AlfalfaGEDB | Msa0379650

M. sativa cultivar zhongmu-4 / Msa0379650

KEGG: -
GO: -
PFAM: PF14369.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379650	XP_003602888.1	98.058	309	6	0	119	427	1	309	0.0	632

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379650	sp\|Q9LRH6\|GAT25_ARATH	63.021	192	68	3	187	376	81	271	3.36e-74	237

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379650	G7J4K3	98.058	309	6	0	119	427	1	309	0.0	632

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TFs/TRs:

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Gene ID	Type	Classification
Msa0379650	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0379650	0.800899	1.160622e-48	-8.615850e-47
Msa0001940	Msa0379650	0.804218	2.400244e-49	-8.615850e-47
Msa0017950	Msa0379650	0.803146	4.006216e-49	-8.615850e-47
Msa0024400	Msa0379650	0.814802	1.279781e-51	-8.615850e-47
Msa0026200	Msa0379650	0.800177	1.628688e-48	-8.615850e-47
Msa0072720	Msa0379650	0.807836	4.161044e-50	-8.615850e-47
Msa0077340	Msa0379650	0.816811	4.561194e-52	-8.615850e-47
Msa0089980	Msa0379650	0.805955	1.039420e-49	-8.615850e-47
Msa0090010	Msa0379650	0.802289	6.020321e-49	-8.615850e-47
Msa0093850	Msa0379650	0.812243	4.676999e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379650	MtrunA17_Chr3g0132761	98.058	309	6	0	119	427	1	309	0.0	632
Msa0379650	MtrunA17_Chr5g0427661	53.185	314	94	11	115	414	1	275	8.16e-93	281
Msa0379650	MtrunA17_Chr4g0049741	47.012	251	114	8	168	400	20	269	7.03e-57	190
Msa0379650	MtrunA17_Chr3g0132751	54.098	183	74	3	189	364	69	248	1.21e-56	190
Msa0379650	MtrunA17_Chr4g0002231	55.670	97	29	3	267	352	42	135	2.91e-26	103
Msa0379650	MtrunA17_Chr4g0002261	76.471	51	11	1	242	291	16	66	4.71e-18	78.2
Msa0379650	MtrunA17_Chr1g0212081	81.013	79	11	2	19	94	1	78	3.06e-17	82.4
Msa0379650	MtrunA17_Chr3g0102511	40.000	90	52	2	274	362	4	92	1.77e-13	72.0
Msa0379650	MtrunA17_Chr4g0002251	55.556	54	24	0	314	367	5	58	1.93e-13	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379650	AT4G24470.1	63.021	192	68	3	187	376	81	271	3.42e-75	237
Msa0379650	AT4G24470.2	63.021	192	68	3	187	376	81	271	3.42e-75	237
Msa0379650	AT4G24470.3	66.857	175	56	2	187	359	81	255	2.03e-74	235
Msa0379650	AT1G51600.1	53.586	237	95	4	140	361	30	266	1.92e-70	225
Msa0379650	AT1G51600.2	53.586	237	95	4	140	361	30	266	1.92e-70	225
Msa0379650	AT3G21175.2	52.743	237	95	5	136	359	26	258	2.65e-68	219
Msa0379650	AT3G21175.1	53.086	243	87	8	136	359	26	260	1.80e-66	214
Msa0379650	AT3G21175.3	49.171	181	74	5	136	304	26	200	2.61e-39	140
Msa0379650	AT2G46670.1	39.286	112	54	3	191	289	61	171	5.02e-11	62.0

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Find 131 sgRNAs with CRISPR-Local

Find 542 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAACTTTCCCATGGT+GGG	0.521121	3_1:+80952074	None:intergenic
AAAATGTTTGACTAGACAAT+TGG	0.401456	3_1:+80952045	None:intergenic
AAAATTGGAATCATCGGAAG+AGG	0.537469	3_1:+80958842	None:intergenic
AAATCCGGGTTCACAATGTT+TGG	0.357196	3_1:-80957471	Msa0379650:CDS
AAATGGTGCGGCGGAGAGAG+TGG	0.633873	3_1:+80959045	None:intergenic
AACAAGATGGAGGTAACAGT+TGG	0.546569	3_1:-80954313	Msa0379650:CDS
AACGAGCAGCGTCCTTGATT+AGG	0.401134	3_1:-80957275	Msa0379650:CDS
AAGAAACTGTGAACCAAAAT+TGG	0.229069	3_1:+80958827	None:intergenic
AAGCATACCTGCTCAGGTTG+TGG	0.481299	3_1:+80952543	None:intergenic
AAGTGGTAGCACCAGTATGG+AGG	0.653261	3_1:+80958972	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAACCAAAATTGGAATCAT+CGG	+	chr3_1:80952216-80952235	None:intergenic	30.0%
AAGAAACTGTGAACCAAAAT+TGG	+	chr3_1:80952225-80952244	None:intergenic	30.0%
TTAGTTGCAAAAATGGAGAT+TGG	-	chr3_1:80952376-80952395	Msa0379650:CDS	30.0%
CATCATAAGATCAAAAAAGC+TGG	-	chr3_1:80952921-80952940	Msa0379650:intron	30.0%
TTCATAGAGTTGTACATTGT+TGG	+	chr3_1:80953172-80953191	None:intergenic	30.0%
ATTGTTGAACAGACATATCA+GGG	+	chr3_1:80953351-80953370	None:intergenic	30.0%
AATTGTTGAACAGACATATC+AGG	+	chr3_1:80953352-80953371	None:intergenic	30.0%
CAGAATCAAAGACATAAACT+TGG	+	chr3_1:80953411-80953430	None:intergenic	30.0%
GAAAAGGGGAAAATAAAAAG+GGG	+	chr3_1:80953459-80953478	None:intergenic	30.0%
TCAATCTTTCACAATTCACA+AGG	+	chr3_1:80953500-80953519	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	80951969	80959102	80951969	ID=Msa0379650;Name=Msa0379650
chr3_1	mRNA	80951969	80959102	80951969	ID=Msa0379650-mRNA-1;Parent=Msa0379650;Name=Msa0379650-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.87\|0.77\|1\|1\|1\|9\|401\|427
chr3_1	exon	80951969	80952462	80951969	ID=Msa0379650-mRNA-1:exon:20286;Parent=Msa0379650-mRNA-1
chr3_1	exon	80952551	80952616	80952551	ID=Msa0379650-mRNA-1:exon:20285;Parent=Msa0379650-mRNA-1
chr3_1	exon	80952705	80952773	80952705	ID=Msa0379650-mRNA-1:exon:20284;Parent=Msa0379650-mRNA-1
chr3_1	exon	80954067	80954172	80954067	ID=Msa0379650-mRNA-1:exon:20283;Parent=Msa0379650-mRNA-1
chr3_1	exon	80954266	80954373	80954266	ID=Msa0379650-mRNA-1:exon:20282;Parent=Msa0379650-mRNA-1
chr3_1	exon	80957201	80957334	80957201	ID=Msa0379650-mRNA-1:exon:20281;Parent=Msa0379650-mRNA-1
chr3_1	exon	80957448	80957531	80957448	ID=Msa0379650-mRNA-1:exon:20280;Parent=Msa0379650-mRNA-1
chr3_1	exon	80957627	80957971	80957627	ID=Msa0379650-mRNA-1:exon:20279;Parent=Msa0379650-mRNA-1
chr3_1	exon	80958824	80959102	80958824	ID=Msa0379650-mRNA-1:exon:20278;Parent=Msa0379650-mRNA-1
chr3_1	CDS	80958824	80959102	80958824	ID=Msa0379650-mRNA-1:cds;Parent=Msa0379650-mRNA-1
chr3_1	CDS	80957627	80957971	80957627	ID=Msa0379650-mRNA-1:cds;Parent=Msa0379650-mRNA-1
chr3_1	CDS	80957448	80957531	80957448	ID=Msa0379650-mRNA-1:cds;Parent=Msa0379650-mRNA-1
chr3_1	CDS	80957201	80957334	80957201	ID=Msa0379650-mRNA-1:cds;Parent=Msa0379650-mRNA-1
chr3_1	CDS	80954266	80954373	80954266	ID=Msa0379650-mRNA-1:cds;Parent=Msa0379650-mRNA-1
chr3_1	CDS	80954067	80954172	80954067	ID=Msa0379650-mRNA-1:cds;Parent=Msa0379650-mRNA-1
chr3_1	CDS	80952705	80952773	80952705	ID=Msa0379650-mRNA-1:cds;Parent=Msa0379650-mRNA-1
chr3_1	CDS	80952551	80952616	80952551	ID=Msa0379650-mRNA-1:cds;Parent=Msa0379650-mRNA-1
chr3_1	CDS	80952370	80952462	80952370	ID=Msa0379650-mRNA-1:cds;Parent=Msa0379650-mRNA-1
chr3_1	three_prime_UTR	80951969	80952369	80951969	ID=Msa0379650-mRNA-1:three_prime_utr;Parent=Msa0379650-mRNA-1

Gene Sequence

>Msa0379650

ATGACAAAAAATCAATCGAAGCCACAAATCAACCACCACTCTCTCCGCCGCACCATTTCAGAAACACCGTCTCAGCCACCACTTACCATCACCACCACCGAAACACTACCTCCATACTGGTGCTACCACTTCGAAAAACGCGTCTCCGTCACGAATCTCCACGACCTCATCTGCGGCGATTGCAAAAACGGCTTCGTTGAATCAATACCCACACCTTCTCACTCCCGCTCACCTTCTTCCTCTTCCGATGATTCCAATTTTGGTTCACAGTTTCTTCAGGTTAGGGTTTGGATTAGGGTTAGGGTTTCACCTTCGAATGCATCAAAATACCCAAATTCTACACTATCACCAACAATGTACAACTCTATGAACATGTCCGACCAGATCAAGAACAACGAAGATCCTGACAACAACAACAATCACATCCATTTCGAGTCACAAACCCTTGAAGATGCTTCCGGCGAAGGTGAAGGTCAAATCACTGATGTTTCACTTGAAAATGTTTATGTTTCTGGCGATGGAAACCACCCTGATATGTCTGTTCAACAATTCGACGATTCTAGCCAGCTCACACTTTCGTTTCGTGGCCAAGTTTATGTCTTTGATTCTGTTACCCCTGAAAAGGTTCAATCAGTGCTGTTACTGTTAGGTGGATGTGAATTAAATCCGGGTTCACAATGTTTGGACACATCGCCTCTAAATCAGAGGAGTGGTGCTGAATTTCCTACAAGATGTAGTCAGCCGCAACGAGCAGCGTCCTTGATTAGGTTTCGTCAGAAGAGGAAAGAGCGAAACTTTGATAAGAAAGTTAGATATGAAGTGCGTCAAGAAGTTGCACTAAGGATGCAACGTAGTAAGGGTCAATTTACATCAGCTAAGAAACAAGATGGAGGTAACAGTTGGGGTTCTGATCCAGAGTCAGGGCAAGATGTGGTTCAATCAGAAACGTCATGCACACACTGTGGAATCAGTTCAAAATCTACCCCTATGATGCGAAGGGGGCCGTCTGGCCCTAGGACACTATGCAATGCATGTGGGCTTTTCTGGGCAAATAGGGGTACTTTGAGGGATCTATCTACTGCTAGGAGAAATCACGAACAACATACTCTTGCGTCACCTGAGCAGGGTATGAGGGATCTATCTAATTCAAAGAGAAACCACCAACCGCACCCTCTTCCACAACCTGAGCAGGTCGGTGAGGGTAATGAGGACTTGAACTGTGGGACTGCTCCTGCGCATAACGAATCTGTTGATGATAAAACAGCTGTGGTATCCGATCAATGA

Protein sequence

>Msa0379650

MTKNQSKPQINHHSLRRTISETPSQPPLTITTTETLPPYWCYHFEKRVSVTNLHDLICGDCKNGFVESIPTPSHSRSPSSSSDDSNFGSQFLQVRVWIRVRVSPSNASKYPNSTLSPTMYNSMNMSDQIKNNEDPDNNNNHIHFESQTLEDASGEGEGQITDVSLENVYVSGDGNHPDMSVQQFDDSSQLTLSFRGQVYVFDSVTPEKVQSVLLLLGGCELNPGSQCLDTSPLNQRSGAEFPTRCSQPQRAASLIRFRQKRKERNFDKKVRYEVRQEVALRMQRSKGQFTSAKKQDGGNSWGSDPESGQDVVQSETSCTHCGISSKSTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSTARRNHEQHTLASPEQGMRDLSNSKRNHQPHPLPQPEQVGEGNEDLNCGTAPAHNESVDDKTAVVSDQ*