Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375640 | XP_013461366.1 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 6.42e-85 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375640 | sp|Q8LG89|BABL_ARATH | 54.264 | 129 | 56 | 1 | 1 | 126 | 1 | 129 | 1.49e-46 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375640 | B7FHG5 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 3.07e-85 | 253 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa0375640 | 0.811700 | 6.141406e-51 | -8.615850e-47 |
| Msa0019900 | Msa0375640 | 0.816676 | 4.892379e-52 | -8.615850e-47 |
| Msa0025160 | Msa0375640 | 0.837188 | 6.023799e-57 | -8.615850e-47 |
| Msa0040790 | Msa0375640 | 0.827023 | 1.967172e-54 | -8.615850e-47 |
| Msa0044160 | Msa0375640 | 0.860334 | 2.220939e-63 | -8.615850e-47 |
| Msa0050700 | Msa0375640 | 0.803472 | 3.430546e-49 | -8.615850e-47 |
| Msa0050790 | Msa0375640 | 0.812728 | 3.664343e-51 | -8.615850e-47 |
| Msa0054690 | Msa0375640 | 0.801905 | 7.221941e-49 | -8.615850e-47 |
| Msa0067330 | Msa0375640 | 0.801900 | 7.237944e-49 | -8.615850e-47 |
| Msa0077340 | Msa0375640 | 0.832443 | 9.425376e-56 | -8.615850e-47 |
| Msa0077560 | Msa0375640 | 0.835158 | 1.975164e-56 | -8.615850e-47 |
| Msa0081520 | Msa0375640 | 0.833846 | 4.216459e-56 | -8.615850e-47 |
| Msa0093850 | Msa0375640 | 0.822034 | 2.939164e-53 | -8.615850e-47 |
| Msa0098040 | Msa0375640 | 0.801289 | 9.659845e-49 | -8.615850e-47 |
| Msa0118270 | Msa0375640 | 0.801761 | 7.729443e-49 | -8.615850e-47 |
| Msa0123070 | Msa0375640 | 0.812315 | 4.511122e-51 | -8.615850e-47 |
| Msa0124910 | Msa0375640 | 0.820280 | 7.456478e-53 | -8.615850e-47 |
| Msa0125360 | Msa0375640 | 0.825367 | 4.871970e-54 | -8.615850e-47 |
| Msa0127770 | Msa0375640 | 0.836740 | 7.840791e-57 | -8.615850e-47 |
| Msa0136650 | Msa0375640 | 0.812111 | 4.996384e-51 | -8.615850e-47 |
| Msa0146650 | Msa0375640 | 0.822279 | 2.578962e-53 | -8.615850e-47 |
| Msa0158860 | Msa0375640 | 0.809502 | 1.833229e-50 | -8.615850e-47 |
| Msa0161400 | Msa0375640 | 0.808354 | 3.226852e-50 | -8.615850e-47 |
| Msa0168480 | Msa0375640 | 0.805139 | 1.541741e-49 | -8.615850e-47 |
| Msa0173890 | Msa0375640 | 0.818843 | 1.586616e-52 | -8.615850e-47 |
| Msa0174450 | Msa0375640 | 0.847328 | 1.239908e-59 | -8.615850e-47 |
| Msa0183710 | Msa0375640 | 0.849471 | 3.166116e-60 | -8.615850e-47 |
| Msa0184500 | Msa0375640 | 0.806577 | 7.688658e-50 | -8.615850e-47 |
| Msa0189900 | Msa0375640 | 0.825318 | 5.003983e-54 | -8.615850e-47 |
| Msa0196190 | Msa0375640 | 0.836078 | 1.155524e-56 | -8.615850e-47 |
| Msa0199650 | Msa0375640 | 0.809711 | 1.653024e-50 | -8.615850e-47 |
| Msa0209140 | Msa0375640 | 0.862520 | 4.781322e-64 | -8.615850e-47 |
| Msa0221000 | Msa0375640 | 0.823625 | 1.252689e-53 | -8.615850e-47 |
| Msa0222560 | Msa0375640 | 0.807654 | 4.548282e-50 | -8.615850e-47 |
| Msa0369790 | Msa0375640 | 0.833983 | 3.898521e-56 | -8.615850e-47 |
| Msa0371270 | Msa0375640 | 0.809324 | 2.001938e-50 | -8.615850e-47 |
| Msa0375640 | Msa0378720 | 0.830899 | 2.263897e-55 | -8.615850e-47 |
| Msa0375640 | Msa0390970 | 0.801597 | 8.354599e-49 | -8.615850e-47 |
| Msa0375640 | Msa0392380 | 0.805645 | 1.207695e-49 | -8.615850e-47 |
| Msa0375640 | Msa0401970 | 0.807431 | 5.072225e-50 | -8.615850e-47 |
| Msa0375640 | Msa0417970 | 0.813072 | 3.079986e-51 | -8.615850e-47 |
| Msa0375640 | Msa0419540 | 0.803100 | 4.096419e-49 | -8.615850e-47 |
| Msa0375640 | Msa0424140 | 0.905414 | 4.402729e-80 | -8.615850e-47 |
| Msa0375640 | Msa0424160 | 0.994210 | 2.000591e-205 | -8.615850e-47 |
| Msa0375640 | Msa0426530 | 0.806524 | 7.887805e-50 | -8.615850e-47 |
| Msa0375640 | Msa0428370 | 0.803476 | 3.424060e-49 | -8.615850e-47 |
| Msa0375640 | Msa0430260 | 0.813767 | 2.166140e-51 | -8.615850e-47 |
| Msa0375640 | Msa0435370 | 0.829472 | 5.049175e-55 | -8.615850e-47 |
| Msa0375640 | Msa0435420 | 0.852216 | 5.339949e-61 | -8.615850e-47 |
| Msa0375640 | Msa0435570 | 0.849226 | 3.704709e-60 | -8.615850e-47 |
| Msa0375640 | Msa0437520 | 0.846180 | 2.553750e-59 | -8.615850e-47 |
| Msa0375640 | Msa0440350 | 0.819403 | 1.182819e-52 | -8.615850e-47 |
| Msa0375640 | Msa0453040 | 0.820206 | 7.752189e-53 | -8.615850e-47 |
| Msa0375640 | Msa0464000 | 0.829067 | 6.331992e-55 | -8.615850e-47 |
| Msa0375640 | Msa0465530 | 0.805019 | 1.633366e-49 | -8.615850e-47 |
| Msa0375640 | Msa0471000 | 0.823614 | 1.260122e-53 | -8.615850e-47 |
| Msa0375640 | Msa0472950 | 0.807925 | 3.983532e-50 | -8.615850e-47 |
| Msa0375640 | Msa0474730 | 0.841639 | 4.205856e-58 | -8.615850e-47 |
| Msa0375640 | Msa0481890 | 0.812633 | 3.842481e-51 | -8.615850e-47 |
| Msa0375640 | Msa0495300 | 0.835455 | 1.661324e-56 | -8.615850e-47 |
| Msa0375640 | Msa0500380 | 0.807920 | 3.993378e-50 | -8.615850e-47 |
| Msa0375640 | Msa0509550 | 0.835746 | 1.402062e-56 | -8.615850e-47 |
| Msa0375640 | Msa0515800 | 0.987029 | 8.302518e-169 | -8.615850e-47 |
| Msa0375640 | Msa0517250 | 0.832084 | 1.156697e-55 | -8.615850e-47 |
| Msa0375640 | Msa0518030 | 0.803007 | 4.280590e-49 | -8.615850e-47 |
| Msa0375640 | Msa0519760 | 0.859764 | 3.300649e-63 | -8.615850e-47 |
| Msa0375640 | Msa0519810 | 0.840026 | 1.113883e-57 | -8.615850e-47 |
| Msa0375640 | Msa0519840 | 0.858687 | 6.945119e-63 | -8.615850e-47 |
| Msa0375640 | Msa0527820 | 0.813497 | 2.484741e-51 | -8.615850e-47 |
| Msa0375640 | Msa0528570 | 0.821850 | 3.243196e-53 | -8.615850e-47 |
| Msa0375640 | Msa0529030 | 0.824661 | 7.152599e-54 | -8.615850e-47 |
| Msa0375640 | Msa0567170 | 0.808146 | 3.574910e-50 | -8.615850e-47 |
| Msa0375640 | Msa0571290 | 0.828647 | 8.004601e-55 | -8.615850e-47 |
| Msa0375640 | Msa0580370 | 0.813849 | 2.078253e-51 | -8.615850e-47 |
| Msa0375640 | Msa0582480 | 0.821319 | 4.301677e-53 | -8.615850e-47 |
| Msa0375640 | Msa0583360 | -0.812793 | 3.544623e-51 | -8.615850e-47 |
| Msa0375640 | Msa0586220 | 0.811916 | 5.511861e-51 | -8.615850e-47 |
| Msa0375640 | Msa0591170 | 0.820093 | 8.230806e-53 | -8.615850e-47 |
| Msa0375640 | Msa0599420 | 0.801692 | 7.988032e-49 | -8.615850e-47 |
| Msa0375640 | Msa0611210 | 0.808250 | 3.397146e-50 | -8.615850e-47 |
| Msa0375640 | Msa0614000 | 0.808750 | 2.656887e-50 | -8.615850e-47 |
| Msa0375640 | Msa0623900 | 0.808551 | 2.929649e-50 | -8.615850e-47 |
| Msa0375640 | Msa0623910 | 0.818942 | 1.506617e-52 | -8.615850e-47 |
| Msa0375640 | Msa0624900 | 0.814927 | 1.200714e-51 | -8.615850e-47 |
| Msa0375640 | Msa0626450 | 0.830753 | 2.458593e-55 | -8.615850e-47 |
| Msa0375640 | Msa0626490 | 0.829165 | 5.995885e-55 | -8.615850e-47 |
| Msa0375640 | Msa0651550 | 0.810984 | 8.783017e-51 | -8.615850e-47 |
| Msa0375640 | Msa0652770 | 0.848763 | 4.979943e-60 | -8.615850e-47 |
| Msa0375640 | Msa0658000 | 0.801944 | 7.089091e-49 | -8.615850e-47 |
| Msa0375640 | Msa0658640 | 0.814073 | 1.854769e-51 | -8.615850e-47 |
| Msa0375640 | Msa0660370 | 0.804404 | 2.195864e-49 | -8.615850e-47 |
| Msa0375640 | Msa0664090 | 0.815436 | 9.253723e-52 | -8.615850e-47 |
| Msa0375640 | Msa0664600 | 0.826811 | 2.210438e-54 | -8.615850e-47 |
| Msa0375640 | Msa0674480 | 0.807759 | 4.321456e-50 | -8.615850e-47 |
| Msa0375640 | Msa0681260 | 0.838618 | 2.583789e-57 | -8.615850e-47 |
| Msa0375640 | Msa0681280 | 0.835009 | 2.153313e-56 | -8.615850e-47 |
| Msa0375640 | Msa0692790 | 0.815569 | 8.646198e-52 | -8.615850e-47 |
| Msa0375640 | Msa0693330 | 0.854505 | 1.176872e-61 | -8.615850e-47 |
| Msa0375640 | Msa0695270 | 0.816644 | 4.971763e-52 | -8.615850e-47 |
| Msa0375640 | Msa0702720 | 0.836213 | 1.067272e-56 | -8.615850e-47 |
| Msa0375640 | Msa0702890 | 0.800582 | 1.346830e-48 | -8.615850e-47 |
| Msa0375640 | Msa0703950 | 0.855613 | 5.608583e-62 | -8.615850e-47 |
| Msa0375640 | Msa0706760 | 0.804452 | 2.145955e-49 | -8.615850e-47 |
| Msa0375640 | Msa0709440 | 0.815140 | 1.076724e-51 | -8.615850e-47 |
| Msa0375640 | Msa0711400 | 0.820411 | 6.956517e-53 | -8.615850e-47 |
| Msa0375640 | Msa0716890 | 0.812879 | 3.394729e-51 | -8.615850e-47 |
| Msa0375640 | Msa0723090 | 0.824060 | 9.901695e-54 | -8.615850e-47 |
| Msa0375640 | Msa0725750 | 0.800515 | 1.390184e-48 | -8.615850e-47 |
| Msa0375640 | Msa0733080 | 0.819198 | 1.317132e-52 | -8.615850e-47 |
| Msa0375640 | Msa0738700 | 0.824467 | 7.945862e-54 | -8.615850e-47 |
| Msa0375640 | Msa0756490 | 0.807621 | 4.622524e-50 | -8.615850e-47 |
| Msa0375640 | Msa0758030 | 0.811956 | 5.401160e-51 | -8.615850e-47 |
| Msa0375640 | Msa0768990 | 0.810251 | 1.265092e-50 | -8.615850e-47 |
| Msa0375640 | Msa0781830 | 0.811443 | 6.984032e-51 | -8.615850e-47 |
| Msa0375640 | Msa0795750 | 0.803669 | 3.122447e-49 | -8.615850e-47 |
| Msa0375640 | Msa0795870 | 0.821014 | 5.057768e-53 | -8.615850e-47 |
| Msa0375640 | Msa0829330 | 0.807362 | 5.244971e-50 | -8.615850e-47 |
| Msa0375640 | Msa0833530 | 0.809656 | 1.698720e-50 | -8.615850e-47 |
| Msa0375640 | Msa0833650 | 0.811620 | 6.391618e-51 | -8.615850e-47 |
| Msa0375640 | Msa0851850 | 0.846447 | 2.160135e-59 | -8.615850e-47 |
| Msa0375640 | Msa0859290 | 0.805031 | 1.624535e-49 | -8.615850e-47 |
| Msa0375640 | Msa0878280 | 0.857612 | 1.449203e-62 | -8.615850e-47 |
| Msa0375640 | Msa0880270 | 0.812216 | 4.739214e-51 | -8.615850e-47 |
| Msa0375640 | Msa0945190 | 0.858731 | 6.737624e-63 | -8.615850e-47 |
| Msa0375640 | Msa0979180 | 0.809537 | 1.801592e-50 | -8.615850e-47 |
| Msa0375640 | Msa0981320 | 0.821646 | 3.614451e-53 | -8.615850e-47 |
| Msa0375640 | Msa1002350 | 0.813565 | 2.399781e-51 | -8.615850e-47 |
| Msa0375640 | Msa1020480 | 0.815158 | 1.066820e-51 | -8.615850e-47 |
| Msa0375640 | Msa1020510 | 0.803735 | 3.024420e-49 | -8.615850e-47 |
| Msa0375640 | Msa1042160 | 0.851299 | 9.717398e-61 | -8.615850e-47 |
| Msa0375640 | Msa1042190 | 0.853228 | 2.745501e-61 | -8.615850e-47 |
| Msa0375640 | Msa1044680 | 0.806504 | 7.964908e-50 | -8.615850e-47 |
| Msa0375640 | Msa1072940 | 0.888894 | 3.937021e-73 | -8.615850e-47 |
| Msa0375640 | Msa1074220 | 0.835328 | 1.788420e-56 | -8.615850e-47 |
| Msa0375640 | Msa1080000 | 0.840689 | 7.474399e-58 | -8.615850e-47 |
| Msa0375640 | Msa1084530 | 0.803280 | 3.758792e-49 | -8.615850e-47 |
| Msa0375640 | Msa1085330 | 0.812979 | 3.227797e-51 | -8.615850e-47 |
| Msa0375640 | Msa1106590 | 0.822985 | 1.767085e-53 | -8.615850e-47 |
| Msa0375640 | Msa1123210 | 0.811913 | 5.519560e-51 | -8.615850e-47 |
| Msa0375640 | Msa1125820 | 0.809893 | 1.510684e-50 | -8.615850e-47 |
| Msa0375640 | Msa1125990 | 0.812065 | 5.114703e-51 | -8.615850e-47 |
| Msa0375640 | Msa1132840 | 0.813387 | 2.626927e-51 | -8.615850e-47 |
| Msa0375640 | Msa1133680 | 0.806354 | 8.567766e-50 | -8.615850e-47 |
| Msa0375640 | Msa1145300 | 0.803989 | 2.679250e-49 | -8.615850e-47 |
| Msa0375640 | Msa1145580 | 0.821575 | 3.753773e-53 | -8.615850e-47 |
| Msa0375640 | Msa1160920 | 0.888558 | 5.307184e-73 | -8.615850e-47 |
| Msa0375640 | Msa1165090 | 0.802529 | 5.373005e-49 | -8.615850e-47 |
| Msa0375640 | Msa1167470 | 0.845932 | 2.982299e-59 | -8.615850e-47 |
| Msa0375640 | Msa1171290 | 0.816060 | 6.718875e-52 | -8.615850e-47 |
| Msa0375640 | Msa1174840 | 0.800600 | 1.335734e-48 | -8.615850e-47 |
| Msa0375640 | Msa1190180 | 0.804511 | 2.086209e-49 | -8.615850e-47 |
| Msa0375640 | Msa1200890 | 0.809561 | 1.780547e-50 | -8.615850e-47 |
| Msa0375640 | Msa1206230 | 0.809340 | 1.985946e-50 | -8.615850e-47 |
| Msa0375640 | Msa1217210 | 0.829735 | 4.359988e-55 | -8.615850e-47 |
| Msa0375640 | Msa1225860 | -0.807568 | 4.744311e-50 | -8.615850e-47 |
| Msa0375640 | Msa1226520 | 0.805318 | 1.414530e-49 | -8.615850e-47 |
| Msa0375640 | Msa1257440 | 0.802911 | 4.481509e-49 | -8.615850e-47 |
| Msa0375640 | Msa1262590 | 0.833903 | 4.080360e-56 | -8.615850e-47 |
| Msa0375640 | Msa1268240 | 0.839826 | 1.256268e-57 | -8.615850e-47 |
| Msa0375640 | Msa1297970 | 0.811591 | 6.484833e-51 | -8.615850e-47 |
| Msa0375640 | Msa1306640 | 0.804081 | 2.563858e-49 | -8.615850e-47 |
| Msa0375640 | Msa1307630 | 0.819024 | 1.443072e-52 | -8.615850e-47 |
| Msa0375640 | Msa1316330 | 0.821530 | 3.845603e-53 | -8.615850e-47 |
| Msa0375640 | Msa1341840 | 0.827846 | 1.248149e-54 | -8.615850e-47 |
| Msa0375640 | Msa1348090 | 0.823408 | 1.407977e-53 | -8.615850e-47 |
| Msa0375640 | Msa1356830 | 0.802495 | 5.459637e-49 | -8.615850e-47 |
| Msa0375640 | Msa1359690 | 0.813583 | 2.378091e-51 | -8.615850e-47 |
| Msa0375640 | Msa1371910 | 0.844975 | 5.417253e-59 | -8.615850e-47 |
| Msa0375640 | Msa1375280 | 0.801321 | 9.513409e-49 | -8.615850e-47 |
| Msa0375640 | Msa1389900 | 0.833723 | 4.527178e-56 | -8.615850e-47 |
| Msa0375640 | Msa1393780 | 0.821240 | 4.484465e-53 | -8.615850e-47 |
| Msa0375640 | Msa1405460 | 0.823836 | 1.117750e-53 | -8.615850e-47 |
| Msa0375640 | Msa1407840 | 0.822523 | 2.263415e-53 | -8.615850e-47 |
| Msa0375640 | Msa1409410 | 0.805946 | 1.044294e-49 | -8.615850e-47 |
| Msa0375640 | Msa1412000 | 0.854489 | 1.189376e-61 | -8.615850e-47 |
| Msa0375640 | Msa1414170 | 0.824785 | 6.688660e-54 | -8.615850e-47 |
| Msa0375640 | Msa1415540 | 0.823589 | 1.276916e-53 | -8.615850e-47 |
| Msa0375640 | Msa1427110 | 0.843417 | 1.419618e-58 | -8.615850e-47 |
| Msa0375640 | Msa1437810 | 0.818715 | 1.695810e-52 | -8.615850e-47 |
| Msa0375640 | Msa1437940 | 0.827059 | 1.928493e-54 | -8.615850e-47 |
| Msa0375640 | Msa1440630 | 0.812254 | 4.649694e-51 | -8.615850e-47 |
| Msa0375640 | Msa1440960 | 0.824632 | 7.264795e-54 | -8.615850e-47 |
| Msa0375640 | Msa1447100 | 0.840728 | 7.298891e-58 | -8.615850e-47 |
| Msa0375640 | Msa1449900 | 0.858249 | 9.380567e-63 | -8.615850e-47 |
| Msa0375640 | Msa1449930 | 0.814573 | 1.438531e-51 | -8.615850e-47 |
| Msa0375640 | Msa1454500 | 0.823996 | 1.025427e-53 | -8.615850e-47 |
| Msa0375640 | Msa1455640 | 0.822392 | 2.427785e-53 | -8.615850e-47 |
| Msa0375640 | Msa1459460 | 0.805522 | 1.281771e-49 | -8.615850e-47 |
| Msa0375640 | Msa1461370 | 0.833522 | 5.081489e-56 | -8.615850e-47 |
| Msa0247890 | Msa0375640 | 0.802912 | 4.477980e-49 | -8.615850e-47 |
| Msa0249850 | Msa0375640 | 0.807542 | 4.804583e-50 | -8.615850e-47 |
| Msa0261170 | Msa0375640 | 0.802366 | 5.805507e-49 | -8.615850e-47 |
| Msa0275080 | Msa0375640 | 0.801007 | 1.103155e-48 | -8.615850e-47 |
| Msa0275770 | Msa0375640 | 0.824351 | 8.459637e-54 | -8.615850e-47 |
| Msa0281470 | Msa0375640 | 0.825304 | 5.041295e-54 | -8.615850e-47 |
| Msa0288620 | Msa0375640 | 0.835307 | 1.811288e-56 | -8.615850e-47 |
| Msa0307270 | Msa0375640 | 0.898854 | 3.526073e-77 | -8.615850e-47 |
| Msa0315980 | Msa0375640 | 0.844942 | 5.529404e-59 | -8.615850e-47 |
| Msa0326710 | Msa0375640 | 0.814652 | 1.381186e-51 | -8.615850e-47 |
| Msa0330520 | Msa0375640 | 0.848259 | 6.869607e-60 | -8.615850e-47 |
| Msa0341690 | Msa0375640 | 0.816815 | 4.551621e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375640 | MtrunA17_Chr3g0125791 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 5.91e-89 | 253 |
| Msa0375640 | MtrunA17_Chr3g0125761 | 66.400 | 125 | 42 | 0 | 1 | 125 | 1 | 125 | 5.56e-61 | 183 |
| Msa0375640 | MtrunA17_Chr8g0380901 | 61.905 | 126 | 41 | 2 | 1 | 125 | 1 | 120 | 5.26e-54 | 165 |
| Msa0375640 | MtrunA17_Chr2g0301431 | 47.619 | 126 | 63 | 2 | 1 | 125 | 1 | 124 | 9.13e-40 | 129 |
| Msa0375640 | MtrunA17_Chr8g0380711 | 55.882 | 102 | 44 | 1 | 25 | 125 | 20 | 121 | 3.21e-38 | 125 |
| Msa0375640 | MtrunA17_Chr5g0394321 | 36.752 | 117 | 65 | 3 | 14 | 123 | 7 | 121 | 1.76e-21 | 84.3 |
| Msa0375640 | MtrunA17_Chr8g0335531 | 40.984 | 122 | 66 | 4 | 10 | 126 | 1 | 121 | 4.59e-21 | 83.6 |
| Msa0375640 | MtrunA17_Chr1g0177341 | 35.780 | 109 | 66 | 3 | 19 | 123 | 11 | 119 | 5.95e-19 | 77.4 |
| Msa0375640 | MtrunA17_Chr1g0177331 | 35.780 | 109 | 66 | 3 | 19 | 123 | 11 | 119 | 5.95e-19 | 77.4 |
| Msa0375640 | MtrunA17_Chr1g0205701 | 35.965 | 114 | 63 | 4 | 18 | 123 | 9 | 120 | 5.96e-19 | 78.2 |
| Msa0375640 | MtrunA17_Chr8g0335571 | 38.525 | 122 | 69 | 4 | 10 | 126 | 1 | 121 | 1.43e-18 | 77.4 |
| Msa0375640 | MtrunA17_Chr7g0253681 | 34.167 | 120 | 75 | 3 | 8 | 123 | 2 | 121 | 1.54e-18 | 76.3 |
| Msa0375640 | MtrunA17_Chr7g0253731 | 32.143 | 112 | 72 | 3 | 9 | 117 | 2 | 112 | 1.85e-18 | 76.3 |
| Msa0375640 | MtrunA17_Chr4g0064041 | 39.394 | 99 | 53 | 2 | 32 | 123 | 190 | 288 | 3.04e-18 | 79.0 |
| Msa0375640 | MtrunA17_Chr4g0064041 | 33.333 | 129 | 72 | 3 | 12 | 126 | 1 | 129 | 1.45e-15 | 71.2 |
| Msa0375640 | MtrunA17_Chr7g0253701 | 34.167 | 120 | 74 | 4 | 8 | 123 | 2 | 120 | 1.10e-17 | 74.3 |
| Msa0375640 | MtrunA17_Chr7g0253671 | 34.167 | 120 | 74 | 4 | 8 | 123 | 2 | 120 | 1.10e-17 | 74.3 |
| Msa0375640 | MtrunA17_Chr1g0211101 | 36.134 | 119 | 70 | 4 | 11 | 123 | 9 | 127 | 1.30e-17 | 74.3 |
| Msa0375640 | MtrunA17_Chr3g0132441 | 38.393 | 112 | 65 | 3 | 15 | 123 | 8 | 118 | 1.87e-17 | 74.3 |
| Msa0375640 | MtrunA17_Chr2g0306461 | 35.000 | 120 | 69 | 4 | 10 | 123 | 7 | 123 | 3.73e-17 | 73.6 |
| Msa0375640 | MtrunA17_Chr3g0132701 | 40.000 | 115 | 61 | 4 | 17 | 123 | 6 | 120 | 5.19e-17 | 73.6 |
| Msa0375640 | MtrunA17_Chr2g0323021 | 39.048 | 105 | 59 | 4 | 23 | 123 | 15 | 118 | 8.68e-17 | 73.2 |
| Msa0375640 | MtrunA17_Chr7g0253761 | 34.454 | 119 | 73 | 3 | 10 | 123 | 1 | 119 | 2.27e-16 | 71.2 |
| Msa0375640 | MtrunA17_Chr7g0253641 | 34.821 | 112 | 69 | 3 | 15 | 123 | 9 | 119 | 3.28e-16 | 71.6 |
| Msa0375640 | MtrunA17_Chr6g0459441 | 40.816 | 98 | 53 | 4 | 30 | 123 | 23 | 119 | 4.61e-16 | 70.5 |
| Msa0375640 | MtrunA17_Chr3g0132511 | 39.130 | 115 | 62 | 4 | 17 | 123 | 6 | 120 | 7.70e-16 | 70.5 |
| Msa0375640 | MtrunA17_Chr6g0483981 | 36.000 | 125 | 61 | 3 | 15 | 125 | 9 | 128 | 1.94e-15 | 71.2 |
| Msa0375640 | MtrunA17_Chr3g0132431 | 39.474 | 114 | 61 | 4 | 17 | 123 | 6 | 118 | 2.67e-15 | 68.6 |
| Msa0375640 | MtrunA17_Chr4g0033131 | 29.752 | 121 | 72 | 3 | 16 | 123 | 7 | 127 | 6.43e-15 | 67.4 |
| Msa0375640 | MtrunA17_Chr4g0033531 | 29.752 | 121 | 72 | 3 | 16 | 123 | 7 | 127 | 6.43e-15 | 67.4 |
| Msa0375640 | MtrunA17_Chr6g0481491 | 31.250 | 112 | 71 | 4 | 15 | 123 | 12 | 120 | 3.21e-14 | 66.2 |
| Msa0375640 | MtrunA17_Chr6g0453801 | 31.707 | 123 | 80 | 2 | 7 | 125 | 9 | 131 | 5.45e-14 | 64.7 |
| Msa0375640 | MtrunA17_Chr7g0253631 | 34.454 | 119 | 73 | 3 | 10 | 123 | 1 | 119 | 7.33e-14 | 65.5 |
| Msa0375640 | MtrunA17_Chr6g0453921 | 30.827 | 133 | 82 | 3 | 3 | 125 | 2 | 134 | 1.44e-13 | 63.9 |
| Msa0375640 | MtrunA17_Chr4g0001571 | 32.653 | 98 | 64 | 1 | 30 | 125 | 26 | 123 | 3.03e-13 | 62.8 |
| Msa0375640 | MtrunA17_Chr4g0041811 | 28.800 | 125 | 82 | 2 | 9 | 126 | 8 | 132 | 1.36e-12 | 62.0 |
| Msa0375640 | MtrunA17_Chr1g0196801 | 33.333 | 102 | 64 | 3 | 27 | 125 | 17 | 117 | 6.17e-12 | 59.7 |
| Msa0375640 | MtrunA17_Chr5g0440711 | 30.328 | 122 | 80 | 3 | 7 | 123 | 3 | 124 | 3.00e-11 | 57.0 |
| Msa0375640 | MtrunA17_Chr4g0064031 | 33.019 | 106 | 59 | 4 | 26 | 120 | 21 | 125 | 4.29e-11 | 57.0 |
| Msa0375640 | MtrunA17_Chr8g0387804 | 29.091 | 110 | 71 | 3 | 20 | 123 | 17 | 125 | 6.96e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375640 | AT2G02850.1 | 54.264 | 129 | 56 | 1 | 1 | 126 | 1 | 129 | 1.52e-47 | 149 |
| Msa0375640 | AT1G17800.1 | 40.945 | 127 | 67 | 4 | 7 | 126 | 12 | 137 | 4.54e-27 | 98.2 |
| Msa0375640 | AT2G32300.1 | 36.885 | 122 | 73 | 3 | 8 | 126 | 2 | 122 | 4.15e-22 | 88.2 |
| Msa0375640 | AT2G32300.2 | 36.885 | 122 | 73 | 3 | 8 | 126 | 32 | 152 | 6.51e-22 | 88.2 |
| Msa0375640 | AT5G26330.1 | 32.787 | 122 | 77 | 2 | 10 | 126 | 1 | 122 | 6.91e-21 | 83.6 |
| Msa0375640 | AT3G17675.1 | 34.426 | 122 | 77 | 2 | 5 | 123 | 4 | 125 | 1.28e-20 | 81.3 |
| Msa0375640 | AT5G07475.1 | 37.838 | 111 | 62 | 4 | 19 | 123 | 13 | 122 | 1.61e-19 | 80.1 |
| Msa0375640 | AT3G60280.1 | 41.237 | 97 | 53 | 3 | 30 | 123 | 21 | 116 | 3.12e-19 | 80.1 |
| Msa0375640 | AT3G27200.1 | 35.537 | 121 | 73 | 4 | 10 | 126 | 3 | 122 | 2.05e-18 | 76.6 |
| Msa0375640 | AT2G44790.1 | 40.741 | 108 | 54 | 5 | 24 | 126 | 23 | 125 | 2.80e-17 | 74.3 |
| Msa0375640 | AT3G60270.1 | 37.113 | 97 | 57 | 3 | 30 | 123 | 23 | 118 | 9.35e-17 | 72.8 |
| Msa0375640 | AT2G25060.1 | 33.613 | 119 | 71 | 3 | 16 | 126 | 14 | 132 | 2.21e-16 | 71.6 |
| Msa0375640 | AT2G31050.1 | 33.913 | 115 | 71 | 3 | 17 | 126 | 12 | 126 | 1.43e-15 | 69.7 |
| Msa0375640 | AT2G26720.1 | 31.405 | 121 | 78 | 3 | 11 | 126 | 6 | 126 | 3.48e-15 | 68.9 |
| Msa0375640 | AT4G31840.1 | 29.134 | 127 | 82 | 3 | 8 | 126 | 2 | 128 | 5.50e-15 | 67.8 |
| Msa0375640 | AT1G72230.1 | 36.207 | 116 | 68 | 4 | 11 | 123 | 3 | 115 | 1.38e-14 | 67.0 |
| Msa0375640 | AT3G20570.1 | 30.952 | 126 | 80 | 3 | 4 | 123 | 2 | 126 | 3.93e-13 | 63.5 |
| Msa0375640 | AT5G20230.1 | 34.000 | 100 | 60 | 2 | 33 | 126 | 25 | 124 | 7.06e-13 | 62.8 |
| Msa0375640 | AT1G22480.1 | 37.931 | 116 | 63 | 5 | 12 | 123 | 1 | 111 | 1.44e-12 | 61.6 |
| Msa0375640 | AT4G30590.1 | 28.571 | 126 | 79 | 3 | 12 | 126 | 4 | 129 | 7.82e-12 | 59.7 |
| Msa0375640 | AT2G27035.1 | 32.500 | 120 | 60 | 6 | 16 | 123 | 12 | 122 | 1.28e-11 | 58.9 |
| Msa0375640 | AT5G15350.1 | 29.661 | 118 | 75 | 3 | 14 | 123 | 6 | 123 | 2.20e-11 | 58.2 |
| Msa0375640 | AT3G18590.1 | 28.926 | 121 | 73 | 6 | 13 | 123 | 7 | 124 | 3.74e-11 | 58.2 |
Find 69 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAACTTAAAATTATTTA+TGG | 0.093599 | 3_1:-75422312 | None:intergenic |
| ATGCTGTTATTTAATTTATA+TGG | 0.223296 | 3_1:-75422050 | None:intergenic |
| AAGATCCCTTTGTTTGTTTA+CGG | 0.251998 | 3_1:+75422252 | Msa0375640:three_prime_UTR |
| TTTGGTGATCAATATGTAAA+AGG | 0.277801 | 3_1:+75422101 | Msa0375640:three_prime_UTR |
| AGACTTATCCCTTTATATAA+TGG | 0.283252 | 3_1:-75421309 | None:intergenic |
| GTAGTTAATTAGTTAATTAA+TGG | 0.284468 | 3_1:+75421993 | Msa0375640:three_prime_UTR |
| ACACAATATTAAAACACTTT+TGG | 0.288556 | 3_1:+75421259 | Msa0375640:five_prime_UTR |
| CTACTAGCTATATGTTGATT+TGG | 0.303864 | 3_1:+75422083 | Msa0375640:three_prime_UTR |
| AATTAATAAAACTTCCGTTT+TGG | 0.318991 | 3_1:+75422347 | Msa0375640:three_prime_UTR |
| TCATCAATTCCATTATATAA+AGG | 0.321055 | 3_1:+75421300 | Msa0375640:five_prime_UTR |
| TATCCTGGTCACTGCCAATC+TGG | 0.329505 | 3_1:+75421916 | Msa0375640:CDS |
| GTCCTCTTGATAGCCTGATT+TGG | 0.349417 | 3_1:-75421873 | None:intergenic |
| CATCAATTCCATTATATAAA+GGG | 0.362055 | 3_1:+75421301 | Msa0375640:five_prime_UTR |
| AAAACTGATACTTGGCCTAA+TGG | 0.367231 | 3_1:+75421541 | Msa0375640:CDS |
| GGTGCTAAAGTGTTCAGTTC+AGG | 0.375248 | 3_1:+75421844 | Msa0375640:CDS |
| CATATTCTCACTATTTCTCT+TGG | 0.410921 | 3_1:-75421392 | None:intergenic |
| AGAGGACTAAACTGCATAGA+TGG | 0.414690 | 3_1:-75421950 | None:intergenic |
| CATCTCACTAGAATTGCTAT+AGG | 0.429228 | 3_1:+75421354 | Msa0375640:five_prime_UTR |
| GTTCAGGGAGTGACCAAATC+AGG | 0.435888 | 3_1:+75421860 | Msa0375640:CDS |
| TCTTACACCGTTGGAGGACC+TGG | 0.442628 | 3_1:+75421505 | Msa0375640:CDS |
| TAAATAACAGCATGAGTACT+AGG | 0.453436 | 3_1:+75422060 | Msa0375640:three_prime_UTR |
| TTCTAGTGAGATGGTTGAGT+TGG | 0.453959 | 3_1:-75421344 | None:intergenic |
| GATGGTTGAGTTGGTTTGCA+AGG | 0.474704 | 3_1:-75421335 | None:intergenic |
| CACTTTCAGCCAGAAACAAA+AGG | 0.476546 | 3_1:-75421471 | None:intergenic |
| TACTTCATATGCAGCTATCC+TGG | 0.480047 | 3_1:+75421901 | Msa0375640:CDS |
| GAGAATATGACTGAGGGAAG+AGG | 0.490305 | 3_1:+75421406 | Msa0375640:exon |
| ATCCTGGTCACTGCCAATCT+GGG | 0.503016 | 3_1:+75421917 | Msa0375640:CDS |
| TGATGAATCTGTTGAGCTAT+GGG | 0.512228 | 3_1:-75421283 | None:intergenic |
| GTGCTAAAGTGTTCAGTTCA+GGG | 0.512300 | 3_1:+75421845 | Msa0375640:CDS |
| TTGATGAATCTGTTGAGCTA+TGG | 0.522374 | 3_1:-75421284 | None:intergenic |
| ATCCCAGATTGGCAGTGACC+AGG | 0.530524 | 3_1:-75421919 | None:intergenic |
| TAATGGTCAATTAGCTGTAG+TGG | 0.537805 | 3_1:+75422010 | Msa0375640:three_prime_UTR |
| GGACATACAAAACTGATACT+TGG | 0.540585 | 3_1:+75421533 | Msa0375640:CDS |
| TGGAAACCTTCATCCCAGAT+TGG | 0.543764 | 3_1:-75421930 | None:intergenic |
| TCTCACAAGCAGGGATAGGT+TGG | 0.544854 | 3_1:-75421219 | None:intergenic |
| CACAAGCAGGGATAGGTTGG+TGG | 0.545157 | 3_1:-75421216 | None:intergenic |
| TCACTGCCAATCTGGGATGA+AGG | 0.545313 | 3_1:+75421924 | Msa0375640:CDS |
| TGGATCTCACAAGCAGGGAT+AGG | 0.547940 | 3_1:-75421223 | None:intergenic |
| CTTAGACCGTAAACAAACAA+AGG | 0.558115 | 3_1:-75422258 | None:intergenic |
| TTAGACCGTAAACAAACAAA+GGG | 0.559350 | 3_1:-75422257 | None:intergenic |
| TTGGATGCTACTCACTAGCT+AGG | 0.563622 | 3_1:-75421132 | None:intergenic |
| GCAGCATCTTACACCGTTGG+AGG | 0.574303 | 3_1:+75421499 | Msa0375640:CDS |
| CTATAGCAATTCTAGTGAGA+TGG | 0.575116 | 3_1:-75421353 | None:intergenic |
| GTGGTTGCCGTGGACAAAAG+TGG | 0.576000 | 3_1:+75421796 | Msa0375640:CDS |
| CTGAACACTTTAGCACCTCC+CGG | 0.578857 | 3_1:-75421838 | None:intergenic |
| AATGCAGCATCTTACACCGT+TGG | 0.578987 | 3_1:+75421496 | Msa0375640:CDS |
| CACACACAATGTGGTTGCCG+TGG | 0.585202 | 3_1:+75421786 | Msa0375640:CDS |
| AATAGTGAGAATATGACTGA+GGG | 0.586297 | 3_1:+75421400 | Msa0375640:exon |
| CTTACACCGTTGGAGGACCT+GGG | 0.588429 | 3_1:+75421506 | Msa0375640:CDS |
| GAAAATCTGAGGGACCAAAA+CGG | 0.589382 | 3_1:-75422361 | None:intergenic |
| AAATAGTGAGAATATGACTG+AGG | 0.592419 | 3_1:+75421399 | Msa0375640:exon |
| ATCAATATGTAAAAGGAGTG+TGG | 0.597954 | 3_1:+75422108 | Msa0375640:three_prime_UTR |
| ATATTGTGGATCTCACAAGC+AGG | 0.598727 | 3_1:-75421229 | None:intergenic |
| AAGGGAGAGGATGGTAATGT+CGG | 0.599256 | 3_1:+75421107 | Msa0375640:five_prime_UTR |
| TAGTCAAGTCACGTAGCTAG+AGG | 0.615737 | 3_1:-75421968 | None:intergenic |
| GTAAAAGGAGTGTGGTGAGG+TGG | 0.622991 | 3_1:+75422116 | Msa0375640:three_prime_UTR |
| TACAACAACTGTAAGACACC+GGG | 0.625426 | 3_1:+75421820 | Msa0375640:CDS |
| TTACACCGTTGGAGGACCTG+GGG | 0.632787 | 3_1:+75421507 | Msa0375640:CDS |
| CACGGCAACCACATTGTGTG+TGG | 0.635175 | 3_1:-75421785 | None:intergenic |
| TATTGTGGATCTCACAAGCA+GGG | 0.635490 | 3_1:-75421228 | None:intergenic |
| AGGCAGTGCATCTATGAACA+TGG | 0.647845 | 3_1:+75421426 | Msa0375640:CDS |
| ATTGTGTAGATTGAATATTG+TGG | 0.652337 | 3_1:-75421243 | None:intergenic |
| GACCAAATCAGGCTATCAAG+AGG | 0.658515 | 3_1:+75421871 | Msa0375640:CDS |
| TGATTCAACCACACACAATG+TGG | 0.661122 | 3_1:+75421777 | Msa0375640:CDS |
| ATACAACAACTGTAAGACAC+CGG | 0.661265 | 3_1:+75421819 | Msa0375640:CDS |
| TACACCGTTGGAGGACCTGG+GGG | 0.694377 | 3_1:+75421508 | Msa0375640:CDS |
| TATGTAAAAGGAGTGTGGTG+AGG | 0.701233 | 3_1:+75422113 | Msa0375640:three_prime_UTR |
| AACAACTGTAAGACACCGGG+AGG | 0.711932 | 3_1:+75421823 | Msa0375640:CDS |
| GATGAATCTGTTGAGCTATG+GGG | 0.740755 | 3_1:-75421282 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAACTTAAAATTATTTA+TGG | - | chr3_1:75422315-75422334 | None:intergenic | 10.0% |
| !!! | ATAATTTTAAGTTTTCATTT+TGG | + | chr3_1:75422318-75422337 | Msa0375640:three_prime_UTR | 10.0% |
| !! | TGAAAACTTAAAATTATTTA+TGG | - | chr3_1:75422315-75422334 | None:intergenic | 10.0% |
| !!! | ATAATTTTAAGTTTTCATTT+TGG | + | chr3_1:75422318-75422337 | Msa0375640:three_prime_UTR | 10.0% |
| !!! | GTTTTTTTGTTTTTTTAAGT+TGG | - | chr3_1:75421154-75421173 | None:intergenic | 15.0% |
| !! | TAATTTAATTACAGTACAAT+TGG | + | chr3_1:75421637-75421656 | Msa0375640:intron | 15.0% |
| !! | AATTTAATTACAGTACAATT+GGG | + | chr3_1:75421638-75421657 | Msa0375640:intron | 15.0% |
| !!! | AAAATTGAGAAATATAGTTT+TGG | - | chr3_1:75421677-75421696 | None:intergenic | 15.0% |
| !!! | TCAATTTTACAAAATTGTTT+TGG | + | chr3_1:75421689-75421708 | Msa0375640:intron | 15.0% |
| !! | GTAGTTAATTAGTTAATTAA+TGG | + | chr3_1:75421993-75422012 | Msa0375640:three_prime_UTR | 15.0% |
| !!! | ATGCTGTTATTTAATTTATA+TGG | - | chr3_1:75422053-75422072 | None:intergenic | 15.0% |
| !!! | GTTTTTTTGTTTTTTTAAGT+TGG | - | chr3_1:75421154-75421173 | None:intergenic | 15.0% |
| !! | TAATTTAATTACAGTACAAT+TGG | + | chr3_1:75421637-75421656 | Msa0375640:intron | 15.0% |
| !! | AATTTAATTACAGTACAATT+GGG | + | chr3_1:75421638-75421657 | Msa0375640:intron | 15.0% |
| !!! | AAAATTGAGAAATATAGTTT+TGG | - | chr3_1:75421677-75421696 | None:intergenic | 15.0% |
| !!! | TCAATTTTACAAAATTGTTT+TGG | + | chr3_1:75421689-75421708 | Msa0375640:intron | 15.0% |
| !! | GTAGTTAATTAGTTAATTAA+TGG | + | chr3_1:75421993-75422012 | Msa0375640:three_prime_UTR | 15.0% |
| !!! | ATGCTGTTATTTAATTTATA+TGG | - | chr3_1:75422053-75422072 | None:intergenic | 15.0% |
| !!! | ACACAATATTAAAACACTTT+TGG | + | chr3_1:75421259-75421278 | Msa0375640:five_prime_UTR | 20.0% |
| !! | TCATCAATTCCATTATATAA+AGG | + | chr3_1:75421300-75421319 | Msa0375640:five_prime_UTR | 20.0% |
| !! | CATCAATTCCATTATATAAA+GGG | + | chr3_1:75421301-75421320 | Msa0375640:five_prime_UTR | 20.0% |
| !! | ACTTTAATTATATGTGCATA+TGG | + | chr3_1:75421728-75421747 | Msa0375640:intron | 20.0% |
| !!! | TTTTGGTTTATTTGATTCAT+TGG | + | chr3_1:75422287-75422306 | Msa0375640:three_prime_UTR | 20.0% |
| !!! | AATTAATAAAACTTCCGTTT+TGG | + | chr3_1:75422347-75422366 | Msa0375640:three_prime_UTR | 20.0% |
| !!! | ACACAATATTAAAACACTTT+TGG | + | chr3_1:75421259-75421278 | Msa0375640:five_prime_UTR | 20.0% |
| !! | TCATCAATTCCATTATATAA+AGG | + | chr3_1:75421300-75421319 | Msa0375640:five_prime_UTR | 20.0% |
| !! | CATCAATTCCATTATATAAA+GGG | + | chr3_1:75421301-75421320 | Msa0375640:five_prime_UTR | 20.0% |
| !! | ACTTTAATTATATGTGCATA+TGG | + | chr3_1:75421728-75421747 | Msa0375640:intron | 20.0% |
| !!! | TTTTGGTTTATTTGATTCAT+TGG | + | chr3_1:75422287-75422306 | Msa0375640:three_prime_UTR | 20.0% |
| !!! | AATTAATAAAACTTCCGTTT+TGG | + | chr3_1:75422347-75422366 | Msa0375640:three_prime_UTR | 20.0% |
| ! | ATTGTGTAGATTGAATATTG+TGG | - | chr3_1:75421246-75421265 | None:intergenic | 25.0% |
| ! | AGACTTATCCCTTTATATAA+TGG | - | chr3_1:75421312-75421331 | None:intergenic | 25.0% |
| !!! | GCTTTAAACTTTTTTCCATT+AGG | - | chr3_1:75421559-75421578 | None:intergenic | 25.0% |
| !! | AATGGAAAAAAGTTTAAAGC+TGG | + | chr3_1:75421559-75421578 | Msa0375640:CDS | 25.0% |
| !! | TTTGGTGATCAATATGTAAA+AGG | + | chr3_1:75422101-75422120 | Msa0375640:three_prime_UTR | 25.0% |
| !!! | TACGGTCTAAGTTTTTATTT+TGG | + | chr3_1:75422270-75422289 | Msa0375640:three_prime_UTR | 25.0% |
| !!! | ACGGAAGTTTTATTAATTGT+GGG | - | chr3_1:75422345-75422364 | None:intergenic | 25.0% |
| !!! | AACGGAAGTTTTATTAATTG+TGG | - | chr3_1:75422346-75422365 | None:intergenic | 25.0% |
| ! | ATTGTGTAGATTGAATATTG+TGG | - | chr3_1:75421246-75421265 | None:intergenic | 25.0% |
| ! | AGACTTATCCCTTTATATAA+TGG | - | chr3_1:75421312-75421331 | None:intergenic | 25.0% |
| !!! | GCTTTAAACTTTTTTCCATT+AGG | - | chr3_1:75421559-75421578 | None:intergenic | 25.0% |
| !! | AATGGAAAAAAGTTTAAAGC+TGG | + | chr3_1:75421559-75421578 | Msa0375640:CDS | 25.0% |
| !! | TTTGGTGATCAATATGTAAA+AGG | + | chr3_1:75422101-75422120 | Msa0375640:three_prime_UTR | 25.0% |
| !!! | TACGGTCTAAGTTTTTATTT+TGG | + | chr3_1:75422270-75422289 | Msa0375640:three_prime_UTR | 25.0% |
| !!! | ACGGAAGTTTTATTAATTGT+GGG | - | chr3_1:75422345-75422364 | None:intergenic | 25.0% |
| !!! | AACGGAAGTTTTATTAATTG+TGG | - | chr3_1:75422346-75422365 | None:intergenic | 25.0% |
| ! | TGGCTTTTCTTCATTAGTTA+AGG | - | chr3_1:75421199-75421218 | None:intergenic | 30.0% |
| ! | CATATTCTCACTATTTCTCT+TGG | - | chr3_1:75421395-75421414 | None:intergenic | 30.0% |
| AAATAGTGAGAATATGACTG+AGG | + | chr3_1:75421399-75421418 | Msa0375640:exon | 30.0% | |
| AATAGTGAGAATATGACTGA+GGG | + | chr3_1:75421400-75421419 | Msa0375640:exon | 30.0% | |
| ATATGGTAATTGATTGTTGC+AGG | + | chr3_1:75421745-75421764 | Msa0375640:intron | 30.0% | |
| TAAATAACAGCATGAGTACT+AGG | + | chr3_1:75422060-75422079 | Msa0375640:three_prime_UTR | 30.0% | |
| ! | CTACTAGCTATATGTTGATT+TGG | + | chr3_1:75422083-75422102 | Msa0375640:three_prime_UTR | 30.0% |
| ATCAATATGTAAAAGGAGTG+TGG | + | chr3_1:75422108-75422127 | Msa0375640:three_prime_UTR | 30.0% | |
| ! | AAGATCCCTTTGTTTGTTTA+CGG | + | chr3_1:75422252-75422271 | Msa0375640:three_prime_UTR | 30.0% |
| TTAGACCGTAAACAAACAAA+GGG | - | chr3_1:75422260-75422279 | None:intergenic | 30.0% | |
| !!! | CTCTCCCTTTTTTTTCTTTT+GGG | - | chr3_1:75421096-75421115 | None:intergenic | 30.0% |
| ! | TGGCTTTTCTTCATTAGTTA+AGG | - | chr3_1:75421199-75421218 | None:intergenic | 30.0% |
| ! | CATATTCTCACTATTTCTCT+TGG | - | chr3_1:75421395-75421414 | None:intergenic | 30.0% |
| AAATAGTGAGAATATGACTG+AGG | + | chr3_1:75421399-75421418 | Msa0375640:exon | 30.0% | |
| AATAGTGAGAATATGACTGA+GGG | + | chr3_1:75421400-75421419 | Msa0375640:exon | 30.0% | |
| ATATGGTAATTGATTGTTGC+AGG | + | chr3_1:75421745-75421764 | Msa0375640:intron | 30.0% | |
| TAAATAACAGCATGAGTACT+AGG | + | chr3_1:75422060-75422079 | Msa0375640:three_prime_UTR | 30.0% | |
| ! | CTACTAGCTATATGTTGATT+TGG | + | chr3_1:75422083-75422102 | Msa0375640:three_prime_UTR | 30.0% |
| ATCAATATGTAAAAGGAGTG+TGG | + | chr3_1:75422108-75422127 | Msa0375640:three_prime_UTR | 30.0% | |
| ! | AAGATCCCTTTGTTTGTTTA+CGG | + | chr3_1:75422252-75422271 | Msa0375640:three_prime_UTR | 30.0% |
| TTAGACCGTAAACAAACAAA+GGG | - | chr3_1:75422260-75422279 | None:intergenic | 30.0% | |
| AAGAAAAAAAAGGGAGAGGA+TGG | + | chr3_1:75421098-75421117 | Msa0375640:five_prime_UTR | 35.0% | |
| TGATGAATCTGTTGAGCTAT+GGG | - | chr3_1:75421286-75421305 | None:intergenic | 35.0% | |
| TTGATGAATCTGTTGAGCTA+TGG | - | chr3_1:75421287-75421306 | None:intergenic | 35.0% | |
| CTATAGCAATTCTAGTGAGA+TGG | - | chr3_1:75421356-75421375 | None:intergenic | 35.0% | |
| CATCTCACTAGAATTGCTAT+AGG | + | chr3_1:75421354-75421373 | Msa0375640:five_prime_UTR | 35.0% | |
| GGACATACAAAACTGATACT+TGG | + | chr3_1:75421533-75421552 | Msa0375640:CDS | 35.0% | |
| AAAACTGATACTTGGCCTAA+TGG | + | chr3_1:75421541-75421560 | Msa0375640:CDS | 35.0% | |
| ATACAACAACTGTAAGACAC+CGG | + | chr3_1:75421819-75421838 | Msa0375640:CDS | 35.0% | |
| TAATGGTCAATTAGCTGTAG+TGG | + | chr3_1:75422010-75422029 | Msa0375640:three_prime_UTR | 35.0% | |
| CTTAGACCGTAAACAAACAA+AGG | - | chr3_1:75422261-75422280 | None:intergenic | 35.0% | |
| !!! | CCTCTCCCTTTTTTTTCTTT+TGG | - | chr3_1:75421097-75421116 | None:intergenic | 35.0% |
| AAGAAAAAAAAGGGAGAGGA+TGG | + | chr3_1:75421098-75421117 | Msa0375640:five_prime_UTR | 35.0% | |
| TGATGAATCTGTTGAGCTAT+GGG | - | chr3_1:75421286-75421305 | None:intergenic | 35.0% | |
| TTGATGAATCTGTTGAGCTA+TGG | - | chr3_1:75421287-75421306 | None:intergenic | 35.0% | |
| CTATAGCAATTCTAGTGAGA+TGG | - | chr3_1:75421356-75421375 | None:intergenic | 35.0% | |
| CATCTCACTAGAATTGCTAT+AGG | + | chr3_1:75421354-75421373 | Msa0375640:five_prime_UTR | 35.0% | |
| GGACATACAAAACTGATACT+TGG | + | chr3_1:75421533-75421552 | Msa0375640:CDS | 35.0% | |
| AAAACTGATACTTGGCCTAA+TGG | + | chr3_1:75421541-75421560 | Msa0375640:CDS | 35.0% | |
| ATACAACAACTGTAAGACAC+CGG | + | chr3_1:75421819-75421838 | Msa0375640:CDS | 35.0% | |
| TAATGGTCAATTAGCTGTAG+TGG | + | chr3_1:75422010-75422029 | Msa0375640:three_prime_UTR | 35.0% | |
| CTTAGACCGTAAACAAACAA+AGG | - | chr3_1:75422261-75422280 | None:intergenic | 35.0% | |
| TATTGTGGATCTCACAAGCA+GGG | - | chr3_1:75421231-75421250 | None:intergenic | 40.0% | |
| ATATTGTGGATCTCACAAGC+AGG | - | chr3_1:75421232-75421251 | None:intergenic | 40.0% | |
| GATGAATCTGTTGAGCTATG+GGG | - | chr3_1:75421285-75421304 | None:intergenic | 40.0% | |
| TTCTAGTGAGATGGTTGAGT+TGG | - | chr3_1:75421347-75421366 | None:intergenic | 40.0% | |
| CACTTTCAGCCAGAAACAAA+AGG | - | chr3_1:75421474-75421493 | None:intergenic | 40.0% | |
| TGATTCAACCACACACAATG+TGG | + | chr3_1:75421777-75421796 | Msa0375640:CDS | 40.0% | |
| !! | GTTGTATCCACTTTTGTCCA+CGG | - | chr3_1:75421806-75421825 | None:intergenic | 40.0% |
| TACAACAACTGTAAGACACC+GGG | + | chr3_1:75421820-75421839 | Msa0375640:CDS | 40.0% | |
| ! | GTGCTAAAGTGTTCAGTTCA+GGG | + | chr3_1:75421845-75421864 | Msa0375640:CDS | 40.0% |
| TACTTCATATGCAGCTATCC+TGG | + | chr3_1:75421901-75421920 | Msa0375640:CDS | 40.0% | |
| AGAGGACTAAACTGCATAGA+TGG | - | chr3_1:75421953-75421972 | None:intergenic | 40.0% | |
| ! | TATGTAAAAGGAGTGTGGTG+AGG | + | chr3_1:75422113-75422132 | Msa0375640:three_prime_UTR | 40.0% |
| TATTGTGGATCTCACAAGCA+GGG | - | chr3_1:75421231-75421250 | None:intergenic | 40.0% | |
| ATATTGTGGATCTCACAAGC+AGG | - | chr3_1:75421232-75421251 | None:intergenic | 40.0% | |
| GATGAATCTGTTGAGCTATG+GGG | - | chr3_1:75421285-75421304 | None:intergenic | 40.0% | |
| TTCTAGTGAGATGGTTGAGT+TGG | - | chr3_1:75421347-75421366 | None:intergenic | 40.0% | |
| CACTTTCAGCCAGAAACAAA+AGG | - | chr3_1:75421474-75421493 | None:intergenic | 40.0% | |
| TGATTCAACCACACACAATG+TGG | + | chr3_1:75421777-75421796 | Msa0375640:CDS | 40.0% | |
| !! | GTTGTATCCACTTTTGTCCA+CGG | - | chr3_1:75421806-75421825 | None:intergenic | 40.0% |
| TACAACAACTGTAAGACACC+GGG | + | chr3_1:75421820-75421839 | Msa0375640:CDS | 40.0% | |
| ! | GTGCTAAAGTGTTCAGTTCA+GGG | + | chr3_1:75421845-75421864 | Msa0375640:CDS | 40.0% |
| TACTTCATATGCAGCTATCC+TGG | + | chr3_1:75421901-75421920 | Msa0375640:CDS | 40.0% | |
| AGAGGACTAAACTGCATAGA+TGG | - | chr3_1:75421953-75421972 | None:intergenic | 40.0% | |
| ! | TATGTAAAAGGAGTGTGGTG+AGG | + | chr3_1:75422113-75422132 | Msa0375640:three_prime_UTR | 40.0% |
| ! | AAGGGAGAGGATGGTAATGT+CGG | + | chr3_1:75421107-75421126 | Msa0375640:five_prime_UTR | 45.0% |
| TTGGATGCTACTCACTAGCT+AGG | - | chr3_1:75421135-75421154 | None:intergenic | 45.0% | |
| !! | GATGGTTGAGTTGGTTTGCA+AGG | - | chr3_1:75421338-75421357 | None:intergenic | 45.0% |
| GAGAATATGACTGAGGGAAG+AGG | + | chr3_1:75421406-75421425 | Msa0375640:exon | 45.0% | |
| AGGCAGTGCATCTATGAACA+TGG | + | chr3_1:75421426-75421445 | Msa0375640:CDS | 45.0% | |
| !! | ACTGCTGTGCCTTTTGTTTC+TGG | + | chr3_1:75421462-75421481 | Msa0375640:CDS | 45.0% |
| AATGCAGCATCTTACACCGT+TGG | + | chr3_1:75421496-75421515 | Msa0375640:CDS | 45.0% | |
| ! | GGTGCTAAAGTGTTCAGTTC+AGG | + | chr3_1:75421844-75421863 | Msa0375640:CDS | 45.0% |
| GACCAAATCAGGCTATCAAG+AGG | + | chr3_1:75421871-75421890 | Msa0375640:CDS | 45.0% | |
| ! | GTCCTCTTGATAGCCTGATT+TGG | - | chr3_1:75421876-75421895 | None:intergenic | 45.0% |
| TGGAAACCTTCATCCCAGAT+TGG | - | chr3_1:75421933-75421952 | None:intergenic | 45.0% | |
| TAGTCAAGTCACGTAGCTAG+AGG | - | chr3_1:75421971-75421990 | None:intergenic | 45.0% | |
| ! | TTTTTGTCGTGTGCTGTGTG+AGG | + | chr3_1:75422173-75422192 | Msa0375640:three_prime_UTR | 45.0% |
| ! | AAGGGAGAGGATGGTAATGT+CGG | + | chr3_1:75421107-75421126 | Msa0375640:five_prime_UTR | 45.0% |
| TTGGATGCTACTCACTAGCT+AGG | - | chr3_1:75421135-75421154 | None:intergenic | 45.0% | |
| !! | GATGGTTGAGTTGGTTTGCA+AGG | - | chr3_1:75421338-75421357 | None:intergenic | 45.0% |
| GAGAATATGACTGAGGGAAG+AGG | + | chr3_1:75421406-75421425 | Msa0375640:exon | 45.0% | |
| AGGCAGTGCATCTATGAACA+TGG | + | chr3_1:75421426-75421445 | Msa0375640:CDS | 45.0% | |
| !! | ACTGCTGTGCCTTTTGTTTC+TGG | + | chr3_1:75421462-75421481 | Msa0375640:CDS | 45.0% |
| AATGCAGCATCTTACACCGT+TGG | + | chr3_1:75421496-75421515 | Msa0375640:CDS | 45.0% | |
| ! | GGTGCTAAAGTGTTCAGTTC+AGG | + | chr3_1:75421844-75421863 | Msa0375640:CDS | 45.0% |
| GACCAAATCAGGCTATCAAG+AGG | + | chr3_1:75421871-75421890 | Msa0375640:CDS | 45.0% | |
| ! | GTCCTCTTGATAGCCTGATT+TGG | - | chr3_1:75421876-75421895 | None:intergenic | 45.0% |
| TGGAAACCTTCATCCCAGAT+TGG | - | chr3_1:75421933-75421952 | None:intergenic | 45.0% | |
| TAGTCAAGTCACGTAGCTAG+AGG | - | chr3_1:75421971-75421990 | None:intergenic | 45.0% | |
| ! | TTTTTGTCGTGTGCTGTGTG+AGG | + | chr3_1:75422173-75422192 | Msa0375640:three_prime_UTR | 45.0% |
| TCTCACAAGCAGGGATAGGT+TGG | - | chr3_1:75421222-75421241 | None:intergenic | 50.0% | |
| TGGATCTCACAAGCAGGGAT+AGG | - | chr3_1:75421226-75421245 | None:intergenic | 50.0% | |
| ! | GTTTTGTATGTCCATCCCCC+AGG | - | chr3_1:75421526-75421545 | None:intergenic | 50.0% |
| AACAACTGTAAGACACCGGG+AGG | + | chr3_1:75421823-75421842 | Msa0375640:CDS | 50.0% | |
| CTGAACACTTTAGCACCTCC+CGG | - | chr3_1:75421841-75421860 | None:intergenic | 50.0% | |
| GTTCAGGGAGTGACCAAATC+AGG | + | chr3_1:75421860-75421879 | Msa0375640:CDS | 50.0% | |
| TATCCTGGTCACTGCCAATC+TGG | + | chr3_1:75421916-75421935 | Msa0375640:CDS | 50.0% | |
| ATCCTGGTCACTGCCAATCT+GGG | + | chr3_1:75421917-75421936 | Msa0375640:CDS | 50.0% | |
| ! | TCACTGCCAATCTGGGATGA+AGG | + | chr3_1:75421924-75421943 | Msa0375640:CDS | 50.0% |
| ! | GTAAAAGGAGTGTGGTGAGG+TGG | + | chr3_1:75422116-75422135 | Msa0375640:three_prime_UTR | 50.0% |
| TCTCACAAGCAGGGATAGGT+TGG | - | chr3_1:75421222-75421241 | None:intergenic | 50.0% | |
| TGGATCTCACAAGCAGGGAT+AGG | - | chr3_1:75421226-75421245 | None:intergenic | 50.0% | |
| ! | GTTTTGTATGTCCATCCCCC+AGG | - | chr3_1:75421526-75421545 | None:intergenic | 50.0% |
| AACAACTGTAAGACACCGGG+AGG | + | chr3_1:75421823-75421842 | Msa0375640:CDS | 50.0% | |
| CTGAACACTTTAGCACCTCC+CGG | - | chr3_1:75421841-75421860 | None:intergenic | 50.0% | |
| GTTCAGGGAGTGACCAAATC+AGG | + | chr3_1:75421860-75421879 | Msa0375640:CDS | 50.0% | |
| TATCCTGGTCACTGCCAATC+TGG | + | chr3_1:75421916-75421935 | Msa0375640:CDS | 50.0% | |
| ATCCTGGTCACTGCCAATCT+GGG | + | chr3_1:75421917-75421936 | Msa0375640:CDS | 50.0% | |
| ! | TCACTGCCAATCTGGGATGA+AGG | + | chr3_1:75421924-75421943 | Msa0375640:CDS | 50.0% |
| ! | GTAAAAGGAGTGTGGTGAGG+TGG | + | chr3_1:75422116-75422135 | Msa0375640:three_prime_UTR | 50.0% |
| ! | CACAAGCAGGGATAGGTTGG+TGG | - | chr3_1:75421219-75421238 | None:intergenic | 55.0% |
| GCAGCATCTTACACCGTTGG+AGG | + | chr3_1:75421499-75421518 | Msa0375640:CDS | 55.0% | |
| TCTTACACCGTTGGAGGACC+TGG | + | chr3_1:75421505-75421524 | Msa0375640:CDS | 55.0% | |
| CTTACACCGTTGGAGGACCT+GGG | + | chr3_1:75421506-75421525 | Msa0375640:CDS | 55.0% | |
| TTACACCGTTGGAGGACCTG+GGG | + | chr3_1:75421507-75421526 | Msa0375640:CDS | 55.0% | |
| CACGGCAACCACATTGTGTG+TGG | - | chr3_1:75421788-75421807 | None:intergenic | 55.0% | |
| CACACACAATGTGGTTGCCG+TGG | + | chr3_1:75421786-75421805 | Msa0375640:CDS | 55.0% | |
| GTGGTTGCCGTGGACAAAAG+TGG | + | chr3_1:75421796-75421815 | Msa0375640:CDS | 55.0% | |
| ATCCCAGATTGGCAGTGACC+AGG | - | chr3_1:75421922-75421941 | None:intergenic | 55.0% | |
| ! | CACAAGCAGGGATAGGTTGG+TGG | - | chr3_1:75421219-75421238 | None:intergenic | 55.0% |
| GCAGCATCTTACACCGTTGG+AGG | + | chr3_1:75421499-75421518 | Msa0375640:CDS | 55.0% | |
| TCTTACACCGTTGGAGGACC+TGG | + | chr3_1:75421505-75421524 | Msa0375640:CDS | 55.0% | |
| CTTACACCGTTGGAGGACCT+GGG | + | chr3_1:75421506-75421525 | Msa0375640:CDS | 55.0% | |
| TTACACCGTTGGAGGACCTG+GGG | + | chr3_1:75421507-75421526 | Msa0375640:CDS | 55.0% | |
| CACGGCAACCACATTGTGTG+TGG | - | chr3_1:75421788-75421807 | None:intergenic | 55.0% | |
| CACACACAATGTGGTTGCCG+TGG | + | chr3_1:75421786-75421805 | Msa0375640:CDS | 55.0% | |
| GTGGTTGCCGTGGACAAAAG+TGG | + | chr3_1:75421796-75421815 | Msa0375640:CDS | 55.0% | |
| ATCCCAGATTGGCAGTGACC+AGG | - | chr3_1:75421922-75421941 | None:intergenic | 55.0% | |
| TACACCGTTGGAGGACCTGG+GGG | + | chr3_1:75421508-75421527 | Msa0375640:CDS | 60.0% | |
| TACACCGTTGGAGGACCTGG+GGG | + | chr3_1:75421508-75421527 | Msa0375640:CDS | 60.0% | |
| CCATCCCCCAGGTCCTCCAA+CGG | - | chr3_1:75421515-75421534 | None:intergenic | 65.0% | |
| CCATCCCCCAGGTCCTCCAA+CGG | - | chr3_1:75421515-75421534 | None:intergenic | 65.0% | |
| CCGTTGGAGGACCTGGGGGA+TGG | + | chr3_1:75421512-75421531 | Msa0375640:CDS | 70.0% | |
| CCGTTGGAGGACCTGGGGGA+TGG | + | chr3_1:75421512-75421531 | Msa0375640:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 75421096 | 75422373 | 75421096 | ID=Msa0375640;Name=Msa0375640 |
| chr3_1 | mRNA | 75421096 | 75422373 | 75421096 | ID=Msa0375640-mRNA-1;Parent=Msa0375640;Name=Msa0375640-mRNA-1;_AED=0.07;_eAED=0.07;_QI=316|1|1|1|1|1|2|407|126 |
| chr3_1 | exon | 75421096 | 75421592 | 75421096 | ID=Msa0375640-mRNA-1:exon:17684;Parent=Msa0375640-mRNA-1 |
| chr3_1 | exon | 75421767 | 75422373 | 75421767 | ID=Msa0375640-mRNA-1:exon:17685;Parent=Msa0375640-mRNA-1 |
| chr3_1 | five_prime_UTR | 75421096 | 75421411 | 75421096 | ID=Msa0375640-mRNA-1:five_prime_utr;Parent=Msa0375640-mRNA-1 |
| chr3_1 | CDS | 75421412 | 75421592 | 75421412 | ID=Msa0375640-mRNA-1:cds;Parent=Msa0375640-mRNA-1 |
| chr3_1 | CDS | 75421767 | 75421966 | 75421767 | ID=Msa0375640-mRNA-1:cds;Parent=Msa0375640-mRNA-1 |
| chr3_1 | three_prime_UTR | 75421967 | 75422373 | 75421967 | ID=Msa0375640-mRNA-1:three_prime_utr;Parent=Msa0375640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
