Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258390 | XP_039689177.1 | 98.853 | 523 | 6 | 0 | 1 | 523 | 1 | 523 | 0.0 | 1055 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258390 | sp|O00567|NOP56_HUMAN | 58.389 | 447 | 174 | 2 | 3 | 449 | 4 | 438 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258390 | B7FLU4 | 98.664 | 524 | 6 | 1 | 1 | 523 | 1 | 524 | 0.0 | 1050 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015440 | Msa1258390 | 0.818596 | 1.804701e-52 | -8.615850e-47 |
| Msa0030200 | Msa1258390 | 0.830741 | 2.476354e-55 | -8.615850e-47 |
| Msa0044890 | Msa1258390 | 0.849823 | 2.524119e-60 | -8.615850e-47 |
| Msa0068970 | Msa1258390 | 0.833973 | 3.919752e-56 | -8.615850e-47 |
| Msa0648780 | Msa1258390 | 0.848712 | 5.145687e-60 | -8.615850e-47 |
| Msa0659050 | Msa1258390 | 0.873081 | 1.938402e-67 | -8.615850e-47 |
| Msa0660850 | Msa1258390 | 0.810631 | 1.047365e-50 | -8.615850e-47 |
| Msa0687440 | Msa1258390 | 0.831942 | 1.254002e-55 | -8.615850e-47 |
| Msa0704980 | Msa1258390 | 0.875694 | 2.517003e-68 | -8.615850e-47 |
| Msa0745740 | Msa1258390 | 0.833745 | 4.469678e-56 | -8.615850e-47 |
| Msa0755700 | Msa1258390 | 0.848407 | 6.250331e-60 | -8.615850e-47 |
| Msa0757940 | Msa1258390 | 0.807717 | 4.409242e-50 | -8.615850e-47 |
| Msa0799260 | Msa1258390 | 0.813813 | 2.116399e-51 | -8.615850e-47 |
| Msa0799310 | Msa1258390 | 0.820048 | 8.428275e-53 | -8.615850e-47 |
| Msa0826990 | Msa1258390 | 0.847001 | 1.523994e-59 | -8.615850e-47 |
| Msa0129660 | Msa1258390 | 0.843958 | 1.017176e-58 | -8.615850e-47 |
| Msa0164770 | Msa1258390 | 0.893951 | 3.893723e-75 | -8.615850e-47 |
| Msa0170200 | Msa1258390 | 0.842609 | 2.329389e-58 | -8.615850e-47 |
| Msa0183090 | Msa1258390 | 0.800051 | 1.728132e-48 | -8.615850e-47 |
| Msa0184200 | Msa1258390 | 0.836015 | 1.198556e-56 | -8.615850e-47 |
| Msa0188440 | Msa1258390 | 0.821153 | 4.696538e-53 | -8.615850e-47 |
| Msa0190350 | Msa1258390 | 0.800821 | 1.204172e-48 | -8.615850e-47 |
| Msa0194770 | Msa1258390 | 0.846433 | 2.178583e-59 | -8.615850e-47 |
| Msa0195340 | Msa1258390 | 0.834992 | 2.174131e-56 | -8.615850e-47 |
| Msa0231030 | Msa1258390 | 0.836739 | 7.842608e-57 | -8.615850e-47 |
| Msa0236650 | Msa1258390 | 0.865440 | 5.898274e-65 | -8.615850e-47 |
| Msa1225720 | Msa1258390 | 0.986686 | 1.262093e-167 | -8.615850e-47 |
| Msa1258390 | Msa1264310 | 0.817221 | 3.689484e-52 | -8.615850e-47 |
| Msa1258390 | Msa1330560 | 0.854490 | 1.189091e-61 | -8.615850e-47 |
| Msa1258390 | Msa1341130 | 0.809449 | 1.882068e-50 | -8.615850e-47 |
| Msa1258390 | Msa1370450 | 0.842966 | 1.872252e-58 | -8.615850e-47 |
| Msa1258390 | Msa1382140 | 0.847237 | 1.313336e-59 | -8.615850e-47 |
| Msa1258390 | Msa1383960 | 0.844218 | 8.663620e-59 | -8.615850e-47 |
| Msa1258390 | Msa1418690 | 0.840074 | 1.082451e-57 | -8.615850e-47 |
| Msa1258390 | Msa1418760 | 0.801971 | 7.001011e-49 | -8.615850e-47 |
| Msa1258390 | Msa1444240 | 0.972594 | 5.065961e-135 | -8.615850e-47 |
| Msa0450710 | Msa1258390 | 0.805962 | 1.036232e-49 | -8.615850e-47 |
| Msa0482200 | Msa1258390 | 0.966385 | 7.517406e-126 | -8.615850e-47 |
| Msa1012740 | Msa1258390 | 0.802062 | 6.702888e-49 | -8.615850e-47 |
| Msa1012770 | Msa1258390 | 0.840579 | 7.986109e-58 | -8.615850e-47 |
| Msa1025460 | Msa1258390 | 0.825346 | 4.928333e-54 | -8.615850e-47 |
| Msa1027640 | Msa1258390 | 0.861527 | 9.639393e-64 | -8.615850e-47 |
| Msa1044480 | Msa1258390 | 0.821346 | 4.239780e-53 | -8.615850e-47 |
| Msa1066190 | Msa1258390 | 0.872085 | 4.170008e-67 | -8.615850e-47 |
| Msa0270550 | Msa1258390 | 0.834201 | 3.436386e-56 | -8.615850e-47 |
| Msa0297630 | Msa1258390 | 0.875550 | 2.821944e-68 | -8.615850e-47 |
| Msa0335730 | Msa1258390 | 0.803847 | 2.866704e-49 | -8.615850e-47 |
| Msa0342850 | Msa1258390 | 0.829084 | 6.272984e-55 | -8.615850e-47 |
| Msa1128120 | Msa1258390 | 0.810758 | 9.830886e-51 | -8.615850e-47 |
| Msa1153060 | Msa1258390 | 0.822062 | 2.895400e-53 | -8.615850e-47 |
| Msa1155180 | Msa1258390 | 0.806701 | 7.238589e-50 | -8.615850e-47 |
| Msa1191830 | Msa1258390 | 0.818449 | 1.948633e-52 | -8.615850e-47 |
| Msa1209850 | Msa1258390 | 0.867748 | 1.088436e-65 | -8.615850e-47 |
| Msa1218110 | Msa1258390 | 0.819539 | 1.101565e-52 | -8.615850e-47 |
| Msa0485510 | Msa1258390 | 0.982478 | 3.388131e-155 | -8.615850e-47 |
| Msa0486070 | Msa1258390 | 0.864533 | 1.135877e-64 | -8.615850e-47 |
| Msa0573140 | Msa1258390 | 0.831971 | 1.233661e-55 | -8.615850e-47 |
| Msa0573270 | Msa1258390 | 0.808245 | 3.405275e-50 | -8.615850e-47 |
| Msa0879540 | Msa1258390 | 0.819870 | 9.255934e-53 | -8.615850e-47 |
| Msa0882580 | Msa1258390 | 0.822617 | 2.152830e-53 | -8.615850e-47 |
| Msa0930490 | Msa1258390 | 0.802123 | 6.513733e-49 | -8.615850e-47 |
| Msa0966210 | Msa1258390 | 0.808215 | 3.455522e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258390 | MtrunA17_Chr4g0057761 | 98.664 | 524 | 6 | 1 | 1 | 523 | 1 | 524 | 0.0 | 1050 |
| Msa1258390 | MtrunA17_Chr4g0035431 | 43.243 | 407 | 216 | 4 | 3 | 408 | 1 | 393 | 4.49e-103 | 320 |
| Msa1258390 | MtrunA17_Chr5g0397481 | 42.892 | 408 | 216 | 5 | 3 | 408 | 1 | 393 | 1.40e-102 | 320 |
| Msa1258390 | MtrunA17_Chr7g0228641 | 27.273 | 220 | 152 | 2 | 192 | 409 | 117 | 330 | 3.20e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258390 | AT1G56110.1 | 78.899 | 436 | 92 | 0 | 1 | 436 | 1 | 436 | 0.0 | 749 |
| Msa1258390 | AT3G12860.1 | 79.909 | 438 | 88 | 0 | 1 | 438 | 1 | 438 | 0.0 | 743 |
| Msa1258390 | AT3G05060.1 | 43.578 | 436 | 232 | 7 | 3 | 437 | 2 | 424 | 4.92e-110 | 338 |
| Msa1258390 | AT5G27120.1 | 45.320 | 406 | 209 | 6 | 3 | 408 | 1 | 393 | 2.17e-109 | 336 |
| Msa1258390 | AT5G27140.2 | 40.385 | 364 | 205 | 4 | 96 | 456 | 57 | 411 | 2.83e-78 | 253 |
| Msa1258390 | AT5G27140.1 | 40.110 | 364 | 204 | 5 | 96 | 456 | 57 | 409 | 6.74e-76 | 246 |
| Msa1258390 | AT1G60170.1 | 25.850 | 147 | 109 | 0 | 273 | 419 | 194 | 340 | 4.58e-15 | 78.2 |
Find 117 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCATTCGGCCTTTGTTTC+TGG | 0.131146 | 8_2:+59595031 | None:intergenic |
| GTTCTTGATCTGATTCTTAT+TGG | 0.163993 | 8_2:-59594014 | Msa1258390:three_prime_UTR |
| CCTCACTCAGACACATTTCT+AGG | 0.170042 | 8_2:-59597447 | Msa1258390:five_prime_UTR |
| TCTTCAACTCTTCAGATTCT+TGG | 0.176244 | 8_2:-59595318 | Msa1258390:CDS |
| CCAACTAGCGACTGCAAATT+TGG | 0.193971 | 8_2:+59595405 | None:intergenic |
| CTTTCAAGAGCAGAGGTAAA+AGG | 0.230717 | 8_2:+59597248 | None:intergenic |
| TTCTTACCTTCCTTAACTTT+AGG | 0.280668 | 8_2:+59596487 | None:intergenic |
| TTTACAATCTTCACAAGTTC+AGG | 0.281626 | 8_2:+59595770 | None:intergenic |
| TAAATAAATTGAAGCCAAAC+AGG | 0.337768 | 8_2:+59597481 | None:intergenic |
| TGTAAACCGGGTTGACAATA+TGG | 0.341142 | 8_2:-59596147 | Msa1258390:CDS |
| CGATGAGCTGAGGACTGTTT+TGG | 0.344431 | 8_2:-59596521 | Msa1258390:CDS |
| AATTCAATAGCAAGGTGATT+TGG | 0.344786 | 8_2:-59596225 | Msa1258390:intron |
| GAAAAGGGTACTTCAGCATT+TGG | 0.369631 | 8_2:-59594874 | Msa1258390:CDS |
| TGATGGACCTATCTGATTAC+AGG | 0.375490 | 8_2:-59595473 | Msa1258390:CDS |
| TGGAATATAAGACCATATTT+AGG | 0.383737 | 8_2:+59595080 | None:intergenic |
| TATTATACCCATTGACGCTT+TGG | 0.385876 | 8_2:+59595619 | None:intergenic |
| AAAGAAAGAGAAGAGAAAGT+TGG | 0.395833 | 8_2:-59594345 | Msa1258390:CDS |
| GGATCAGGAGGATGAAGTTC+AGG | 0.398273 | 8_2:-59594324 | Msa1258390:CDS |
| GTGCAGAGAAGGCTTTGTTC+AGG | 0.401730 | 8_2:-59595296 | Msa1258390:intron |
| TCACTCTTTGTGCAAACATA+TGG | 0.406698 | 8_2:+59595493 | None:intergenic |
| TGTGTCTGAGTGAGGGAAAA+GGG | 0.407616 | 8_2:+59597455 | None:intergenic |
| CCTTCTCGATACACTTGATA+AGG | 0.408230 | 8_2:-59596108 | Msa1258390:CDS |
| AGGTTAAGTTCAATGTAAAC+CGG | 0.411525 | 8_2:-59596160 | Msa1258390:CDS |
| AGAAAGAGTGCCATTGTTGA+TGG | 0.413093 | 8_2:+59597410 | None:intergenic |
| CGCACACAAACTCGTTACTT+TGG | 0.414058 | 8_2:+59596392 | None:intergenic |
| ATCGCCTACCAAGTCAGTTA+AGG | 0.423686 | 8_2:+59595673 | None:intergenic |
| AGAGAAGAGAAAGTTGGATC+AGG | 0.424350 | 8_2:-59594339 | Msa1258390:CDS |
| TGTGCAGAGAGTGGTATTCA+TGG | 0.424908 | 8_2:-59595799 | Msa1258390:intron |
| TGCAACATGACAAATATAAC+AGG | 0.428130 | 8_2:+59594200 | None:intergenic |
| GTTACCGATTTGAGCCGCTT+CGG | 0.428648 | 8_2:-59597299 | Msa1258390:CDS |
| AACTGTTGCAGATACAGAAA+TGG | 0.437507 | 8_2:-59594504 | Msa1258390:intron |
| CAAAGTTGCAAAATTTATTG+AGG | 0.438799 | 8_2:-59595729 | Msa1258390:CDS |
| GCTCATGGAATCGACGAAAT+CGG | 0.440318 | 8_2:-59597350 | Msa1258390:CDS |
| GCTATTGAAAGTGTTGATAA+AGG | 0.448681 | 8_2:-59594763 | Msa1258390:intron |
| TTGATCTGATTCTTATTGGA+AGG | 0.448708 | 8_2:-59594010 | Msa1258390:three_prime_UTR |
| TTTCAAGAGCAGAGGTAAAA+GGG | 0.450795 | 8_2:+59597249 | None:intergenic |
| CTTCTCCACGAAACTGCTCT+TGG | 0.451567 | 8_2:-59597389 | Msa1258390:CDS |
| AGAGGCAACACTCCTAAATA+TGG | 0.455113 | 8_2:-59595092 | Msa1258390:CDS |
| ATGTGTCTGAGTGAGGGAAA+AGG | 0.455712 | 8_2:+59597454 | None:intergenic |
| CCAAATTTGCAGTCGCTAGT+TGG | 0.461168 | 8_2:-59595405 | Msa1258390:CDS |
| AGAAGCCGCCAAAGCGTCAA+TGG | 0.463280 | 8_2:-59595627 | Msa1258390:CDS |
| ATTCATTCGCCATGAGAGTC+AGG | 0.465984 | 8_2:-59596079 | Msa1258390:intron |
| GACTAACTTACCTAAAGTTA+AGG | 0.466664 | 8_2:-59596497 | Msa1258390:CDS |
| GCGAACTTATTCGTGGTGTC+AGG | 0.471160 | 8_2:-59596372 | Msa1258390:CDS |
| CTCACTCAGACACATTTCTA+GGG | 0.472261 | 8_2:-59597446 | Msa1258390:five_prime_UTR |
| TATTGAGGATAAGTCTAAGT+TGG | 0.472777 | 8_2:-59595714 | Msa1258390:CDS |
| TTTACCGAAGCGGCTCAAAT+CGG | 0.474756 | 8_2:+59597295 | None:intergenic |
| TTCTTATTGGAAGGTTGAAA+CGG | 0.477648 | 8_2:-59594001 | Msa1258390:three_prime_UTR |
| GGAGGATGAAGTTCAGGATA+AGG | 0.480853 | 8_2:-59594318 | Msa1258390:CDS |
| CTTCTTGCTTGAATCAGCGT+TGG | 0.485532 | 8_2:+59594280 | None:intergenic |
| ACAAACTCGTTACTTTGGAC+TGG | 0.486068 | 8_2:+59596397 | None:intergenic |
| TATGCCTTGTTCGAAGCTCA+TGG | 0.487581 | 8_2:-59597365 | Msa1258390:CDS |
| AAGAAGGCAAAGTTCAGCTT+AGG | 0.488720 | 8_2:-59596469 | Msa1258390:CDS |
| GAAGAGAAAGTTGGATCAGG+AGG | 0.491231 | 8_2:-59594336 | Msa1258390:CDS |
| TCAGATTCTTGGTGCAGAGA+AGG | 0.492010 | 8_2:-59595307 | Msa1258390:CDS |
| TATACCCATTGACGCTTTGG+CGG | 0.501050 | 8_2:+59595622 | None:intergenic |
| CAGGATAAGGTTGTAGATGA+TGG | 0.505235 | 8_2:-59594305 | Msa1258390:CDS |
| TAAAGTTAAGGAAGGTAAGA+AGG | 0.510060 | 8_2:-59596485 | Msa1258390:CDS |
| AAGAATCTGAAGAGTTGAAG+AGG | 0.512414 | 8_2:+59595320 | None:intergenic |
| CAAATCAACGCCGTTTCTGA+AGG | 0.515356 | 8_2:-59597218 | Msa1258390:intron |
| CAAGTTTGTTGGTGATCTCA+AGG | 0.516645 | 8_2:-59596338 | Msa1258390:intron |
| CATAACCAAGAGCAGTTTCG+TGG | 0.523654 | 8_2:+59597384 | None:intergenic |
| GAGTTTATTACCTTCAGAAA+CGG | 0.525796 | 8_2:+59597208 | None:intergenic |
| ATCATGCCGGGAAACATGGC+AGG | 0.528958 | 8_2:+59594063 | None:intergenic |
| TTGCAAGATAGCGAGCCATT+CGG | 0.530118 | 8_2:+59595018 | None:intergenic |
| AATTGAAGCCTTAACTGACT+TGG | 0.536133 | 8_2:-59595681 | Msa1258390:CDS |
| GGATGCTGAATAAACTAGAA+TGG | 0.537664 | 8_2:-59594234 | Msa1258390:exon |
| AAGGCTGCAGAAATTACAAA+TGG | 0.539269 | 8_2:-59594404 | Msa1258390:CDS |
| TATAATCATGCCGGGAAACA+TGG | 0.540048 | 8_2:+59594059 | None:intergenic |
| TAAGATTATATAATCATGCC+GGG | 0.541060 | 8_2:+59594051 | None:intergenic |
| TTAAGATTATATAATCATGC+CGG | 0.544771 | 8_2:+59594050 | None:intergenic |
| CCTTAGCTCTGCTGTAACTG+TGG | 0.549456 | 8_2:+59596180 | None:intergenic |
| CCACAGTTACAGCAGAGCTA+AGG | 0.551161 | 8_2:-59596180 | Msa1258390:CDS |
| GAAGCCGCCAAAGCGTCAAT+GGG | 0.554490 | 8_2:-59595626 | Msa1258390:intron |
| TTCGAGACTTTCAAGAGCAG+AGG | 0.555968 | 8_2:+59597241 | None:intergenic |
| ACCTTCTCCTGTAATCAGAT+AGG | 0.563907 | 8_2:+59595466 | None:intergenic |
| GTCGCTCTTCAACTTGCTCA+CGG | 0.564026 | 8_2:+59594842 | None:intergenic |
| GTGTCTGAGTGAGGGAAAAG+GGG | 0.568684 | 8_2:+59597456 | None:intergenic |
| AGATGACATGGCTGTAGATA+AGG | 0.568881 | 8_2:-59594423 | Msa1258390:CDS |
| TTTGTGTGCGAACTTATTCG+TGG | 0.571147 | 8_2:-59596379 | Msa1258390:CDS |
| ACCTATCTGATTACAGGAGA+AGG | 0.571797 | 8_2:-59595467 | Msa1258390:CDS |
| AGAATCTGAAGAGTTGAAGA+GGG | 0.574880 | 8_2:+59595321 | None:intergenic |
| CCTAGAAATGTGTCTGAGTG+AGG | 0.576303 | 8_2:+59597447 | None:intergenic |
| TGGACATTGATCAAGTCCAC+AGG | 0.578477 | 8_2:+59595513 | None:intergenic |
| GATTTGGAGAAGGCACAGCT+TGG | 0.583090 | 8_2:-59596209 | Msa1258390:CDS |
| CCTATAGTACCTGACTCTCA+TGG | 0.583501 | 8_2:+59596070 | None:intergenic |
| CAAAACAGTCCTCAGCTCAT+CGG | 0.583817 | 8_2:+59596522 | None:intergenic |
| GATTCCATGAGCTTCGAACA+AGG | 0.584519 | 8_2:+59597361 | None:intergenic |
| CTCGACCAATAAAAGAAGAG+TGG | 0.586538 | 8_2:+59595060 | None:intergenic |
| CTAGAAATGTGTCTGAGTGA+GGG | 0.593244 | 8_2:+59597448 | None:intergenic |
| TGCCAGAAACAAAGGCCGAA+TGG | 0.597003 | 8_2:-59595033 | Msa1258390:CDS |
| ATAGCAAGGTGATTTGGAGA+AGG | 0.597287 | 8_2:-59596219 | Msa1258390:intron |
| ATTTGTGAGACTACCAGCAT+GGG | 0.598797 | 8_2:+59595356 | None:intergenic |
| TCGCTAGTTGGTGATAGTGT+TGG | 0.600802 | 8_2:-59595393 | Msa1258390:CDS |
| GGTTAAGTTCAATGTAAACC+GGG | 0.602722 | 8_2:-59596159 | Msa1258390:CDS |
| AACTTACCTAAAGTTAAGGA+AGG | 0.604940 | 8_2:-59596493 | Msa1258390:CDS |
| TATGTTTGCACAAAGAGTGA+TGG | 0.605742 | 8_2:-59595490 | Msa1258390:CDS |
| CGAGCATCTGCCAGAAACAA+AGG | 0.606525 | 8_2:-59595041 | Msa1258390:CDS |
| GAAGCCTTAACTGACTTGGT+AGG | 0.607529 | 8_2:-59595677 | Msa1258390:CDS |
| GAATGACCATATTGTCAACC+CGG | 0.609844 | 8_2:+59596141 | None:intergenic |
| AGGACAAGATTTGTCCCCTG+TGG | 0.610718 | 8_2:-59595529 | Msa1258390:CDS |
| GGTGTAGCAGAGTCTAAGAT+CGG | 0.612323 | 8_2:-59596448 | Msa1258390:CDS |
| CCTTATCAAGTGTATCGAGA+AGG | 0.614254 | 8_2:+59596108 | None:intergenic |
| AATTACAAATGGTGATGCGG+AGG | 0.625035 | 8_2:-59594393 | Msa1258390:CDS |
| GCTTAACAACTTTACCGAAG+CGG | 0.627626 | 8_2:+59597285 | None:intergenic |
| TGACATCAATGTTCTTACGA+GGG | 0.630630 | 8_2:+59594794 | None:intergenic |
| AATTTGTGAGACTACCAGCA+TGG | 0.634495 | 8_2:+59595355 | None:intergenic |
| GCTCGTTTGATATCCCATGC+TGG | 0.639782 | 8_2:-59595369 | Msa1258390:CDS |
| GTATTATGACCGATGAGCTG+AGG | 0.640224 | 8_2:-59596531 | Msa1258390:CDS |
| AGCTGCAGATGGAGATGACA+TGG | 0.642008 | 8_2:-59594435 | Msa1258390:CDS |
| AGAAATTACAAATGGTGATG+CGG | 0.643384 | 8_2:-59594396 | Msa1258390:CDS |
| ATGACATCAATGTTCTTACG+AGG | 0.650333 | 8_2:+59594793 | None:intergenic |
| GACATCAATGTTCTTACGAG+GGG | 0.656258 | 8_2:+59594795 | None:intergenic |
| AGGCGATGAAGATAAAGCAA+AGG | 0.667446 | 8_2:-59595657 | Msa1258390:CDS |
| GGACATTGATCAAGTCCACA+GGG | 0.677216 | 8_2:+59595514 | None:intergenic |
| GAATCTGAAGAGTTGAAGAG+GGG | 0.696575 | 8_2:+59595322 | None:intergenic |
| GACATTGATCAAGTCCACAG+GGG | 0.785794 | 8_2:+59595515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATGACTTTTTTCAA+TGG | - | chr8_2:59594571-59594590 | Msa1258390:intron | 15.0% |
| !!! | TTTTGAAGAAATATATATCT+TGG | - | chr8_2:59594625-59594644 | Msa1258390:intron | 15.0% |
| !! | TTTGAAGAAATATATATCTT+GGG | - | chr8_2:59594626-59594645 | Msa1258390:intron | 15.0% |
| !! | TTATAGGATTATTTATCTAT+TGG | - | chr8_2:59595584-59595603 | Msa1258390:intron | 15.0% |
| !! | TATGAATCTGTTATGTAATA+GGG | - | chr8_2:59594261-59594280 | Msa1258390:CDS | 20.0% |
| !!! | CAAGAAATAGATATTTGTTA+AGG | - | chr8_2:59594740-59594759 | Msa1258390:intron | 20.0% |
| !! | AAAAAAATACAGGTCAAAAT+GGG | + | chr8_2:59595154-59595173 | None:intergenic | 20.0% |
| !! | GAAAAGAAACAAAAAAATAC+AGG | + | chr8_2:59595164-59595183 | None:intergenic | 20.0% |
| !! | AAACCTAAAATTAAACATCA+AGG | + | chr8_2:59596159-59596178 | None:intergenic | 20.0% |
| !! | GATAGATAAAATTACTATAC+AGG | + | chr8_2:59596472-59596491 | None:intergenic | 20.0% |
| !! | TATAATTTATGTAGTGCATT+AGG | + | chr8_2:59596871-59596890 | None:intergenic | 20.0% |
| !! | GAAAAAGAAATCAAAAAAGA+AGG | - | chr8_2:59597162-59597181 | Msa1258390:intron | 20.0% |
| !! | TTAAGATTATATAATCATGC+CGG | + | chr8_2:59597370-59597389 | None:intergenic | 20.0% |
| ! | GTATGAATCTGTTATGTAAT+AGG | - | chr8_2:59594260-59594279 | Msa1258390:CDS | 25.0% |
| ! | ATGAATCTGTTATGTAATAG+GGG | - | chr8_2:59594262-59594281 | Msa1258390:CDS | 25.0% |
| ! | ATAGGGGTTATTTATTTAAC+TGG | - | chr8_2:59594278-59594297 | Msa1258390:CDS | 25.0% |
| ! | GTTATTTATTTAACTGGTAC+TGG | - | chr8_2:59594284-59594303 | Msa1258390:CDS | 25.0% |
| !! | AATGTTGTTTATGAAGCTTT+AGG | - | chr8_2:59594387-59594406 | Msa1258390:CDS | 25.0% |
| ! | TTTCAGCTAAAAAGATTATG+TGG | - | chr8_2:59594511-59594530 | Msa1258390:intron | 25.0% |
| !!! | AAAATCGACTCTAAAATGAA+AGG | + | chr8_2:59594670-59594689 | None:intergenic | 25.0% |
| !!! | TTATCACCTTTGTCATTTTT+GGG | + | chr8_2:59594712-59594731 | None:intergenic | 25.0% |
| !!! | ATTATCACCTTTGTCATTTT+TGG | + | chr8_2:59594713-59594732 | None:intergenic | 25.0% |
| !!! | CTTAAGTTGTTTTTGTTTGT+TGG | - | chr8_2:59594850-59594869 | Msa1258390:CDS | 25.0% |
| ! | CAAAAAAATACAGGTCAAAA+TGG | + | chr8_2:59595155-59595174 | None:intergenic | 25.0% |
| ! | CTTACTATGTTAACATCATA+TGG | - | chr8_2:59595528-59595547 | Msa1258390:CDS | 25.0% |
| ! | CAAAGTTGCAAAATTTATTG+AGG | - | chr8_2:59595688-59595707 | Msa1258390:CDS | 25.0% |
| !!! | TGTCCTTGATGTTTAATTTT+AGG | - | chr8_2:59596153-59596172 | Msa1258390:CDS | 25.0% |
| ! | TGGAATATAAGACCATATTT+AGG | + | chr8_2:59596340-59596359 | None:intergenic | 25.0% |
| !! | ATATTCCACTCTTCTTTTAT+TGG | - | chr8_2:59596352-59596371 | Msa1258390:CDS | 25.0% |
| !! | ATTTTCTCATAGCATGAATT+TGG | - | chr8_2:59596712-59596731 | Msa1258390:intron | 25.0% |
| !!! | TGACTTTTGTTTATTGCTTT+TGG | - | chr8_2:59597304-59597323 | Msa1258390:CDS | 25.0% |
| ! | TAAGATTATATAATCATGCC+GGG | + | chr8_2:59597369-59597388 | None:intergenic | 25.0% |
| !!! | ATTTCTAGGGTTTTCGTTTT+CGG | - | chr8_2:59593984-59594003 | Msa1258390:three_prime_UTR | 30.0% |
| GAGTTTATTACCTTCAGAAA+CGG | + | chr8_2:59594212-59594231 | None:intergenic | 30.0% | |
| !! | TTAGTTTGTTTCAGTATGCA+TGG | - | chr8_2:59594444-59594463 | Msa1258390:CDS | 30.0% |
| !! | CTCTAAAATGAAAGGCTATT+AGG | + | chr8_2:59594662-59594681 | None:intergenic | 30.0% |
| !!! | TCATTTTTGGGTGTTTGTTT+AGG | + | chr8_2:59594700-59594719 | None:intergenic | 30.0% |
| !! | TTTGATGTGCTTTGTTTGTT+TGG | - | chr8_2:59594771-59594790 | Msa1258390:CDS | 30.0% |
| ! | TTTCGATATGCTATGTTTTG+AGG | - | chr8_2:59594794-59594813 | Msa1258390:CDS | 30.0% |
| !! | TTCGATATGCTATGTTTTGA+GGG | - | chr8_2:59594795-59594814 | Msa1258390:CDS | 30.0% |
| !!! | AAGTTGTTTTTGTTTGTTGG+TGG | - | chr8_2:59594853-59594872 | Msa1258390:CDS | 30.0% |
| GACTAACTTACCTAAAGTTA+AGG | - | chr8_2:59594920-59594939 | Msa1258390:intron | 30.0% | |
| AACTTACCTAAAGTTAAGGA+AGG | - | chr8_2:59594924-59594943 | Msa1258390:intron | 30.0% | |
| TTCTTACCTTCCTTAACTTT+AGG | + | chr8_2:59594933-59594952 | None:intergenic | 30.0% | |
| TAAAGTTAAGGAAGGTAAGA+AGG | - | chr8_2:59594932-59594951 | Msa1258390:intron | 30.0% | |
| !! | CAACATTTTGACAAGTTTGT+TGG | - | chr8_2:59595068-59595087 | Msa1258390:CDS | 30.0% |
| TGCATTTGAATTCAATAGCA+AGG | - | chr8_2:59595184-59595203 | Msa1258390:intron | 30.0% | |
| AATTCAATAGCAAGGTGATT+TGG | - | chr8_2:59595192-59595211 | Msa1258390:intron | 30.0% | |
| AGGTTAAGTTCAATGTAAAC+CGG | - | chr8_2:59595257-59595276 | Msa1258390:intron | 30.0% | |
| TCAGAGAGCTATAAACTTAT+AGG | - | chr8_2:59595568-59595587 | Msa1258390:intron | 30.0% | |
| TTTACAATCTTCACAAGTTC+AGG | + | chr8_2:59595650-59595669 | None:intergenic | 30.0% | |
| TATTGAGGATAAGTCTAAGT+TGG | - | chr8_2:59595703-59595722 | Msa1258390:CDS | 30.0% | |
| !!! | TTTTTTTCATAGAAACGAGC+AGG | - | chr8_2:59596189-59596208 | Msa1258390:CDS | 30.0% |
| GACAAGTGACTGTTATTATT+GGG | - | chr8_2:59596242-59596261 | Msa1258390:intron | 30.0% | |
| !!! | TCTTTTTTCGTGCTTTATTC+AGG | - | chr8_2:59596290-59596309 | Msa1258390:intron | 30.0% |
| !!! | CTTTTTTCGTGCTTTATTCA+GGG | - | chr8_2:59596291-59596310 | Msa1258390:intron | 30.0% |
| !! | TCAAGAATAGATTGCTTTTC+CGG | - | chr8_2:59596439-59596458 | Msa1258390:CDS | 30.0% |
| TTACTATACAGGAAACAAAC+CGG | + | chr8_2:59596461-59596480 | None:intergenic | 30.0% | |
| ! | CGACTTGACTTTTATGATAA+GGG | - | chr8_2:59596594-59596613 | Msa1258390:intron | 30.0% |
| !! | GCTATTGAAAGTGTTGATAA+AGG | - | chr8_2:59596654-59596673 | Msa1258390:intron | 30.0% |
| !! | TTGAAAGTGTTGATAAAGGT+AGG | - | chr8_2:59596658-59596677 | Msa1258390:intron | 30.0% |
| !! | TGAAAGTGTTGATAAAGGTA+GGG | - | chr8_2:59596659-59596678 | Msa1258390:intron | 30.0% |
| CATATAGCATCACCAAAAAA+TGG | + | chr8_2:59596787-59596806 | None:intergenic | 30.0% | |
| !!! | CATTTTTTGGTGATGCTATA+TGG | - | chr8_2:59596785-59596804 | Msa1258390:intron | 30.0% |
| ! | AGAAATTACAAATGGTGATG+CGG | - | chr8_2:59597021-59597040 | Msa1258390:intron | 30.0% |
| AAAGAAAGAGAAGAGAAAGT+TGG | - | chr8_2:59597072-59597091 | Msa1258390:intron | 30.0% | |
| TGCAACATGACAAATATAAC+AGG | + | chr8_2:59597220-59597239 | None:intergenic | 30.0% | |
| GTTCTTGATCTGATTCTTAT+TGG | - | chr8_2:59597403-59597422 | Msa1258390:CDS | 30.0% | |
| TTGATCTGATTCTTATTGGA+AGG | - | chr8_2:59597407-59597426 | Msa1258390:exon | 30.0% | |
| TTCTTATTGGAAGGTTGAAA+CGG | - | chr8_2:59597416-59597435 | Msa1258390:exon | 30.0% | |
| TTTCAAGAGCAGAGGTAAAA+GGG | + | chr8_2:59594171-59594190 | None:intergenic | 35.0% | |
| CAAACACCCAAAAATGACAA+AGG | - | chr8_2:59594703-59594722 | Msa1258390:intron | 35.0% | |
| ! | CTCAAGGTTGGCATTTATTT+TGG | - | chr8_2:59595095-59595114 | Msa1258390:CDS | 35.0% |
| CCAACAAGTAAAAACACAAG+AGG | + | chr8_2:59595121-59595140 | None:intergenic | 35.0% | |
| !! | CCTCTTGTGTTTTTACTTGT+TGG | - | chr8_2:59595118-59595137 | Msa1258390:intron | 35.0% |
| GGTTAAGTTCAATGTAAACC+GGG | - | chr8_2:59595258-59595277 | Msa1258390:intron | 35.0% | |
| ! | TAACATAGTAAGTGTTGCCT+GGG | + | chr8_2:59595520-59595539 | None:intergenic | 35.0% |
| ! | TTAACATAGTAAGTGTTGCC+TGG | + | chr8_2:59595521-59595540 | None:intergenic | 35.0% |
| ! | TATCAATTTTGTGCAGAGAG+TGG | - | chr8_2:59595609-59595628 | Msa1258390:intron | 35.0% |
| AATTGAAGCCTTAACTGACT+TGG | - | chr8_2:59595736-59595755 | Msa1258390:CDS | 35.0% | |
| TATTATACCCATTGACGCTT+TGG | + | chr8_2:59595801-59595820 | None:intergenic | 35.0% | |
| ! | TCCTTTGTCTCTCTATTTTC+AGG | - | chr8_2:59595868-59595887 | Msa1258390:intron | 35.0% |
| TCCTGAAAATAGAGAGACAA+AGG | + | chr8_2:59595872-59595891 | None:intergenic | 35.0% | |
| TCACTCTTTGTGCAAACATA+TGG | + | chr8_2:59595927-59595946 | None:intergenic | 35.0% | |
| TATGTTTGCACAAAGAGTGA+TGG | - | chr8_2:59595927-59595946 | Msa1258390:intron | 35.0% | |
| AGAATCTGAAGAGTTGAAGA+GGG | + | chr8_2:59596099-59596118 | None:intergenic | 35.0% | |
| AAGAATCTGAAGAGTTGAAG+AGG | + | chr8_2:59596100-59596119 | None:intergenic | 35.0% | |
| TCTTCAACTCTTCAGATTCT+TGG | - | chr8_2:59596099-59596118 | Msa1258390:CDS | 35.0% | |
| !!! | GAGAAACTGTTTGTTTTGTC+AGG | - | chr8_2:59596220-59596239 | Msa1258390:intron | 35.0% |
| GGACAAGTGACTGTTATTAT+TGG | - | chr8_2:59596241-59596260 | Msa1258390:intron | 35.0% | |
| ! | GCGACTTGACTTTTATGATA+AGG | - | chr8_2:59596593-59596612 | Msa1258390:intron | 35.0% |
| TGACATCAATGTTCTTACGA+GGG | + | chr8_2:59596626-59596645 | None:intergenic | 35.0% | |
| ATGACATCAATGTTCTTACG+AGG | + | chr8_2:59596627-59596646 | None:intergenic | 35.0% | |
| CATGCTATGAGAAAATGAGA+TGG | + | chr8_2:59596708-59596727 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTGATGCTATATGG+TGG | - | chr8_2:59596788-59596807 | Msa1258390:intron | 35.0% |
| AACTGTTGCAGATACAGAAA+TGG | - | chr8_2:59596913-59596932 | Msa1258390:intron | 35.0% | |
| !! | CTTCTTCTTCTTGGTTTTCT+TGG | + | chr8_2:59596957-59596976 | None:intergenic | 35.0% |
| ! | AGCTTTTTGCTTCTTCTTCT+TGG | + | chr8_2:59596966-59596985 | None:intergenic | 35.0% |
| AAGGCTGCAGAAATTACAAA+TGG | - | chr8_2:59597013-59597032 | Msa1258390:intron | 35.0% | |
| GGATGCTGAATAAACTAGAA+TGG | - | chr8_2:59597183-59597202 | Msa1258390:intron | 35.0% | |
| CTAGAAATGTGTCTGAGTGA+GGG | + | chr8_2:59593972-59593991 | None:intergenic | 40.0% | |
| CTCACTCAGACACATTTCTA+GGG | - | chr8_2:59593971-59593990 | Msa1258390:three_prime_UTR | 40.0% | |
| !! | AGAAAGAGTGCCATTGTTGA+TGG | + | chr8_2:59594010-59594029 | None:intergenic | 40.0% |
| GCTTAACAACTTTACCGAAG+CGG | + | chr8_2:59594135-59594154 | None:intergenic | 40.0% | |
| CTTTCAAGAGCAGAGGTAAA+AGG | + | chr8_2:59594172-59594191 | None:intergenic | 40.0% | |
| AAGAAGGCAAAGTTCAGCTT+AGG | - | chr8_2:59594948-59594967 | Msa1258390:intron | 40.0% | |
| ! | ACAAACTCGTTACTTTGGAC+TGG | + | chr8_2:59595023-59595042 | None:intergenic | 40.0% |
| TTTGTGTGCGAACTTATTCG+TGG | - | chr8_2:59595038-59595057 | Msa1258390:CDS | 40.0% | |
| !! | CAAGTTTGTTGGTGATCTCA+AGG | - | chr8_2:59595079-59595098 | Msa1258390:CDS | 40.0% |
| !! | TTTGTTGGTGATCTCAAGGT+TGG | - | chr8_2:59595083-59595102 | Msa1258390:CDS | 40.0% |
| TACAGGTCAAAATGGGCAAA+GGG | + | chr8_2:59595147-59595166 | None:intergenic | 40.0% | |
| ATACAGGTCAAAATGGGCAA+AGG | + | chr8_2:59595148-59595167 | None:intergenic | 40.0% | |
| ! | ATAGCAAGGTGATTTGGAGA+AGG | - | chr8_2:59595198-59595217 | Msa1258390:intron | 40.0% |
| ! | TGTAAACCGGGTTGACAATA+TGG | - | chr8_2:59595270-59595289 | Msa1258390:intron | 40.0% |
| GAATGACCATATTGTCAACC+CGG | + | chr8_2:59595279-59595298 | None:intergenic | 40.0% | |
| CCTTATCAAGTGTATCGAGA+AGG | + | chr8_2:59595312-59595331 | None:intergenic | 40.0% | |
| CCTTCTCGATACACTTGATA+AGG | - | chr8_2:59595309-59595328 | Msa1258390:CDS | 40.0% | |
| AGGCGATGAAGATAAAGCAA+AGG | - | chr8_2:59595760-59595779 | Msa1258390:CDS | 40.0% | |
| ! | TGATGGACCTATCTGATTAC+AGG | - | chr8_2:59595944-59595963 | Msa1258390:intron | 40.0% |
| ACCTATCTGATTACAGGAGA+AGG | - | chr8_2:59595950-59595969 | Msa1258390:intron | 40.0% | |
| ACCTTCTCCTGTAATCAGAT+AGG | + | chr8_2:59595954-59595973 | None:intergenic | 40.0% | |
| ATTTGTGAGACTACCAGCAT+GGG | + | chr8_2:59596064-59596083 | None:intergenic | 40.0% | |
| AATTTGTGAGACTACCAGCA+TGG | + | chr8_2:59596065-59596084 | None:intergenic | 40.0% | |
| GAATCTGAAGAGTTGAAGAG+GGG | + | chr8_2:59596098-59596117 | None:intergenic | 40.0% | |
| ! | TTCAGGGCATTAAAAACGAG+AGG | - | chr8_2:59596307-59596326 | Msa1258390:intron | 40.0% |
| AGAGGCAACACTCCTAAATA+TGG | - | chr8_2:59596325-59596344 | Msa1258390:intron | 40.0% | |
| CTCGACCAATAAAAGAAGAG+TGG | + | chr8_2:59596360-59596379 | None:intergenic | 40.0% | |
| ! | TTTGGTGTGTTCTGCAGAAA+AGG | - | chr8_2:59596527-59596546 | Msa1258390:CDS | 40.0% |
| TTGGTGTGTTCTGCAGAAAA+GGG | - | chr8_2:59596528-59596547 | Msa1258390:CDS | 40.0% | |
| !! | GAAAAGGGTACTTCAGCATT+TGG | - | chr8_2:59596543-59596562 | Msa1258390:intron | 40.0% |
| GACATCAATGTTCTTACGAG+GGG | + | chr8_2:59596625-59596644 | None:intergenic | 40.0% | |
| GCTATGAGAAAATGAGATGG+AGG | + | chr8_2:59596705-59596724 | None:intergenic | 40.0% | |
| ! | TATTTCTGCCTGCTACTACA+TGG | - | chr8_2:59596752-59596771 | Msa1258390:intron | 40.0% |
| ATTTCTGCCTGCTACTACAT+GGG | - | chr8_2:59596753-59596772 | Msa1258390:intron | 40.0% | |
| !! | TGGGGGTCTTTTCCATTTTT+TGG | - | chr8_2:59596772-59596791 | Msa1258390:intron | 40.0% |
| AAGAAGCAAAAAGCTGCAGA+TGG | - | chr8_2:59596971-59596990 | Msa1258390:intron | 40.0% | |
| AGATGACATGGCTGTAGATA+AGG | - | chr8_2:59596994-59597013 | Msa1258390:intron | 40.0% | |
| ! | AATTACAAATGGTGATGCGG+AGG | - | chr8_2:59597024-59597043 | Msa1258390:intron | 40.0% |
| AGAGAAGAGAAAGTTGGATC+AGG | - | chr8_2:59597078-59597097 | Msa1258390:intron | 40.0% | |
| CAGGATAAGGTTGTAGATGA+TGG | - | chr8_2:59597112-59597131 | Msa1258390:intron | 40.0% | |
| TATAATCATGCCGGGAAACA+TGG | + | chr8_2:59597361-59597380 | None:intergenic | 40.0% | |
| TGTGTCTGAGTGAGGGAAAA+GGG | + | chr8_2:59593965-59593984 | None:intergenic | 45.0% | |
| ATGTGTCTGAGTGAGGGAAA+AGG | + | chr8_2:59593966-59593985 | None:intergenic | 45.0% | |
| CCTAGAAATGTGTCTGAGTG+AGG | + | chr8_2:59593973-59593992 | None:intergenic | 45.0% | |
| CCTCACTCAGACACATTTCT+AGG | - | chr8_2:59593970-59593989 | Msa1258390:three_prime_UTR | 45.0% | |
| ! | TCGTTTTCGGCCATCAACAA+TGG | - | chr8_2:59593997-59594016 | Msa1258390:three_prime_UTR | 45.0% |
| CATAACCAAGAGCAGTTTCG+TGG | + | chr8_2:59594036-59594055 | None:intergenic | 45.0% | |
| ! | TATGCCTTGTTCGAAGCTCA+TGG | - | chr8_2:59594052-59594071 | Msa1258390:three_prime_UTR | 45.0% |
| GATTCCATGAGCTTCGAACA+AGG | + | chr8_2:59594059-59594078 | None:intergenic | 45.0% | |
| GCTCATGGAATCGACGAAAT+CGG | - | chr8_2:59594067-59594086 | Msa1258390:three_prime_UTR | 45.0% | |
| TTTACCGAAGCGGCTCAAAT+CGG | + | chr8_2:59594125-59594144 | None:intergenic | 45.0% | |
| TTCGAGACTTTCAAGAGCAG+AGG | + | chr8_2:59594179-59594198 | None:intergenic | 45.0% | |
| CAAATCAACGCCGTTTCTGA+AGG | - | chr8_2:59594199-59594218 | Msa1258390:three_prime_UTR | 45.0% | |
| !! | GTTTGTTGGTGGCGATGTAA+AGG | - | chr8_2:59594864-59594883 | Msa1258390:CDS | 45.0% |
| GTATTATGACCGATGAGCTG+AGG | - | chr8_2:59594886-59594905 | Msa1258390:intron | 45.0% | |
| CAAAACAGTCCTCAGCTCAT+CGG | + | chr8_2:59594898-59594917 | None:intergenic | 45.0% | |
| ! | GGTGTAGCAGAGTCTAAGAT+CGG | - | chr8_2:59594969-59594988 | Msa1258390:intron | 45.0% |
| CGCACACAAACTCGTTACTT+TGG | + | chr8_2:59595028-59595047 | None:intergenic | 45.0% | |
| ACAGGTCAAAATGGGCAAAG+GGG | + | chr8_2:59595146-59595165 | None:intergenic | 45.0% | |
| ATTCATTCGCCATGAGAGTC+AGG | - | chr8_2:59595338-59595357 | Msa1258390:CDS | 45.0% | |
| CCTATAGTACCTGACTCTCA+TGG | + | chr8_2:59595350-59595369 | None:intergenic | 45.0% | |
| CCATGAGAGTCAGGTACTAT+AGG | - | chr8_2:59595347-59595366 | Msa1258390:CDS | 45.0% | |
| !! | TTCACATCTGCTTTTGCGCA+TGG | - | chr8_2:59595422-59595441 | Msa1258390:CDS | 45.0% |
| ! | TGGTTTGTGTGTGTGTGTTG+GGG | + | chr8_2:59595456-59595475 | None:intergenic | 45.0% |
| ! | CTGGTTTGTGTGTGTGTGTT+GGG | + | chr8_2:59595457-59595476 | None:intergenic | 45.0% |
| CAACACACACACACAAACCA+GGG | - | chr8_2:59595456-59595475 | Msa1258390:CDS | 45.0% | |
| TGTGCAGAGAGTGGTATTCA+TGG | - | chr8_2:59595618-59595637 | Msa1258390:intron | 45.0% | |
| !! | GAAGCCTTAACTGACTTGGT+AGG | - | chr8_2:59595740-59595759 | Msa1258390:CDS | 45.0% |
| ATCGCCTACCAAGTCAGTTA+AGG | + | chr8_2:59595747-59595766 | None:intergenic | 45.0% | |
| TATACCCATTGACGCTTTGG+CGG | + | chr8_2:59595798-59595817 | None:intergenic | 45.0% | |
| GACATTGATCAAGTCCACAG+GGG | + | chr8_2:59595905-59595924 | None:intergenic | 45.0% | |
| GGACATTGATCAAGTCCACA+GGG | + | chr8_2:59595906-59595925 | None:intergenic | 45.0% | |
| TGGACATTGATCAAGTCCAC+AGG | + | chr8_2:59595907-59595926 | None:intergenic | 45.0% | |
| CCAACTAGCGACTGCAAATT+TGG | + | chr8_2:59596015-59596034 | None:intergenic | 45.0% | |
| CCAAATTTGCAGTCGCTAGT+TGG | - | chr8_2:59596012-59596031 | Msa1258390:intron | 45.0% | |
| !! | TCGCTAGTTGGTGATAGTGT+TGG | - | chr8_2:59596024-59596043 | Msa1258390:intron | 45.0% |
| ! | TCAGATTCTTGGTGCAGAGA+AGG | - | chr8_2:59596110-59596129 | Msa1258390:CDS | 45.0% |
| TTGCAAGATAGCGAGCCATT+CGG | + | chr8_2:59596402-59596421 | None:intergenic | 45.0% | |
| ! | GCGCATCTGAATCATGCTTT+TGG | - | chr8_2:59596509-59596528 | Msa1258390:CDS | 45.0% |
| GAAAATGAGATGGAGGCAGT+AGG | + | chr8_2:59596698-59596717 | None:intergenic | 45.0% | |
| TTTCTGCCTGCTACTACATG+GGG | - | chr8_2:59596754-59596773 | Msa1258390:intron | 45.0% | |
| GAAGAGAAAGTTGGATCAGG+AGG | - | chr8_2:59597081-59597100 | Msa1258390:intron | 45.0% | |
| GGAGGATGAAGTTCAGGATA+AGG | - | chr8_2:59597099-59597118 | Msa1258390:intron | 45.0% | |
| CTTCTTGCTTGAATCAGCGT+TGG | + | chr8_2:59597140-59597159 | None:intergenic | 45.0% | |
| ! | TTTTGTCCTGCCATGTTTCC+CGG | - | chr8_2:59597348-59597367 | Msa1258390:CDS | 45.0% |
| GTGTCTGAGTGAGGGAAAAG+GGG | + | chr8_2:59593964-59593983 | None:intergenic | 50.0% | |
| CTTCTCCACGAAACTGCTCT+TGG | - | chr8_2:59594028-59594047 | Msa1258390:three_prime_UTR | 50.0% | |
| !! | GTTACCGATTTGAGCCGCTT+CGG | - | chr8_2:59594118-59594137 | Msa1258390:three_prime_UTR | 50.0% |
| ! | CGATGAGCTGAGGACTGTTT+TGG | - | chr8_2:59594896-59594915 | Msa1258390:intron | 50.0% |
| GCGAACTTATTCGTGGTGTC+AGG | - | chr8_2:59595045-59595064 | Msa1258390:CDS | 50.0% | |
| ! | GATTTGGAGAAGGCACAGCT+TGG | - | chr8_2:59595208-59595227 | Msa1258390:intron | 50.0% |
| !! | CCTTAGCTCTGCTGTAACTG+TGG | + | chr8_2:59595240-59595259 | None:intergenic | 50.0% |
| CCACAGTTACAGCAGAGCTA+AGG | - | chr8_2:59595237-59595256 | Msa1258390:intron | 50.0% | |
| ! | TGCTTTTGCGCATGGTCTAC+TGG | - | chr8_2:59595430-59595449 | Msa1258390:CDS | 50.0% |
| ! | CCTGGTTTGTGTGTGTGTGT+TGG | + | chr8_2:59595458-59595477 | None:intergenic | 50.0% |
| CCAACACACACACACAAACC+AGG | - | chr8_2:59595455-59595474 | Msa1258390:CDS | 50.0% | |
| ACACACACAAACCAGGGAGT+GGG | - | chr8_2:59595462-59595481 | Msa1258390:CDS | 50.0% | |
| TATCACAATCTCCCACTCCC+TGG | + | chr8_2:59595476-59595495 | None:intergenic | 50.0% | |
| AGGACAAGATTTGTCCCCTG+TGG | - | chr8_2:59595888-59595907 | Msa1258390:intron | 50.0% | |
| GCTCGTTTGATATCCCATGC+TGG | - | chr8_2:59596048-59596067 | Msa1258390:intron | 50.0% | |
| !! | GTGCAGAGAAGGCTTTGTTC+AGG | - | chr8_2:59596121-59596140 | Msa1258390:CDS | 50.0% |
| CGAGCATCTGCCAGAAACAA+AGG | - | chr8_2:59596376-59596395 | Msa1258390:CDS | 50.0% | |
| TGCCAGAAACAAAGGCCGAA+TGG | - | chr8_2:59596384-59596403 | Msa1258390:CDS | 50.0% | |
| ! | AGCCATTCGGCCTTTGTTTC+TGG | + | chr8_2:59596389-59596408 | None:intergenic | 50.0% |
| TGATTCAGATGCGCAGCGTA+AGG | + | chr8_2:59596503-59596522 | None:intergenic | 50.0% | |
| ! | GTCGCTCTTCAACTTGCTCA+CGG | + | chr8_2:59596578-59596597 | None:intergenic | 50.0% |
| TGGAGGCAGTAGGTCTCATA+GGG | + | chr8_2:59596688-59596707 | None:intergenic | 50.0% | |
| ATGGAGGCAGTAGGTCTCAT+AGG | + | chr8_2:59596689-59596708 | None:intergenic | 50.0% | |
| TTCTGCCTGCTACTACATGG+GGG | - | chr8_2:59596755-59596774 | Msa1258390:intron | 50.0% | |
| AAAGACCCCCATGTAGTAGC+AGG | + | chr8_2:59596763-59596782 | None:intergenic | 50.0% | |
| AGCTGCAGATGGAGATGACA+TGG | - | chr8_2:59596982-59597001 | Msa1258390:intron | 50.0% | |
| GGATCAGGAGGATGAAGTTC+AGG | - | chr8_2:59597093-59597112 | Msa1258390:intron | 50.0% | |
| CACACACACAAACCAGGGAG+TGG | - | chr8_2:59595461-59595480 | Msa1258390:CDS | 55.0% | |
| GGGACACTTGTGTGCTTGAG+TGG | + | chr8_2:59595500-59595519 | None:intergenic | 55.0% | |
| CTCAAGCACACAAGTGTCCC+AGG | - | chr8_2:59595500-59595519 | Msa1258390:CDS | 55.0% | |
| ! | AGAAGCCGCCAAAGCGTCAA+TGG | - | chr8_2:59595790-59595809 | Msa1258390:CDS | 55.0% |
| ! | GAAGCCGCCAAAGCGTCAAT+GGG | - | chr8_2:59595791-59595810 | Msa1258390:CDS | 55.0% |
| ATCATGCCGGGAAACATGGC+AGG | + | chr8_2:59597357-59597376 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 59593939 | 59597500 | 59593939 | ID=Msa1258390;Name=Msa1258390 |
| chr8_2 | mRNA | 59593939 | 59597500 | 59593939 | ID=Msa1258390-mRNA-1;Parent=Msa1258390;Name=Msa1258390-mRNA-1;_AED=0.03;_eAED=0.03;_QI=77|1|1|1|1|1|8|305|523 |
| chr8_2 | exon | 59593939 | 59594515 | 59593939 | ID=Msa1258390-mRNA-1:exon:18584;Parent=Msa1258390-mRNA-1 |
| chr8_2 | exon | 59594764 | 59594895 | 59594764 | ID=Msa1258390-mRNA-1:exon:18583;Parent=Msa1258390-mRNA-1 |
| chr8_2 | exon | 59594979 | 59595127 | 59594979 | ID=Msa1258390-mRNA-1:exon:18582;Parent=Msa1258390-mRNA-1 |
| chr8_2 | exon | 59595297 | 59595549 | 59595297 | ID=Msa1258390-mRNA-1:exon:18581;Parent=Msa1258390-mRNA-1 |
| chr8_2 | exon | 59595627 | 59595814 | 59595627 | ID=Msa1258390-mRNA-1:exon:18580;Parent=Msa1258390-mRNA-1 |
| chr8_2 | exon | 59596080 | 59596237 | 59596080 | ID=Msa1258390-mRNA-1:exon:18579;Parent=Msa1258390-mRNA-1 |
| chr8_2 | exon | 59596339 | 59596553 | 59596339 | ID=Msa1258390-mRNA-1:exon:18578;Parent=Msa1258390-mRNA-1 |
| chr8_2 | exon | 59597219 | 59597500 | 59597219 | ID=Msa1258390-mRNA-1:exon:18577;Parent=Msa1258390-mRNA-1 |
| chr8_2 | five_prime_UTR | 59597424 | 59597500 | 59597424 | ID=Msa1258390-mRNA-1:five_prime_utr;Parent=Msa1258390-mRNA-1 |
| chr8_2 | CDS | 59597219 | 59597423 | 59597219 | ID=Msa1258390-mRNA-1:cds;Parent=Msa1258390-mRNA-1 |
| chr8_2 | CDS | 59596339 | 59596553 | 59596339 | ID=Msa1258390-mRNA-1:cds;Parent=Msa1258390-mRNA-1 |
| chr8_2 | CDS | 59596080 | 59596237 | 59596080 | ID=Msa1258390-mRNA-1:cds;Parent=Msa1258390-mRNA-1 |
| chr8_2 | CDS | 59595627 | 59595814 | 59595627 | ID=Msa1258390-mRNA-1:cds;Parent=Msa1258390-mRNA-1 |
| chr8_2 | CDS | 59595297 | 59595549 | 59595297 | ID=Msa1258390-mRNA-1:cds;Parent=Msa1258390-mRNA-1 |
| chr8_2 | CDS | 59594979 | 59595127 | 59594979 | ID=Msa1258390-mRNA-1:cds;Parent=Msa1258390-mRNA-1 |
| chr8_2 | CDS | 59594764 | 59594895 | 59594764 | ID=Msa1258390-mRNA-1:cds;Parent=Msa1258390-mRNA-1 |
| chr8_2 | CDS | 59594244 | 59594515 | 59594244 | ID=Msa1258390-mRNA-1:cds;Parent=Msa1258390-mRNA-1 |
| chr8_2 | three_prime_UTR | 59593939 | 59594243 | 59593939 | ID=Msa1258390-mRNA-1:three_prime_utr;Parent=Msa1258390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
