AlfalfaGEDB | Msa0236650

M. sativa cultivar zhongmu-4 / Msa0236650

KEGG: K03678
GO: GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000184 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070478 GO:0070481 GO:0070651 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354
PFAM: PF01138.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0236650	XP_003593906.1	96.437	449	16	0	1	449	1	449	0.0	899

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0236650	sp\|Q9M209\|CER7_ARATH	60.449	445	147	6	1	433	1	428	0.0	518

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0236650	G7IP72	96.437	449	16	0	1	449	1	449	0.0	899

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0164770	Msa0236650	0.827926	1.194064e-54	-8.615850e-47
Msa0194770	Msa0236650	0.926900	2.480664e-91	-8.615850e-47
Msa0236650	Msa0297630	0.891669	3.215290e-74	-8.615850e-47
Msa0236650	Msa0482200	0.859014	5.543519e-63	-8.615850e-47
Msa0236650	Msa0485510	0.861827	7.800063e-64	-8.615850e-47
Msa0236650	Msa0486070	0.808527	2.964482e-50	-8.615850e-47
Msa0236650	Msa0930490	0.821177	4.637274e-53	-8.615850e-47
Msa0236650	Msa1209850	0.806660	7.386253e-50	-8.615850e-47
Msa0236650	Msa1225720	0.867490	1.317047e-65	-8.615850e-47
Msa0236650	Msa1258390	0.865440	5.898274e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0236650	MtrunA17_Chr2g0285831	96.437	449	16	0	1	449	1	449	0.0	899
Msa0236650	MtrunA17_Chr1g0180521	90.816	294	27	0	1	294	1	294	0.0	569
Msa0236650	MtrunA17_Chr1g0160941	30.970	268	165	8	11	264	4	265	2.03e-29	116
Msa0236650	MtrunA17_Chr8g0373091	29.368	269	168	7	11	264	4	265	1.12e-26	108
Msa0236650	MtrunA17_Chr1g0146281	26.259	278	186	6	17	278	28	302	2.92e-22	96.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0236650	AT3G60500.3	60.449	445	147	6	1	433	1	428	0.0	518
Msa0236650	AT3G60500.2	60.449	445	147	6	1	433	1	428	0.0	518
Msa0236650	AT3G60500.1	60.449	445	147	6	1	433	1	428	0.0	518
Msa0236650	AT3G60500.4	63.969	383	117	5	1	377	1	368	3.22e-171	485
Msa0236650	AT3G12990.1	70.861	302	88	0	1	302	1	302	8.28e-159	451
Msa0236650	AT3G12990.3	70.861	302	88	0	1	302	1	302	8.28e-159	451
Msa0236650	AT3G12990.4	72.535	284	78	0	1	284	1	284	6.58e-151	430
Msa0236650	AT3G12990.2	75.234	214	53	0	1	214	1	214	1.97e-116	340
Msa0236650	AT3G07750.1	30.741	270	163	9	11	264	3	264	5.43e-28	112
Msa0236650	AT3G07750.2	30.741	270	163	9	11	264	3	264	5.43e-28	112

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Find 124 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTCCGATACAACAA+AGG	0.628612	2_2:+9582404	None:intergenic
AAACTTGCTCATGTTAAAGC+TGG	0.525982	2_2:-9580753	Msa0236650:CDS
AAAGCTTCTCTAGCTTCTCG+TGG	0.641908	2_2:-9579744	Msa0236650:intron
AACTCAACGGCAGATTCTCC+AGG	0.512885	2_2:+9581565	None:intergenic
AAGGCCTGAATGCTCGTTGG+GGG	0.582507	2_2:-9581259	Msa0236650:CDS
AATCCAAAGGTGACTGCAAC+TGG	0.344185	2_2:+9581071	None:intergenic
ACAAGTGCAGAGTAGCAAGA+AGG	0.616848	2_2:-9580118	Msa0236650:CDS
ACAGCCTCTTCATGGTATGT+CGG	0.618076	2_2:+9580882	None:intergenic
ACATACATCCACCGCAACAG+AGG	0.701182	2_2:+9580266	None:intergenic
ACATTCTTCCTCTGTTGCGG+TGG	0.540050	2_2:-9580274	Msa0236650:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCCCAAATTCAAAACTGAA+TGG	+	chr2_2:9578103-9578122	None:intergenic	30.0%
AATACACGCATTTGTACAAA+AGG	+	chr2_2:9578127-9578146	None:intergenic	30.0%
TGATAACAGTTTAGATTTGG+AGG	-	chr2_2:9578146-9578165	Msa0236650:CDS	30.0%
GATAACAGTTTAGATTTGGA+GGG	-	chr2_2:9578147-9578166	Msa0236650:CDS	30.0%
AGTTGAACATTAAATTTGGG+AGG	-	chr2_2:9578625-9578644	Msa0236650:intron	30.0%
GTTGAACATTAAATTTGGGA+GGG	-	chr2_2:9578626-9578645	Msa0236650:intron	30.0%
ATAGATAGTGTACCTTCATT+AGG	+	chr2_2:9578738-9578757	None:intergenic	30.0%
GGAAGATGATGTATAATCAA+AGG	+	chr2_2:9579283-9579302	None:intergenic	30.0%
TTCATTGCTGAAAAATCCAA+AGG	+	chr2_2:9579317-9579336	None:intergenic	30.0%
TTTCAGCAATGAAAATCTTG+TGG	-	chr2_2:9579324-9579343	Msa0236650:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	9577739	9582655	9577739	ID=Msa0236650;Name=Msa0236650
chr2_2	mRNA	9577739	9582655	9577739	ID=Msa0236650-mRNA-1;Parent=Msa0236650;Name=Msa0236650-mRNA-1;_AED=0.07;_eAED=0.07;_QI=139\|1\|1\|1\|0.75\|0.66\|9\|283\|449
chr2_2	exon	9577739	9578221	9577739	ID=Msa0236650-mRNA-1:exon:4164;Parent=Msa0236650-mRNA-1
chr2_2	exon	9579745	9579803	9579745	ID=Msa0236650-mRNA-1:exon:4163;Parent=Msa0236650-mRNA-1
chr2_2	exon	9580078	9580340	9580078	ID=Msa0236650-mRNA-1:exon:4162;Parent=Msa0236650-mRNA-1
chr2_2	exon	9580725	9580913	9580725	ID=Msa0236650-mRNA-1:exon:4161;Parent=Msa0236650-mRNA-1
chr2_2	exon	9581049	9581129	9581049	ID=Msa0236650-mRNA-1:exon:4160;Parent=Msa0236650-mRNA-1
chr2_2	exon	9581221	9581335	9581221	ID=Msa0236650-mRNA-1:exon:4159;Parent=Msa0236650-mRNA-1
chr2_2	exon	9581442	9581898	9581442	ID=Msa0236650-mRNA-1:exon:4158;Parent=Msa0236650-mRNA-1
chr2_2	exon	9582383	9582496	9582383	ID=Msa0236650-mRNA-1:exon:4157;Parent=Msa0236650-mRNA-1
chr2_2	exon	9582645	9582655	9582645	ID=Msa0236650-mRNA-1:exon:4156;Parent=Msa0236650-mRNA-1
chr2_2	five_prime_UTR	9582645	9582655	9582645	ID=Msa0236650-mRNA-1:five_prime_utr;Parent=Msa0236650-mRNA-1
chr2_2	five_prime_UTR	9582383	9582496	9582383	ID=Msa0236650-mRNA-1:five_prime_utr;Parent=Msa0236650-mRNA-1
chr2_2	five_prime_UTR	9581885	9581898	9581885	ID=Msa0236650-mRNA-1:five_prime_utr;Parent=Msa0236650-mRNA-1
chr2_2	CDS	9581442	9581884	9581442	ID=Msa0236650-mRNA-1:cds;Parent=Msa0236650-mRNA-1
chr2_2	CDS	9581221	9581335	9581221	ID=Msa0236650-mRNA-1:cds;Parent=Msa0236650-mRNA-1
chr2_2	CDS	9581049	9581129	9581049	ID=Msa0236650-mRNA-1:cds;Parent=Msa0236650-mRNA-1
chr2_2	CDS	9580725	9580913	9580725	ID=Msa0236650-mRNA-1:cds;Parent=Msa0236650-mRNA-1
chr2_2	CDS	9580078	9580340	9580078	ID=Msa0236650-mRNA-1:cds;Parent=Msa0236650-mRNA-1
chr2_2	CDS	9579745	9579803	9579745	ID=Msa0236650-mRNA-1:cds;Parent=Msa0236650-mRNA-1
chr2_2	CDS	9578022	9578221	9578022	ID=Msa0236650-mRNA-1:cds;Parent=Msa0236650-mRNA-1
chr2_2	three_prime_UTR	9577739	9578021	9577739	ID=Msa0236650-mRNA-1:three_prime_utr;Parent=Msa0236650-mRNA-1

Gene Sequence

>Msa0236650

ATGGAGCAGAGATTAGCTAATTGTTGGCGGTTGACAGTTAACGAAAAGAAATTCATTGAAACTGCTCTTCTATCAGAGCTTCGAGTGGATGGTCGGGGCCCCTTGGACTATCGCAAGTTGAACATTAAATTTGGGAGGGATGATGGGTCTGCCGAGATCCAATTGGGCGAGACACGTGTCATGAGTTTTGTGACTGCTCAACTTGTGCAGCCTTACAAAGATAGGCCTAATGAAGGTACACTATCTATCTTCACTGAATTCTCTCCCATGGCTGATCCTTCCTTTGAGCCTGGCCGTCCTGGAGAATCTGCCGTTGAGTTAGGACGCATTATAGACCGCGGTTTACGGGAAAGTAGAGCCATTGACACTGAATCGCTCTGCATTCTTTCTGCCAAACTTGTCTGGGCCATTCGCATTGACATCCACATACTAGACAATGCAGGAAATCTTGTTGATGCTGCAAATATTGCTGCATTGGCATCTCTGAAGACATTCAGAAGGCCTGAATGCTCGTTGGGGGGAGAGGATGGTCAACAAGTTGTAGTGCATCCTCCTGAGGTGCGCGAGCCACTCCCTTTGATTATACATCATCTTCCAGTTGCAGTCACCTTTGGATTTTTCAGCAATGAAAATCTTGTGGTATTGGATCCGACATACCATGAAGAGGCTGTAATGACTGGGCGCATGACTGCAACACTTAATGCAAATGGTGATGTGTGTGCAATTCAAAAGCCTGGGGGGCAGGGTGTCTTTCAACGAGTTATCATGCATTGCTTGAAACTTGCTCATGTTAAAGCTGGTGATATTACAGCCAAGATAAATGATGCAGTTGAAAAGCACAACAATGAAAGGGCACTACAGAAGATTAAACGACATTCTTCCTCTGTTGCGGTGGATGTATGTGGAACCACTGCCACGTTAGGGGGAAAACAAAATCAATCAGATGGTGATAAAGAAGGTAGTCATCTAGACCAGTTGAAGCTGAAAGGCGAGACAAATTTAATGGAATGTGATGCCACATCATTAGGACAAGTGCAGAGTAGCAAGAAGGATGGAAGCTCAAAGAATTTTATCGGTGGCCCCTCAAGCTGGGATCCCTACTCAGATTGTGTCAATTCAGATCTTCTAAAAGCTTCTCTAGCTTCTCGTGGACAATCAACTTCTAGTAAACAAAAGGATTCAAGACAGGAGACTAAGCCAGAAGAACCAGCGCAGGAAATCAAGACAGTTTCTGCACCAATTGACACTGCTCTAACTGCTGGGCAGAGTAATGAAGGTAAGACTCTGAAGGATGCTGTCAAGCCCAAGAACAAGAGGAAGAAAAAAACATCTTCCAATAATGGGAATTAA

Protein sequence

>Msa0236650

MEQRLANCWRLTVNEKKFIETALLSELRVDGRGPLDYRKLNIKFGRDDGSAEIQLGETRVMSFVTAQLVQPYKDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAIDTESLCILSAKLVWAIRIDIHILDNAGNLVDAANIAALASLKTFRRPECSLGGEDGQQVVVHPPEVREPLPLIIHHLPVAVTFGFFSNENLVVLDPTYHEEAVMTGRMTATLNANGDVCAIQKPGGQGVFQRVIMHCLKLAHVKAGDITAKINDAVEKHNNERALQKIKRHSSSVAVDVCGTTATLGGKQNQSDGDKEGSHLDQLKLKGETNLMECDATSLGQVQSSKKDGSSKNFIGGPSSWDPYSDCVNSDLLKASLASRGQSTSSKQKDSRQETKPEEPAQEIKTVSAPIDTALTAGQSNEGKTLKDAVKPKNKRKKKTSSNNGN*