AlfalfaGEDB | Msa1382140

M. sativa cultivar zhongmu-4 / Msa1382140

KEGG: K03678
GO: GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000184 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070478 GO:0070481 GO:0070651 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354
PFAM: PF01138.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382140	XP_003593906.1	96.437	449	16	0	1	449	1	449	0.0	899

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382140	sp\|Q9M209\|CER7_ARATH	60.449	445	147	6	1	433	1	428	0.0	518

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382140	G7IP72	96.437	449	16	0	1	449	1	449	0.0	899

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1382140	Msa1444240	0.860199	2.439543e-63	-8.615850e-47
Msa0659050	Msa1382140	0.812957	3.264286e-51	-8.615850e-47
Msa0728870	Msa1382140	0.814281	1.668644e-51	-8.615850e-47
Msa0164770	Msa1382140	0.817934	2.548787e-52	-8.615850e-47
Msa0194770	Msa1382140	0.983131	6.521612e-157	-8.615850e-47
Msa0236650	Msa1382140	0.932895	4.279454e-95	-8.615850e-47
Msa1225720	Msa1382140	0.858418	8.351108e-63	-8.615850e-47
Msa1258390	Msa1382140	0.847237	1.313336e-59	-8.615850e-47
Msa0482200	Msa1382140	0.861189	1.221874e-63	-8.615850e-47
Msa0297630	Msa1382140	0.919099	6.874064e-87	-8.615850e-47
Msa0485510	Msa1382140	0.836550	8.762009e-57	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382140	MtrunA17_Chr2g0285831	96.437	449	16	0	1	449	1	449	0.0	899
Msa1382140	MtrunA17_Chr1g0180521	90.816	294	27	0	1	294	1	294	0.0	569
Msa1382140	MtrunA17_Chr1g0160941	30.970	268	165	8	11	264	4	265	2.03e-29	116
Msa1382140	MtrunA17_Chr8g0373091	29.368	269	168	7	11	264	4	265	1.12e-26	108
Msa1382140	MtrunA17_Chr1g0146281	26.259	278	186	6	17	278	28	302	2.92e-22	96.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382140	AT3G60500.3	60.449	445	147	6	1	433	1	428	0.0	518
Msa1382140	AT3G60500.2	60.449	445	147	6	1	433	1	428	0.0	518
Msa1382140	AT3G60500.1	60.449	445	147	6	1	433	1	428	0.0	518
Msa1382140	AT3G60500.4	63.969	383	117	5	1	377	1	368	3.22e-171	485
Msa1382140	AT3G12990.1	70.861	302	88	0	1	302	1	302	8.28e-159	451
Msa1382140	AT3G12990.3	70.861	302	88	0	1	302	1	302	8.28e-159	451
Msa1382140	AT3G12990.4	72.535	284	78	0	1	284	1	284	6.58e-151	430
Msa1382140	AT3G12990.2	75.234	214	53	0	1	214	1	214	1.97e-116	340
Msa1382140	AT3G07750.1	30.741	270	163	9	11	264	3	264	5.43e-28	112
Msa1382140	AT3G07750.2	30.741	270	163	9	11	264	3	264	5.43e-28	112
Msa1382140	AT1G60080.1	28.253	269	175	5	17	269	26	292	6.36e-24	101

Find 125 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGCAAGTTGAACATTAAATT+TGG	0.095631	tig0020490:+77042	Msa1382140:CDS
CATAACTTAATTCCCATTAT+TGG	0.197437	tig0020490:-80780	None:intergenic
TTCTTTCTGCCAAACTTGTC+TGG	0.208475	tig0020490:+77313	Msa1382140:CDS
ATTTCCTGCGCTGGTTCTTC+TGG	0.247600	tig0020490:-80644	None:intergenic
TCCTTTGAGCCTGGCCGTCC+TGG	0.261790	tig0020490:+77210	Msa1382140:CDS
CTTCCAGTTGCAGTCACCTT+TGG	0.284591	tig0020490:+77719	Msa1382140:CDS
CATTATAGACCGCGGTTTAC+GGG	0.295153	tig0020490:+77257	Msa1382140:CDS
GTATATTTGTTTGTTCATTT+AGG	0.315602	tig0020490:+80898	Msa1382140:three_prime_UTR
CAAAATTGACAAAGCATGTT+TGG	0.315633	tig0020490:-81019	None:intergenic
GAAAGGCGAGACAAATTTAA+TGG	0.327208	tig0020490:+78632	Msa1382140:CDS
GCATTATAGACCGCGGTTTA+CGG	0.332870	tig0020490:+77256	Msa1382140:CDS
TTTGGATTAATCATTACTTT+TGG	0.343972	tig0020490:-81045	None:intergenic
AATCCAAAGGTGACTGCAAC+TGG	0.344185	tig0020490:-77722	None:intergenic
GAATGTGATGCCACATCATT+AGG	0.345051	tig0020490:+78654	Msa1382140:CDS
GGAGAATCTGCCGTTGAGTT+AGG	0.366917	tig0020490:+77231	Msa1382140:CDS
GCAAGTTGAACATTAAATTT+GGG	0.368287	tig0020490:+77043	Msa1382140:CDS
AACCCTAAAACCTTTGTTGT+AGG	0.372913	tig0020490:+76367	Msa1382140:five_prime_UTR
ATTAAATTTGGGAGGGATGA+TGG	0.374567	tig0020490:+77054	Msa1382140:CDS
AGTGGATGGTCGGGGCCCCT+TGG	0.390912	tig0020490:+77014	Msa1382140:CDS
TGTGGAACCACTGCCACGTT+AGG	0.394002	tig0020490:+78549	Msa1382140:CDS
AGAAGGCCTGAATGCTCGTT+GGG	0.394350	tig0020490:+77532	Msa1382140:CDS
TCTCGCCTTTCAGCTTCAAC+TGG	0.394391	tig0020490:-78620	None:intergenic
TCATTAGGCCTATCTTTGTA+AGG	0.401300	tig0020490:-77141	None:intergenic
ATAGATAGTGTACCTTCATT+AGG	0.408385	tig0020490:-77156	None:intergenic
ACTCACTGCATCATTTATCT+TGG	0.411650	tig0020490:-78076	None:intergenic
GCGAATGGCCCAGACAAGTT+TGG	0.413491	tig0020490:-77322	None:intergenic
TCTTTCTGCCAAACTTGTCT+GGG	0.424579	tig0020490:+77314	Msa1382140:CDS
CAGTCATTACAGCCTCTTCA+TGG	0.425419	tig0020490:-77921	None:intergenic
TTGTGCAGCCTTACAAAGAT+AGG	0.432049	tig0020490:+77133	Msa1382140:CDS
TCTTAGAAAATGCGATAGAC+TGG	0.437829	tig0020490:+80840	Msa1382140:three_prime_UTR
GCTGATCCTTCCTTTGAGCC+TGG	0.439737	tig0020490:+77201	Msa1382140:CDS
CATGAAGAGGCTGTAATGAC+TGG	0.448208	tig0020490:+77922	Msa1382140:CDS
ATTGACACTGCTCTAACTGC+TGG	0.450510	tig0020490:+80686	Msa1382140:CDS
TGACACGTGTCTCGCCCAAT+TGG	0.455639	tig0020490:-77089	None:intergenic
AGCAGAGATTAGCTAATTGT+TGG	0.456222	tig0020490:+76935	Msa1382140:CDS
GCAGTTAGAGCAGTGTCAAT+TGG	0.458988	tig0020490:-80683	None:intergenic
AGAGCTTCGAGTGGATGGTC+GGG	0.470323	tig0020490:+77005	Msa1382140:CDS
CCAACTGCTTCCTACAACAA+AGG	0.470812	tig0020490:-76377	None:intergenic
ATCAACTTCTAGTAAACAAA+AGG	0.472420	tig0020490:+80601	Msa1382140:CDS
TGGGTCTGCCGAGATCCAAT+TGG	0.473726	tig0020490:+77074	Msa1382140:CDS
TGTTTCTGCTTCCGACGAAA+AGG	0.475324	tig0020490:-76407	None:intergenic
GTGGAACCACTGCCACGTTA+GGG	0.484142	tig0020490:+78550	Msa1382140:CDS
GCAGATTCTCCAGGACGGCC+AGG	0.492915	tig0020490:-77219	None:intergenic
TGCTGCAAATATTGCTGCAT+TGG	0.500659	tig0020490:+77492	Msa1382140:CDS
GGGTCTGCCGAGATCCAATT+GGG	0.507284	tig0020490:+77075	Msa1382140:CDS
TTAAATTTGGGAGGGATGAT+GGG	0.508701	tig0020490:+77055	Msa1382140:CDS
GGAAGATGATGTATAATCAA+AGG	0.510424	tig0020490:-77701	None:intergenic
TTGAAAAGCACAACAATGAA+AGG	0.511669	tig0020490:+78478	Msa1382140:CDS
AGAGATTAGCTAATTGTTGG+CGG	0.512799	tig0020490:+76938	Msa1382140:CDS
AACTCAACGGCAGATTCTCC+AGG	0.512885	tig0020490:-77228	None:intergenic
GTGTGTGCAATTCAAAAGCC+TGG	0.513608	tig0020490:+77979	Msa1382140:CDS
CAGAGCTTCGAGTGGATGGT+CGG	0.514274	tig0020490:+77004	Msa1382140:CDS
GAAGATGATGTATAATCAAA+GGG	0.519406	tig0020490:-77700	None:intergenic
ACGACATTCTTCCTCTGTTG+CGG	0.519551	tig0020490:+78518	Msa1382140:CDS
ACTGTCTTGATTTCCTGCGC+TGG	0.521832	tig0020490:-80653	None:intergenic
CTATCAGAGCTTCGAGTGGA+TGG	0.523011	tig0020490:+77000	Msa1382140:CDS
TCCAGGACGGCCAGGCTCAA+AGG	0.523314	tig0020490:-77211	None:intergenic
AAACTTGCTCATGTTAAAGC+TGG	0.525982	tig0020490:+78042	Msa1382140:CDS
GCAGAGCGATTCAGTGTCAA+TGG	0.527593	tig0020490:-77289	None:intergenic
TGAATTGACACAATCTGAGT+AGG	0.528375	tig0020490:-79019	None:intergenic
CTGACACCTTACCAGCTTGA+GGG	0.534896	tig0020490:-78729	None:intergenic
ACTGCAACACTTAATGCAAA+TGG	0.537645	tig0020490:+77952	Msa1382140:CDS
CTTCACTGAATTCTCTCCCA+TGG	0.539169	tig0020490:+77179	Msa1382140:CDS
ACATTCTTCCTCTGTTGCGG+TGG	0.540050	tig0020490:+78521	Msa1382140:CDS
GTTCAACTTGCGATAGTCCA+AGG	0.542934	tig0020490:-77031	None:intergenic
TGGAACCACTGCCACGTTAG+GGG	0.547405	tig0020490:+78551	Msa1382140:CDS
TAAACAAAAGGATTCAAGAC+AGG	0.550828	tig0020490:+80613	Msa1382140:CDS
GAGCTTCGAGTGGATGGTCG+GGG	0.552607	tig0020490:+77006	Msa1382140:CDS
CAGAAGGCCTGAATGCTCGT+TGG	0.553951	tig0020490:+77531	Msa1382140:CDS
TTTCAGCAATGAAAATCTTG+TGG	0.555730	tig0020490:+77745	Msa1382140:CDS
TCTGTTGCGGTGGATGTATG+TGG	0.557391	tig0020490:+78531	Msa1382140:CDS
TTATCGGTGGCCCCTCAAGC+TGG	0.557741	tig0020490:+78718	Msa1382140:CDS
TGAAAAGCACAACAATGAAA+GGG	0.559466	tig0020490:+78479	Msa1382140:CDS
ACTGCTGGGCAGAGTAATGA+AGG	0.560209	tig0020490:+80701	Msa1382140:CDS
GTTGAACATTAAATTTGGGA+GGG	0.560586	tig0020490:+77047	Msa1382140:CDS
CCTTTGTTGTAGGAAGCAGT+TGG	0.564103	tig0020490:+76377	Msa1382140:five_prime_UTR
CAATCAGATGGTGATAAAGA+AGG	0.565707	tig0020490:+78585	Msa1382140:CDS
TACAAAGATAGGCCTAATGA+AGG	0.565777	tig0020490:+77144	Msa1382140:CDS
ACCCTGCATTGTCTAGTATG+TGG	0.565903	tig0020490:-77353	None:intergenic
CTAGACCAGTTGAAGCTGAA+AGG	0.569023	tig0020490:+78615	Msa1382140:CDS
TGTGTGCAATTCAAAAGCCT+GGG	0.572264	tig0020490:+77980	Msa1382140:CDS
CTGTCAAGCCCAAGAACAAG+AGG	0.572717	tig0020490:+80741	Msa1382140:CDS
AGTTGAACATTAAATTTGGG+AGG	0.574931	tig0020490:+77046	Msa1382140:CDS
TTCAACTTGCGATAGTCCAA+GGG	0.575404	tig0020490:-77030	None:intergenic
CTCAAAGGAAGGATCAGCCA+TGG	0.576940	tig0020490:-77196	None:intergenic
CTTAGAAAATGCGATAGACT+GGG	0.580888	tig0020490:+80841	Msa1382140:three_prime_UTR
TAAGCCAGAAGAACCAGCGC+AGG	0.581328	tig0020490:+80640	Msa1382140:CDS
AAGGCCTGAATGCTCGTTGG+GGG	0.582507	tig0020490:+77534	Msa1382140:CDS
GTGCAGAGTAGCAAGAAGGA+TGG	0.583283	tig0020490:+78681	Msa1382140:CDS
GAATTGACACAATCTGAGTA+GGG	0.583687	tig0020490:-79018	None:intergenic
GGAAAACAAAATCAATCAGA+TGG	0.587328	tig0020490:+78573	Msa1382140:CDS
ACTGACACCTTACCAGCTTG+AGG	0.591782	tig0020490:-78730	None:intergenic
TGTCTCGCCCAATTGGATCT+CGG	0.592757	tig0020490:-77082	None:intergenic
TGATGTATAATCAAAGGGAG+TGG	0.594545	tig0020490:-77695	None:intergenic
GGAACCACTGCCACGTTAGG+GGG	0.597428	tig0020490:+78552	Msa1382140:CDS
GGACGGCCAGGCTCAAAGGA+AGG	0.597532	tig0020490:-77207	None:intergenic
CTGAGGAAGCTGACCTCAGG+AGG	0.600233	tig0020490:-77586	None:intergenic
TTGACACTGCTCTAACTGCT+GGG	0.600516	tig0020490:+80687	Msa1382140:CDS
TGACACCTTACCAGCTTGAG+GGG	0.602551	tig0020490:-78728	None:intergenic
TAATGAAGGTAAGACTCTGA+AGG	0.603765	tig0020490:+80715	Msa1382140:CDS
GAAGGCCTGAATGCTCGTTG+GGG	0.609514	tig0020490:+77533	Msa1382140:CDS
ATCCACATACTAGACAATGC+AGG	0.610994	tig0020490:+77351	Msa1382140:CDS
ACAAGTGCAGAGTAGCAAGA+AGG	0.616848	tig0020490:+78677	Msa1382140:CDS
CATCTCTGAAGACATTCAGA+AGG	0.617687	tig0020490:+77515	Msa1382140:CDS
ACAGCCTCTTCATGGTATGT+CGG	0.618076	tig0020490:-77913	None:intergenic
CTGCACTTGTCCTAATGATG+TGG	0.618547	tig0020490:-78664	None:intergenic
TCAAAGGAAGGATCAGCCAT+GGG	0.631822	tig0020490:-77195	None:intergenic
ATGAAGAGGCTGTAATGACT+GGG	0.631891	tig0020490:+77923	Msa1382140:CDS
AGGCCTGAATGCTCGTTGGG+GGG	0.639267	tig0020490:+77535	Msa1382140:CDS
TCCACATACTAGACAATGCA+GGG	0.639330	tig0020490:+77352	Msa1382140:CDS
AGTTGTAGTGCATCCTCCTG+AGG	0.641826	tig0020490:+77573	Msa1382140:CDS
AAAGCTTCTCTAGCTTCTCG+TGG	0.641908	tig0020490:+79051	Msa1382140:CDS
TATAATGCGTCCTAACTCAA+CGG	0.642138	tig0020490:-77241	None:intergenic
GGATCCGACATACCATGAAG+AGG	0.653779	tig0020490:+77909	Msa1382140:CDS
CTCTACTTTCCCGTAAACCG+CGG	0.664238	tig0020490:-77266	None:intergenic
TCTTCTATCAGAGCTTCGAG+TGG	0.667601	tig0020490:+76996	Msa1382140:CDS
TCTAAGATAAGATACATGGT+CGG	0.675153	tig0020490:-80824	None:intergenic
TATGTGGATGTCAATGCGAA+TGG	0.686074	tig0020490:-77337	None:intergenic
GTGCAATTCAAAAGCCTGGG+GGG	0.686221	tig0020490:+77983	Msa1382140:CDS
CAACGGCAGATTCTCCAGGA+CGG	0.698913	tig0020490:-77224	None:intergenic
ACATACATCCACCGCAACAG+AGG	0.701182	tig0020490:-78529	None:intergenic
GTGTGCAATTCAAAAGCCTG+GGG	0.708877	tig0020490:+77981	Msa1382140:CDS
TCAACTTGCGATAGTCCAAG+GGG	0.732414	tig0020490:-77029	None:intergenic
TTAGGACGCATTATAGACCG+CGG	0.761510	tig0020490:+77249	Msa1382140:CDS
TGTGCAATTCAAAAGCCTGG+GGG	0.776295	tig0020490:+77982	Msa1382140:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTGAAAATTTTCTTATAAAT+AGG	-	tig0020490:79644-79663	None:intergenic	10.0%
!!	TAAAAAATAATAATTTACAG+GGG	-	tig0020490:79935-79954	None:intergenic	10.0%
!!!	TTCATATATTTTATAATCAT+TGG	+	tig0020490:80473-80492	Msa1382140:intron	10.0%
!!!	CCTCTTTAATTTTATTTTTT+CGG	+	tig0020490:76680-76699	Msa1382140:intron	15.0%
!!	AAATTTCTGATAAAATGATA+TGG	+	tig0020490:76781-76800	Msa1382140:intron	15.0%
!!	TTTAGATAAAATTGTTCAAT+TGG	+	tig0020490:79224-79243	Msa1382140:intron	15.0%
!!	AATTCTTTCTATAATAACTA+AGG	+	tig0020490:79456-79475	Msa1382140:intron	15.0%
!!	ATTCTTTCTATAATAACTAA+GGG	+	tig0020490:79457-79476	Msa1382140:intron	15.0%
!!	GTAATTTAACAAAACAATAA+GGG	+	tig0020490:79577-79596	Msa1382140:intron	15.0%
!!	AAAACAAAAAAAATTTACAG+GGG	-	tig0020490:79963-79982	None:intergenic	15.0%
!!	CAAAACAAAAAAAATTTACA+GGG	-	tig0020490:79964-79983	None:intergenic	15.0%
!!!	CAAAACAATTTTTTTTTACA+GGG	+	tig0020490:80069-80088	Msa1382140:intron	15.0%
!!!	AAAACAATTTTTTTTTACAG+GGG	+	tig0020490:80070-80089	Msa1382140:intron	15.0%
!!	TAAAAAAAAAAAGTTTACAG+AGG	+	tig0020490:80096-80115	Msa1382140:intron	15.0%
!!	AAAAAAAAAAAGTTTACAGA+GGG	+	tig0020490:80097-80116	Msa1382140:intron	15.0%
!!!	TTTAGTCAAAAAATAGATTT+TGG	-	tig0020490:80928-80947	None:intergenic	15.0%
!!!	AAAATCTATTTTTTGACTAA+AGG	+	tig0020490:80927-80946	Msa1382140:three_prime_UTR	15.0%
!!!	GTTTTAATTGTGGTAAATTA+GGG	-	tig0020490:76350-76369	None:intergenic	20.0%
!!!	TATTGATAACAGTTTAGATT+TGG	+	tig0020490:76565-76584	Msa1382140:intron	20.0%
!!	CCGAAAAAATAAAATTAAAG+AGG	-	tig0020490:76683-76702	None:intergenic	20.0%
!!!	AAAAGTTTTAGTTTCTGATA+GGG	+	tig0020490:76755-76774	Msa1382140:intron	20.0%
!!	ATATATACCAAAATCAAGAA+AGG	-	tig0020490:77844-77863	None:intergenic	20.0%
!!!	AAGCATGAAAATTTTCATAA+CGG	-	tig0020490:78365-78384	None:intergenic	20.0%
!!!	AATCAAAAGTTATTAGTTCT+TGG	-	tig0020490:78759-78778	None:intergenic	20.0%
!!!	ATTACTTTTATCTGTCATTT+TGG	+	tig0020490:78931-78950	Msa1382140:intron	20.0%
!!!	TTTTGATTAAGCATTTAAAC+TGG	+	tig0020490:79121-79140	Msa1382140:intron	20.0%
!!!	GATTTCAATTTTTGGAATTT+TGG	-	tig0020490:79178-79197	None:intergenic	20.0%
!!!	ATTTTATCTAAACAAATGAG+AGG	-	tig0020490:79216-79235	None:intergenic	20.0%
!!	TCTTAAAATGACAACTAAAA+GGG	-	tig0020490:79346-79365	None:intergenic	20.0%
!!	GTTATTATAGAAAGAATTGA+TGG	-	tig0020490:79454-79473	None:intergenic	20.0%
!!!	ATAACTAAGGGTAATTTTTT+TGG	+	tig0020490:79469-79488	Msa1382140:intron	20.0%
!!	GGTAATTTAACAAAACAATA+AGG	+	tig0020490:79576-79595	Msa1382140:intron	20.0%
!!!	AATTTTCTTATAAATAGGAC+CGG	-	tig0020490:79639-79658	None:intergenic	20.0%
!!!	TCTTTTCTTATATAAAAGAC+CGG	+	tig0020490:79878-79897	Msa1382140:intron	20.0%
!!	AAACAAAAAAAATTTACAGG+GGG	-	tig0020490:79962-79981	None:intergenic	20.0%
!!	CCAAAACAAAAAAAATTTAC+AGG	-	tig0020490:79965-79984	None:intergenic	20.0%
!!!	CCTGTAAATTTTTTTTGTTT+TGG	+	tig0020490:79962-79981	Msa1382140:intron	20.0%
!!	TTTCTGCAAAAAAAAAAAGT+TGG	+	tig0020490:80018-80037	Msa1382140:intron	20.0%
!!!	CCTGTAAAAAAAAATTGTTT+TGG	-	tig0020490:80071-80090	None:intergenic	20.0%
!!!	CCAAAACAATTTTTTTTTAC+AGG	+	tig0020490:80068-80087	Msa1382140:intron	20.0%
!!	AAAAAAAAAAGTTTACAGAG+GGG	+	tig0020490:80098-80117	Msa1382140:intron	20.0%
!!	TGCAACATTAATTATTGTTT+GGG	-	tig0020490:80167-80186	None:intergenic	20.0%
!!	ATGCAACATTAATTATTGTT+TGG	-	tig0020490:80168-80187	None:intergenic	20.0%
!!	AAAAAAACATCTTCCAATAA+TGG	+	tig0020490:80767-80786	Msa1382140:CDS	20.0%
!!	AAAAAACATCTTCCAATAAT+GGG	+	tig0020490:80768-80787	Msa1382140:CDS	20.0%
!!!	ATTTTCTAAGATAAGATACA+TGG	-	tig0020490:80831-80850	None:intergenic	20.0%
!!	GTATATTTGTTTGTTCATTT+AGG	+	tig0020490:80898-80917	Msa1382140:three_prime_UTR	20.0%
!!!	TTTGGATTAATCATTACTTT+TGG	-	tig0020490:81048-81067	None:intergenic	20.0%
!!!	GGTTTTAATTGTGGTAAATT+AGG	-	tig0020490:76351-76370	None:intergenic	25.0%
!!!	CTCTTCTTTATTTAACTTGT+CGG	+	tig0020490:76456-76475	Msa1382140:intron	25.0%
!!	ATTACAGCTATATTGTTTTC+CGG	+	tig0020490:76494-76513	Msa1382140:intron	25.0%
!!!	ATTCCATTCAGTTTTGAATT+TGG	+	tig0020490:76519-76538	Msa1382140:intron	25.0%
!!!	TTCCATTCAGTTTTGAATTT+GGG	+	tig0020490:76520-76539	Msa1382140:intron	25.0%
!	TTAAAGAGGAATTAACATCT+GGG	-	tig0020490:76669-76688	None:intergenic	25.0%
!	ATTAAAGAGGAATTAACATC+TGG	-	tig0020490:76670-76689	None:intergenic	25.0%
!!!	CAAAAGTTTTAGTTTCTGAT+AGG	+	tig0020490:76754-76773	Msa1382140:intron	25.0%
!!	GCAAGTTGAACATTAAATTT+GGG	+	tig0020490:77043-77062	Msa1382140:CDS	25.0%
!	GATAAACAAATCAGTAAGTT+GGG	-	tig0020490:77417-77436	None:intergenic	25.0%
!	AGATAAACAAATCAGTAAGT+TGG	-	tig0020490:77418-77437	None:intergenic	25.0%
!!	GATTTGTTTATCTACAACTA+AGG	+	tig0020490:77425-77444	Msa1382140:intron	25.0%
!	GATAATATGATATGTATTGC+AGG	+	tig0020490:77664-77683	Msa1382140:intron	25.0%
!	GAAGATGATGTATAATCAAA+GGG	-	tig0020490:77703-77722	None:intergenic	25.0%
!!!	TTGATTTTGGTATATATACG+AGG	+	tig0020490:77847-77866	Msa1382140:intron	25.0%
!!	TTTTTATGCGTAAAGATTTG+AGG	+	tig0020490:78104-78123	Msa1382140:intron	25.0%
!	GATTATGGAATGTATATTGT+TGG	+	tig0020490:78423-78442	Msa1382140:intron	25.0%
!!!	AATTTCTTTTGTTGTCTGAA+TGG	+	tig0020490:78448-78467	Msa1382140:intron	25.0%
!	CTATAAATAACAGTCTTTGA+GGG	-	tig0020490:78825-78844	None:intergenic	25.0%
!	ACTATAAATAACAGTCTTTG+AGG	-	tig0020490:78826-78845	None:intergenic	25.0%
!!	AGACTGTTATTTATAGTCAA+TGG	+	tig0020490:78829-78848	Msa1382140:intron	25.0%
!!!	TAGTCAATGGATTGATAATA+TGG	+	tig0020490:78842-78861	Msa1382140:intron	25.0%
!	TGATAATATGGAAACCTATA+TGG	+	tig0020490:78854-78873	Msa1382140:intron	25.0%
!	TATGTTGAGGTAAAAATACT+TGG	+	tig0020490:78976-78995	Msa1382140:intron	25.0%
!!	ACTGCAATGATTTCAATTTT+TGG	-	tig0020490:79186-79205	None:intergenic	25.0%
!	GTCTTAAAATGACAACTAAA+AGG	-	tig0020490:79347-79366	None:intergenic	25.0%
!!!	TAAATGAGTAAAGGTACTAT+AGG	-	tig0020490:79421-79440	None:intergenic	25.0%
!	ATGGGATAATAAATGAGTAA+AGG	-	tig0020490:79430-79449	None:intergenic	25.0%
!	ATAGAAAGAATTGATGGAAT+GGG	-	tig0020490:79448-79467	None:intergenic	25.0%
!	TATAGAAAGAATTGATGGAA+TGG	-	tig0020490:79449-79468	None:intergenic	25.0%
!	AACAAAACAATAAGGGTTAA+TGG	+	tig0020490:79584-79603	Msa1382140:intron	25.0%
!	TGTGACTCTTTCTTATAAAT+AGG	-	tig0020490:79680-79699	None:intergenic	25.0%
!	AAAAGACCAACATTAAATGA+GGG	-	tig0020490:79742-79761	None:intergenic	25.0%
!!!	AATGTTGGTCTTTTCAATAT+TGG	+	tig0020490:79748-79767	Msa1382140:intron	25.0%
!!!	ATACTTCACAAATTTTGATG+AGG	+	tig0020490:79786-79805	Msa1382140:intron	25.0%
!!!	TACTTCACAAATTTTGATGA+GGG	+	tig0020490:79787-79806	Msa1382140:intron	25.0%
!!	ATTTTTGAATGACCTATTAG+GGG	-	tig0020490:79993-80012	None:intergenic	25.0%
!!	CATTTTTGAATGACCTATTA+GGG	-	tig0020490:79994-80013	None:intergenic	25.0%
!!!	TCATTTTTGAATGACCTATT+AGG	-	tig0020490:79995-80014	None:intergenic	25.0%
!	ATCAACTTCTAGTAAACAAA+AGG	+	tig0020490:80601-80620	Msa1382140:CDS	25.0%
!	CATAACTTAATTCCCATTAT+TGG	-	tig0020490:80783-80802	None:intergenic	25.0%
!!!	TCTATTTTTTGACTAAAGGA+AGG	+	tig0020490:80931-80950	Msa1382140:three_prime_UTR	25.0%
!!!	CTATTTTTTGACTAAAGGAA+GGG	+	tig0020490:80932-80951	Msa1382140:three_prime_UTR	25.0%
!!!	AGGTTTTAGGGTTTTAATTG+TGG	-	tig0020490:76360-76379	None:intergenic	30.0%
!	TTCCTACAACAAAGGTTTTA+GGG	-	tig0020490:76372-76391	None:intergenic	30.0%
	ATCCCAAATTCAAAACTGAA+TGG	-	tig0020490:76525-76544	None:intergenic	30.0%
	AATACACGCATTTGTACAAA+AGG	-	tig0020490:76549-76568	None:intergenic	30.0%
	TGATAACAGTTTAGATTTGG+AGG	+	tig0020490:76568-76587	Msa1382140:intron	30.0%
	GATAACAGTTTAGATTTGGA+GGG	+	tig0020490:76569-76588	Msa1382140:intron	30.0%
!	CGCAAGTTGAACATTAAATT+TGG	+	tig0020490:77042-77061	Msa1382140:CDS	30.0%
	AGTTGAACATTAAATTTGGG+AGG	+	tig0020490:77046-77065	Msa1382140:CDS	30.0%
	GTTGAACATTAAATTTGGGA+GGG	+	tig0020490:77047-77066	Msa1382140:CDS	30.0%
	ATAGATAGTGTACCTTCATT+AGG	-	tig0020490:77159-77178	None:intergenic	30.0%
	GGAAGATGATGTATAATCAA+AGG	-	tig0020490:77704-77723	None:intergenic	30.0%
	TTCATTGCTGAAAAATCCAA+AGG	-	tig0020490:77738-77757	None:intergenic	30.0%
	TTTCAGCAATGAAAATCTTG+TGG	+	tig0020490:77745-77764	Msa1382140:CDS	30.0%
!	ATACAAGCCTTTCTTGATTT+TGG	+	tig0020490:77834-77853	Msa1382140:intron	30.0%
	TTGGTATATATACGAGGTAA+TGG	+	tig0020490:77853-77872	Msa1382140:intron	30.0%
!	GATTTTATATGATGCTCTCT+AGG	+	tig0020490:77882-77901	Msa1382140:intron	30.0%
	CTTAACACCAAACACAAAAT+GGG	-	tig0020490:78184-78203	None:intergenic	30.0%
	ATTGCATTATCAATTGCGTA+TGG	+	tig0020490:78401-78420	Msa1382140:intron	30.0%
!	TATCAATTGCGTATGGATTA+TGG	+	tig0020490:78408-78427	Msa1382140:intron	30.0%
!	TTGAAAAGCACAACAATGAA+AGG	+	tig0020490:78478-78497	Msa1382140:CDS	30.0%
!	TGAAAAGCACAACAATGAAA+GGG	+	tig0020490:78479-78498	Msa1382140:CDS	30.0%
	GGAAAACAAAATCAATCAGA+TGG	+	tig0020490:78573-78592	Msa1382140:CDS	30.0%
!	GGAAGCTCAAAGAATTTTAT+CGG	+	tig0020490:78702-78721	Msa1382140:CDS	30.0%
	TTGACATGTTTATGCCATAT+AGG	-	tig0020490:78871-78890	None:intergenic	30.0%
	AACATAGACAAAACTCAGAA+TGG	-	tig0020490:78962-78981	None:intergenic	30.0%
	CAAGATTATAGAGAAAGTGA+AGG	-	tig0020490:79088-79107	None:intergenic	30.0%
	CTTCACTTTCTCTATAATCT+TGG	+	tig0020490:79086-79105	Msa1382140:intron	30.0%
	TTGAAATCATTGCAGTACTA+AGG	+	tig0020490:79190-79209	Msa1382140:intron	30.0%
	GAATGTCTTCTAAACAGAAT+GGG	-	tig0020490:79271-79290	None:intergenic	30.0%
	TGAATGTCTTCTAAACAGAA+TGG	-	tig0020490:79272-79291	None:intergenic	30.0%
	AAATGACAACTAAAAGGGAA+CGG	-	tig0020490:79341-79360	None:intergenic	30.0%
!!!	ACTAAGGGTAATTTTTTTGG+TGG	+	tig0020490:79472-79491	Msa1382140:intron	30.0%
	GACAATGCATAATATATGCA+AGG	-	tig0020490:79520-79539	None:intergenic	30.0%
	TTCTAACCCTCATTTAATGT+TGG	+	tig0020490:79733-79752	Msa1382140:intron	30.0%
	GAAAAGACCAACATTAAATG+AGG	-	tig0020490:79743-79762	None:intergenic	30.0%
!!	TTGGTCTTTTCAATATTGGT+GGG	+	tig0020490:79752-79771	Msa1382140:intron	30.0%
!!!	GTCTTGGTTTTGATGATTTT+TGG	+	tig0020490:79853-79872	Msa1382140:intron	30.0%
	TTTCTTATATAAAAGACCGG+AGG	+	tig0020490:79881-79900	Msa1382140:intron	30.0%
	TTCTTATATAAAAGACCGGA+GGG	+	tig0020490:79882-79901	Msa1382140:intron	30.0%
	TAATAATTTACAGGGGAAAC+CGG	-	tig0020490:79928-79947	None:intergenic	30.0%
!	TTTTTGAATGACCTATTAGG+GGG	-	tig0020490:80041-80060	None:intergenic	30.0%
!	TGGTTTTTGAATGACCTATT+AGG	+	tig0020490:80038-80057	Msa1382140:intron	30.0%
!	GGTTTTTGAATGACCTATTA+GGG	+	tig0020490:80039-80058	Msa1382140:intron	30.0%
!	GTTTTTGAATGACCTATTAG+GGG	+	tig0020490:80040-80059	Msa1382140:intron	30.0%
!	TTTTTGAATGACCTATTAGG+GGG	+	tig0020490:80041-80060	Msa1382140:intron	30.0%
	TCTGTAATATAGGTCATTTC+CGG	-	tig0020490:80127-80146	None:intergenic	30.0%
	GAAATGACCTATATTACAGA+GGG	+	tig0020490:80127-80146	Msa1382140:intron	30.0%
	TTCAAATGCGATAACGAAAA+AGG	+	tig0020490:80239-80258	Msa1382140:intron	30.0%
	GATAACGAAAAAGGAACAAA+GGG	+	tig0020490:80248-80267	Msa1382140:intron	30.0%
	TTTATGGCTGTGAAAAGTAA+TGG	-	tig0020490:80303-80322	None:intergenic	30.0%
!!	ATGAATCAGGTTGAGATTTA+TGG	-	tig0020490:80319-80338	None:intergenic	30.0%
	ACCTGATTCATTATTCTACA+AGG	+	tig0020490:80328-80347	Msa1382140:intron	30.0%
	TCCTTGTAGAATAATGAATC+AGG	-	tig0020490:80332-80351	None:intergenic	30.0%
	TGTACTATTGTAAAATGAGC+AGG	+	tig0020490:80575-80594	Msa1382140:intron	30.0%
	TAAACAAAAGGATTCAAGAC+AGG	+	tig0020490:80613-80632	Msa1382140:CDS	30.0%
!	TTTTTCTTCCTCTTGTTCTT+GGG	-	tig0020490:80752-80771	None:intergenic	30.0%
!!!	TTTTTTCTTCCTCTTGTTCT+TGG	-	tig0020490:80753-80772	None:intergenic	30.0%
!	TCTAAGATAAGATACATGGT+CGG	-	tig0020490:80827-80846	None:intergenic	30.0%
	CAAAATTGACAAAGCATGTT+TGG	-	tig0020490:81022-81041	None:intergenic	30.0%
!	AACCCTAAAACCTTTGTTGT+AGG	+	tig0020490:76367-76386	Msa1382140:five_prime_UTR	35.0%
!	CTTCCTACAACAAAGGTTTT+AGG	-	tig0020490:76373-76392	None:intergenic	35.0%
	TCAAAACTGAATGGAATCAC+CGG	-	tig0020490:76516-76535	None:intergenic	35.0%
!	AGCAGAGATTAGCTAATTGT+TGG	+	tig0020490:76935-76954	Msa1382140:CDS	35.0%
!	AGAGATTAGCTAATTGTTGG+CGG	+	tig0020490:76938-76957	Msa1382140:CDS	35.0%
	ATTAAATTTGGGAGGGATGA+TGG	+	tig0020490:77054-77073	Msa1382140:CDS	35.0%
	TTAAATTTGGGAGGGATGAT+GGG	+	tig0020490:77055-77074	Msa1382140:CDS	35.0%
	TCATTAGGCCTATCTTTGTA+AGG	-	tig0020490:77144-77163	None:intergenic	35.0%
	TACAAAGATAGGCCTAATGA+AGG	+	tig0020490:77144-77163	Msa1382140:CDS	35.0%
	TATAATGCGTCCTAACTCAA+CGG	-	tig0020490:77244-77263	None:intergenic	35.0%
	GGAAGCTAAATAGAAAACAG+GGG	-	tig0020490:77632-77651	None:intergenic	35.0%
	CGGAAGCTAAATAGAAAACA+GGG	-	tig0020490:77633-77652	None:intergenic	35.0%
	CATATTATCGATAACTGCTG+CGG	-	tig0020490:77653-77672	None:intergenic	35.0%
	TGATGTATAATCAAAGGGAG+TGG	-	tig0020490:77698-77717	None:intergenic	35.0%
	ATATGATGCTCTCTAGGTAT+TGG	+	tig0020490:77888-77907	Msa1382140:intron	35.0%
	ACTGCAACACTTAATGCAAA+TGG	+	tig0020490:77952-77971	Msa1382140:CDS	35.0%
!	AAACTTGCTCATGTTAAAGC+TGG	+	tig0020490:78042-78061	Msa1382140:CDS	35.0%
	ACTCACTGCATCATTTATCT+TGG	-	tig0020490:78079-78098	None:intergenic	35.0%
!	ATCATCTCCCATTTTGTGTT+TGG	+	tig0020490:78174-78193	Msa1382140:intron	35.0%
	GCTTAACACCAAACACAAAA+TGG	-	tig0020490:78185-78204	None:intergenic	35.0%
	TCTTCTGCTTATAAGTCTTC+TGG	+	tig0020490:78240-78259	Msa1382140:intron	35.0%
!	TTTGTTGTCTGAATGGATGT+AGG	+	tig0020490:78455-78474	Msa1382140:intron	35.0%
	CAATCAGATGGTGATAAAGA+AGG	+	tig0020490:78585-78604	Msa1382140:CDS	35.0%
	GAAAGGCGAGACAAATTTAA+TGG	+	tig0020490:78632-78651	Msa1382140:CDS	35.0%
!	AGCTCAAAGAATTTTATCGG+TGG	+	tig0020490:78705-78724	Msa1382140:CDS	35.0%
!	TTTGATAGTCTAGCTGTTTC+TGG	+	tig0020490:78798-78817	Msa1382140:intron	35.0%
!!	TCTGAGTTTTGTCTATGTTG+AGG	+	tig0020490:78963-78982	Msa1382140:intron	35.0%
	GAATTGACACAATCTGAGTA+GGG	-	tig0020490:79021-79040	None:intergenic	35.0%
	TGAATTGACACAATCTGAGT+AGG	-	tig0020490:79022-79041	None:intergenic	35.0%
!!!	GAGGGAGTATTGTTTTACAT+GGG	-	tig0020490:79319-79338	None:intergenic	35.0%
!!!	GTAATTTTTTTGGTGGTGTC+CGG	+	tig0020490:79479-79498	Msa1382140:intron	35.0%
!!!	TAATTTTTTTGGTGGTGTCC+GGG	+	tig0020490:79480-79499	Msa1382140:intron	35.0%
	TGCATAATATATGCAAGGTC+CGG	-	tig0020490:79515-79534	None:intergenic	35.0%
	TTCTTATAAATAGGACCGGA+GGG	-	tig0020490:79635-79654	None:intergenic	35.0%
	TTTCTTATAAATAGGACCGG+AGG	-	tig0020490:79636-79655	None:intergenic	35.0%
!!!	GTTGGTCTTTTCAATATTGG+TGG	+	tig0020490:79751-79770	Msa1382140:intron	35.0%
	GCAACAACTAATGATTGTCT+TGG	+	tig0020490:79837-79856	Msa1382140:intron	35.0%
	GGAAATGACCTATATTACAG+AGG	+	tig0020490:80126-80145	Msa1382140:intron	35.0%
	TGCTTTACCCTCTGTAATAT+AGG	-	tig0020490:80137-80156	None:intergenic	35.0%
	CGATAACGAAAAAGGAACAA+AGG	+	tig0020490:80247-80266	Msa1382140:intron	35.0%
!	TGTGAGGTTTTCGTTTAGAT+AGG	+	tig0020490:80355-80374	Msa1382140:intron	35.0%
!	GTTGATTTCATTTCTGCGTT+TGG	+	tig0020490:80394-80413	Msa1382140:intron	35.0%
	ATTTCATTTCTGCGTTTGGT+TGG	+	tig0020490:80398-80417	Msa1382140:intron	35.0%
	TAATGAAGGTAAGACTCTGA+AGG	+	tig0020490:80715-80734	Msa1382140:CDS	35.0%
	TCTTAGAAAATGCGATAGAC+TGG	+	tig0020490:80840-80859	Msa1382140:three_prime_UTR	35.0%
	CTTAGAAAATGCGATAGACT+GGG	+	tig0020490:80841-80860	Msa1382140:three_prime_UTR	35.0%
!	AATGACATTTTGCGCTTTCT+GGG	-	tig0020490:80977-80996	None:intergenic	35.0%
!	AAATGACATTTTGCGCTTTC+TGG	-	tig0020490:80978-80997	None:intergenic	35.0%
!	ATCTGGGTAGCACTGAATTA+GGG	-	tig0020490:76653-76672	None:intergenic	40.0%
	TGTTAAGTAGAGAGAGAGAG+AGG	+	tig0020490:76907-76926	Msa1382140:intron	40.0%
	TTCAACTTGCGATAGTCCAA+GGG	-	tig0020490:77033-77052	None:intergenic	40.0%
	TTGTGCAGCCTTACAAAGAT+AGG	+	tig0020490:77133-77152	Msa1382140:CDS	40.0%
	TTCTTTCTGCCAAACTTGTC+TGG	+	tig0020490:77313-77332	Msa1382140:CDS	40.0%
	TCTTTCTGCCAAACTTGTCT+GGG	+	tig0020490:77314-77333	Msa1382140:CDS	40.0%
	TATGTGGATGTCAATGCGAA+TGG	-	tig0020490:77340-77359	None:intergenic	40.0%
	ATCCACATACTAGACAATGC+AGG	+	tig0020490:77351-77370	Msa1382140:CDS	40.0%
	TCCACATACTAGACAATGCA+GGG	+	tig0020490:77352-77371	Msa1382140:CDS	40.0%
!	CAGTAAGTTGGGTAAGAAAG+AGG	-	tig0020490:77406-77425	None:intergenic	40.0%
	TGCTGCAAATATTGCTGCAT+TGG	+	tig0020490:77492-77511	Msa1382140:CDS	40.0%
!	CATCTCTGAAGACATTCAGA+AGG	+	tig0020490:77515-77534	Msa1382140:CDS	40.0%
	AAATAGAAAACAGGGGCGAA+AGG	-	tig0020490:77625-77644	None:intergenic	40.0%
	GCGGAAGCTAAATAGAAAAC+AGG	-	tig0020490:77634-77653	None:intergenic	40.0%
	ATGAAGAGGCTGTAATGACT+GGG	+	tig0020490:77923-77942	Msa1382140:CDS	40.0%
	TGTGTGCAATTCAAAAGCCT+GGG	+	tig0020490:77980-77999	Msa1382140:CDS	40.0%
!!	CATAGGCATTGAAAGAGTGA+GGG	-	tig0020490:78130-78149	None:intergenic	40.0%
!!	TCATAGGCATTGAAAGAGTG+AGG	-	tig0020490:78131-78150	None:intergenic	40.0%
	AGATGCATCGTTCTGTTCAT+AGG	-	tig0020490:78147-78166	None:intergenic	40.0%
	TGCAATGAAAGGCAAACAGA+AGG	-	tig0020490:78301-78320	None:intergenic	40.0%
!!!	ATTTTGTTTTCCCCCTAACG+TGG	-	tig0020490:78565-78584	None:intergenic	40.0%
	GAATGTGATGCCACATCATT+AGG	+	tig0020490:78654-78673	Msa1382140:CDS	40.0%
!	TACTTGGTCTTTCACTTCTC+AGG	+	tig0020490:78992-79011	Msa1382140:intron	40.0%
!	ACTTGGTCTTTCACTTCTCA+GGG	+	tig0020490:78993-79012	Msa1382140:intron	40.0%
	CACTCTATTTAGCTGCACTT+AGG	+	tig0020490:79145-79164	Msa1382140:intron	40.0%
	TGTCTTCTAAACAGAATGGG+TGG	-	tig0020490:79268-79287	None:intergenic	40.0%
!!!	GGAGGGAGTATTGTTTTACA+TGG	-	tig0020490:79320-79339	None:intergenic	40.0%
!!!	AATTTTTTTGGTGGTGTCCG+GGG	+	tig0020490:79481-79500	Msa1382140:intron	40.0%
	CATAATATATGCAAGGTCCG+GGG	-	tig0020490:79513-79532	None:intergenic	40.0%
	GCATAATATATGCAAGGTCC+GGG	-	tig0020490:79514-79533	None:intergenic	40.0%
!	AGAGCTTAACTCAGTTGGTA+AGG	-	tig0020490:79542-79561	None:intergenic	40.0%
	TACCAACTGAGTTAAGCTCT+TGG	+	tig0020490:79542-79561	Msa1382140:intron	40.0%
	TAAGCTCTTGGAGACAACTA+AGG	+	tig0020490:79554-79573	Msa1382140:intron	40.0%
	AAGCTCTTGGAGACAACTAA+GGG	+	tig0020490:79555-79574	Msa1382140:intron	40.0%
!	ACCGGAGGGAGTATATTATA+GGG	-	tig0020490:79621-79640	None:intergenic	40.0%
!!	GTAGGTCATTGACTCATTTC+CGG	+	tig0020490:79906-79925	Msa1382140:intron	40.0%
!!!	GTTTTGGAATACCCCCTAAT+AGG	+	tig0020490:79978-79997	Msa1382140:intron	40.0%
!!!	GTTTTGGAATACCCCCTAAT+AGG	-	tig0020490:79978-79997	None:intergenic	40.0%
	AAAGTTTACAGAGGGGAAAC+CGG	+	tig0020490:80105-80124	Msa1382140:intron	40.0%
	GAACAAAGGGAGTAATGTAG+AGG	+	tig0020490:80261-80280	Msa1382140:intron	40.0%
!	TATTCTACAAGGAGTGTGTG+AGG	+	tig0020490:80339-80358	Msa1382140:intron	40.0%
	CCAACTGCTTCCTACAACAA+AGG	-	tig0020490:76380-76399	None:intergenic	45.0%
!	CCTTTGTTGTAGGAAGCAGT+TGG	+	tig0020490:76377-76396	Msa1382140:five_prime_UTR	45.0%
!	TTGGAGTTGCACCTTTTCGT+CGG	+	tig0020490:76396-76415	Msa1382140:five_prime_UTR	45.0%
!	TGTTTCTGCTTCCGACGAAA+AGG	-	tig0020490:76410-76429	None:intergenic	45.0%
!	CATCTGGGTAGCACTGAATT+AGG	-	tig0020490:76654-76673	None:intergenic	45.0%
	TCTTCTATCAGAGCTTCGAG+TGG	+	tig0020490:76996-77015	Msa1382140:CDS	45.0%
	TCAACTTGCGATAGTCCAAG+GGG	-	tig0020490:77032-77051	None:intergenic	45.0%
	GTTCAACTTGCGATAGTCCA+AGG	-	tig0020490:77034-77053	None:intergenic	45.0%
	CTTCACTGAATTCTCTCCCA+TGG	+	tig0020490:77179-77198	Msa1382140:CDS	45.0%
	TCAAAGGAAGGATCAGCCAT+GGG	-	tig0020490:77198-77217	None:intergenic	45.0%
	TTAGGACGCATTATAGACCG+CGG	+	tig0020490:77249-77268	Msa1382140:CDS	45.0%
	GCATTATAGACCGCGGTTTA+CGG	+	tig0020490:77256-77275	Msa1382140:CDS	45.0%
	CATTATAGACCGCGGTTTAC+GGG	+	tig0020490:77257-77276	Msa1382140:CDS	45.0%
	ACCCTGCATTGTCTAGTATG+TGG	-	tig0020490:77356-77375	None:intergenic	45.0%
	AAGGTCACGCTGTTAAACTG+AGG	-	tig0020490:77606-77625	None:intergenic	45.0%
	AATCCAAAGGTGACTGCAAC+TGG	-	tig0020490:77725-77744	None:intergenic	45.0%
	ACAGCCTCTTCATGGTATGT+CGG	-	tig0020490:77916-77935	None:intergenic	45.0%
	CAGTCATTACAGCCTCTTCA+TGG	-	tig0020490:77924-77943	None:intergenic	45.0%
	CATGAAGAGGCTGTAATGAC+TGG	+	tig0020490:77922-77941	Msa1382140:CDS	45.0%
	GTGTGTGCAATTCAAAAGCC+TGG	+	tig0020490:77979-77998	Msa1382140:CDS	45.0%
	GTGTGCAATTCAAAAGCCTG+GGG	+	tig0020490:77981-78000	Msa1382140:CDS	45.0%
	TGTGCAATTCAAAAGCCTGG+GGG	+	tig0020490:77982-78001	Msa1382140:CDS	45.0%
	GCACACTTCACTGCAATGAA+AGG	-	tig0020490:78312-78331	None:intergenic	45.0%
	ACGACATTCTTCCTCTGTTG+CGG	+	tig0020490:78518-78537	Msa1382140:CDS	45.0%
	CTAGACCAGTTGAAGCTGAA+AGG	+	tig0020490:78615-78634	Msa1382140:CDS	45.0%
	CTGCACTTGTCCTAATGATG+TGG	-	tig0020490:78667-78686	None:intergenic	45.0%
	ACAAGTGCAGAGTAGCAAGA+AGG	+	tig0020490:78677-78696	Msa1382140:CDS	45.0%
!	AAAGCTTCTCTAGCTTCTCG+TGG	+	tig0020490:79051-79070	Msa1382140:CDS	45.0%
	GACAACTAAAAGGGAACGGA+GGG	-	tig0020490:79337-79356	None:intergenic	45.0%
	TGACAACTAAAAGGGAACGG+AGG	-	tig0020490:79338-79357	None:intergenic	45.0%
	CTCCAAGAGCTTAACTCAGT+TGG	-	tig0020490:79547-79566	None:intergenic	45.0%
!	GAGGGAGTATATTATAGGGG+GGG	-	tig0020490:79617-79636	None:intergenic	45.0%
!	GGAGGGAGTATATTATAGGG+GGG	-	tig0020490:79618-79637	None:intergenic	45.0%
!	CGGAGGGAGTATATTATAGG+GGG	-	tig0020490:79619-79638	None:intergenic	45.0%
!	CCGGAGGGAGTATATTATAG+GGG	-	tig0020490:79620-79639	None:intergenic	45.0%
	CCCCTATAATATACTCCCTC+CGG	+	tig0020490:79617-79636	Msa1382140:intron	45.0%
!	GACCGGAGGGAGTATATTAT+AGG	-	tig0020490:79622-79641	None:intergenic	45.0%
	TATAAAAGACCGGAGGGAGT+AGG	+	tig0020490:79888-79907	Msa1382140:intron	45.0%
	GCAGTTAGAGCAGTGTCAAT+TGG	-	tig0020490:80686-80705	None:intergenic	45.0%
	ATTGACACTGCTCTAACTGC+TGG	+	tig0020490:80686-80705	Msa1382140:CDS	45.0%
	TTGACACTGCTCTAACTGCT+GGG	+	tig0020490:80687-80706	Msa1382140:CDS	45.0%
!!!	AAAATTTTCAAAAAAAATTT+TGG	+	tig0020490:79653-79672	Msa1382140:intron	5.0%
!!	ATAAAAAATAATAATTTACA+GGG	-	tig0020490:79936-79955	None:intergenic	5.0%
!!	AATAAAAAATAATAATTTAC+AGG	-	tig0020490:79937-79956	None:intergenic	5.0%
	AGTAGAGAGAGAGAGAGGCA+TGG	+	tig0020490:76912-76931	Msa1382140:intron	50.0%
	CTATCAGAGCTTCGAGTGGA+TGG	+	tig0020490:77000-77019	Msa1382140:CDS	50.0%
	TGTCTCGCCCAATTGGATCT+CGG	-	tig0020490:77085-77104	None:intergenic	50.0%
	CTCAAAGGAAGGATCAGCCA+TGG	-	tig0020490:77199-77218	None:intergenic	50.0%
	AACTCAACGGCAGATTCTCC+AGG	-	tig0020490:77231-77250	None:intergenic	50.0%
	GGAGAATCTGCCGTTGAGTT+AGG	+	tig0020490:77231-77250	Msa1382140:CDS	50.0%
	CTCTACTTTCCCGTAAACCG+CGG	-	tig0020490:77269-77288	None:intergenic	50.0%
	GCAGAGCGATTCAGTGTCAA+TGG	-	tig0020490:77292-77311	None:intergenic	50.0%
	AGAAGGCCTGAATGCTCGTT+GGG	+	tig0020490:77532-77551	Msa1382140:CDS	50.0%
	AGTTGTAGTGCATCCTCCTG+AGG	+	tig0020490:77573-77592	Msa1382140:CDS	50.0%
	AAACTGAGGAAGCTGACCTC+AGG	-	tig0020490:77592-77611	None:intergenic	50.0%
	CTTCCAGTTGCAGTCACCTT+TGG	+	tig0020490:77719-77738	Msa1382140:CDS	50.0%
	GAGAGAGAGAGAGAGAGAGA+GGG	-	tig0020490:77804-77823	None:intergenic	50.0%
	AGAGAGAGAGAGAGAGAGAG+AGG	-	tig0020490:77803-77822	None:intergenic	50.0%
	GGATCCGACATACCATGAAG+AGG	+	tig0020490:77909-77928	Msa1382140:CDS	50.0%
	GTGCAATTCAAAAGCCTGGG+GGG	+	tig0020490:77983-78002	Msa1382140:CDS	50.0%
	ACATTCTTCCTCTGTTGCGG+TGG	+	tig0020490:78521-78540	Msa1382140:CDS	50.0%
	ACATACATCCACCGCAACAG+AGG	-	tig0020490:78532-78551	None:intergenic	50.0%
	TCTGTTGCGGTGGATGTATG+TGG	+	tig0020490:78531-78550	Msa1382140:CDS	50.0%
	TCTCGCCTTTCAGCTTCAAC+TGG	-	tig0020490:78623-78642	None:intergenic	50.0%
	GTGCAGAGTAGCAAGAAGGA+TGG	+	tig0020490:78681-78700	Msa1382140:CDS	50.0%
	TGACACCTTACCAGCTTGAG+GGG	-	tig0020490:78731-78750	None:intergenic	50.0%
	CTGACACCTTACCAGCTTGA+GGG	-	tig0020490:78732-78751	None:intergenic	50.0%
	ACTGACACCTTACCAGCTTG+AGG	-	tig0020490:78733-78752	None:intergenic	50.0%
	AGTCAATGACCTACTCCCTC+CGG	-	tig0020490:79900-79919	None:intergenic	50.0%
!!	ATTTCCTGCGCTGGTTCTTC+TGG	-	tig0020490:80647-80666	None:intergenic	50.0%
	ACTGTCTTGATTTCCTGCGC+TGG	-	tig0020490:80656-80675	None:intergenic	50.0%
	ACTGCTGGGCAGAGTAATGA+AGG	+	tig0020490:80701-80720	Msa1382140:CDS	50.0%
	CTGTCAAGCCCAAGAACAAG+AGG	+	tig0020490:80741-80760	Msa1382140:CDS	50.0%
	CAGAGCTTCGAGTGGATGGT+CGG	+	tig0020490:77004-77023	Msa1382140:CDS	55.0%
	AGAGCTTCGAGTGGATGGTC+GGG	+	tig0020490:77005-77024	Msa1382140:CDS	55.0%
	TGGGTCTGCCGAGATCCAAT+TGG	+	tig0020490:77074-77093	Msa1382140:CDS	55.0%
	GGGTCTGCCGAGATCCAATT+GGG	+	tig0020490:77075-77094	Msa1382140:CDS	55.0%
	TGACACGTGTCTCGCCCAAT+TGG	-	tig0020490:77092-77111	None:intergenic	55.0%
	GCTGATCCTTCCTTTGAGCC+TGG	+	tig0020490:77201-77220	Msa1382140:CDS	55.0%
	CAACGGCAGATTCTCCAGGA+CGG	-	tig0020490:77227-77246	None:intergenic	55.0%
	GCGAATGGCCCAGACAAGTT+TGG	-	tig0020490:77325-77344	None:intergenic	55.0%
	CAGAAGGCCTGAATGCTCGT+TGG	+	tig0020490:77531-77550	Msa1382140:CDS	55.0%
	GAAGGCCTGAATGCTCGTTG+GGG	+	tig0020490:77533-77552	Msa1382140:CDS	55.0%
	AAGGCCTGAATGCTCGTTGG+GGG	+	tig0020490:77534-77553	Msa1382140:CDS	55.0%
	GAGAGAGAGAGAGAGAGGGA+GGG	-	tig0020490:77800-77819	None:intergenic	55.0%
	AGAGAGAGAGAGAGAGAGGG+AGG	-	tig0020490:77801-77820	None:intergenic	55.0%
	AATTCAAAAGCCTGGGGGGC+AGG	+	tig0020490:77987-78006	Msa1382140:CDS	55.0%
	ATTCAAAAGCCTGGGGGGCA+GGG	+	tig0020490:77988-78007	Msa1382140:CDS	55.0%
	TGTGGAACCACTGCCACGTT+AGG	+	tig0020490:78549-78568	Msa1382140:CDS	55.0%
	GTGGAACCACTGCCACGTTA+GGG	+	tig0020490:78550-78569	Msa1382140:CDS	55.0%
	TGGAACCACTGCCACGTTAG+GGG	+	tig0020490:78551-78570	Msa1382140:CDS	55.0%
!	TTTTCCCCCTAACGTGGCAG+TGG	-	tig0020490:78559-78578	None:intergenic	55.0%
	TAAGCCAGAAGAACCAGCGC+AGG	+	tig0020490:80640-80659	Msa1382140:CDS	55.0%
	GAGCTTCGAGTGGATGGTCG+GGG	+	tig0020490:77006-77025	Msa1382140:CDS	60.0%
	AGGCCTGAATGCTCGTTGGG+GGG	+	tig0020490:77535-77554	Msa1382140:CDS	60.0%
	TCTCCCCCCAACGAGCATTC+AGG	-	tig0020490:77541-77560	None:intergenic	60.0%
	TGAATGCTCGTTGGGGGGAG+AGG	+	tig0020490:77540-77559	Msa1382140:CDS	60.0%
	CTGAGGAAGCTGACCTCAGG+AGG	-	tig0020490:77589-77608	None:intergenic	60.0%
	GAGAGAGAGAGGGAGGGAGA+GGG	-	tig0020490:77794-77813	None:intergenic	60.0%
	AGAGAGAGAGAGGGAGGGAG+AGG	-	tig0020490:77795-77814	None:intergenic	60.0%
	GGAACCACTGCCACGTTAGG+GGG	+	tig0020490:78552-78571	Msa1382140:CDS	60.0%
	TTATCGGTGGCCCCTCAAGC+TGG	+	tig0020490:78718-78737	Msa1382140:CDS	60.0%
	GGACGGCCAGGCTCAAAGGA+AGG	-	tig0020490:77210-77229	None:intergenic	65.0%
	TCCTTTGAGCCTGGCCGTCC+TGG	+	tig0020490:77210-77229	Msa1382140:CDS	65.0%
	TCCAGGACGGCCAGGCTCAA+AGG	-	tig0020490:77214-77233	None:intergenic	65.0%
	GCAGATTCTCCAGGACGGCC+AGG	-	tig0020490:77222-77241	None:intergenic	65.0%
	TGCTCGTTGGGGGGAGAGGA+TGG	+	tig0020490:77544-77563	Msa1382140:CDS	65.0%
	AGAGAGGGAGGGAGAGGGAG+GGG	-	tig0020490:77789-77808	None:intergenic	65.0%
	GAGAGAGGGAGGGAGAGGGA+GGG	-	tig0020490:77790-77809	None:intergenic	65.0%
	AGAGAGAGGGAGGGAGAGGG+AGG	-	tig0020490:77791-77810	None:intergenic	65.0%
	TGAAAGACACCCTGCCCCCC+AGG	-	tig0020490:78000-78019	None:intergenic	65.0%
	GGTGGCCCCTCAAGCTGGTA+AGG	+	tig0020490:78723-78742	Msa1382140:intron	65.0%
	AAGGTCCGGGGTTCGAACCC+CGG	-	tig0020490:79501-79520	None:intergenic	65.0%
	AGTGGATGGTCGGGGCCCCT+TGG	+	tig0020490:77014-77033	Msa1382140:CDS	70.0%
	GAGAGGGAGGGAGAGGGAGG+GGG	-	tig0020490:77788-77807	None:intergenic	70.0%
	GGTGTCCGGGGTTCGAACCC+CGG	+	tig0020490:79493-79512	Msa1382140:intron	70.0%

Chromosome	Type	Strat	End	Strand	Name
tig0020490	gene	76298	81079	76298	ID=Msa1382140;Name=Msa1382140
tig0020490	mRNA	76298	81079	76298	ID=Msa1382140-mRNA-1;Parent=Msa1382140;Name=Msa1382140-mRNA-1;_AED=0.07;_eAED=0.07;_QI=150\|1\|1\|1\|0.85\|0.75\|8\|283\|449
tig0020490	exon	76298	76433	76298	ID=Msa1382140-mRNA-1:exon:7923;Parent=Msa1382140-mRNA-1
tig0020490	exon	76917	77373	76917	ID=Msa1382140-mRNA-1:exon:7924;Parent=Msa1382140-mRNA-1
tig0020490	exon	77480	77594	77480	ID=Msa1382140-mRNA-1:exon:7925;Parent=Msa1382140-mRNA-1
tig0020490	exon	77686	77766	77686	ID=Msa1382140-mRNA-1:exon:7926;Parent=Msa1382140-mRNA-1
tig0020490	exon	77904	78092	77904	ID=Msa1382140-mRNA-1:exon:7927;Parent=Msa1382140-mRNA-1
tig0020490	exon	78477	78739	78477	ID=Msa1382140-mRNA-1:exon:7928;Parent=Msa1382140-mRNA-1
tig0020490	exon	79014	79072	79014	ID=Msa1382140-mRNA-1:exon:7929;Parent=Msa1382140-mRNA-1
tig0020490	exon	80597	81079	80597	ID=Msa1382140-mRNA-1:exon:7930;Parent=Msa1382140-mRNA-1
tig0020490	five_prime_UTR	76298	76433	76298	ID=Msa1382140-mRNA-1:five_prime_utr;Parent=Msa1382140-mRNA-1
tig0020490	five_prime_UTR	76917	76930	76917	ID=Msa1382140-mRNA-1:five_prime_utr;Parent=Msa1382140-mRNA-1
tig0020490	CDS	76931	77373	76931	ID=Msa1382140-mRNA-1:cds;Parent=Msa1382140-mRNA-1
tig0020490	CDS	77480	77594	77480	ID=Msa1382140-mRNA-1:cds;Parent=Msa1382140-mRNA-1
tig0020490	CDS	77686	77766	77686	ID=Msa1382140-mRNA-1:cds;Parent=Msa1382140-mRNA-1
tig0020490	CDS	77904	78092	77904	ID=Msa1382140-mRNA-1:cds;Parent=Msa1382140-mRNA-1
tig0020490	CDS	78477	78739	78477	ID=Msa1382140-mRNA-1:cds;Parent=Msa1382140-mRNA-1
tig0020490	CDS	79014	79072	79014	ID=Msa1382140-mRNA-1:cds;Parent=Msa1382140-mRNA-1
tig0020490	CDS	80597	80796	80597	ID=Msa1382140-mRNA-1:cds;Parent=Msa1382140-mRNA-1
tig0020490	three_prime_UTR	80797	81079	80797	ID=Msa1382140-mRNA-1:three_prime_utr;Parent=Msa1382140-mRNA-1

Gene Sequence

>Msa1382140

ATGGAGCAGAGATTAGCTAATTGTTGGCGGTTGACAGTTAACGAAAAGAAATTCATTGAAACTGCTCTTCTATCAGAGCTTCGAGTGGATGGTCGGGGCCCCTTGGACTATCGCAAGTTGAACATTAAATTTGGGAGGGATGATGGGTCTGCCGAGATCCAATTGGGCGAGACACGTGTCATGAGTTTTGTGACTGCTCAACTTGTGCAGCCTTACAAAGATAGGCCTAATGAAGGTACACTATCTATCTTCACTGAATTCTCTCCCATGGCTGATCCTTCCTTTGAGCCTGGCCGTCCTGGAGAATCTGCCGTTGAGTTAGGACGCATTATAGACCGCGGTTTACGGGAAAGTAGAGCCATTGACACTGAATCGCTCTGCATTCTTTCTGCCAAACTTGTCTGGGCCATTCGCATTGACATCCACATACTAGACAATGCAGGAAATCTTGTTGATGCTGCAAATATTGCTGCATTGGCATCTCTGAAGACATTCAGAAGGCCTGAATGCTCGTTGGGGGGAGAGGATGGTCAACAAGTTGTAGTGCATCCTCCTGAGGTGCGCGAGCCACTCCCTTTGATTATACATCATCTTCCAGTTGCAGTCACCTTTGGATTTTTCAGCAATGAAAATCTTGTGGTATTGGATCCGACATACCATGAAGAGGCTGTAATGACTGGGCGCATGACTGCAACACTTAATGCAAATGGTGATGTGTGTGCAATTCAAAAGCCTGGGGGGCAGGGTGTCTTTCAACGAGTTATCATGCATTGCTTGAAACTTGCTCATGTTAAAGCTGGTGATATTACAGCCAAGATAAATGATGCAGTTGAAAAGCACAACAATGAAAGGGCACTACAGAAGATTAAACGACATTCTTCCTCTGTTGCGGTGGATGTATGTGGAACCACTGCCACGTTAGGGGGAAAACAAAATCAATCAGATGGTGATAAAGAAGGTAGTCATCTAGACCAGTTGAAGCTGAAAGGCGAGACAAATTTAATGGAATGTGATGCCACATCATTAGGACAAGTGCAGAGTAGCAAGAAGGATGGAAGCTCAAAGAATTTTATCGGTGGCCCCTCAAGCTGGGATCCCTACTCAGATTGTGTCAATTCAGATCTTCTAAAAGCTTCTCTAGCTTCTCGTGGACAATCAACTTCTAGTAAACAAAAGGATTCAAGACAGGAGACTAAGCCAGAAGAACCAGCGCAGGAAATCAAGACAGTTTCTGCACCAATTGACACTGCTCTAACTGCTGGGCAGAGTAATGAAGGTAAGACTCTGAAGGATGCTGTCAAGCCCAAGAACAAGAGGAAGAAAAAAACATCTTCCAATAATGGGAATTAA

Protein sequence

>Msa1382140

MEQRLANCWRLTVNEKKFIETALLSELRVDGRGPLDYRKLNIKFGRDDGSAEIQLGETRVMSFVTAQLVQPYKDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAIDTESLCILSAKLVWAIRIDIHILDNAGNLVDAANIAALASLKTFRRPECSLGGEDGQQVVVHPPEVREPLPLIIHHLPVAVTFGFFSNENLVVLDPTYHEEAVMTGRMTATLNANGDVCAIQKPGGQGVFQRVIMHCLKLAHVKAGDITAKINDAVEKHNNERALQKIKRHSSSVAVDVCGTTATLGGKQNQSDGDKEGSHLDQLKLKGETNLMECDATSLGQVQSSKKDGSSKNFIGGPSSWDPYSDCVNSDLLKASLASRGQSTSSKQKDSRQETKPEEPAQEIKTVSAPIDTALTAGQSNEGKTLKDAVKPKNKRKKKTSSNNGN*