:intergenic | 40.0% | |
| AAGAAGGCAAAGTTCAGCTT+AGG | + | tig0030677:4438-4457 | Msa1444240:CDS | 40.0% | |
| ! | ACAAACTCGTTACTTTGGAC+TGG | - | tig0030677:4513-4532 | None:intergenic | 40.0% |
| TTTGTGTGCGAACTTATTCG+TGG | + | tig0030677:4528-4547 | Msa1444240:CDS | 40.0% | |
| !! | CAAGTTTGTTGGTGATCTCA+AGG | + | tig0030677:4569-4588 | Msa1444240:CDS | 40.0% |
| !! | TTTGTTGGTGATCTCAAGGT+TGG | + | tig0030677:4573-4592 | Msa1444240:intron | 40.0% |
| TACAGGTCAAAATGGGCAAA+GGG | - | tig0030677:4636-4655 | None:intergenic | 40.0% | |
| ATACAGGTCAAAATGGGCAA+AGG | - | tig0030677:4637-4656 | None:intergenic | 40.0% | |
| ! | ATAGCAAGGTGATTTGGAGA+AGG | + | tig0030677:4687-4706 | Msa1444240:intron | 40.0% |
| ! | TGTAAACCGGGTTGACAATA+TGG | + | tig0030677:4759-4778 | Msa1444240:CDS | 40.0% |
| GAATGACCATATTGTCAACC+CGG | - | tig0030677:4768-4787 | None:intergenic | 40.0% | |
| CCTTATCAAGTGTATCGAGA+AGG | - | tig0030677:4801-4820 | None:intergenic | 40.0% | |
| CCTTCTCGATACACTTGATA+AGG | + | tig0030677:4798-4817 | Msa1444240:CDS | 40.0% | |
| AGGCGATGAAGATAAAGCAA+AGG | + | tig0030677:5250-5269 | Msa1444240:CDS | 40.0% | |
| ! | TGATGGACCTATCTGATTAC+AGG | + | tig0030677:5434-5453 | Msa1444240:CDS | 40.0% |
| ACCTATCTGATTACAGGAGA+AGG | + | tig0030677:5440-5459 | Msa1444240:CDS | 40.0% | |
| ACCTTCTCCTGTAATCAGAT+AGG | - | tig0030677:5444-5463 | None:intergenic | 40.0% | |
| ATTTGTGAGACTACCAGCAT+GGG | - | tig0030677:5554-5573 | None:intergenic | 40.0% | |
| AATTTGTGAGACTACCAGCA+TGG | - | tig0030677:5555-5574 | None:intergenic | 40.0% | |
| GAATCTGAAGAGTTGAAGAG+GGG | - | tig0030677:5588-5607 | None:intergenic | 40.0% | |
| ! | TTCAGGGCATTAAAAACGAG+AGG | + | tig0030677:5799-5818 | Msa1444240:intron | 40.0% |
| AGAGGCAACACTCCTAAATA+TGG | + | tig0030677:5817-5836 | Msa1444240:CDS | 40.0% | |
| CTCGACCAATAAAAGAAGAG+TGG | - | tig0030677:5852-5871 | None:intergenic | 40.0% | |
| ! | TTTGGTGTGTTCTGCAGAAA+AGG | + | tig0030677:6019-6038 | Msa1444240:intron | 40.0% |
| TTGGTGTGTTCTGCAGAAAA+GGG | + | tig0030677:6020-6039 | Msa1444240:intron | 40.0% | |
| !! | GAAAAGGGTACTTCAGCATT+TGG | + | tig0030677:6035-6054 | Msa1444240:intron | 40.0% |
| GACATCAATGTTCTTACGAG+GGG | - | tig0030677:6117-6136 | None:intergenic | 40.0% | |
| GCTATGAGAAAATGAGATGG+AGG | - | tig0030677:6197-6216 | None:intergenic | 40.0% | |
| ! | TATTTCTGCCTGCTACTACA+TGG | + | tig0030677:6244-6263 | Msa1444240:intron | 40.0% |
| ATTTCTGCCTGCTACTACAT+GGG | + | tig0030677:6245-6264 | Msa1444240:intron | 40.0% | |
| !! | TGGGGGTCTTTTCCATTTTT+TGG | + | tig0030677:6264-6283 | Msa1444240:intron | 40.0% |
| AAGAAGCAAAAAGCTGCAGA+TGG | + | tig0030677:6463-6482 | Msa1444240:CDS | 40.0% | |
| AGATGACATGGCTGTAGATA+AGG | + | tig0030677:6486-6505 | Msa1444240:CDS | 40.0% | |
| ! | AATTACAAATGGTGATGCGG+AGG | + | tig0030677:6516-6535 | Msa1444240:CDS | 40.0% |
| AGAGAAGAGAAAGTTGGATC+AGG | + | tig0030677:6570-6589 | Msa1444240:CDS | 40.0% | |
| CAGGATAAGGTTGTAGATGA+TGG | + | tig0030677:6604-6623 | Msa1444240:CDS | 40.0% | |
| TGTGTCTGAGTGAGGGAAAA+GGG | - | tig0030677:3455-3474 | None:intergenic | 45.0% | |
| ATGTGTCTGAGTGAGGGAAA+AGG | - | tig0030677:3456-3475 | None:intergenic | 45.0% | |
| CCTAGAAATGTGTCTGAGTG+AGG | - | tig0030677:3463-3482 | None:intergenic | 45.0% | |
| CCTCACTCAGACACATTTCT+AGG | + | tig0030677:3460-3479 | Msa1444240:five_prime_UTR | 45.0% | |
| ! | TCGTTTTCGGCCATCAACAA+TGG | + | tig0030677:3487-3506 | Msa1444240:exon | 45.0% |
| CATAACCAAGAGCAGTTTCG+TGG | - | tig0030677:3526-3545 | None:intergenic | 45.0% | |
| ! | TATGCCTTGTTCGAAGCTCA+TGG | + | tig0030677:3542-3561 | Msa1444240:CDS | 45.0% |
| GATTCCATGAGCTTCGAACA+AGG | - | tig0030677:3549-3568 | None:intergenic | 45.0% | |
| GCTCATGGAATCGACGAAAT+CGG | + | tig0030677:3557-3576 | Msa1444240:CDS | 45.0% | |
| TTTACCGAAGCGGCTCAAAT+CGG | - | tig0030677:3615-3634 | None:intergenic | 45.0% | |
| TTCGAGACTTTCAAGAGCAG+AGG | - | tig0030677:3669-3688 | None:intergenic | 45.0% | |
| CAAATCAACGCCGTTTCTGA+AGG | + | tig0030677:3689-3708 | Msa1444240:CDS | 45.0% | |
| !! | GTTTGTTGGTGGCGATGTAA+AGG | + | tig0030677:4354-4373 | Msa1444240:intron | 45.0% |
| GTATTATGACCGATGAGCTG+AGG | + | tig0030677:4376-4395 | Msa1444240:CDS | 45.0% | |
| CAAAACAGTCCTCAGCTCAT+CGG | - | tig0030677:4388-4407 | None:intergenic | 45.0% | |
| ! | GGTGTAGCAGAGTCTAAGAT+CGG | + | tig0030677:4459-4478 | Msa1444240:CDS | 45.0% |
| CGCACACAAACTCGTTACTT+TGG | - | tig0030677:4518-4537 | None:intergenic | 45.0% | |
| ATTCATTCGCCATGAGAGTC+AGG | + | tig0030677:4827-4846 | Msa1444240:CDS | 45.0% | |
| CCTATAGTACCTGACTCTCA+TGG | - | tig0030677:4839-4858 | None:intergenic | 45.0% | |
| CCATGAGAGTCAGGTACTAT+AGG | + | tig0030677:4836-4855 | Msa1444240:intron | 45.0% | |
| !! | TTCACATCTGCTTTTGCGCA+TGG | + | tig0030677:4911-4930 | Msa1444240:intron | 45.0% |
| ! | TGGTTTGTGTGTGTGTGTTG+GGG | - | tig0030677:4945-4964 | None:intergenic | 45.0% |
| ! | CTGGTTTGTGTGTGTGTGTT+GGG | - | tig0030677:4946-4965 | None:intergenic | 45.0% |
| CAACACACACACACAAACCA+GGG | + | tig0030677:4945-4964 | Msa1444240:intron | 45.0% | |
| TGTGCAGAGAGTGGTATTCA+TGG | + | tig0030677:5108-5127 | Msa1444240:intron | 45.0% | |
| !! | GAAGCCTTAACTGACTTGGT+AGG | + | tig0030677:5230-5249 | Msa1444240:CDS | 45.0% |
| ATCGCCTACCAAGTCAGTTA+AGG | - | tig0030677:5237-5256 | None:intergenic | 45.0% | |
| TATACCCATTGACGCTTTGG+CGG | - | tig0030677:5288-5307 | None:intergenic | 45.0% | |
| GACATTGATCAAGTCCACAG+GGG | - | tig0030677:5395-5414 | None:intergenic | 45.0% | |
| GGACATTGATCAAGTCCACA+GGG | - | tig0030677:5396-5415 | None:intergenic | 45.0% | |
| TGGACATTGATCAAGTCCAC+AGG | - | tig0030677:5397-5416 | None:intergenic | 45.0% | |
| CCAACTAGCGACTGCAAATT+TGG | - | tig0030677:5505-5524 | None:intergenic | 45.0% | |
| CCAAATTTGCAGTCGCTAGT+TGG | + | tig0030677:5502-5521 | Msa1444240:CDS | 45.0% | |
| !! | TCGCTAGTTGGTGATAGTGT+TGG | + | tig0030677:5514-5533 | Msa1444240:CDS | 45.0% |
| ! | TCAGATTCTTGGTGCAGAGA+AGG | + | tig0030677:5600-5619 | Msa1444240:CDS | 45.0% |
| TTGCAAGATAGCGAGCCATT+CGG | - | tig0030677:5894-5913 | None:intergenic | 45.0% | |
| ! | GCGCATCTGAATCATGCTTT+TGG | + | tig0030677:6001-6020 | Msa1444240:intron | 45.0% |
| GAAAATGAGATGGAGGCAGT+AGG | - | tig0030677:6190-6209 | None:intergenic | 45.0% | |
| TTTCTGCCTGCTACTACATG+GGG | + | tig0030677:6246-6265 | Msa1444240:intron | 45.0% | |
| GAAGAGAAAGTTGGATCAGG+AGG | + | tig0030677:6573-6592 | Msa1444240:CDS | 45.0% | |
| GGAGGATGAAGTTCAGGATA+AGG | + | tig0030677:6591-6610 | Msa1444240:CDS | 45.0% | |
| CTTCTTGCTTGAATCAGCGT+TGG | - | tig0030677:6632-6651 | None:intergenic | 45.0% | |
| GTGTCTGAGTGAGGGAAAAG+GGG | - | tig0030677:3454-3473 | None:intergenic | 50.0% | |
| CTTCTCCACGAAACTGCTCT+TGG | + | tig0030677:3518-3537 | Msa1444240:CDS | 50.0% | |
| !! | GTTACCGATTTGAGCCGCTT+CGG | + | tig0030677:3608-3627 | Msa1444240:CDS | 50.0% |
| ! | CGATGAGCTGAGGACTGTTT+TGG | + | tig0030677:4386-4405 | Msa1444240:CDS | 50.0% |
| GCGAACTTATTCGTGGTGTC+AGG | + | tig0030677:4535-4554 | Msa1444240:CDS | 50.0% | |
| ! | GATTTGGAGAAGGCACAGCT+TGG | + | tig0030677:4697-4716 | Msa1444240:CDS | 50.0% |
| !! | CCTTAGCTCTGCTGTAACTG+TGG | - | tig0030677:4729-4748 | None:intergenic | 50.0% |
| CCACAGTTACAGCAGAGCTA+AGG | + | tig0030677:4726-4745 | Msa1444240:CDS | 50.0% | |
| ! | TGCTTTTGCGCATGGTCTAC+TGG | + | tig0030677:4919-4938 | Msa1444240:intron | 50.0% |
| ! | CCTGGTTTGTGTGTGTGTGT+TGG | - | tig0030677:4947-4966 | None:intergenic | 50.0% |
| CCAACACACACACACAAACC+AGG | + | tig0030677:4944-4963 | Msa1444240:intron | 50.0% | |
| ACACACACAAACCAGGGAGT+GGG | + | tig0030677:4951-4970 | Msa1444240:intron | 50.0% | |
| AGGACAAGATTTGTCCCCTG+TGG | + | tig0030677:5378-5397 | Msa1444240:intron | 50.0% | |
| GCTCGTTTGATATCCCATGC+TGG | + | tig0030677:5538-5557 | Msa1444240:CDS | 50.0% | |
| !! | GTGCAGAGAAGGCTTTGTTC+AGG | + | tig0030677:5611-5630 | Msa1444240:CDS | 50.0% |
| CGAGCATCTGCCAGAAACAA+AGG | + | tig0030677:5868-5887 | Msa1444240:CDS | 50.0% | |
| TGCCAGAAACAAAGGCCGAA+TGG | + | tig0030677:5876-5895 | Msa1444240:CDS | 50.0% | |
| ! | AGCCATTCGGCCTTTGTTTC+TGG | - | tig0030677:5881-5900 | None:intergenic | 50.0% |
| TGATTCAGATGCGCAGCGTA+AGG | - | tig0030677:5995-6014 | None:intergenic | 50.0% | |
| ! | GTCGCTCTTCAACTTGCTCA+CGG | - | tig0030677:6070-6089 | None:intergenic | 50.0% |
| TGGAGGCAGTAGGTCTCATA+GGG | - | tig0030677:6180-6199 | None:intergenic | 50.0% | |
| ATGGAGGCAGTAGGTCTCAT+AGG | - | tig0030677:6181-6200 | None:intergenic | 50.0% | |
| TTCTGCCTGCTACTACATGG+GGG | + | tig0030677:6247-6266 | Msa1444240:intron | 50.0% | |
| AAAGACCCCCATGTAGTAGC+AGG | - | tig0030677:6255-6274 | None:intergenic | 50.0% | |
| AGCTGCAGATGGAGATGACA+TGG | + | tig0030677:6474-6493 | Msa1444240:CDS | 50.0% | |
| GGATCAGGAGGATGAAGTTC+AGG | + | tig0030677:6585-6604 | Msa1444240:CDS | 50.0% | |
| ATCATGCTGGGAAACATGGC+AGG | - | tig0030677:6849-6868 | None:intergenic | 50.0% | |
| CACACACACAAACCAGGGAG+TGG | + | tig0030677:4950-4969 | Msa1444240:intron | 55.0% | |
| CACACACAAACCAGGGAGTG+GGG | + | tig0030677:4952-4971 | Msa1444240:intron | 55.0% | |
| ATCACAATCTCCCCACTCCC+TGG | - | tig0030677:4965-4984 | None:intergenic | 55.0% | |
| GGGACACTTGTGTGCTTGAG+TGG | - | tig0030677:4990-5009 | None:intergenic | 55.0% | |
| CTCAAGCACACAAGTGTCCC+AGG | + | tig0030677:4990-5009 | Msa1444240:intron | 55.0% | |
| ! | AGAAGCCGCCAAAGCGTCAA+TGG | + | tig0030677:5280-5299 | Msa1444240:CDS | 55.0% |
| ! | GAAGCCGCCAAAGCGTCAAT+GGG | + | tig0030677:5281-5300 | Msa1444240:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030677 | gene | 3429 | 6993 | 3429 | ID=Msa1444240;Name=Msa1444240 |
| tig0030677 | mRNA | 3429 | 6993 | 3429 | ID=Msa1444240-mRNA-1;Parent=Msa1444240;Name=Msa1444240-mRNA-1;_AED=0.05;_eAED=0.05;_QI=77|1|1|1|1|1|8|306|523 |
| tig0030677 | exon | 3429 | 3710 | 3429 | ID=Msa1444240-mRNA-1:exon:14377;Parent=Msa1444240-mRNA-1 |
| tig0030677 | exon | 4376 | 4590 | 4376 | ID=Msa1444240-mRNA-1:exon:14378;Parent=Msa1444240-mRNA-1 |
| tig0030677 | exon | 4691 | 4848 | 4691 | ID=Msa1444240-mRNA-1:exon:14379;Parent=Msa1444240-mRNA-1 |
| tig0030677 | exon | 5115 | 5302 | 5115 | ID=Msa1444240-mRNA-1:exon:14380;Parent=Msa1444240-mRNA-1 |
| tig0030677 | exon | 5380 | 5632 | 5380 | ID=Msa1444240-mRNA-1:exon:14381;Parent=Msa1444240-mRNA-1 |
| tig0030677 | exon | 5804 | 5952 | 5804 | ID=Msa1444240-mRNA-1:exon:14382;Parent=Msa1444240-mRNA-1 |
| tig0030677 | exon | 6036 | 6167 | 6036 | ID=Msa1444240-mRNA-1:exon:14383;Parent=Msa1444240-mRNA-1 |
| tig0030677 | exon | 6416 | 6993 | 6416 | ID=Msa1444240-mRNA-1:exon:14384;Parent=Msa1444240-mRNA-1 |
| tig0030677 | five_prime_UTR | 3429 | 3505 | 3429 | ID=Msa1444240-mRNA-1:five_prime_utr;Parent=Msa1444240-mRNA-1 |
| tig0030677 | CDS | 3506 | 3710 | 3506 | ID=Msa1444240-mRNA-1:cds;Parent=Msa1444240-mRNA-1 |
| tig0030677 | CDS | 4376 | 4590 | 4376 | ID=Msa1444240-mRNA-1:cds;Parent=Msa1444240-mRNA-1 |
| tig0030677 | CDS | 4691 | 4848 | 4691 | ID=Msa1444240-mRNA-1:cds;Parent=Msa1444240-mRNA-1 |
| tig0030677 | CDS | 5115 | 5302 | 5115 | ID=Msa1444240-mRNA-1:cds;Parent=Msa1444240-mRNA-1 |
| tig0030677 | CDS | 5380 | 5632 | 5380 | ID=Msa1444240-mRNA-1:cds;Parent=Msa1444240-mRNA-1 |
| tig0030677 | CDS | 5804 | 5952 | 5804 | ID=Msa1444240-mRNA-1:cds;Parent=Msa1444240-mRNA-1 |
| tig0030677 | CDS | 6036 | 6167 | 6036 | ID=Msa1444240-mRNA-1:cds;Parent=Msa1444240-mRNA-1 |
| tig0030677 | CDS | 6416 | 6687 | 6416 | ID=Msa1444240-mRNA-1:cds;Parent=Msa1444240-mRNA-1 |
| tig0030677 | three_prime_UTR | 6688 | 6993 | 6688 | ID=Msa1444240-mRNA-1:three_prime_utr;Parent=Msa1444240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
