AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0236650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236650 MtrunA17_Chr2g0285831 96.437 449 16 0 1 449 1 449 0.0 899
Msa0236650 MtrunA17_Chr1g0180521 90.816 294 27 0 1 294 1 294 0.0 569
Msa0236650 MtrunA17_Chr1g0160941 30.970 268 165 8 11 264 4 265 2.03e-29 116
Msa0236650 MtrunA17_Chr8g0373091 29.368 269 168 7 11 264 4 265 1.12e-26 108
Msa0236650 MtrunA17_Chr1g0146281 26.259 278 186 6 17 278 28 302 2.92e-22 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236650 AT3G60500.3 60.449 445 147 6 1 433 1 428 0.0 518
Msa0236650 AT3G60500.2 60.449 445 147 6 1 433 1 428 0.0 518
Msa0236650 AT3G60500.1 60.449 445 147 6 1 433 1 428 0.0 518
Msa0236650 AT3G60500.4 63.969 383 117 5 1 377 1 368 3.22e-171 485
Msa0236650 AT3G12990.1 70.861 302 88 0 1 302 1 302 8.28e-159 451
Msa0236650 AT3G12990.3 70.861 302 88 0 1 302 1 302 8.28e-159 451
Msa0236650 AT3G12990.4 72.535 284 78 0 1 284 1 284 6.58e-151 430
Msa0236650 AT3G12990.2 75.234 214 53 0 1 214 1 214 1.97e-116 340
Msa0236650 AT3G07750.1 30.741 270 163 9 11 264 3 264 5.43e-28 112
Msa0236650 AT3G07750.2 30.741 270 163 9 11 264 3 264 5.43e-28 112
Msa0236650 AT1G60080.1 28.253 269 175 5 17 269 26 292 6.36e-24 101

Find 124 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAAGTTGAACATTAAATT+TGG 0.095631 2_2:-9581751 Msa0236650:CDS
CATAACTTAATTCCCATTAT+TGG 0.197437 2_2:+9578016 None:intergenic
TTCTTTCTGCCAAACTTGTC+TGG 0.208475 2_2:-9581480 Msa0236650:CDS
ATTTCCTGCGCTGGTTCTTC+TGG 0.247600 2_2:+9578152 None:intergenic
TCCTTTGAGCCTGGCCGTCC+TGG 0.261790 2_2:-9581583 Msa0236650:CDS
CTTCCAGTTGCAGTCACCTT+TGG 0.284591 2_2:-9581074 Msa0236650:CDS
CATTATAGACCGCGGTTTAC+GGG 0.295153 2_2:-9581536 Msa0236650:CDS
GTATATTTGTTTGTTCATTT+AGG 0.315602 2_2:-9577898 Msa0236650:three_prime_UTR
CAAAATTGACAAAGCATGTT+TGG 0.315633 2_2:+9577777 None:intergenic
GAAAGGCGAGACAAATTTAA+TGG 0.327208 2_2:-9580163 Msa0236650:CDS
GCATTATAGACCGCGGTTTA+CGG 0.332870 2_2:-9581537 Msa0236650:CDS
TTTGGATTAATCATTACTTT+TGG 0.343972 2_2:+9577751 None:intergenic
AATCCAAAGGTGACTGCAAC+TGG 0.344185 2_2:+9581071 None:intergenic
GAATGTGATGCCACATCATT+AGG 0.345051 2_2:-9580141 Msa0236650:CDS
GGAGAATCTGCCGTTGAGTT+AGG 0.366917 2_2:-9581562 Msa0236650:CDS
GCAAGTTGAACATTAAATTT+GGG 0.368287 2_2:-9581750 Msa0236650:CDS
ATTAAATTTGGGAGGGATGA+TGG 0.374567 2_2:-9581739 Msa0236650:CDS
AGTGGATGGTCGGGGCCCCT+TGG 0.390912 2_2:-9581779 Msa0236650:CDS
TGTGGAACCACTGCCACGTT+AGG 0.394002 2_2:-9580246 Msa0236650:CDS
AGAAGGCCTGAATGCTCGTT+GGG 0.394350 2_2:-9581261 Msa0236650:CDS
TCTCGCCTTTCAGCTTCAAC+TGG 0.394391 2_2:+9580175 None:intergenic
TCATTAGGCCTATCTTTGTA+AGG 0.401300 2_2:+9581652 None:intergenic
CCCTAAAACCTTTGTTGTAT+CGG 0.403915 2_2:-9582412 Msa0236650:five_prime_UTR
ATAGATAGTGTACCTTCATT+AGG 0.408385 2_2:+9581637 None:intergenic
ACTCACTGCATCATTTATCT+TGG 0.411650 2_2:+9580719 None:intergenic
GCGAATGGCCCAGACAAGTT+TGG 0.413491 2_2:+9581471 None:intergenic
TCTTTCTGCCAAACTTGTCT+GGG 0.424579 2_2:-9581479 Msa0236650:CDS
CAGTCATTACAGCCTCTTCA+TGG 0.425419 2_2:+9580874 None:intergenic
TTGTGCAGCCTTACAAAGAT+AGG 0.432049 2_2:-9581660 Msa0236650:CDS
TCTTAGAAAATGCGATAGAC+TGG 0.437829 2_2:-9577956 Msa0236650:three_prime_UTR
GCTGATCCTTCCTTTGAGCC+TGG 0.439737 2_2:-9581592 Msa0236650:CDS
CATGAAGAGGCTGTAATGAC+TGG 0.448208 2_2:-9580873 Msa0236650:CDS
ATTGACACTGCTCTAACTGC+TGG 0.450510 2_2:-9578110 Msa0236650:CDS
TGACACGTGTCTCGCCCAAT+TGG 0.455639 2_2:+9581704 None:intergenic
AGCAGAGATTAGCTAATTGT+TGG 0.456222 2_2:-9581858 Msa0236650:CDS
GCAGTTAGAGCAGTGTCAAT+TGG 0.458988 2_2:+9578113 None:intergenic
AGAGCTTCGAGTGGATGGTC+GGG 0.470323 2_2:-9581788 Msa0236650:CDS
ATCAACTTCTAGTAAACAAA+AGG 0.472420 2_2:-9578195 Msa0236650:CDS
TGGGTCTGCCGAGATCCAAT+TGG 0.473726 2_2:-9581719 Msa0236650:CDS
TGTTTCTGCTTCCGACGAAA+AGG 0.477764 2_2:+9582387 None:intergenic
GTGGAACCACTGCCACGTTA+GGG 0.484142 2_2:-9580245 Msa0236650:CDS
GCAGATTCTCCAGGACGGCC+AGG 0.492915 2_2:+9581574 None:intergenic
TGCTGCAAATATTGCTGCAT+TGG 0.500659 2_2:-9581301 Msa0236650:CDS
GGGTCTGCCGAGATCCAATT+GGG 0.507284 2_2:-9581718 Msa0236650:CDS
TTAAATTTGGGAGGGATGAT+GGG 0.508701 2_2:-9581738 Msa0236650:CDS
GGAAGATGATGTATAATCAA+AGG 0.510424 2_2:+9581092 None:intergenic
TTGAAAAGCACAACAATGAA+AGG 0.511669 2_2:-9580317 Msa0236650:CDS
AGAGATTAGCTAATTGTTGG+CGG 0.512799 2_2:-9581855 Msa0236650:CDS
AACTCAACGGCAGATTCTCC+AGG 0.512885 2_2:+9581565 None:intergenic
GTGTGTGCAATTCAAAAGCC+TGG 0.513608 2_2:-9580816 Msa0236650:CDS
CAGAGCTTCGAGTGGATGGT+CGG 0.514274 2_2:-9581789 Msa0236650:CDS
GAAGATGATGTATAATCAAA+GGG 0.519406 2_2:+9581093 None:intergenic
ACGACATTCTTCCTCTGTTG+CGG 0.519551 2_2:-9580277 Msa0236650:CDS
ACTGTCTTGATTTCCTGCGC+TGG 0.521832 2_2:+9578143 None:intergenic
CTATCAGAGCTTCGAGTGGA+TGG 0.523011 2_2:-9581793 Msa0236650:CDS
TCCAGGACGGCCAGGCTCAA+AGG 0.523314 2_2:+9581582 None:intergenic
AAACTTGCTCATGTTAAAGC+TGG 0.525982 2_2:-9580753 Msa0236650:CDS
GCAGAGCGATTCAGTGTCAA+TGG 0.527593 2_2:+9581504 None:intergenic
TGAATTGACACAATCTGAGT+AGG 0.528375 2_2:+9579776 None:intergenic
CTGACACCTTACCAGCTTGA+GGG 0.534896 2_2:+9580066 None:intergenic
ACTGCAACACTTAATGCAAA+TGG 0.537645 2_2:-9580843 Msa0236650:CDS
CTTCACTGAATTCTCTCCCA+TGG 0.539169 2_2:-9581614 Msa0236650:CDS
ACATTCTTCCTCTGTTGCGG+TGG 0.540050 2_2:-9580274 Msa0236650:CDS
GTTCAACTTGCGATAGTCCA+AGG 0.542934 2_2:+9581762 None:intergenic
TGGAACCACTGCCACGTTAG+GGG 0.547405 2_2:-9580244 Msa0236650:CDS
TAAACAAAAGGATTCAAGAC+AGG 0.550828 2_2:-9578183 Msa0236650:CDS
GAGCTTCGAGTGGATGGTCG+GGG 0.552607 2_2:-9581787 Msa0236650:CDS
CAGAAGGCCTGAATGCTCGT+TGG 0.553951 2_2:-9581262 Msa0236650:CDS
TTTCAGCAATGAAAATCTTG+TGG 0.555730 2_2:-9581048 Msa0236650:intron
TCTGTTGCGGTGGATGTATG+TGG 0.557391 2_2:-9580264 Msa0236650:CDS
TTATCGGTGGCCCCTCAAGC+TGG 0.557741 2_2:-9580077 Msa0236650:intron
TGAAAAGCACAACAATGAAA+GGG 0.559466 2_2:-9580316 Msa0236650:CDS
ACTGCTGGGCAGAGTAATGA+AGG 0.560209 2_2:-9578095 Msa0236650:CDS
GTTGAACATTAAATTTGGGA+GGG 0.560586 2_2:-9581746 Msa0236650:CDS
CAATCAGATGGTGATAAAGA+AGG 0.565707 2_2:-9580210 Msa0236650:CDS
TACAAAGATAGGCCTAATGA+AGG 0.565777 2_2:-9581649 Msa0236650:CDS
ACCCTGCATTGTCTAGTATG+TGG 0.565903 2_2:+9581440 None:intergenic
CTAGACCAGTTGAAGCTGAA+AGG 0.569023 2_2:-9580180 Msa0236650:CDS
TGTGTGCAATTCAAAAGCCT+GGG 0.572264 2_2:-9580815 Msa0236650:CDS
CTGTCAAGCCCAAGAACAAG+AGG 0.572717 2_2:-9578055 Msa0236650:CDS
AGTTGAACATTAAATTTGGG+AGG 0.574931 2_2:-9581747 Msa0236650:CDS
TTCAACTTGCGATAGTCCAA+GGG 0.575404 2_2:+9581763 None:intergenic
CTCAAAGGAAGGATCAGCCA+TGG 0.576940 2_2:+9581597 None:intergenic
CTTAGAAAATGCGATAGACT+GGG 0.580888 2_2:-9577955 Msa0236650:three_prime_UTR
TAAGCCAGAAGAACCAGCGC+AGG 0.581328 2_2:-9578156 Msa0236650:CDS
AAGGCCTGAATGCTCGTTGG+GGG 0.582507 2_2:-9581259 Msa0236650:CDS
GTGCAGAGTAGCAAGAAGGA+TGG 0.583283 2_2:-9580114 Msa0236650:CDS
GAATTGACACAATCTGAGTA+GGG 0.583687 2_2:+9579777 None:intergenic
GGAAAACAAAATCAATCAGA+TGG 0.587328 2_2:-9580222 Msa0236650:CDS
ACTGACACCTTACCAGCTTG+AGG 0.591782 2_2:+9580065 None:intergenic
TGTCTCGCCCAATTGGATCT+CGG 0.592757 2_2:+9581711 None:intergenic
TGATGTATAATCAAAGGGAG+TGG 0.594545 2_2:+9581098 None:intergenic
GGAACCACTGCCACGTTAGG+GGG 0.597428 2_2:-9580243 Msa0236650:CDS
GGACGGCCAGGCTCAAAGGA+AGG 0.597532 2_2:+9581586 None:intergenic
CTGAGGAAGCTGACCTCAGG+AGG 0.600233 2_2:+9581207 None:intergenic
TTGACACTGCTCTAACTGCT+GGG 0.600516 2_2:-9578109 Msa0236650:CDS
TGACACCTTACCAGCTTGAG+GGG 0.602551 2_2:+9580067 None:intergenic
TAATGAAGGTAAGACTCTGA+AGG 0.603765 2_2:-9578081 Msa0236650:CDS
GAAGGCCTGAATGCTCGTTG+GGG 0.609514 2_2:-9581260 Msa0236650:CDS
ATCCACATACTAGACAATGC+AGG 0.610994 2_2:-9581442 Msa0236650:CDS
ACAAGTGCAGAGTAGCAAGA+AGG 0.616848 2_2:-9580118 Msa0236650:CDS
CATCTCTGAAGACATTCAGA+AGG 0.617687 2_2:-9581278 Msa0236650:CDS
ACAGCCTCTTCATGGTATGT+CGG 0.618076 2_2:+9580882 None:intergenic
CTGCACTTGTCCTAATGATG+TGG 0.618547 2_2:+9580131 None:intergenic
AAAAGGTTCCGATACAACAA+AGG 0.628612 2_2:+9582404 None:intergenic
TCAAAGGAAGGATCAGCCAT+GGG 0.631822 2_2:+9581598 None:intergenic
ATGAAGAGGCTGTAATGACT+GGG 0.631891 2_2:-9580872 Msa0236650:CDS
AGGCCTGAATGCTCGTTGGG+GGG 0.639267 2_2:-9581258 Msa0236650:CDS
TCCACATACTAGACAATGCA+GGG 0.639330 2_2:-9581441 Msa0236650:intron
AGTTGTAGTGCATCCTCCTG+AGG 0.641826 2_2:-9581220 Msa0236650:intron
AAAGCTTCTCTAGCTTCTCG+TGG 0.641908 2_2:-9579744 Msa0236650:intron
TATAATGCGTCCTAACTCAA+CGG 0.642138 2_2:+9581552 None:intergenic
GGATCCGACATACCATGAAG+AGG 0.653779 2_2:-9580886 Msa0236650:CDS
CTCTACTTTCCCGTAAACCG+CGG 0.664238 2_2:+9581527 None:intergenic
TCTTCTATCAGAGCTTCGAG+TGG 0.667601 2_2:-9581797 Msa0236650:CDS
TCTAAGATAAGATACATGGT+CGG 0.675153 2_2:+9577972 None:intergenic
TATGTGGATGTCAATGCGAA+TGG 0.686074 2_2:+9581456 None:intergenic
GTGCAATTCAAAAGCCTGGG+GGG 0.686221 2_2:-9580812 Msa0236650:CDS
CAACGGCAGATTCTCCAGGA+CGG 0.698913 2_2:+9581569 None:intergenic
ACATACATCCACCGCAACAG+AGG 0.701182 2_2:+9580266 None:intergenic
GTGTGCAATTCAAAAGCCTG+GGG 0.708877 2_2:-9580814 Msa0236650:CDS
TCAACTTGCGATAGTCCAAG+GGG 0.732414 2_2:+9581764 None:intergenic
TTAGGACGCATTATAGACCG+CGG 0.761510 2_2:-9581544 Msa0236650:CDS
TGTGCAATTCAAAAGCCTGG+GGG 0.776295 2_2:-9580813 Msa0236650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAAAATTTTCTTATAAAT+AGG + chr2_2:9581220-9581239 None:intergenic 10.0%
!! TAAAAAATAATAATTTACAG+GGG + chr2_2:9581511-9581530 None:intergenic 10.0%
!!! TTCATATATTTTATAATCAT+TGG - chr2_2:9582049-9582068 Msa0236650:intron 10.0%
!!! CCTCTTTAATTTAATTTTTT+CGG - chr2_2:9578258-9578277 Msa0236650:intron 15.0%
!! AAATTTCTGATAAAATGATA+TGG - chr2_2:9578360-9578379 Msa0236650:intron 15.0%
!! TTTAGATAAAATTGTTCAAT+TGG - chr2_2:9580801-9580820 Msa0236650:CDS 15.0%
!! AATTCTTTCTATAATAACTA+AGG - chr2_2:9581033-9581052 Msa0236650:intron 15.0%
!! ATTCTTTCTATAATAACTAA+GGG - chr2_2:9581034-9581053 Msa0236650:intron 15.0%
!! GTAATTTAACAAAACAATAA+GGG - chr2_2:9581154-9581173 Msa0236650:intron 15.0%
!! AAAACAAAAAAAATTTACAG+GGG + chr2_2:9581539-9581558 None:intergenic 15.0%
!! CAAAACAAAAAAAATTTACA+GGG + chr2_2:9581540-9581559 None:intergenic 15.0%
!!! CAAAACAATTTTTTTTTACA+GGG - chr2_2:9581645-9581664 Msa0236650:CDS 15.0%
!!! AAAACAATTTTTTTTTACAG+GGG - chr2_2:9581646-9581665 Msa0236650:CDS 15.0%
!! TAAAAAAAAAAAGTTTACAG+AGG - chr2_2:9581672-9581691 Msa0236650:CDS 15.0%
!! AAAAAAAAAAAGTTTACAGA+GGG - chr2_2:9581673-9581692 Msa0236650:CDS 15.0%
!!! TTTAGTCAAAAAATAGATTT+TGG + chr2_2:9582504-9582523 None:intergenic 15.0%
!!! AAAATCTATTTTTTGACTAA+AGG - chr2_2:9582503-9582522 Msa0236650:intron 15.0%
!! TACTTTACTCTTTCAAATTA+GGG + chr2_2:9577859-9577878 None:intergenic 20.0%
!! TTACTTTACTCTTTCAAATT+AGG + chr2_2:9577860-9577879 None:intergenic 20.0%
!!! TATTGATAACAGTTTAGATT+TGG - chr2_2:9578143-9578162 Msa0236650:CDS 20.0%
!! CCGAAAAAATTAAATTAAAG+AGG + chr2_2:9578261-9578280 None:intergenic 20.0%
!!! AAACTAAAACTTTTGAACTA+TGG + chr2_2:9578328-9578347 None:intergenic 20.0%
!!! AAAAGTTTTAGTTTCTGATA+GGG - chr2_2:9578334-9578353 Msa0236650:intron 20.0%
!! ATATATACCAAAATCAAGAA+AGG + chr2_2:9579421-9579440 None:intergenic 20.0%
!!! AAGCATGAAAATTTTCATAA+CGG + chr2_2:9579942-9579961 None:intergenic 20.0%
!!! AATCAAAAGTTATTAGTTCT+TGG + chr2_2:9580336-9580355 None:intergenic 20.0%
!!! ATTACTTTTATCTGTCATTT+TGG - chr2_2:9580508-9580527 Msa0236650:intron 20.0%
!!! TTTTGATTAAGCATTTAAAC+TGG - chr2_2:9580698-9580717 Msa0236650:intron 20.0%
!!! GATTTCAATTTTTGGAATTT+TGG + chr2_2:9580755-9580774 None:intergenic 20.0%
!!! ATTTTATCTAAACAAATGAG+AGG + chr2_2:9580793-9580812 None:intergenic 20.0%
!! TCTTAAAATGACAACTAAAA+GGG + chr2_2:9580923-9580942 None:intergenic 20.0%
!! GTTATTATAGAAAGAATTGA+TGG + chr2_2:9581031-9581050 None:intergenic 20.0%
!!! ATAACTAAGGGTAATTTTTT+TGG - chr2_2:9581046-9581065 Msa0236650:intron 20.0%
!! GGTAATTTAACAAAACAATA+AGG - chr2_2:9581153-9581172 Msa0236650:intron 20.0%
!!! AATTTTCTTATAAATAGGAC+CGG + chr2_2:9581215-9581234 None:intergenic 20.0%
!!! TCTTTTCTTATATAAAAGAC+CGG - chr2_2:9581454-9581473 Msa0236650:CDS 20.0%
!! AAACAAAAAAAATTTACAGG+GGG + chr2_2:9581538-9581557 None:intergenic 20.0%
!! CCAAAACAAAAAAAATTTAC+AGG + chr2_2:9581541-9581560 None:intergenic 20.0%
!!! CCTGTAAATTTTTTTTGTTT+TGG - chr2_2:9581538-9581557 Msa0236650:CDS 20.0%
!! TTTCTGCAAAAAAAAAAAGT+TGG - chr2_2:9581594-9581613 Msa0236650:CDS 20.0%
!!! CCTGTAAAAAAAAATTGTTT+TGG + chr2_2:9581647-9581666 None:intergenic 20.0%
!!! CCAAAACAATTTTTTTTTAC+AGG - chr2_2:9581644-9581663 Msa0236650:CDS 20.0%
!! AAAAAAAAAAGTTTACAGAG+GGG - chr2_2:9581674-9581693 Msa0236650:CDS 20.0%
!! TGCAACATTAATTATTGTTT+GGG + chr2_2:9581743-9581762 None:intergenic 20.0%
!! ATGCAACATTAATTATTGTT+TGG + chr2_2:9581744-9581763 None:intergenic 20.0%
!! AAAAAAACATCTTCCAATAA+TGG - chr2_2:9582343-9582362 Msa0236650:intron 20.0%
!! AAAAAACATCTTCCAATAAT+GGG - chr2_2:9582344-9582363 Msa0236650:intron 20.0%
!!! ATTTTCTAAGATAAGATACA+TGG + chr2_2:9582407-9582426 None:intergenic 20.0%
!! GTATATTTGTTTGTTCATTT+AGG - chr2_2:9582474-9582493 Msa0236650:five_prime_UTR 20.0%
!!! TTTGGATTAATCATTACTTT+TGG + chr2_2:9582624-9582643 None:intergenic 20.0%
!! TCTTTCAAATTAGGGTTTTA+GGG + chr2_2:9577851-9577870 None:intergenic 25.0%
!!! GTTTTAATTGGGGTAAATTA+GGG + chr2_2:9577941-9577960 None:intergenic 25.0%
!!! AAGGTTTTAGGGTTTTAATT+GGG + chr2_2:9577952-9577971 None:intergenic 25.0%
!!! AAAGGTTTTAGGGTTTTAAT+TGG + chr2_2:9577953-9577972 None:intergenic 25.0%
!!! CTCTTCTTTATTTAACTTGT+CGG - chr2_2:9578034-9578053 Msa0236650:CDS 25.0%
!! ATTACAGCTATATTGTTTTC+CGG - chr2_2:9578072-9578091 Msa0236650:CDS 25.0%
!!! ATTCCATTCAGTTTTGAATT+TGG - chr2_2:9578097-9578116 Msa0236650:CDS 25.0%
!!! TTCCATTCAGTTTTGAATTT+GGG - chr2_2:9578098-9578117 Msa0236650:CDS 25.0%
! TTAAAGAGGAATTAACATCT+GGG + chr2_2:9578247-9578266 None:intergenic 25.0%
! ATTAAAGAGGAATTAACATC+TGG + chr2_2:9578248-9578267 None:intergenic 25.0%
!!! CAAAAGTTTTAGTTTCTGAT+AGG - chr2_2:9578333-9578352 Msa0236650:intron 25.0%
!! GCAAGTTGAACATTAAATTT+GGG - chr2_2:9578622-9578641 Msa0236650:intron 25.0%
! GATAAACAAATCAGTAAGTT+GGG + chr2_2:9578996-9579015 None:intergenic 25.0%
! AGATAAACAAATCAGTAAGT+TGG + chr2_2:9578997-9579016 None:intergenic 25.0%
!! GATTTGTTTATCTACAACTA+AGG - chr2_2:9579004-9579023 Msa0236650:intron 25.0%
! GATAATATGATATGTATTGC+AGG - chr2_2:9579243-9579262 Msa0236650:intron 25.0%
! GAAGATGATGTATAATCAAA+GGG + chr2_2:9579282-9579301 None:intergenic 25.0%
!!! TTGATTTTGGTATATATACG+AGG - chr2_2:9579424-9579443 Msa0236650:intron 25.0%
!! TTTTTATGCGTAAAGATTTG+AGG - chr2_2:9579681-9579700 Msa0236650:intron 25.0%
! GATTATGGAATGTATATTGT+TGG - chr2_2:9580000-9580019 Msa0236650:intron 25.0%
!!! AATTTCTTTTGTTGTCTGAA+TGG - chr2_2:9580025-9580044 Msa0236650:intron 25.0%
! CTATAAATAACAGTCTTTGA+GGG + chr2_2:9580402-9580421 None:intergenic 25.0%
! ACTATAAATAACAGTCTTTG+AGG + chr2_2:9580403-9580422 None:intergenic 25.0%
!! AGACTGTTATTTATAGTCAA+TGG - chr2_2:9580406-9580425 Msa0236650:intron 25.0%
!!! TAGTCAATGGATTGATAATA+TGG - chr2_2:9580419-9580438 Msa0236650:intron 25.0%
! TGATAATATGGAAACCTATA+TGG - chr2_2:9580431-9580450 Msa0236650:intron 25.0%
! TATGTTGAGGTAAAAATACT+TGG - chr2_2:9580553-9580572 Msa0236650:intron 25.0%
!! ACTGCAATGATTTCAATTTT+TGG + chr2_2:9580763-9580782 None:intergenic 25.0%
! GTCTTAAAATGACAACTAAA+AGG + chr2_2:9580924-9580943 None:intergenic 25.0%
!!! TAAATGAGTAAAGGTACTAT+AGG + chr2_2:9580998-9581017 None:intergenic 25.0%
! ATGGGATAATAAATGAGTAA+AGG + chr2_2:9581007-9581026 None:intergenic 25.0%
! ATAGAAAGAATTGATGGAAT+GGG + chr2_2:9581025-9581044 None:intergenic 25.0%
! TATAGAAAGAATTGATGGAA+TGG + chr2_2:9581026-9581045 None:intergenic 25.0%
! AACAAAACAATAAGGGTTAA+TGG - chr2_2:9581161-9581180 Msa0236650:intron 25.0%
! TGTGACTCTTTCTTATAAAT+AGG + chr2_2:9581256-9581275 None:intergenic 25.0%
! AAAAGACCAACATTAAATGA+GGG + chr2_2:9581318-9581337 None:intergenic 25.0%
!!! AATGTTGGTCTTTTCAATAT+TGG - chr2_2:9581324-9581343 Msa0236650:intron 25.0%
!!! ATACTTCACAAATTTTGATG+AGG - chr2_2:9581362-9581381 Msa0236650:intron 25.0%
!!! TACTTCACAAATTTTGATGA+GGG - chr2_2:9581363-9581382 Msa0236650:intron 25.0%
!! ATTTTTGAATGACCTATTAG+GGG + chr2_2:9581569-9581588 None:intergenic 25.0%
!! CATTTTTGAATGACCTATTA+GGG + chr2_2:9581570-9581589 None:intergenic 25.0%
!!! TCATTTTTGAATGACCTATT+AGG + chr2_2:9581571-9581590 None:intergenic 25.0%
! ATCAACTTCTAGTAAACAAA+AGG - chr2_2:9582177-9582196 Msa0236650:intron 25.0%
! CATAACTTAATTCCCATTAT+TGG + chr2_2:9582359-9582378 None:intergenic 25.0%
!!! TCTATTTTTTGACTAAAGGA+AGG - chr2_2:9582507-9582526 Msa0236650:intron 25.0%
!!! CTATTTTTTGACTAAAGGAA+GGG - chr2_2:9582508-9582527 Msa0236650:intron 25.0%
! TAAAATTTGGAACTCACTAC+AGG - chr2_2:9577778-9577797 Msa0236650:three_prime_UTR 30.0%
! CTCTTTCAAATTAGGGTTTT+AGG + chr2_2:9577852-9577871 None:intergenic 30.0%
!!! GGTTTTAATTGGGGTAAATT+AGG + chr2_2:9577942-9577961 None:intergenic 30.0%
!!! AGGTTTTAGGGTTTTAATTG+GGG + chr2_2:9577951-9577970 None:intergenic 30.0%
ATCCCAAATTCAAAACTGAA+TGG + chr2_2:9578103-9578122 None:intergenic 30.0%
AATACACGCATTTGTACAAA+AGG + chr2_2:9578127-9578146 None:intergenic 30.0%
TGATAACAGTTTAGATTTGG+AGG - chr2_2:9578146-9578165 Msa0236650:CDS 30.0%
GATAACAGTTTAGATTTGGA+GGG - chr2_2:9578147-9578166 Msa0236650:CDS 30.0%
! CGCAAGTTGAACATTAAATT+TGG - chr2_2:9578621-9578640 Msa0236650:intron 30.0%
AGTTGAACATTAAATTTGGG+AGG - chr2_2:9578625-9578644 Msa0236650:intron 30.0%
GTTGAACATTAAATTTGGGA+GGG - chr2_2:9578626-9578645 Msa0236650:intron 30.0%
ATAGATAGTGTACCTTCATT+AGG + chr2_2:9578738-9578757 None:intergenic 30.0%
GGAAGATGATGTATAATCAA+AGG + chr2_2:9579283-9579302 None:intergenic 30.0%
TTCATTGCTGAAAAATCCAA+AGG + chr2_2:9579317-9579336 None:intergenic 30.0%
TTTCAGCAATGAAAATCTTG+TGG - chr2_2:9579324-9579343 Msa0236650:intron 30.0%
! ATACAAGCCTTTCTTGATTT+TGG - chr2_2:9579411-9579430 Msa0236650:intron 30.0%
TTGGTATATATACGAGGTAA+TGG - chr2_2:9579430-9579449 Msa0236650:intron 30.0%
! GATTTTATATGATGCTCTCT+AGG - chr2_2:9579459-9579478 Msa0236650:intron 30.0%
CTTAACACCAAACACAAAAT+GGG + chr2_2:9579761-9579780 None:intergenic 30.0%
ATTGCATTATCAATTGCGTA+TGG - chr2_2:9579978-9579997 Msa0236650:intron 30.0%
! TATCAATTGCGTATGGATTA+TGG - chr2_2:9579985-9580004 Msa0236650:intron 30.0%
! TTGAAAAGCACAACAATGAA+AGG - chr2_2:9580055-9580074 Msa0236650:intron 30.0%
! TGAAAAGCACAACAATGAAA+GGG - chr2_2:9580056-9580075 Msa0236650:intron 30.0%
GGAAAACAAAATCAATCAGA+TGG - chr2_2:9580150-9580169 Msa0236650:CDS 30.0%
! GGAAGCTCAAAGAATTTTAT+CGG - chr2_2:9580279-9580298 Msa0236650:CDS 30.0%
TTGACATGTTTATGCCATAT+AGG + chr2_2:9580448-9580467 None:intergenic 30.0%
AACATAGACAAAACTCAGAA+TGG + chr2_2:9580539-9580558 None:intergenic 30.0%
CAAGATTATAGAGAAAGTGA+AGG + chr2_2:9580665-9580684 None:intergenic 30.0%
CTTCACTTTCTCTATAATCT+TGG - chr2_2:9580663-9580682 Msa0236650:intron 30.0%
TTGAAATCATTGCAGTACTA+AGG - chr2_2:9580767-9580786 Msa0236650:CDS 30.0%
GAATGTCTTCTAAACAGAAT+GGG + chr2_2:9580848-9580867 None:intergenic 30.0%
TGAATGTCTTCTAAACAGAA+TGG + chr2_2:9580849-9580868 None:intergenic 30.0%
AAATGACAACTAAAAGGGAA+CGG + chr2_2:9580918-9580937 None:intergenic 30.0%
!!! ACTAAGGGTAATTTTTTTGG+TGG - chr2_2:9581049-9581068 Msa0236650:CDS 30.0%
GACAATGCATAATATATGCA+AGG + chr2_2:9581097-9581116 None:intergenic 30.0%
TTCTAACCCTCATTTAATGT+TGG - chr2_2:9581309-9581328 Msa0236650:CDS 30.0%
GAAAAGACCAACATTAAATG+AGG + chr2_2:9581319-9581338 None:intergenic 30.0%
!! TTGGTCTTTTCAATATTGGT+GGG - chr2_2:9581328-9581347 Msa0236650:intron 30.0%
!!! GTCTTGGTTTTGATGATTTT+TGG - chr2_2:9581429-9581448 Msa0236650:intron 30.0%
TTTCTTATATAAAAGACCGG+AGG - chr2_2:9581457-9581476 Msa0236650:CDS 30.0%
TTCTTATATAAAAGACCGGA+GGG - chr2_2:9581458-9581477 Msa0236650:CDS 30.0%
TAATAATTTACAGGGGAAAC+CGG + chr2_2:9581504-9581523 None:intergenic 30.0%
! TTTTTGAATGACCTATTAGG+GGG + chr2_2:9581617-9581636 None:intergenic 30.0%
! TGGTTTTTGAATGACCTATT+AGG - chr2_2:9581614-9581633 Msa0236650:CDS 30.0%
! GGTTTTTGAATGACCTATTA+GGG - chr2_2:9581615-9581634 Msa0236650:CDS 30.0%
! GTTTTTGAATGACCTATTAG+GGG - chr2_2:9581616-9581635 Msa0236650:CDS 30.0%
! TTTTTGAATGACCTATTAGG+GGG - chr2_2:9581617-9581636 Msa0236650:CDS 30.0%
TCTGTAATATAGGTCATTTC+CGG + chr2_2:9581703-9581722 None:intergenic 30.0%
GAAATGACCTATATTACAGA+GGG - chr2_2:9581703-9581722 Msa0236650:CDS 30.0%
TTCAAATGCGATAACGAAAA+AGG - chr2_2:9581815-9581834 Msa0236650:CDS 30.0%
GATAACGAAAAAGGAACAAA+GGG - chr2_2:9581824-9581843 Msa0236650:CDS 30.0%
TTTATGGCTGTGAAAAGTAA+TGG + chr2_2:9581879-9581898 None:intergenic 30.0%
!! ATGAATCAGGTTGAGATTTA+TGG + chr2_2:9581895-9581914 None:intergenic 30.0%
ACCTGATTCATTATTCTACA+AGG - chr2_2:9581904-9581923 Msa0236650:intron 30.0%
TCCTTGTAGAATAATGAATC+AGG + chr2_2:9581908-9581927 None:intergenic 30.0%
TGTACTATTGTAAAATGAGC+AGG - chr2_2:9582151-9582170 Msa0236650:intron 30.0%
TAAACAAAAGGATTCAAGAC+AGG - chr2_2:9582189-9582208 Msa0236650:intron 30.0%
! TTTTTCTTCCTCTTGTTCTT+GGG + chr2_2:9582328-9582347 None:intergenic 30.0%
!!! TTTTTTCTTCCTCTTGTTCT+TGG + chr2_2:9582329-9582348 None:intergenic 30.0%
! TCTAAGATAAGATACATGGT+CGG + chr2_2:9582403-9582422 None:intergenic 30.0%
CAAAATTGACAAAGCATGTT+TGG + chr2_2:9582598-9582617 None:intergenic 30.0%
!! AGGGCTTTAAAATCGCTTAA+CGG + chr2_2:9577832-9577851 None:intergenic 35.0%
! CCGATACAACAAAGGTTTTA+GGG + chr2_2:9577963-9577982 None:intergenic 35.0%
! CCCTAAAACCTTTGTTGTAT+CGG - chr2_2:9577960-9577979 Msa0236650:three_prime_UTR 35.0%
! TCCGATACAACAAAGGTTTT+AGG + chr2_2:9577964-9577983 None:intergenic 35.0%
AAAAGGTTCCGATACAACAA+AGG + chr2_2:9577971-9577990 None:intergenic 35.0%
TCAAAACTGAATGGAATCAC+CGG + chr2_2:9578094-9578113 None:intergenic 35.0%
! AGCAGAGATTAGCTAATTGT+TGG - chr2_2:9578514-9578533 Msa0236650:intron 35.0%
! AGAGATTAGCTAATTGTTGG+CGG - chr2_2:9578517-9578536 Msa0236650:intron 35.0%
ATTAAATTTGGGAGGGATGA+TGG - chr2_2:9578633-9578652 Msa0236650:intron 35.0%
TTAAATTTGGGAGGGATGAT+GGG - chr2_2:9578634-9578653 Msa0236650:intron 35.0%
TCATTAGGCCTATCTTTGTA+AGG + chr2_2:9578723-9578742 None:intergenic 35.0%
TACAAAGATAGGCCTAATGA+AGG - chr2_2:9578723-9578742 Msa0236650:intron 35.0%
TATAATGCGTCCTAACTCAA+CGG + chr2_2:9578823-9578842 None:intergenic 35.0%
GGAAGCTAAATAGAAAACAG+GGG + chr2_2:9579211-9579230 None:intergenic 35.0%
CGGAAGCTAAATAGAAAACA+GGG + chr2_2:9579212-9579231 None:intergenic 35.0%
CATATTATCGATAACTGCTG+CGG + chr2_2:9579232-9579251 None:intergenic 35.0%
TGATGTATAATCAAAGGGAG+TGG + chr2_2:9579277-9579296 None:intergenic 35.0%
ATATGATGCTCTCTAGGTAT+TGG - chr2_2:9579465-9579484 Msa0236650:intron 35.0%
ACTGCAACACTTAATGCAAA+TGG - chr2_2:9579529-9579548 Msa0236650:intron 35.0%
! AAACTTGCTCATGTTAAAGC+TGG - chr2_2:9579619-9579638 Msa0236650:intron 35.0%
ACTCACTGCATCATTTATCT+TGG + chr2_2:9579656-9579675 None:intergenic 35.0%
! ATCATCTCCCATTTTGTGTT+TGG - chr2_2:9579751-9579770 Msa0236650:CDS 35.0%
GCTTAACACCAAACACAAAA+TGG + chr2_2:9579762-9579781 None:intergenic 35.0%
TCTTCTGCTTATAAGTCTTC+TGG - chr2_2:9579817-9579836 Msa0236650:intron 35.0%
! TTTGTTGTCTGAATGGATGT+AGG - chr2_2:9580032-9580051 Msa0236650:intron 35.0%
CAATCAGATGGTGATAAAGA+AGG - chr2_2:9580162-9580181 Msa0236650:CDS 35.0%
GAAAGGCGAGACAAATTTAA+TGG - chr2_2:9580209-9580228 Msa0236650:CDS 35.0%
! AGCTCAAAGAATTTTATCGG+TGG - chr2_2:9580282-9580301 Msa0236650:CDS 35.0%
! TTTGATAGTCTAGCTGTTTC+TGG - chr2_2:9580375-9580394 Msa0236650:intron 35.0%
!! TCTGAGTTTTGTCTATGTTG+AGG - chr2_2:9580540-9580559 Msa0236650:intron 35.0%
GAATTGACACAATCTGAGTA+GGG + chr2_2:9580598-9580617 None:intergenic 35.0%
TGAATTGACACAATCTGAGT+AGG + chr2_2:9580599-9580618 None:intergenic 35.0%
!!! GAGGGAGTATTGTTTTACAT+GGG + chr2_2:9580896-9580915 None:intergenic 35.0%
!!! GTAATTTTTTTGGTGGTGTC+CGG - chr2_2:9581056-9581075 Msa0236650:CDS 35.0%
!!! TAATTTTTTTGGTGGTGTCC+GGG - chr2_2:9581057-9581076 Msa0236650:CDS 35.0%
TGCATAATATATGCAAGGTC+CGG + chr2_2:9581092-9581111 None:intergenic 35.0%
TTCTTATAAATAGGACCGGA+GGG + chr2_2:9581211-9581230 None:intergenic 35.0%
TTTCTTATAAATAGGACCGG+AGG + chr2_2:9581212-9581231 None:intergenic 35.0%
!!! GTTGGTCTTTTCAATATTGG+TGG - chr2_2:9581327-9581346 Msa0236650:intron 35.0%
GCAACAACTAATGATTGTCT+TGG - chr2_2:9581413-9581432 Msa0236650:intron 35.0%
GGAAATGACCTATATTACAG+AGG - chr2_2:9581702-9581721 Msa0236650:CDS 35.0%
TGCTTTACCCTCTGTAATAT+AGG + chr2_2:9581713-9581732 None:intergenic 35.0%
CGATAACGAAAAAGGAACAA+AGG - chr2_2:9581823-9581842 Msa0236650:CDS 35.0%
! TGTGAGGTTTTCGTTTAGAT+AGG - chr2_2:9581931-9581950 Msa0236650:intron 35.0%
! GTTGATTTCATTTCTGCGTT+TGG - chr2_2:9581970-9581989 Msa0236650:intron 35.0%
ATTTCATTTCTGCGTTTGGT+TGG - chr2_2:9581974-9581993 Msa0236650:intron 35.0%
TAATGAAGGTAAGACTCTGA+AGG - chr2_2:9582291-9582310 Msa0236650:intron 35.0%
TCTTAGAAAATGCGATAGAC+TGG - chr2_2:9582416-9582435 Msa0236650:five_prime_UTR 35.0%
CTTAGAAAATGCGATAGACT+GGG - chr2_2:9582417-9582436 Msa0236650:five_prime_UTR 35.0%
! AATGACATTTTGCGCTTTCT+GGG + chr2_2:9582553-9582572 None:intergenic 35.0%
! AAATGACATTTTGCGCTTTC+TGG + chr2_2:9582554-9582573 None:intergenic 35.0%
!! GGCTTTAAAATCGCTTAACG+GGG + chr2_2:9577830-9577849 None:intergenic 40.0%
!! GGGCTTTAAAATCGCTTAAC+GGG + chr2_2:9577831-9577850 None:intergenic 40.0%
! TTGTATCGGAACCTTTTCGT+CGG - chr2_2:9577974-9577993 Msa0236650:three_prime_UTR 40.0%
! ATCTGGGTAGCACTGAATTA+GGG + chr2_2:9578231-9578250 None:intergenic 40.0%
TGTTAAGTAGAGAGAGAGAG+AGG - chr2_2:9578486-9578505 Msa0236650:intron 40.0%
TTCAACTTGCGATAGTCCAA+GGG + chr2_2:9578612-9578631 None:intergenic 40.0%
TTGTGCAGCCTTACAAAGAT+AGG - chr2_2:9578712-9578731 Msa0236650:intron 40.0%
TTCTTTCTGCCAAACTTGTC+TGG - chr2_2:9578892-9578911 Msa0236650:intron 40.0%
TCTTTCTGCCAAACTTGTCT+GGG - chr2_2:9578893-9578912 Msa0236650:intron 40.0%
TATGTGGATGTCAATGCGAA+TGG + chr2_2:9578919-9578938 None:intergenic 40.0%
ATCCACATACTAGACAATGC+AGG - chr2_2:9578930-9578949 Msa0236650:intron 40.0%
TCCACATACTAGACAATGCA+GGG - chr2_2:9578931-9578950 Msa0236650:intron 40.0%
! CAGTAAGTTGGGTAAGAAAG+AGG + chr2_2:9578985-9579004 None:intergenic 40.0%
TGCTGCAAATATTGCTGCAT+TGG - chr2_2:9579071-9579090 Msa0236650:intron 40.0%
! CATCTCTGAAGACATTCAGA+AGG - chr2_2:9579094-9579113 Msa0236650:intron 40.0%
AAATAGAAAACAGGGGCGAA+AGG + chr2_2:9579204-9579223 None:intergenic 40.0%
GCGGAAGCTAAATAGAAAAC+AGG + chr2_2:9579213-9579232 None:intergenic 40.0%
ATGAAGAGGCTGTAATGACT+GGG - chr2_2:9579500-9579519 Msa0236650:intron 40.0%
TGTGTGCAATTCAAAAGCCT+GGG - chr2_2:9579557-9579576 Msa0236650:intron 40.0%
!! CATAGGCATTGAAAGAGTGA+GGG + chr2_2:9579707-9579726 None:intergenic 40.0%
!! TCATAGGCATTGAAAGAGTG+AGG + chr2_2:9579708-9579727 None:intergenic 40.0%
AGATGCATCGTTCTGTTCAT+AGG + chr2_2:9579724-9579743 None:intergenic 40.0%
TGCAATGAAAGGCAAACAGA+AGG + chr2_2:9579878-9579897 None:intergenic 40.0%
!!! ATTTTGTTTTCCCCCTAACG+TGG + chr2_2:9580142-9580161 None:intergenic 40.0%
GAATGTGATGCCACATCATT+AGG - chr2_2:9580231-9580250 Msa0236650:CDS 40.0%
! TACTTGGTCTTTCACTTCTC+AGG - chr2_2:9580569-9580588 Msa0236650:intron 40.0%
! ACTTGGTCTTTCACTTCTCA+GGG - chr2_2:9580570-9580589 Msa0236650:intron 40.0%
CACTCTATTTAGCTGCACTT+AGG - chr2_2:9580722-9580741 Msa0236650:intron 40.0%
TGTCTTCTAAACAGAATGGG+TGG + chr2_2:9580845-9580864 None:intergenic 40.0%
!!! GGAGGGAGTATTGTTTTACA+TGG + chr2_2:9580897-9580916 None:intergenic 40.0%
!!! AATTTTTTTGGTGGTGTCCG+GGG - chr2_2:9581058-9581077 Msa0236650:CDS 40.0%
CATAATATATGCAAGGTCCG+GGG + chr2_2:9581090-9581109 None:intergenic 40.0%
GCATAATATATGCAAGGTCC+GGG + chr2_2:9581091-9581110 None:intergenic 40.0%
! AGAGCTTAACTCAGTTGGTA+AGG + chr2_2:9581119-9581138 None:intergenic 40.0%
TACCAACTGAGTTAAGCTCT+TGG - chr2_2:9581119-9581138 Msa0236650:intron 40.0%
TAAGCTCTTGGAGACAACTA+AGG - chr2_2:9581131-9581150 Msa0236650:intron 40.0%
AAGCTCTTGGAGACAACTAA+GGG - chr2_2:9581132-9581151 Msa0236650:intron 40.0%
! ACCGGAGGGAGTATATTATA+GGG + chr2_2:9581197-9581216 None:intergenic 40.0%
!! GTAGGTCATTGACTCATTTC+CGG - chr2_2:9581482-9581501 Msa0236650:CDS 40.0%
!!! GTTTTGGAATACCCCCTAAT+AGG - chr2_2:9581554-9581573 Msa0236650:CDS 40.0%
!!! GTTTTGGAATACCCCCTAAT+AGG + chr2_2:9581554-9581573 None:intergenic 40.0%
AAAGTTTACAGAGGGGAAAC+CGG - chr2_2:9581681-9581700 Msa0236650:CDS 40.0%
GAACAAAGGGAGTAATGTAG+AGG - chr2_2:9581837-9581856 Msa0236650:CDS 40.0%
! TATTCTACAAGGAGTGTGTG+AGG - chr2_2:9581915-9581934 Msa0236650:intron 40.0%
! TGTTTCTGCTTCCGACGAAA+AGG + chr2_2:9577988-9578007 None:intergenic 45.0%
! CATCTGGGTAGCACTGAATT+AGG + chr2_2:9578232-9578251 None:intergenic 45.0%
TCTTCTATCAGAGCTTCGAG+TGG - chr2_2:9578575-9578594 Msa0236650:intron 45.0%
TCAACTTGCGATAGTCCAAG+GGG + chr2_2:9578611-9578630 None:intergenic 45.0%
GTTCAACTTGCGATAGTCCA+AGG + chr2_2:9578613-9578632 None:intergenic 45.0%
CTTCACTGAATTCTCTCCCA+TGG - chr2_2:9578758-9578777 Msa0236650:intron 45.0%
TCAAAGGAAGGATCAGCCAT+GGG + chr2_2:9578777-9578796 None:intergenic 45.0%
TTAGGACGCATTATAGACCG+CGG - chr2_2:9578828-9578847 Msa0236650:intron 45.0%
GCATTATAGACCGCGGTTTA+CGG - chr2_2:9578835-9578854 Msa0236650:intron 45.0%
CATTATAGACCGCGGTTTAC+GGG - chr2_2:9578836-9578855 Msa0236650:intron 45.0%
ACCCTGCATTGTCTAGTATG+TGG + chr2_2:9578935-9578954 None:intergenic 45.0%
AAGGTCACGCTGTTAAACTG+AGG + chr2_2:9579185-9579204 None:intergenic 45.0%
AATCCAAAGGTGACTGCAAC+TGG + chr2_2:9579304-9579323 None:intergenic 45.0%
ACAGCCTCTTCATGGTATGT+CGG + chr2_2:9579493-9579512 None:intergenic 45.0%
CAGTCATTACAGCCTCTTCA+TGG + chr2_2:9579501-9579520 None:intergenic 45.0%
CATGAAGAGGCTGTAATGAC+TGG - chr2_2:9579499-9579518 Msa0236650:intron 45.0%
GTGTGTGCAATTCAAAAGCC+TGG - chr2_2:9579556-9579575 Msa0236650:intron 45.0%
GTGTGCAATTCAAAAGCCTG+GGG - chr2_2:9579558-9579577 Msa0236650:intron 45.0%
TGTGCAATTCAAAAGCCTGG+GGG - chr2_2:9579559-9579578 Msa0236650:intron 45.0%
GCACACTTCACTGCAATGAA+AGG + chr2_2:9579889-9579908 None:intergenic 45.0%
ACGACATTCTTCCTCTGTTG+CGG - chr2_2:9580095-9580114 Msa0236650:CDS 45.0%
CTAGACCAGTTGAAGCTGAA+AGG - chr2_2:9580192-9580211 Msa0236650:CDS 45.0%
CTGCACTTGTCCTAATGATG+TGG + chr2_2:9580244-9580263 None:intergenic 45.0%
ACAAGTGCAGAGTAGCAAGA+AGG - chr2_2:9580254-9580273 Msa0236650:CDS 45.0%
! AAAGCTTCTCTAGCTTCTCG+TGG - chr2_2:9580628-9580647 Msa0236650:intron 45.0%
GACAACTAAAAGGGAACGGA+GGG + chr2_2:9580914-9580933 None:intergenic 45.0%
TGACAACTAAAAGGGAACGG+AGG + chr2_2:9580915-9580934 None:intergenic 45.0%
CTCCAAGAGCTTAACTCAGT+TGG + chr2_2:9581124-9581143 None:intergenic 45.0%
! GGAGGGAGTATATTATAGGG+GGG + chr2_2:9581194-9581213 None:intergenic 45.0%
! CGGAGGGAGTATATTATAGG+GGG + chr2_2:9581195-9581214 None:intergenic 45.0%
! CCGGAGGGAGTATATTATAG+GGG + chr2_2:9581196-9581215 None:intergenic 45.0%
CCCCTATAATATACTCCCTC+CGG - chr2_2:9581193-9581212 Msa0236650:intron 45.0%
! GACCGGAGGGAGTATATTAT+AGG + chr2_2:9581198-9581217 None:intergenic 45.0%
TATAAAAGACCGGAGGGAGT+AGG - chr2_2:9581464-9581483 Msa0236650:CDS 45.0%
GCAGTTAGAGCAGTGTCAAT+TGG + chr2_2:9582262-9582281 None:intergenic 45.0%
ATTGACACTGCTCTAACTGC+TGG - chr2_2:9582262-9582281 Msa0236650:intron 45.0%
TTGACACTGCTCTAACTGCT+GGG - chr2_2:9582263-9582282 Msa0236650:intron 45.0%
!! TAAATAAAAAACATAAAATT+TGG - chr2_2:9577765-9577784 Msa0236650:three_prime_UTR 5.0%
!!! AATTTACTTTTTTTTTTTTT+TGG + chr2_2:9577897-9577916 None:intergenic 5.0%
!!! AAAATTTTCAAAAAAAATTT+TGG - chr2_2:9581229-9581248 Msa0236650:CDS 5.0%
!! ATAAAAAATAATAATTTACA+GGG + chr2_2:9581512-9581531 None:intergenic 5.0%
!! AATAAAAAATAATAATTTAC+AGG + chr2_2:9581513-9581532 None:intergenic 5.0%
AGTAGAGAGAGAGAGAGGCA+TGG - chr2_2:9578491-9578510 Msa0236650:intron 50.0%
CTATCAGAGCTTCGAGTGGA+TGG - chr2_2:9578579-9578598 Msa0236650:intron 50.0%
TGTCTCGCCCAATTGGATCT+CGG + chr2_2:9578664-9578683 None:intergenic 50.0%
CTCAAAGGAAGGATCAGCCA+TGG + chr2_2:9578778-9578797 None:intergenic 50.0%
AACTCAACGGCAGATTCTCC+AGG + chr2_2:9578810-9578829 None:intergenic 50.0%
GGAGAATCTGCCGTTGAGTT+AGG - chr2_2:9578810-9578829 Msa0236650:intron 50.0%
CTCTACTTTCCCGTAAACCG+CGG + chr2_2:9578848-9578867 None:intergenic 50.0%
GCAGAGCGATTCAGTGTCAA+TGG + chr2_2:9578871-9578890 None:intergenic 50.0%
AGAAGGCCTGAATGCTCGTT+GGG - chr2_2:9579111-9579130 Msa0236650:intron 50.0%
AGTTGTAGTGCATCCTCCTG+AGG - chr2_2:9579152-9579171 Msa0236650:intron 50.0%
AAACTGAGGAAGCTGACCTC+AGG + chr2_2:9579171-9579190 None:intergenic 50.0%
CTTCCAGTTGCAGTCACCTT+TGG - chr2_2:9579298-9579317 Msa0236650:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr2_2:9579381-9579400 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr2_2:9579380-9579399 None:intergenic 50.0%
GGATCCGACATACCATGAAG+AGG - chr2_2:9579486-9579505 Msa0236650:intron 50.0%
GTGCAATTCAAAAGCCTGGG+GGG - chr2_2:9579560-9579579 Msa0236650:intron 50.0%
ACATTCTTCCTCTGTTGCGG+TGG - chr2_2:9580098-9580117 Msa0236650:CDS 50.0%
ACATACATCCACCGCAACAG+AGG + chr2_2:9580109-9580128 None:intergenic 50.0%
TCTGTTGCGGTGGATGTATG+TGG - chr2_2:9580108-9580127 Msa0236650:CDS 50.0%
TCTCGCCTTTCAGCTTCAAC+TGG + chr2_2:9580200-9580219 None:intergenic 50.0%
GTGCAGAGTAGCAAGAAGGA+TGG - chr2_2:9580258-9580277 Msa0236650:CDS 50.0%
TGACACCTTACCAGCTTGAG+GGG + chr2_2:9580308-9580327 None:intergenic 50.0%
CTGACACCTTACCAGCTTGA+GGG + chr2_2:9580309-9580328 None:intergenic 50.0%
ACTGACACCTTACCAGCTTG+AGG + chr2_2:9580310-9580329 None:intergenic 50.0%
AGTCAATGACCTACTCCCTC+CGG + chr2_2:9581476-9581495 None:intergenic 50.0%
!! ATTTCCTGCGCTGGTTCTTC+TGG + chr2_2:9582223-9582242 None:intergenic 50.0%
ACTGTCTTGATTTCCTGCGC+TGG + chr2_2:9582232-9582251 None:intergenic 50.0%
ACTGCTGGGCAGAGTAATGA+AGG - chr2_2:9582277-9582296 Msa0236650:intron 50.0%
CTGTCAAGCCCAAGAACAAG+AGG - chr2_2:9582317-9582336 Msa0236650:intron 50.0%
GAGGGTCTGTGCGTGTTTGT+TGG - chr2_2:9578165-9578184 Msa0236650:CDS 55.0%
CAGAGCTTCGAGTGGATGGT+CGG - chr2_2:9578583-9578602 Msa0236650:intron 55.0%
AGAGCTTCGAGTGGATGGTC+GGG - chr2_2:9578584-9578603 Msa0236650:intron 55.0%
TGGGTCTGCCGAGATCCAAT+TGG - chr2_2:9578653-9578672 Msa0236650:intron 55.0%
GGGTCTGCCGAGATCCAATT+GGG - chr2_2:9578654-9578673 Msa0236650:intron 55.0%
TGACACGTGTCTCGCCCAAT+TGG + chr2_2:9578671-9578690 None:intergenic 55.0%
GCTGATCCTTCCTTTGAGCC+TGG - chr2_2:9578780-9578799 Msa0236650:intron 55.0%
CAACGGCAGATTCTCCAGGA+CGG + chr2_2:9578806-9578825 None:intergenic 55.0%
GCGAATGGCCCAGACAAGTT+TGG + chr2_2:9578904-9578923 None:intergenic 55.0%
CAGAAGGCCTGAATGCTCGT+TGG - chr2_2:9579110-9579129 Msa0236650:intron 55.0%
GAAGGCCTGAATGCTCGTTG+GGG - chr2_2:9579112-9579131 Msa0236650:intron 55.0%
AAGGCCTGAATGCTCGTTGG+GGG - chr2_2:9579113-9579132 Msa0236650:intron 55.0%
GAGAGAGAGAGAGAGGGAGA+GGG + chr2_2:9579375-9579394 None:intergenic 55.0%
AGAGAGAGAGAGAGAGGGAG+AGG + chr2_2:9579376-9579395 None:intergenic 55.0%
AATTCAAAAGCCTGGGGGGC+AGG - chr2_2:9579564-9579583 Msa0236650:intron 55.0%
ATTCAAAAGCCTGGGGGGCA+GGG - chr2_2:9579565-9579584 Msa0236650:intron 55.0%
TGTGGAACCACTGCCACGTT+AGG - chr2_2:9580126-9580145 Msa0236650:CDS 55.0%
GTGGAACCACTGCCACGTTA+GGG - chr2_2:9580127-9580146 Msa0236650:CDS 55.0%
TGGAACCACTGCCACGTTAG+GGG - chr2_2:9580128-9580147 Msa0236650:CDS 55.0%
! TTTTCCCCCTAACGTGGCAG+TGG + chr2_2:9580136-9580155 None:intergenic 55.0%
TAAGCCAGAAGAACCAGCGC+AGG - chr2_2:9582216-9582235 Msa0236650:intron 55.0%
GAGCTTCGAGTGGATGGTCG+GGG - chr2_2:9578585-9578604 Msa0236650:intron 60.0%
AGGCCTGAATGCTCGTTGGG+GGG - chr2_2:9579114-9579133 Msa0236650:intron 60.0%
TCTCCCCCCAACGAGCATTC+AGG + chr2_2:9579120-9579139 None:intergenic 60.0%
TGAATGCTCGTTGGGGGGAG+AGG - chr2_2:9579119-9579138 Msa0236650:intron 60.0%
CTGAGGAAGCTGACCTCAGG+AGG + chr2_2:9579168-9579187 None:intergenic 60.0%
AGAGAGAGAGGGAGAGGGAG+GGG + chr2_2:9579370-9579389 None:intergenic 60.0%
GAGAGAGAGAGGGAGAGGGA+GGG + chr2_2:9579371-9579390 None:intergenic 60.0%
AGAGAGAGAGAGGGAGAGGG+AGG + chr2_2:9579372-9579391 None:intergenic 60.0%
GGAACCACTGCCACGTTAGG+GGG - chr2_2:9580129-9580148 Msa0236650:CDS 60.0%
TTATCGGTGGCCCCTCAAGC+TGG - chr2_2:9580295-9580314 Msa0236650:CDS 60.0%
GGACGGCCAGGCTCAAAGGA+AGG + chr2_2:9578789-9578808 None:intergenic 65.0%
TCCTTTGAGCCTGGCCGTCC+TGG - chr2_2:9578789-9578808 Msa0236650:intron 65.0%
TCCAGGACGGCCAGGCTCAA+AGG + chr2_2:9578793-9578812 None:intergenic 65.0%
GCAGATTCTCCAGGACGGCC+AGG + chr2_2:9578801-9578820 None:intergenic 65.0%
TGCTCGTTGGGGGGAGAGGA+TGG - chr2_2:9579123-9579142 Msa0236650:intron 65.0%
AGAGAGAGGGAGAGGGAGGG+GGG + chr2_2:9579368-9579387 None:intergenic 65.0%
GAGAGAGAGGGAGAGGGAGG+GGG + chr2_2:9579369-9579388 None:intergenic 65.0%
TGAAAGACACCCTGCCCCCC+AGG + chr2_2:9579577-9579596 None:intergenic 65.0%
GGTGGCCCCTCAAGCTGGTA+AGG - chr2_2:9580300-9580319 Msa0236650:CDS 65.0%
AAGGTCCGGGGTTCGAACCC+CGG + chr2_2:9581078-9581097 None:intergenic 65.0%
AGTGGATGGTCGGGGCCCCT+TGG - chr2_2:9578593-9578612 Msa0236650:intron 70.0%
GAGAGAGGGAGAGGGAGGGG+GGG + chr2_2:9579367-9579386 None:intergenic 70.0%
GGTGTCCGGGGTTCGAACCC+CGG - chr2_2:9581070-9581089 Msa0236650:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 9577739 9582655 9577739 ID=Msa0236650;Name=Msa0236650
chr2_2 mRNA 9577739 9582655 9577739 ID=Msa0236650-mRNA-1;Parent=Msa0236650;Name=Msa0236650-mRNA-1;_AED=0.07;_eAED=0.07;_QI=139|1|1|1|0.75|0.66|9|283|449
chr2_2 exon 9577739 9578221 9577739 ID=Msa0236650-mRNA-1:exon:4164;Parent=Msa0236650-mRNA-1
chr2_2 exon 9579745 9579803 9579745 ID=Msa0236650-mRNA-1:exon:4163;Parent=Msa0236650-mRNA-1
chr2_2 exon 9580078 9580340 9580078 ID=Msa0236650-mRNA-1:exon:4162;Parent=Msa0236650-mRNA-1
chr2_2 exon 9580725 9580913 9580725 ID=Msa0236650-mRNA-1:exon:4161;Parent=Msa0236650-mRNA-1
chr2_2 exon 9581049 9581129 9581049 ID=Msa0236650-mRNA-1:exon:4160;Parent=Msa0236650-mRNA-1
chr2_2 exon 9581221 9581335 9581221 ID=Msa0236650-mRNA-1:exon:4159;Parent=Msa0236650-mRNA-1
chr2_2 exon 9581442 9581898 9581442 ID=Msa0236650-mRNA-1:exon:4158;Parent=Msa0236650-mRNA-1
chr2_2 exon 9582383 9582496 9582383 ID=Msa0236650-mRNA-1:exon:4157;Parent=Msa0236650-mRNA-1
chr2_2 exon 9582645 9582655 9582645 ID=Msa0236650-mRNA-1:exon:4156;Parent=Msa0236650-mRNA-1
chr2_2 five_prime_UTR 9582645 9582655 9582645 ID=Msa0236650-mRNA-1:five_prime_utr;Parent=Msa0236650-mRNA-1
chr2_2 five_prime_UTR 9582383 9582496 9582383 ID=Msa0236650-mRNA-1:five_prime_utr;Parent=Msa0236650-mRNA-1
chr2_2 five_prime_UTR 9581885 9581898 9581885 ID=Msa0236650-mRNA-1:five_prime_utr;Parent=Msa0236650-mRNA-1
chr2_2 CDS 9581442 9581884 9581442 ID=Msa0236650-mRNA-1:cds;Parent=Msa0236650-mRNA-1
chr2_2 CDS 9581221 9581335 9581221 ID=Msa0236650-mRNA-1:cds;Parent=Msa0236650-mRNA-1
chr2_2 CDS 9581049 9581129 9581049 ID=Msa0236650-mRNA-1:cds;Parent=Msa0236650-mRNA-1
chr2_2 CDS 9580725 9580913 9580725 ID=Msa0236650-mRNA-1:cds;Parent=Msa0236650-mRNA-1
chr2_2 CDS 9580078 9580340 9580078 ID=Msa0236650-mRNA-1:cds;Parent=Msa0236650-mRNA-1
chr2_2 CDS 9579745 9579803 9579745 ID=Msa0236650-mRNA-1:cds;Parent=Msa0236650-mRNA-1
chr2_2 CDS 9578022 9578221 9578022 ID=Msa0236650-mRNA-1:cds;Parent=Msa0236650-mRNA-1
chr2_2 three_prime_UTR 9577739 9578021 9577739 ID=Msa0236650-mRNA-1:three_prime_utr;Parent=Msa0236650-mRNA-1
Gene Sequence

>Msa0236650

ATGGAGCAGAGATTAGCTAATTGTTGGCGGTTGACAGTTAACGAAAAGAAATTCATTGAAACTGCTCTTCTATCAGAGCTTCGAGTGGATGGTCGGGGCCCCTTGGACTATCGCAAGTTGAACATTAAATTTGGGAGGGATGATGGGTCTGCCGAGATCCAATTGGGCGAGACACGTGTCATGAGTTTTGTGACTGCTCAACTTGTGCAGCCTTACAAAGATAGGCCTAATGAAGGTACACTATCTATCTTCACTGAATTCTCTCCCATGGCTGATCCTTCCTTTGAGCCTGGCCGTCCTGGAGAATCTGCCGTTGAGTTAGGACGCATTATAGACCGCGGTTTACGGGAAAGTAGAGCCATTGACACTGAATCGCTCTGCATTCTTTCTGCCAAACTTGTCTGGGCCATTCGCATTGACATCCACATACTAGACAATGCAGGAAATCTTGTTGATGCTGCAAATATTGCTGCATTGGCATCTCTGAAGACATTCAGAAGGCCTGAATGCTCGTTGGGGGGAGAGGATGGTCAACAAGTTGTAGTGCATCCTCCTGAGGTGCGCGAGCCACTCCCTTTGATTATACATCATCTTCCAGTTGCAGTCACCTTTGGATTTTTCAGCAATGAAAATCTTGTGGTATTGGATCCGACATACCATGAAGAGGCTGTAATGACTGGGCGCATGACTGCAACACTTAATGCAAATGGTGATGTGTGTGCAATTCAAAAGCCTGGGGGGCAGGGTGTCTTTCAACGAGTTATCATGCATTGCTTGAAACTTGCTCATGTTAAAGCTGGTGATATTACAGCCAAGATAAATGATGCAGTTGAAAAGCACAACAATGAAAGGGCACTACAGAAGATTAAACGACATTCTTCCTCTGTTGCGGTGGATGTATGTGGAACCACTGCCACGTTAGGGGGAAAACAAAATCAATCAGATGGTGATAAAGAAGGTAGTCATCTAGACCAGTTGAAGCTGAAAGGCGAGACAAATTTAATGGAATGTGATGCCACATCATTAGGACAAGTGCAGAGTAGCAAGAAGGATGGAAGCTCAAAGAATTTTATCGGTGGCCCCTCAAGCTGGGATCCCTACTCAGATTGTGTCAATTCAGATCTTCTAAAAGCTTCTCTAGCTTCTCGTGGACAATCAACTTCTAGTAAACAAAAGGATTCAAGACAGGAGACTAAGCCAGAAGAACCAGCGCAGGAAATCAAGACAGTTTCTGCACCAATTGACACTGCTCTAACTGCTGGGCAGAGTAATGAAGGTAAGACTCTGAAGGATGCTGTCAAGCCCAAGAACAAGAGGAAGAAAAAAACATCTTCCAATAATGGGAATTAA

Protein sequence

>Msa0236650

MEQRLANCWRLTVNEKKFIETALLSELRVDGRGPLDYRKLNIKFGRDDGSAEIQLGETRVMSFVTAQLVQPYKDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAIDTESLCILSAKLVWAIRIDIHILDNAGNLVDAANIAALASLKTFRRPECSLGGEDGQQVVVHPPEVREPLPLIIHHLPVAVTFGFFSNENLVVLDPTYHEEAVMTGRMTATLNANGDVCAIQKPGGQGVFQRVIMHCLKLAHVKAGDITAKINDAVEKHNNERALQKIKRHSSSVAVDVCGTTATLGGKQNQSDGDKEGSHLDQLKLKGETNLMECDATSLGQVQSSKKDGSSKNFIGGPSSWDPYSDCVNSDLLKASLASRGQSTSSKQKDSRQETKPEEPAQEIKTVSAPIDTALTAGQSNEGKTLKDAVKPKNKRKKKTSSNNGN*