AlfalfaGEDB | Msa0334660

M. sativa cultivar zhongmu-4 / Msa0334660

KEGG: -
GO: -
PFAM: PF03181.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0334660	XP_003596535.2	95.890	219	9	0	45	263	55	273	4.01e-157	447

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0334660	sp\|Q43675\|USP_VICFA	42.060	233	122	5	33	255	35	264	2.97e-55	181

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0334660	G7ITL0	95.890	219	9	0	45	263	55	273	1.92e-157	447

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0019900	Msa0334660	0.807787	4.261819e-50	-8.615850e-47
Msa0025160	Msa0334660	0.856051	4.176264e-62	-8.615850e-47
Msa0033220	Msa0334660	0.812570	3.966607e-51	-8.615850e-47
Msa0035380	Msa0334660	0.806320	8.711331e-50	-8.615850e-47
Msa0038530	Msa0334660	0.816007	6.902877e-52	-8.615850e-47
Msa0044160	Msa0334660	0.803800	2.932301e-49	-8.615850e-47
Msa0072520	Msa0334660	0.846096	2.691876e-59	-8.615850e-47
Msa0176060	Msa0334660	0.827435	1.566858e-54	-8.615850e-47
Msa0183710	Msa0334660	0.808650	2.790835e-50	-8.615850e-47
Msa0199650	Msa0334660	0.800336	1.511864e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0334660	MtrunA17_Chr2g0318901	95.890	219	9	0	45	263	55	273	3.69e-161	447
Msa0334660	MtrunA17_Chr2g0318871	81.735	219	40	0	45	263	55	273	1.41e-137	388
Msa0334660	MtrunA17_Chr2g0318931	65.877	211	67	2	46	251	62	272	2.64e-99	291
Msa0334660	MtrunA17_Chr8g0355861	48.980	196	92	3	62	250	67	261	6.43e-66	206
Msa0334660	MtrunA17_Chr8g0355321	38.489	278	110	5	33	250	27	303	1.71e-63	201
Msa0334660	MtrunA17_Chr8g0355871	47.449	196	94	3	61	249	29	222	1.49e-62	196
Msa0334660	MtrunA17_Chr1g0168781	42.060	233	122	5	33	255	36	265	1.33e-58	187
Msa0334660	MtrunA17_Chr8g0355311	50.000	170	78	2	86	255	34	196	4.88e-58	183
Msa0334660	MtrunA17_Chr8g0355841	41.102	236	112	4	49	258	284	518	3.36e-56	188
Msa0334660	MtrunA17_Chr8g0355331	47.059	170	83	2	87	256	266	428	7.24e-54	180

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0334660	AT5G25610.1	33.645	214	113	8	63	247	176	389	6.60e-29	113
Msa0334660	AT1G49320.1	33.974	156	81	7	111	248	127	278	1.01e-15	75.5

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Find 50 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGTTTGTCATTTCCT+TGG	0.406653	2_4:-53292594	Msa0334660:CDS
AAATCCAATTAATGTTCCTA+AGG	0.483573	2_4:+53292914	None:intergenic
AAATCCTTAGGAACATTAAT+TGG	0.198984	2_4:-53292918	Msa0334660:CDS
AACACCAAAAGGTTGTGCAA+AGG	0.591897	2_4:+53293046	None:intergenic
AACAGCAACATTGGCACCAT+AGG	0.567015	2_4:+53292527	None:intergenic
ACACCAAAAGGTTGTGCAAA+GGG	0.481077	2_4:+53293047	None:intergenic
AGAAAGCAGTGATGTGTCAT+AGG	0.434072	2_4:-53292794	Msa0334660:CDS
AGAAGGATACACATTTAATG+AGG	0.587845	2_4:-53292988	Msa0334660:CDS
AGCAAAGATTGTGCCTCTTT+AGG	0.246185	2_4:+53292372	None:intergenic
ATAAAATAGCCTTATTTCCA+AGG	0.498608	2_4:+53292577	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCAATTGAGTTATACTTACA+GGG	+	chr2_4:53292239-53292258	None:intergenic	30.0%
CTTGAGTTAAGTTTAACTGA+CGG	-	chr2_4:53292365-53292384	Msa0334660:three_prime_UTR	30.0%
TTGAGTTAAGTTTAACTGAC+GGG	-	chr2_4:53292366-53292385	Msa0334660:three_prime_UTR	30.0%
GACAATGCATAAAATATGCA+AGG	+	chr2_4:53292533-53292552	None:intergenic	30.0%
ATATCTAATAAACCGACTAG+TGG	-	chr2_4:53292593-53292612	Msa0334660:CDS	30.0%
TCTCAACACTTAAGAATTCT+TGG	-	chr2_4:53292800-53292819	Msa0334660:CDS	30.0%
AGTTTATATAGTGCATCAGT+TGG	+	chr2_4:53292836-53292855	None:intergenic	30.0%
AAATTATTATTTGTGGGGGT+TGG	-	chr2_4:53292883-53292902	Msa0334660:CDS	30.0%
ATCCATGTATAAACACCAAA+AGG	+	chr2_4:53293669-53293688	None:intergenic	30.0%
AGAAGGATACACATTTAATG+AGG	-	chr2_4:53293713-53293732	Msa0334660:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	53292208	53294515	53292208	ID=Msa0334660;Name=Msa0334660
chr2_4	mRNA	53292208	53294515	53292208	ID=Msa0334660-mRNA-1;Parent=Msa0334660;Name=Msa0334660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0.33\|0.66\|0\|0.33\|3\|316\|263
chr2_4	exon	53292208	53293185	53292208	ID=Msa0334660-mRNA-1:exon:16123;Parent=Msa0334660-mRNA-1
chr2_4	exon	53293967	53294064	53293967	ID=Msa0334660-mRNA-1:exon:16122;Parent=Msa0334660-mRNA-1
chr2_4	exon	53294484	53294515	53294484	ID=Msa0334660-mRNA-1:exon:16121;Parent=Msa0334660-mRNA-1
chr2_4	CDS	53294484	53294515	53294484	ID=Msa0334660-mRNA-1:cds;Parent=Msa0334660-mRNA-1
chr2_4	CDS	53293967	53294064	53293967	ID=Msa0334660-mRNA-1:cds;Parent=Msa0334660-mRNA-1
chr2_4	CDS	53292524	53293185	53292524	ID=Msa0334660-mRNA-1:cds;Parent=Msa0334660-mRNA-1
chr2_4	three_prime_UTR	53292208	53292523	53292208	ID=Msa0334660-mRNA-1:three_prime_utr;Parent=Msa0334660-mRNA-1

Gene Sequence

>Msa0334660

ATGAATTGTCAATGCATCAAAATTCAGTCCCTTTCAAACCTCACATCTTGCTCACTTGCTCAGTTACTTTCCATTGTTGATTGCAAGAATGGGATTTCATCACCTTCTCCTTTTCATTTCAGTTCTCTCTGTGTTGAAATTGGTGACCTACCCATGGAAGTTGACGACACACAATATCCAAAAACTTTTTTCTATGAACATGAGCTTTATCCAGGAAAAACAATGAAAGTGCAATTCAGCAAGCGTCCCTTTGCACAACCTTTTGGTGTTTATACATGGATGCGCGAAATTAAAGACATTGAAAAAGAAGGATACACATTTAATGAGGTATGTGTAAAGAAAGCACCTGCAGAAGGAGAACAAAAATTTTGTGCAAAATCCTTAGGAACATTAATTGGATTTGCAATTTCTAAGCTTGGAAAAAATATTCAATCACTTTCAAGCTCCTTCATAGATAAACATGAACAATACAAAATAGATTCAGTGCAAAATCTTGGAGAGAAAGCAGTGATGTGTCATAGGTTGAATTTCCAAAAGGTTGTATTTTATTGTCATGAAATTCATGGAACAACAGCTTTTATGGTTCCATTGGTGGCAAATGATGGAACAAAAACTCAAGCACTAGCTGTTTGTCATGCTGATACTTCAGGCATGAATCATGAAATGCTGCAACAGATTATGAAAGCTGATCCTGGTAGTAAACCTGTTTGTCATTTCCTTGGAAATAAGGCTATTTTATGGGTACCTAATTTAGGTTTGGACAATGCCTATGGTGCCAATGTTGCTGTTTAG

Protein sequence

>Msa0334660

MNCQCIKIQSLSNLTSCSLAQLLSIVDCKNGISSPSPFHFSSLCVEIGDLPMEVDDTQYPKTFFYEHELYPGKTMKVQFSKRPFAQPFGVYTWMREIKDIEKEGYTFNEVCVKKAPAEGEQKFCAKSLGTLIGFAISKLGKNIQSLSSSFIDKHEQYKIDSVQNLGEKAVMCHRLNFQKVVFYCHEIHGTTAFMVPLVANDGTKTQALAVCHADTSGMNHEMLQQIMKADPGSKPVCHFLGNKAILWVPNLGLDNAYGANVAV*