Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686800 | XP_003607178.1 | 97.778 | 405 | 9 | 0 | 1 | 405 | 1 | 405 | 0.0 | 817 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686800 | sp|O22469|MSI3_ARATH | 63.342 | 401 | 136 | 5 | 1 | 391 | 1 | 400 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686800 | G7JMD2 | 97.778 | 405 | 9 | 0 | 1 | 405 | 1 | 405 | 0.0 | 817 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005020 | Msa0686800 | 0.834146 | 3.548293e-56 | -8.615850e-47 |
| Msa0035270 | Msa0686800 | 0.803870 | 2.835542e-49 | -8.615850e-47 |
| Msa0035340 | Msa0686800 | 0.816875 | 4.412967e-52 | -8.615850e-47 |
| Msa0035380 | Msa0686800 | 0.804671 | 1.931339e-49 | -8.615850e-47 |
| Msa0053070 | Msa0686800 | 0.840052 | 1.096580e-57 | -8.615850e-47 |
| Msa0056180 | Msa0686800 | 0.804800 | 1.815188e-49 | -8.615850e-47 |
| Msa0065020 | Msa0686800 | 0.804443 | 2.154913e-49 | -8.615850e-47 |
| Msa0074030 | Msa0686800 | 0.806374 | 8.487034e-50 | -8.615850e-47 |
| Msa0098410 | Msa0686800 | 0.830260 | 3.245571e-55 | -8.615850e-47 |
| Msa0606580 | Msa0686800 | 0.984553 | 6.775325e-161 | -8.615850e-47 |
| Msa0647280 | Msa0686800 | 0.997752 | 1.735427e-248 | -8.615850e-47 |
| Msa0686800 | Msa0709440 | 0.807962 | 3.911154e-50 | -8.615850e-47 |
| Msa0686800 | Msa0747740 | 0.825846 | 3.752576e-54 | -8.615850e-47 |
| Msa0686800 | Msa0838240 | 0.805463 | 1.319175e-49 | -8.615850e-47 |
| Msa0686800 | Msa0881290 | 0.811468 | 6.896275e-51 | -8.615850e-47 |
| Msa0686800 | Msa1024180 | 0.860102 | 2.609764e-63 | -8.615850e-47 |
| Msa0686800 | Msa1078150 | 0.812215 | 4.743460e-51 | -8.615850e-47 |
| Msa0686800 | Msa1078870 | 0.812385 | 4.354066e-51 | -8.615850e-47 |
| Msa0686800 | Msa1084530 | 0.802144 | 6.448015e-49 | -8.615850e-47 |
| Msa0686800 | Msa1094010 | 0.816699 | 4.833126e-52 | -8.615850e-47 |
| Msa0686800 | Msa1125820 | 0.806773 | 6.988731e-50 | -8.615850e-47 |
| Msa0686800 | Msa1125990 | 0.808954 | 2.402363e-50 | -8.615850e-47 |
| Msa0686800 | Msa1169180 | 0.801976 | 6.984342e-49 | -8.615850e-47 |
| Msa0686800 | Msa1171290 | 0.802121 | 6.520130e-49 | -8.615850e-47 |
| Msa0686800 | Msa1174780 | 0.828524 | 8.571887e-55 | -8.615850e-47 |
| Msa0686800 | Msa1217050 | 0.812160 | 4.876446e-51 | -8.615850e-47 |
| Msa0686800 | Msa1262590 | 0.806958 | 6.386744e-50 | -8.615850e-47 |
| Msa0686800 | Msa1276830 | 0.808846 | 2.534029e-50 | -8.615850e-47 |
| Msa0686800 | Msa1314940 | 0.803434 | 3.492582e-49 | -8.615850e-47 |
| Msa0686800 | Msa1343260 | 0.802717 | 4.913058e-49 | -8.615850e-47 |
| Msa0686800 | Msa1414170 | 0.809131 | 2.201647e-50 | -8.615850e-47 |
| Msa0686800 | Msa1421570 | 0.833192 | 6.141133e-56 | -8.615850e-47 |
| Msa0686800 | Msa1426120 | 0.808707 | 2.712875e-50 | -8.615850e-47 |
| Msa0686800 | Msa1440880 | 0.805662 | 1.197774e-49 | -8.615850e-47 |
| Msa0686800 | Msa1462490 | 0.805982 | 1.026314e-49 | -8.615850e-47 |
| Msa0189700 | Msa0686800 | 0.811331 | 7.386243e-51 | -8.615850e-47 |
| Msa0202290 | Msa0686800 | 0.802864 | 4.583395e-49 | -8.615850e-47 |
| Msa0232010 | Msa0686800 | 0.809128 | 2.205074e-50 | -8.615850e-47 |
| Msa0232080 | Msa0686800 | 0.808387 | 3.174890e-50 | -8.615850e-47 |
| Msa0367520 | Msa0686800 | 0.804746 | 1.863241e-49 | -8.615850e-47 |
| Msa0422050 | Msa0686800 | 0.806141 | 9.500885e-50 | -8.615850e-47 |
| Msa0460780 | Msa0686800 | 0.805855 | 1.091183e-49 | -8.615850e-47 |
| Msa0481890 | Msa0686800 | 0.807609 | 4.650542e-50 | -8.615850e-47 |
| Msa0283800 | Msa0686800 | 0.808364 | 3.212421e-50 | -8.615850e-47 |
| Msa0321920 | Msa0686800 | 0.817215 | 3.701536e-52 | -8.615850e-47 |
| Msa0532050 | Msa0686800 | 0.851181 | 1.048798e-60 | -8.615850e-47 |
| Msa0567170 | Msa0686800 | 0.806626 | 7.508568e-50 | -8.615850e-47 |
| Msa0591170 | Msa0686800 | 0.808348 | 3.237717e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686800 | MtrunA17_Chr4g0036951 | 97.778 | 405 | 9 | 0 | 1 | 405 | 1 | 405 | 0.0 | 817 |
| Msa0686800 | MtrunA17_Chr4g0052291 | 53.671 | 395 | 166 | 5 | 17 | 395 | 21 | 414 | 4.99e-144 | 416 |
| Msa0686800 | MtrunA17_Chr2g0299271 | 29.742 | 427 | 255 | 9 | 11 | 395 | 56 | 479 | 1.83e-57 | 196 |
| Msa0686800 | MtrunA17_Chr2g0330271 | 29.128 | 436 | 252 | 11 | 13 | 395 | 17 | 448 | 5.78e-49 | 172 |
| Msa0686800 | MtrunA17_Chr8g0377441 | 27.852 | 298 | 182 | 7 | 109 | 377 | 157 | 450 | 3.48e-28 | 115 |
| Msa0686800 | MtrunA17_Chr5g0406931 | 27.632 | 304 | 180 | 12 | 107 | 377 | 142 | 438 | 9.63e-23 | 99.8 |
| Msa0686800 | MtrunA17_Chr2g0283891 | 26.891 | 238 | 164 | 4 | 99 | 336 | 47 | 274 | 2.09e-20 | 91.3 |
| Msa0686800 | MtrunA17_Chr6g0448921 | 32.039 | 206 | 121 | 9 | 153 | 354 | 50 | 240 | 3.46e-15 | 77.8 |
| Msa0686800 | MtrunA17_Chr5g0401661 | 26.556 | 241 | 129 | 8 | 158 | 355 | 433 | 668 | 3.22e-13 | 71.6 |
| Msa0686800 | MtrunA17_Chr3g0143791 | 26.131 | 199 | 139 | 5 | 183 | 377 | 141 | 335 | 2.99e-12 | 67.4 |
| Msa0686800 | MtrunA17_Chr4g0053651 | 23.950 | 238 | 147 | 9 | 158 | 387 | 326 | 537 | 1.16e-11 | 66.6 |
| Msa0686800 | MtrunA17_Chr3g0093681 | 27.053 | 207 | 127 | 7 | 177 | 383 | 370 | 552 | 1.26e-11 | 66.2 |
| Msa0686800 | MtrunA17_Chr7g0253861 | 26.364 | 220 | 145 | 8 | 111 | 328 | 49 | 253 | 1.49e-11 | 65.5 |
| Msa0686800 | MtrunA17_Chr5g0438901 | 26.190 | 210 | 140 | 7 | 125 | 330 | 383 | 581 | 1.59e-11 | 66.2 |
| Msa0686800 | MtrunA17_Chr5g0401671 | 25.116 | 215 | 114 | 7 | 158 | 329 | 343 | 553 | 2.91e-11 | 65.1 |
| Msa0686800 | MtrunA17_Chr2g0281451 | 29.897 | 194 | 116 | 9 | 178 | 363 | 73 | 254 | 8.53e-11 | 63.9 |
| Msa0686800 | MtrunA17_Chr8g0352821 | 26.906 | 223 | 133 | 9 | 178 | 393 | 282 | 481 | 9.21e-11 | 63.9 |
| Msa0686800 | MtrunA17_Chr5g0396821 | 28.221 | 163 | 108 | 3 | 168 | 330 | 776 | 929 | 9.30e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686800 | AT4G35050.1 | 63.342 | 401 | 136 | 5 | 1 | 391 | 1 | 400 | 0.0 | 534 |
| Msa0686800 | AT2G16780.1 | 63.524 | 403 | 139 | 4 | 1 | 395 | 1 | 403 | 0.0 | 531 |
| Msa0686800 | AT5G58230.1 | 53.133 | 399 | 170 | 4 | 13 | 395 | 17 | 414 | 1.26e-148 | 428 |
| Msa0686800 | AT2G19520.1 | 29.792 | 433 | 252 | 8 | 6 | 391 | 57 | 484 | 9.70e-57 | 194 |
| Msa0686800 | AT4G29730.1 | 27.816 | 435 | 256 | 9 | 6 | 395 | 47 | 468 | 8.30e-51 | 178 |
| Msa0686800 | AT4G29730.3 | 27.763 | 389 | 228 | 10 | 6 | 355 | 47 | 421 | 3.40e-41 | 151 |
| Msa0686800 | AT4G29730.2 | 27.763 | 389 | 228 | 10 | 6 | 355 | 47 | 421 | 3.40e-41 | 151 |
| Msa0686800 | AT2G19540.1 | 30.844 | 308 | 173 | 11 | 103 | 377 | 149 | 449 | 3.71e-32 | 127 |
| Msa0686800 | AT1G29260.1 | 26.286 | 175 | 123 | 1 | 153 | 327 | 97 | 265 | 1.74e-16 | 80.1 |
| Msa0686800 | AT5G08390.1 | 27.751 | 209 | 127 | 6 | 176 | 384 | 72 | 256 | 7.30e-15 | 77.0 |
| Msa0686800 | AT5G23430.3 | 27.536 | 207 | 126 | 6 | 178 | 384 | 74 | 256 | 5.94e-14 | 74.3 |
| Msa0686800 | AT5G23430.2 | 27.536 | 207 | 126 | 6 | 178 | 384 | 74 | 256 | 5.94e-14 | 74.3 |
| Msa0686800 | AT5G23430.1 | 27.536 | 207 | 126 | 6 | 178 | 384 | 74 | 256 | 6.27e-14 | 74.3 |
| Msa0686800 | AT1G20540.1 | 27.545 | 167 | 111 | 4 | 218 | 378 | 175 | 337 | 4.40e-13 | 70.5 |
| Msa0686800 | AT3G63460.3 | 24.206 | 252 | 161 | 7 | 158 | 399 | 118 | 349 | 6.09e-13 | 71.2 |
| Msa0686800 | AT3G63460.2 | 24.206 | 252 | 161 | 7 | 158 | 399 | 118 | 349 | 6.61e-13 | 71.2 |
| Msa0686800 | AT3G63460.1 | 24.206 | 252 | 161 | 7 | 158 | 399 | 118 | 349 | 6.85e-13 | 71.2 |
| Msa0686800 | AT5G67320.1 | 25.210 | 238 | 144 | 9 | 158 | 387 | 361 | 572 | 8.01e-13 | 70.5 |
| Msa0686800 | AT2G32950.1 | 27.461 | 193 | 127 | 5 | 139 | 328 | 395 | 577 | 3.03e-12 | 68.9 |
| Msa0686800 | AT4G11110.1 | 29.268 | 164 | 107 | 3 | 167 | 330 | 777 | 931 | 3.31e-12 | 68.9 |
| Msa0686800 | AT2G32950.2 | 27.461 | 193 | 127 | 5 | 139 | 328 | 282 | 464 | 3.39e-12 | 68.6 |
| Msa0686800 | AT4G35370.1 | 22.422 | 223 | 144 | 3 | 172 | 386 | 177 | 378 | 4.39e-12 | 67.8 |
| Msa0686800 | AT5G13480.4 | 31.544 | 149 | 93 | 4 | 178 | 326 | 210 | 349 | 1.47e-11 | 66.6 |
| Msa0686800 | AT5G13480.3 | 31.544 | 149 | 93 | 4 | 178 | 326 | 210 | 349 | 1.48e-11 | 66.6 |
| Msa0686800 | AT5G13480.1 | 31.544 | 149 | 93 | 4 | 178 | 326 | 222 | 361 | 1.59e-11 | 66.6 |
| Msa0686800 | AT5G13480.2 | 31.544 | 149 | 93 | 4 | 178 | 326 | 233 | 372 | 1.61e-11 | 66.6 |
| Msa0686800 | AT1G61210.3 | 29.801 | 151 | 96 | 5 | 178 | 328 | 73 | 213 | 4.68e-11 | 65.5 |
| Msa0686800 | AT1G61210.2 | 29.801 | 151 | 96 | 5 | 178 | 328 | 73 | 213 | 4.83e-11 | 65.5 |
| Msa0686800 | AT1G61210.1 | 29.801 | 151 | 96 | 5 | 178 | 328 | 73 | 213 | 4.92e-11 | 65.5 |
| Msa0686800 | AT1G11160.2 | 29.801 | 151 | 96 | 6 | 178 | 328 | 73 | 213 | 8.38e-11 | 64.7 |
| Msa0686800 | AT1G11160.1 | 29.801 | 151 | 96 | 6 | 178 | 328 | 73 | 213 | 8.61e-11 | 64.3 |
| Msa0686800 | AT1G11160.3 | 29.801 | 151 | 96 | 6 | 178 | 328 | 31 | 171 | 9.04e-11 | 64.3 |
| Msa0686800 | AT1G11160.4 | 29.801 | 151 | 96 | 6 | 178 | 328 | 73 | 213 | 9.68e-11 | 64.3 |
Find 146 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACTGCAAGTTGGTAATT+TGG | 0.200192 | 4_4:+51435028 | Msa0686800:CDS |
| GAGGAGTTTGTGGAGGTTAA+AGG | 0.205640 | 4_4:-51434305 | None:intergenic |
| GACGGGTTGAGATGGGTTTC+CGG | 0.242362 | 4_4:-51434389 | None:intergenic |
| TTCAGCGAGCATGAGGTAAT+TGG | 0.242797 | 4_4:-51434356 | None:intergenic |
| AAATTACCCATGGCTGGTTT+TGG | 0.254020 | 4_4:-51436357 | None:intergenic |
| TAATGGTTTGGGACCTTAAC+AGG | 0.280289 | 4_4:+51436062 | Msa0686800:CDS |
| TTGCATAATGAGAATTTGTT+TGG | 0.282089 | 4_4:+51434994 | Msa0686800:CDS |
| ACGGGTTGAGATGGGTTTCC+GGG | 0.287427 | 4_4:-51434388 | None:intergenic |
| ATGAACAAAATCTCAGAAAT+TGG | 0.291231 | 4_4:+51436745 | Msa0686800:three_prime_UTR |
| CACGTTTGATACATCTGTTC+TGG | 0.300052 | 4_4:-51436654 | None:intergenic |
| TGACTGCAAGTTGGTAATTT+GGG | 0.320876 | 4_4:+51435029 | Msa0686800:CDS |
| GAAGAGTTGGAGTGGGGTTG+AGG | 0.330665 | 4_4:-51434283 | None:intergenic |
| CATGGGGTTTGAGTGAATGC+TGG | 0.337025 | 4_4:-51435071 | None:intergenic |
| GCCAAAATCCATTCACTATA+CGG | 0.342837 | 4_4:-51435696 | None:intergenic |
| GGCCTTCCCTTACTGTTCAA+TGG | 0.344219 | 4_4:+51434248 | Msa0686800:CDS |
| TGTTGATGGGGAGGTGAATA+GGG | 0.344389 | 4_4:+51434558 | Msa0686800:CDS |
| ACATCGGTCTCTTTGATTTA+CGG | 0.356527 | 4_4:+51435739 | Msa0686800:CDS |
| TTGTTGATGGGGAGGTGAAT+AGG | 0.360369 | 4_4:+51434557 | Msa0686800:CDS |
| TCCGTATAGTGAATGGATTT+TGG | 0.364343 | 4_4:+51435695 | Msa0686800:CDS |
| CTGATAGAAGGCTAATGGTT+TGG | 0.371708 | 4_4:+51436050 | Msa0686800:CDS |
| CACATATAACAACATAAAAC+TGG | 0.380090 | 4_4:-51436565 | None:intergenic |
| CAAGAAGCATTGGCGCGAAT+AGG | 0.380633 | 4_4:+51434087 | None:intergenic |
| ACACCATTACCTCTCTTTCA+TGG | 0.392547 | 4_4:-51435089 | None:intergenic |
| GGGTGGCGAGGAGGAGTTTG+TGG | 0.394964 | 4_4:-51434315 | None:intergenic |
| CACCATTACCTCTCTTTCAT+GGG | 0.396455 | 4_4:-51435088 | None:intergenic |
| CTTTCAGTCCGTATAGTGAA+TGG | 0.398232 | 4_4:+51435688 | Msa0686800:CDS |
| AGGATAATTCTTTCCATGTC+TGG | 0.402026 | 4_4:+51436392 | Msa0686800:CDS |
| CCATGAGAGAAGAGTAGTTC+GGG | 0.404136 | 4_4:-51436298 | None:intergenic |
| AAGAAGCATTGGCGCGAATA+GGG | 0.415403 | 4_4:+51434088 | None:intergenic |
| TGATAGAAGGCTAATGGTTT+GGG | 0.415888 | 4_4:+51436051 | Msa0686800:CDS |
| TATCAAACGTGAAAAGGTAT+TGG | 0.417760 | 4_4:+51436666 | Msa0686800:three_prime_UTR |
| ACTCAGAGGATTCTTGTTGA+TGG | 0.422181 | 4_4:+51434544 | Msa0686800:CDS |
| TAGTGCTGATAGAAGGCTAA+TGG | 0.425058 | 4_4:+51436045 | Msa0686800:CDS |
| TGCATAATGAGAATTTGTTT+GGG | 0.426082 | 4_4:+51434995 | Msa0686800:CDS |
| CTCAGAGGATTCTTGTTGAT+GGG | 0.427906 | 4_4:+51434545 | Msa0686800:CDS |
| GTGTAGAGATGAGGTATTCC+AGG | 0.429704 | 4_4:+51435982 | Msa0686800:intron |
| AGCCTTCTTCTAGTTAGTGC+TGG | 0.431392 | 4_4:-51436474 | None:intergenic |
| TTCTTTCCATGTCTGGCAAA+TGG | 0.431405 | 4_4:+51436399 | Msa0686800:CDS |
| ATTTGCTTGTGGGATGTGTT+TGG | 0.433764 | 4_4:+51434781 | Msa0686800:CDS |
| AATGAGAATTTGTTTGGGTC+TGG | 0.440769 | 4_4:+51435000 | Msa0686800:CDS |
| TTCAGGATCTGCAGCGATGA+CGG | 0.441099 | 4_4:-51434407 | None:intergenic |
| CATCTTCTAGTGCTGATAGA+AGG | 0.442876 | 4_4:+51436038 | Msa0686800:CDS |
| CACTTGAAATTACCCATGGC+TGG | 0.444884 | 4_4:-51436363 | None:intergenic |
| TCAGCGAGCATGAGGTAATT+GGG | 0.453601 | 4_4:-51434355 | None:intergenic |
| AAGAAGGGTATGGGCTGTCT+TGG | 0.455286 | 4_4:+51434710 | Msa0686800:CDS |
| TGACCCTTCAACCTAAAATC+AGG | 0.455708 | 4_4:-51434682 | None:intergenic |
| TTGAAGAAGAATTCTCCGTT+TGG | 0.456868 | 4_4:+51434173 | Msa0686800:CDS |
| TGATGCTGTTCATGTTTATG+AGG | 0.456896 | 4_4:+51434825 | Msa0686800:CDS |
| CTGTCTAAATCATGGTGCTT+GGG | 0.461163 | 4_4:-51436838 | None:intergenic |
| AGTTGGTAATTTGGGATTTG+CGG | 0.462658 | 4_4:+51435037 | Msa0686800:CDS |
| GTGGAGGTTAAAGGAAGAGT+TGG | 0.463186 | 4_4:-51434296 | None:intergenic |
| ATGGCGATGATGACAACAAT+TGG | 0.467987 | 4_4:+51436440 | Msa0686800:CDS |
| ATGGGGAGGTGAATAGGGCT+CGG | 0.471067 | 4_4:+51434563 | Msa0686800:CDS |
| GAGTGGGGTTGAGGAGGTGA+AGG | 0.476171 | 4_4:-51434274 | None:intergenic |
| CAGATGTATCAAACGTGAAA+AGG | 0.476564 | 4_4:+51436660 | Msa0686800:three_prime_UTR |
| CTGATAGAGGGAGATGAAGA+AGG | 0.477552 | 4_4:+51436268 | Msa0686800:CDS |
| TCCATGAGAGAAGAGTAGTT+CGG | 0.477596 | 4_4:-51436299 | None:intergenic |
| GGTTAGGATCCCACTCTACC+TGG | 0.480679 | 4_4:-51436000 | None:intergenic |
| TTTACTAAGGAGAGAGGGGA+GGG | 0.481005 | 4_4:+51434652 | Msa0686800:CDS |
| GTCAACACTCCCTCGTGGTT+AGG | 0.483885 | 4_4:-51436016 | None:intergenic |
| ATGAAGAGATCGTAGAGAAG+AGG | 0.487047 | 4_4:-51434208 | None:intergenic |
| TGAAGGGTCATGAGAAAGAA+GGG | 0.487057 | 4_4:+51434695 | Msa0686800:CDS |
| GATTGGGGATGAGCTGATAG+AGG | 0.487572 | 4_4:+51436255 | Msa0686800:CDS |
| TCAGGATCTGCAGCGATGAC+GGG | 0.487640 | 4_4:-51434406 | None:intergenic |
| CAGCGATGACGGGTTGAGAT+GGG | 0.493487 | 4_4:-51434396 | None:intergenic |
| GAGTTGGAGTGGGGTTGAGG+AGG | 0.500046 | 4_4:-51434280 | None:intergenic |
| TGGGTTCTTCATCGGAAGTG+TGG | 0.501819 | 4_4:-51434336 | None:intergenic |
| ATGGGGTTTGAGTGAATGCT+GGG | 0.505125 | 4_4:-51435070 | None:intergenic |
| CCCGAACTACTCTTCTCTCA+TGG | 0.505384 | 4_4:+51436298 | Msa0686800:CDS |
| TTGAAGGGTCATGAGAAAGA+AGG | 0.507504 | 4_4:+51434694 | Msa0686800:CDS |
| GCAGCGATGACGGGTTGAGA+TGG | 0.508458 | 4_4:-51434397 | None:intergenic |
| TGATCATAAGATTTGCTTGT+GGG | 0.509495 | 4_4:+51434771 | Msa0686800:CDS |
| CCTGTCTAAATCATGGTGCT+TGG | 0.510500 | 4_4:-51436839 | None:intergenic |
| GAGGTAATTGGGTTCTTCAT+CGG | 0.512602 | 4_4:-51434344 | None:intergenic |
| GGTCATGAGAAAGAAGGGTA+TGG | 0.513903 | 4_4:+51434700 | Msa0686800:CDS |
| TCTAGAACAATGCAGGTTGA+AGG | 0.521112 | 4_4:-51436807 | None:intergenic |
| AAGGAAGCCATTGAACAGTA+AGG | 0.522364 | 4_4:-51434255 | None:intergenic |
| CATGGAACCAAAACCAGCCA+TGG | 0.522424 | 4_4:+51436350 | Msa0686800:CDS |
| TGAAAACCCTATTCTTCCAA+AGG | 0.526040 | 4_4:+51434426 | Msa0686800:CDS |
| CTCGCTGAATCCACTCTCCC+CGG | 0.528576 | 4_4:+51434370 | Msa0686800:CDS |
| ATGAGGTATTCCAGGTAGAG+TGG | 0.529343 | 4_4:+51435990 | Msa0686800:CDS |
| TTTCAGCCATTTGCCAGACA+TGG | 0.531242 | 4_4:-51436405 | None:intergenic |
| AGATGGGTTTCCGGGGAGAG+TGG | 0.533865 | 4_4:-51434380 | None:intergenic |
| GAGAATTTGTTTGGGTCTGG+TGG | 0.535452 | 4_4:+51435003 | Msa0686800:CDS |
| AGGAGTGTTTCTCTTCCAAA+CGG | 0.545132 | 4_4:-51434188 | None:intergenic |
| GGGTATGGGCTGTCTTGGAG+TGG | 0.547685 | 4_4:+51434715 | Msa0686800:CDS |
| TCATCTCACACCCTCTCGCA+TGG | 0.548562 | 4_4:+51434227 | Msa0686800:CDS |
| TTCTCTCATGGAGGTCACAA+AGG | 0.553409 | 4_4:+51436310 | Msa0686800:CDS |
| GTTAAAGGAAGAGTTGGAGT+GGG | 0.555334 | 4_4:-51434290 | None:intergenic |
| GGGTTCTTCATCGGAAGTGT+GGG | 0.556214 | 4_4:-51434335 | None:intergenic |
| TCAGAGGATTCTTGTTGATG+GGG | 0.558512 | 4_4:+51434546 | Msa0686800:CDS |
| AACAAAATCTCAGAAATTGG+TGG | 0.561940 | 4_4:+51436748 | Msa0686800:three_prime_UTR |
| GCTGAAAGCATCTACAATGA+TGG | 0.565727 | 4_4:+51436421 | Msa0686800:CDS |
| TGCGAAGACTTGTAATTCAG+AGG | 0.566003 | 4_4:+51434615 | Msa0686800:CDS |
| CTTTGATTTACGGAAGCTTG+AGG | 0.566055 | 4_4:+51435749 | Msa0686800:CDS |
| CGATGATGACAACAATTGGA+TGG | 0.567266 | 4_4:+51436444 | Msa0686800:CDS |
| GACCAGCACTAACTAGAAGA+AGG | 0.567897 | 4_4:+51436472 | Msa0686800:exon |
| TTAAAGGAAGAGTTGGAGTG+GGG | 0.573089 | 4_4:-51434289 | None:intergenic |
| CAAGGAATCTAGAACAATGC+AGG | 0.574983 | 4_4:-51436814 | None:intergenic |
| GTCATGAGAAAGAAGGGTAT+GGG | 0.577823 | 4_4:+51434701 | Msa0686800:CDS |
| GAGGATTCTTGTTGATGGGG+AGG | 0.577872 | 4_4:+51434549 | Msa0686800:CDS |
| TGGGGAGGTGAATAGGGCTC+GGG | 0.577992 | 4_4:+51434564 | Msa0686800:CDS |
| CTAACTAGAAGAAGGCTCAA+AGG | 0.585001 | 4_4:+51436480 | Msa0686800:exon |
| TTCTTCATCGGAAGTGTGGG+TGG | 0.585703 | 4_4:-51434332 | None:intergenic |
| CATCGGAAGTGTGGGTGGCG+AGG | 0.587425 | 4_4:-51434327 | None:intergenic |
| CGGAAGTGTGGGTGGCGAGG+AGG | 0.592106 | 4_4:-51434324 | None:intergenic |
| AAATCATGGTGCTTGGGACA+AGG | 0.592412 | 4_4:-51436832 | None:intergenic |
| ACCATTACCTCTCTTTCATG+GGG | 0.593239 | 4_4:-51435087 | None:intergenic |
| GGTAATTTCAAGTGTAGCTG+AGG | 0.595021 | 4_4:+51436372 | Msa0686800:CDS |
| GCAACAACATTCGCATTCTG+TGG | 0.595065 | 4_4:-51434592 | None:intergenic |
| TTCATGATGACTCAGGATTG+GGG | 0.595806 | 4_4:+51436240 | Msa0686800:intron |
| TAAGGGAAGGCCATGCGAGA+GGG | 0.598709 | 4_4:-51434237 | None:intergenic |
| GGTTAAAGGAAGAGTTGGAG+TGG | 0.603090 | 4_4:-51434291 | None:intergenic |
| TGAGGTATTCCAGGTAGAGT+GGG | 0.604028 | 4_4:+51435991 | Msa0686800:CDS |
| CGGGTTGAGATGGGTTTCCG+GGG | 0.604951 | 4_4:-51434387 | None:intergenic |
| TATTGTGCTTGTTGAAACAA+TGG | 0.606831 | 4_4:+51436592 | Msa0686800:three_prime_UTR |
| GCTTGTTGAAACAATGGTGG+TGG | 0.613191 | 4_4:+51436598 | Msa0686800:three_prime_UTR |
| TGGCGAGGAGGAGTTTGTGG+AGG | 0.615770 | 4_4:-51434312 | None:intergenic |
| TAAATCAAAGAGACCGATGT+CGG | 0.616345 | 4_4:-51435736 | None:intergenic |
| GAGTGGATTCAGCGAGCATG+AGG | 0.617545 | 4_4:-51434363 | None:intergenic |
| TGAGAGAAGAGTAGTTCGGG+AGG | 0.620188 | 4_4:-51436295 | None:intergenic |
| ACTCAAACCCCATGAAAGAG+AGG | 0.622281 | 4_4:+51435080 | Msa0686800:CDS |
| ATTGGGGATGAGCTGATAGA+GGG | 0.628114 | 4_4:+51436256 | Msa0686800:CDS |
| GTGTGGTTGAAGATGTGTCT+TGG | 0.629529 | 4_4:+51434968 | Msa0686800:CDS |
| AGCCATTGAACAGTAAGGGA+AGG | 0.631871 | 4_4:-51434250 | None:intergenic |
| ATGGAACCAAAACCAGCCAT+GGG | 0.633074 | 4_4:+51436351 | Msa0686800:CDS |
| ATAAGTTTCAACAAGCTCAG+TGG | 0.635236 | 4_4:-51436713 | None:intergenic |
| CAAACAAAACAACAAAGCAA+TGG | 0.635418 | 4_4:-51436517 | None:intergenic |
| GTAAGGGAAGGCCATGCGAG+AGG | 0.641787 | 4_4:-51434238 | None:intergenic |
| AGGAAGCCATTGAACAGTAA+GGG | 0.642100 | 4_4:-51434254 | None:intergenic |
| ATGATCATAAGATTTGCTTG+TGG | 0.642906 | 4_4:+51434770 | Msa0686800:CDS |
| CGAAACCGAAAACGAAGCAG+AGG | 0.656030 | 4_4:+51434150 | Msa0686800:CDS |
| GCTACACTTGAAATTACCCA+TGG | 0.657118 | 4_4:-51436367 | None:intergenic |
| GCATCTTCAGACACCGACAT+CGG | 0.660753 | 4_4:+51435723 | Msa0686800:CDS |
| GTGTTAGGGACATGAAAGTG+TGG | 0.665723 | 4_4:+51434951 | Msa0686800:intron |
| GATGATGACAACAATTGGAT+GGG | 0.672812 | 4_4:+51436445 | Msa0686800:CDS |
| TGGTGGAGATGACTGCAAGT+TGG | 0.682617 | 4_4:+51435020 | Msa0686800:CDS |
| ATAGAGGGAGATGAAGAAGG+TGG | 0.694464 | 4_4:+51436271 | Msa0686800:CDS |
| TGGCTACTTAGAAAATGCAG+TGG | 0.707079 | 4_4:-51435774 | None:intergenic |
| GAACTACTCTTCTCTCATGG+AGG | 0.707424 | 4_4:+51436301 | Msa0686800:CDS |
| TATAGGTGGAGATTACTCAG+AGG | 0.710079 | 4_4:+51434530 | Msa0686800:intron |
| AAGATGTCAACACTCCCTCG+TGG | 0.712873 | 4_4:-51436021 | None:intergenic |
| TGTGCTTGTTGAAACAATGG+TGG | 0.729223 | 4_4:+51436595 | Msa0686800:three_prime_UTR |
| GAGTGGGATCCTAACCACGA+GGG | 0.751517 | 4_4:+51436007 | Msa0686800:CDS |
| GCAGGTTGAAGGATTCACAG+TGG | 0.757635 | 4_4:-51436796 | None:intergenic |
| AGAGTGGGATCCTAACCACG+AGG | 0.769525 | 4_4:+51436006 | Msa0686800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATCATTTTTCTTATACA+CGG | + | chr4_4:51435291-51435310 | Msa0686800:intron | 15.0% |
| !! | ATTCTTGAGAAAAACAAAAA+TGG | + | chr4_4:51434117-51434136 | Msa0686800:exon | 20.0% |
| !! | GAAAAAAAATCAAAAACCTT+TGG | - | chr4_4:51434445-51434464 | None:intergenic | 20.0% |
| !!! | TGTTTGTTGTTTGTTTTTAT+AGG | + | chr4_4:51434513-51434532 | Msa0686800:intron | 20.0% |
| !!! | TTATGTGTTTGATTTTACTA+AGG | + | chr4_4:51434639-51434658 | Msa0686800:CDS | 20.0% |
| !!! | ATGAGAATTGATTTGATAAT+TGG | + | chr4_4:51434853-51434872 | Msa0686800:intron | 20.0% |
| !! | AAGAAAAATGATAATCATCA+TGG | - | chr4_4:51435286-51435305 | None:intergenic | 20.0% |
| !! | GAAGTTAAATTCCAATTAAT+GGG | + | chr4_4:51435422-51435441 | Msa0686800:intron | 20.0% |
| !! | AAGTTAAATTCCAATTAATG+GGG | + | chr4_4:51435423-51435442 | Msa0686800:intron | 20.0% |
| !!! | GAAAAATATCAGATTTTTCA+TGG | + | chr4_4:51436332-51436351 | Msa0686800:CDS | 20.0% |
| !!! | TTGTTGTTTGTTTTTATAGG+TGG | + | chr4_4:51434516-51434535 | Msa0686800:intron | 25.0% |
| !! | TGATAATTGGTGTGTTTTAT+TGG | + | chr4_4:51434866-51434885 | Msa0686800:intron | 25.0% |
| !! | TTGCATAATGAGAATTTGTT+TGG | + | chr4_4:51434994-51435013 | Msa0686800:CDS | 25.0% |
| !! | TGCATAATGAGAATTTGTTT+GGG | + | chr4_4:51434995-51435014 | Msa0686800:CDS | 25.0% |
| !!! | CTTCATAATATTTGTTGTGT+AGG | + | chr4_4:51435114-51435133 | Msa0686800:intron | 25.0% |
| ! | TCTCATAATGTCATAAATGA+AGG | - | chr4_4:51435204-51435223 | None:intergenic | 25.0% |
| ! | GGAAGTTAAATTCCAATTAA+TGG | + | chr4_4:51435421-51435440 | Msa0686800:intron | 25.0% |
| ! | AGTTAAATTCCAATTAATGG+GGG | + | chr4_4:51435424-51435443 | Msa0686800:intron | 25.0% |
| ! | ACTGAAAACATAATCAAACA+AGG | - | chr4_4:51435487-51435506 | None:intergenic | 25.0% |
| ! | TATTACTATCTTGTAGTTGA+TGG | + | chr4_4:51435846-51435865 | Msa0686800:intron | 25.0% |
| !!! | AACTGATAAGTTTTTAGCTT+TGG | + | chr4_4:51435915-51435934 | Msa0686800:intron | 25.0% |
| ! | CATAAACAGAGAATTGAAAT+AGG | + | chr4_4:51436190-51436209 | Msa0686800:intron | 25.0% |
| ! | CACATATAACAACATAAAAC+TGG | - | chr4_4:51436568-51436587 | None:intergenic | 25.0% |
| ! | ATGAACAAAATCTCAGAAAT+TGG | + | chr4_4:51436745-51436764 | Msa0686800:three_prime_UTR | 25.0% |
| CTTGAGAAAAACAAAAATGG+CGG | + | chr4_4:51434120-51434139 | Msa0686800:exon | 30.0% | |
| ! | CAAAAACCTTTGGAAGAATA+GGG | - | chr4_4:51434435-51434454 | None:intergenic | 30.0% |
| ! | TCAAAAACCTTTGGAAGAAT+AGG | - | chr4_4:51434436-51434455 | None:intergenic | 30.0% |
| ACAAACAACAAACATCATTC+AGG | - | chr4_4:51434507-51434526 | None:intergenic | 30.0% | |
| !! | TTTGATTTTACTAAGGAGAG+AGG | + | chr4_4:51434646-51434665 | Msa0686800:CDS | 30.0% |
| ! | TTGATTTTACTAAGGAGAGA+GGG | + | chr4_4:51434647-51434666 | Msa0686800:CDS | 30.0% |
| !!! | TAATCCTGATTTTAGGTTGA+AGG | + | chr4_4:51434678-51434697 | Msa0686800:CDS | 30.0% |
| !!! | AATCCTGATTTTAGGTTGAA+GGG | + | chr4_4:51434679-51434698 | Msa0686800:CDS | 30.0% |
| ! | ATGATCATAAGATTTGCTTG+TGG | + | chr4_4:51434770-51434789 | Msa0686800:CDS | 30.0% |
| ! | TGATCATAAGATTTGCTTGT+GGG | + | chr4_4:51434771-51434790 | Msa0686800:CDS | 30.0% |
| !! | TAATATTTGTTGTGTAGGCT+AGG | + | chr4_4:51435119-51435138 | Msa0686800:intron | 30.0% |
| TCTTCATCAAGCATATGATA+TGG | + | chr4_4:51435146-51435165 | Msa0686800:intron | 30.0% | |
| ! | AATTGGAATTTAACTTCCGA+TGG | - | chr4_4:51435419-51435438 | None:intergenic | 30.0% |
| GTTAAATTCCAATTAATGGG+GGG | + | chr4_4:51435425-51435444 | Msa0686800:intron | 30.0% | |
| AAACAAGGTAACTTCTCTAT+TGG | - | chr4_4:51435472-51435491 | None:intergenic | 30.0% | |
| CAAAAATACAAACAGACATC+AGG | - | chr4_4:51435602-51435621 | None:intergenic | 30.0% | |
| !! | ATGTCTGTTTGTATTTTTGC+TGG | + | chr4_4:51435603-51435622 | Msa0686800:intron | 30.0% |
| TATGAATCTGTGATAGATGA+AGG | - | chr4_4:51435809-51435828 | None:intergenic | 30.0% | |
| ACATACAAAATCGAATCTAC+AGG | - | chr4_4:51435892-51435911 | None:intergenic | 30.0% | |
| AAACCAAATACGTGAGTAAA+AGG | - | chr4_4:51435952-51435971 | None:intergenic | 30.0% | |
| !! | TTTTTCAATGTGTAGAGATG+AGG | + | chr4_4:51435973-51435992 | Msa0686800:intron | 30.0% |
| AAAGAAACAAAGAATTCCGT+AGG | - | chr4_4:51436102-51436121 | None:intergenic | 30.0% | |
| GTCATCATGAAAATAAAGCA+TGG | - | chr4_4:51436231-51436250 | None:intergenic | 30.0% | |
| !!! | CTTTATTTTCATGATGACTC+AGG | + | chr4_4:51436233-51436252 | Msa0686800:intron | 30.0% |
| CAAACAAAACAACAAAGCAA+TGG | - | chr4_4:51436520-51436539 | None:intergenic | 30.0% | |
| ! | TATTGTGCTTGTTGAAACAA+TGG | + | chr4_4:51436592-51436611 | Msa0686800:three_prime_UTR | 30.0% |
| ! | TATCAAACGTGAAAAGGTAT+TGG | + | chr4_4:51436666-51436685 | Msa0686800:three_prime_UTR | 30.0% |
| AACAAAATCTCAGAAATTGG+TGG | + | chr4_4:51436748-51436767 | Msa0686800:three_prime_UTR | 30.0% | |
| TTGAAGAAGAATTCTCCGTT+TGG | + | chr4_4:51434173-51434192 | Msa0686800:CDS | 35.0% | |
| ! | TTTGGAAGAATAGGGTTTTC+AGG | - | chr4_4:51434427-51434446 | None:intergenic | 35.0% |
| TGAAAACCCTATTCTTCCAA+AGG | + | chr4_4:51434426-51434445 | Msa0686800:CDS | 35.0% | |
| ! | TGATTTTACTAAGGAGAGAG+GGG | + | chr4_4:51434648-51434667 | Msa0686800:CDS | 35.0% |
| ! | AGGGTTGTAATCCTGATTTT+AGG | + | chr4_4:51434671-51434690 | Msa0686800:CDS | 35.0% |
| !!! | TCTTGGAGTGGTTTTAAGAA+TGG | + | chr4_4:51434727-51434746 | Msa0686800:CDS | 35.0% |
| !!! | CTTGGAGTGGTTTTAAGAAT+GGG | + | chr4_4:51434728-51434747 | Msa0686800:CDS | 35.0% |
| ! | AAGAATGGGTATCTTTTGAG+TGG | + | chr4_4:51434742-51434761 | Msa0686800:CDS | 35.0% |
| TGATGCTGTTCATGTTTATG+AGG | + | chr4_4:51434825-51434844 | Msa0686800:CDS | 35.0% | |
| !!! | GTTTTATTGGTCTTGTTGTG+AGG | + | chr4_4:51434879-51434898 | Msa0686800:intron | 35.0% |
| TGAAATTGTCGTTGAACTTG+TGG | + | chr4_4:51434921-51434940 | Msa0686800:intron | 35.0% | |
| ! | ACTTGTGGTTTTTGTGTGTT+AGG | + | chr4_4:51434936-51434955 | Msa0686800:intron | 35.0% |
| ! | CTTGTGGTTTTTGTGTGTTA+GGG | + | chr4_4:51434937-51434956 | Msa0686800:intron | 35.0% |
| ! | AATGAGAATTTGTTTGGGTC+TGG | + | chr4_4:51435000-51435019 | Msa0686800:CDS | 35.0% |
| !! | ATGACTGCAAGTTGGTAATT+TGG | + | chr4_4:51435028-51435047 | Msa0686800:CDS | 35.0% |
| !! | TGACTGCAAGTTGGTAATTT+GGG | + | chr4_4:51435029-51435048 | Msa0686800:CDS | 35.0% |
| !! | AGTTGGTAATTTGGGATTTG+CGG | + | chr4_4:51435037-51435056 | Msa0686800:CDS | 35.0% |
| ATTATGAGAACCAACCCAAT+TGG | + | chr4_4:51435215-51435234 | Msa0686800:intron | 35.0% | |
| TTATGAGAACCAACCCAATT+GGG | + | chr4_4:51435216-51435235 | Msa0686800:intron | 35.0% | |
| GTCAAAACCTGCAATGAATT+TGG | + | chr4_4:51435259-51435278 | Msa0686800:intron | 35.0% | |
| !! | TCCGTATAGTGAATGGATTT+TGG | + | chr4_4:51435695-51435714 | Msa0686800:CDS | 35.0% |
| GCCAAAATCCATTCACTATA+CGG | - | chr4_4:51435699-51435718 | None:intergenic | 35.0% | |
| TAAATCAAAGAGACCGATGT+CGG | - | chr4_4:51435739-51435758 | None:intergenic | 35.0% | |
| ! | ACATCGGTCTCTTTGATTTA+CGG | + | chr4_4:51435739-51435758 | Msa0686800:CDS | 35.0% |
| TGATAGAAGGCTAATGGTTT+GGG | + | chr4_4:51436051-51436070 | Msa0686800:CDS | 35.0% | |
| ! | GTGTCTTCTTTTACCTGTTA+AGG | - | chr4_4:51436078-51436097 | None:intergenic | 35.0% |
| ! | TTTTCATGATGACTCAGGAT+TGG | + | chr4_4:51436238-51436257 | Msa0686800:intron | 35.0% |
| TTTCATGATGACTCAGGATT+GGG | + | chr4_4:51436239-51436258 | Msa0686800:intron | 35.0% | |
| AGGATAATTCTTTCCATGTC+TGG | + | chr4_4:51436392-51436411 | Msa0686800:CDS | 35.0% | |
| GATGATGACAACAATTGGAT+GGG | + | chr4_4:51436445-51436464 | Msa0686800:CDS | 35.0% | |
| CAGATGTATCAAACGTGAAA+AGG | + | chr4_4:51436660-51436679 | Msa0686800:three_prime_UTR | 35.0% | |
| ATAAGTTTCAACAAGCTCAG+TGG | - | chr4_4:51436716-51436735 | None:intergenic | 35.0% | |
| ! | TTCAACCTCTGCTTCGTTTT+CGG | - | chr4_4:51434158-51434177 | None:intergenic | 40.0% |
| !! | AGGAGTGTTTCTCTTCCAAA+CGG | - | chr4_4:51434191-51434210 | None:intergenic | 40.0% |
| ATGAAGAGATCGTAGAGAAG+AGG | - | chr4_4:51434211-51434230 | None:intergenic | 40.0% | |
| AGGAAGCCATTGAACAGTAA+GGG | - | chr4_4:51434257-51434276 | None:intergenic | 40.0% | |
| AAGGAAGCCATTGAACAGTA+AGG | - | chr4_4:51434258-51434277 | None:intergenic | 40.0% | |
| TTAAAGGAAGAGTTGGAGTG+GGG | - | chr4_4:51434292-51434311 | None:intergenic | 40.0% | |
| GTTAAAGGAAGAGTTGGAGT+GGG | - | chr4_4:51434293-51434312 | None:intergenic | 40.0% | |
| GAGGTAATTGGGTTCTTCAT+CGG | - | chr4_4:51434347-51434366 | None:intergenic | 40.0% | |
| CAGGCATTTCATCAAACAGT+TGG | - | chr4_4:51434488-51434507 | None:intergenic | 40.0% | |
| TATAGGTGGAGATTACTCAG+AGG | + | chr4_4:51434530-51434549 | Msa0686800:intron | 40.0% | |
| ACTCAGAGGATTCTTGTTGA+TGG | + | chr4_4:51434544-51434563 | Msa0686800:CDS | 40.0% | |
| CTCAGAGGATTCTTGTTGAT+GGG | + | chr4_4:51434545-51434564 | Msa0686800:CDS | 40.0% | |
| TCAGAGGATTCTTGTTGATG+GGG | + | chr4_4:51434546-51434565 | Msa0686800:CDS | 40.0% | |
| TGCGAAGACTTGTAATTCAG+AGG | + | chr4_4:51434615-51434634 | Msa0686800:CDS | 40.0% | |
| TGACCCTTCAACCTAAAATC+AGG | - | chr4_4:51434685-51434704 | None:intergenic | 40.0% | |
| TTGAAGGGTCATGAGAAAGA+AGG | + | chr4_4:51434694-51434713 | Msa0686800:CDS | 40.0% | |
| TGAAGGGTCATGAGAAAGAA+GGG | + | chr4_4:51434695-51434714 | Msa0686800:CDS | 40.0% | |
| ! | GTCATGAGAAAGAAGGGTAT+GGG | + | chr4_4:51434701-51434720 | Msa0686800:CDS | 40.0% |
| ATTTGCTTGTGGGATGTGTT+TGG | + | chr4_4:51434781-51434800 | Msa0686800:CDS | 40.0% | |
| ACCATTACCTCTCTTTCATG+GGG | - | chr4_4:51435090-51435109 | None:intergenic | 40.0% | |
| CACCATTACCTCTCTTTCAT+GGG | - | chr4_4:51435091-51435110 | None:intergenic | 40.0% | |
| ACACCATTACCTCTCTTTCA+TGG | - | chr4_4:51435092-51435111 | None:intergenic | 40.0% | |
| TATGAGAACCAACCCAATTG+GGG | + | chr4_4:51435217-51435236 | Msa0686800:intron | 40.0% | |
| TAGCATACAAAGCCCCAATT+GGG | - | chr4_4:51435232-51435251 | None:intergenic | 40.0% | |
| ATAGCATACAAAGCCCCAAT+TGG | - | chr4_4:51435233-51435252 | None:intergenic | 40.0% | |
| ! | AATTGGGGCTTTGTATGCTA+TGG | + | chr4_4:51435232-51435251 | Msa0686800:intron | 40.0% |
| TCATGGTCCAAATTCATTGC+AGG | - | chr4_4:51435269-51435288 | None:intergenic | 40.0% | |
| TATCTCAGATTGAGCAACCT+CGG | - | chr4_4:51435345-51435364 | None:intergenic | 40.0% | |
| CCTGGACAGTATGTTCTAAT+AGG | - | chr4_4:51435387-51435406 | None:intergenic | 40.0% | |
| CCTATTAGAACATACTGTCC+AGG | + | chr4_4:51435384-51435403 | Msa0686800:intron | 40.0% | |
| !! | GTTGTATGCTCGTTTTGAAC+AGG | + | chr4_4:51435653-51435672 | Msa0686800:intron | 40.0% |
| CTTTCAGTCCGTATAGTGAA+TGG | + | chr4_4:51435688-51435707 | Msa0686800:CDS | 40.0% | |
| ! | CTTTGATTTACGGAAGCTTG+AGG | + | chr4_4:51435749-51435768 | Msa0686800:CDS | 40.0% |
| TGGCTACTTAGAAAATGCAG+TGG | - | chr4_4:51435777-51435796 | None:intergenic | 40.0% | |
| ! | AATACGTGAGTAAAAGGCAC+TGG | - | chr4_4:51435946-51435965 | None:intergenic | 40.0% |
| ! | GTGCCTTTTACTCACGTATT+TGG | + | chr4_4:51435946-51435965 | Msa0686800:intron | 40.0% |
| !! | CATCTTCTAGTGCTGATAGA+AGG | + | chr4_4:51436038-51436057 | Msa0686800:CDS | 40.0% |
| !! | TAGTGCTGATAGAAGGCTAA+TGG | + | chr4_4:51436045-51436064 | Msa0686800:CDS | 40.0% |
| CTGATAGAAGGCTAATGGTT+TGG | + | chr4_4:51436050-51436069 | Msa0686800:CDS | 40.0% | |
| ! | TAATGGTTTGGGACCTTAAC+AGG | + | chr4_4:51436062-51436081 | Msa0686800:CDS | 40.0% |
| GGTAAAAGAAGACACTCCTA+CGG | + | chr4_4:51436083-51436102 | Msa0686800:intron | 40.0% | |
| TTCATGATGACTCAGGATTG+GGG | + | chr4_4:51436240-51436259 | Msa0686800:intron | 40.0% | |
| TCCATGAGAGAAGAGTAGTT+CGG | - | chr4_4:51436302-51436321 | None:intergenic | 40.0% | |
| !!! | AAATTACCCATGGCTGGTTT+TGG | - | chr4_4:51436360-51436379 | None:intergenic | 40.0% |
| GCTACACTTGAAATTACCCA+TGG | - | chr4_4:51436370-51436389 | None:intergenic | 40.0% | |
| ! | GGTAATTTCAAGTGTAGCTG+AGG | + | chr4_4:51436372-51436391 | Msa0686800:CDS | 40.0% |
| TTCTTTCCATGTCTGGCAAA+TGG | + | chr4_4:51436399-51436418 | Msa0686800:CDS | 40.0% | |
| !! | GCTGAAAGCATCTACAATGA+TGG | + | chr4_4:51436421-51436440 | Msa0686800:CDS | 40.0% |
| ATGGCGATGATGACAACAAT+TGG | + | chr4_4:51436440-51436459 | Msa0686800:CDS | 40.0% | |
| CGATGATGACAACAATTGGA+TGG | + | chr4_4:51436444-51436463 | Msa0686800:CDS | 40.0% | |
| CTAACTAGAAGAAGGCTCAA+AGG | + | chr4_4:51436480-51436499 | Msa0686800:exon | 40.0% | |
| ! | TGTGCTTGTTGAAACAATGG+TGG | + | chr4_4:51436595-51436614 | Msa0686800:three_prime_UTR | 40.0% |
| CACGTTTGATACATCTGTTC+TGG | - | chr4_4:51436657-51436676 | None:intergenic | 40.0% | |
| ! | TCTAGAACAATGCAGGTTGA+AGG | - | chr4_4:51436810-51436829 | None:intergenic | 40.0% |
| ! | CAAGGAATCTAGAACAATGC+AGG | - | chr4_4:51436817-51436836 | None:intergenic | 40.0% |
| AGCCATTGAACAGTAAGGGA+AGG | - | chr4_4:51434253-51434272 | None:intergenic | 45.0% | |
| GGTTAAAGGAAGAGTTGGAG+TGG | - | chr4_4:51434294-51434313 | None:intergenic | 45.0% | |
| GTGGAGGTTAAAGGAAGAGT+TGG | - | chr4_4:51434299-51434318 | None:intergenic | 45.0% | |
| GAGGAGTTTGTGGAGGTTAA+AGG | - | chr4_4:51434308-51434327 | None:intergenic | 45.0% | |
| TCAGCGAGCATGAGGTAATT+GGG | - | chr4_4:51434358-51434377 | None:intergenic | 45.0% | |
| TTCAGCGAGCATGAGGTAAT+TGG | - | chr4_4:51434359-51434378 | None:intergenic | 45.0% | |
| ! | TTGTTGATGGGGAGGTGAAT+AGG | + | chr4_4:51434557-51434576 | Msa0686800:CDS | 45.0% |
| ! | TGTTGATGGGGAGGTGAATA+GGG | + | chr4_4:51434558-51434577 | Msa0686800:CDS | 45.0% |
| GCAACAACATTCGCATTCTG+TGG | - | chr4_4:51434595-51434614 | None:intergenic | 45.0% | |
| ! | TTTTACTAAGGAGAGAGGGG+AGG | + | chr4_4:51434651-51434670 | Msa0686800:CDS | 45.0% |
| TTTACTAAGGAGAGAGGGGA+GGG | + | chr4_4:51434652-51434671 | Msa0686800:CDS | 45.0% | |
| GGTCATGAGAAAGAAGGGTA+TGG | + | chr4_4:51434700-51434719 | Msa0686800:CDS | 45.0% | |
| GTGTTAGGGACATGAAAGTG+TGG | + | chr4_4:51434951-51434970 | Msa0686800:intron | 45.0% | |
| GTGTGGTTGAAGATGTGTCT+TGG | + | chr4_4:51434968-51434987 | Msa0686800:CDS | 45.0% | |
| ! | GAGAATTTGTTTGGGTCTGG+TGG | + | chr4_4:51435003-51435022 | Msa0686800:CDS | 45.0% |
| ATGGGGTTTGAGTGAATGCT+GGG | - | chr4_4:51435073-51435092 | None:intergenic | 45.0% | |
| ACTCAAACCCCATGAAAGAG+AGG | + | chr4_4:51435080-51435099 | Msa0686800:CDS | 45.0% | |
| ACCCCATGAAAGAGAGGTAA+TGG | + | chr4_4:51435086-51435105 | Msa0686800:intron | 45.0% | |
| ATACAAAGCCCCAATTGGGT+TGG | - | chr4_4:51435228-51435247 | None:intergenic | 45.0% | |
| ATCTCAGATTGAGCAACCTC+GGG | - | chr4_4:51435344-51435363 | None:intergenic | 45.0% | |
| AGGAAAAGCCCCCCATTAAT+TGG | - | chr4_4:51435436-51435455 | None:intergenic | 45.0% | |
| ! | GGGGCTTTTCCTGCAAAAAT+GGG | + | chr4_4:51435444-51435463 | Msa0686800:intron | 45.0% |
| ! | GGGCTTTTCCTGCAAAAATG+GGG | + | chr4_4:51435445-51435464 | Msa0686800:intron | 45.0% |
| ! | GGCTTTTCCTGCAAAAATGG+GGG | + | chr4_4:51435446-51435465 | Msa0686800:intron | 45.0% |
| ATAGATGAAGGTCGTACGTG+TGG | - | chr4_4:51435797-51435816 | None:intergenic | 45.0% | |
| ! | GTGTAGAGATGAGGTATTCC+AGG | + | chr4_4:51435982-51436001 | Msa0686800:intron | 45.0% |
| ! | ATGAGGTATTCCAGGTAGAG+TGG | + | chr4_4:51435990-51436009 | Msa0686800:CDS | 45.0% |
| ! | TGAGGTATTCCAGGTAGAGT+GGG | + | chr4_4:51435991-51436010 | Msa0686800:CDS | 45.0% |
| ATTGGGGATGAGCTGATAGA+GGG | + | chr4_4:51436256-51436275 | Msa0686800:CDS | 45.0% | |
| CTGATAGAGGGAGATGAAGA+AGG | + | chr4_4:51436268-51436287 | Msa0686800:CDS | 45.0% | |
| ATAGAGGGAGATGAAGAAGG+TGG | + | chr4_4:51436271-51436290 | Msa0686800:CDS | 45.0% | |
| CCATGAGAGAAGAGTAGTTC+GGG | - | chr4_4:51436301-51436320 | None:intergenic | 45.0% | |
| GAACTACTCTTCTCTCATGG+AGG | + | chr4_4:51436301-51436320 | Msa0686800:CDS | 45.0% | |
| TTCTCTCATGGAGGTCACAA+AGG | + | chr4_4:51436310-51436329 | Msa0686800:CDS | 45.0% | |
| ATGGAACCAAAACCAGCCAT+GGG | + | chr4_4:51436351-51436370 | Msa0686800:CDS | 45.0% | |
| CACTTGAAATTACCCATGGC+TGG | - | chr4_4:51436366-51436385 | None:intergenic | 45.0% | |
| TTTCAGCCATTTGCCAGACA+TGG | - | chr4_4:51436408-51436427 | None:intergenic | 45.0% | |
| GACCAGCACTAACTAGAAGA+AGG | + | chr4_4:51436472-51436491 | Msa0686800:exon | 45.0% | |
| ! | AGCCTTCTTCTAGTTAGTGC+TGG | - | chr4_4:51436477-51436496 | None:intergenic | 45.0% |
| ! | GCTTGTTGAAACAATGGTGG+TGG | + | chr4_4:51436598-51436617 | Msa0686800:three_prime_UTR | 45.0% |
| CGAAACCGAAAACGAAGCAG+AGG | + | chr4_4:51434150-51434169 | Msa0686800:CDS | 50.0% | |
| GGCCTTCCCTTACTGTTCAA+TGG | + | chr4_4:51434248-51434267 | Msa0686800:CDS | 50.0% | |
| ! | TTCTTCATCGGAAGTGTGGG+TGG | - | chr4_4:51434335-51434354 | None:intergenic | 50.0% |
| ! | GGGTTCTTCATCGGAAGTGT+GGG | - | chr4_4:51434338-51434357 | None:intergenic | 50.0% |
| TGGGTTCTTCATCGGAAGTG+TGG | - | chr4_4:51434339-51434358 | None:intergenic | 50.0% | |
| TTCAGGATCTGCAGCGATGA+CGG | - | chr4_4:51434410-51434429 | None:intergenic | 50.0% | |
| ! | GAGGATTCTTGTTGATGGGG+AGG | + | chr4_4:51434549-51434568 | Msa0686800:CDS | 50.0% |
| ! | AAGAAGGGTATGGGCTGTCT+TGG | + | chr4_4:51434710-51434729 | Msa0686800:CDS | 50.0% |
| TGGTGGAGATGACTGCAAGT+TGG | + | chr4_4:51435020-51435039 | Msa0686800:CDS | 50.0% | |
| CATGGGGTTTGAGTGAATGC+TGG | - | chr4_4:51435074-51435093 | None:intergenic | 50.0% | |
| TCTCAGATTGAGCAACCTCG+GGG | - | chr4_4:51435343-51435362 | None:intergenic | 50.0% | |
| GTCCAGGAGAAACTCACCAT+CGG | + | chr4_4:51435400-51435419 | Msa0686800:intron | 50.0% | |
| TTCCGATGGTGAGTTTCTCC+TGG | - | chr4_4:51435405-51435424 | None:intergenic | 50.0% | |
| ! | GGGGGCTTTTCCTGCAAAAA+TGG | + | chr4_4:51435443-51435462 | Msa0686800:intron | 50.0% |
| !! | CTATTGGCCCCCATTTTTGC+AGG | - | chr4_4:51435456-51435475 | None:intergenic | 50.0% |
| GCATCTTCAGACACCGACAT+CGG | + | chr4_4:51435723-51435742 | Msa0686800:CDS | 50.0% | |
| AAGATGTCAACACTCCCTCG+TGG | - | chr4_4:51436024-51436043 | None:intergenic | 50.0% | |
| GATTGGGGATGAGCTGATAG+AGG | + | chr4_4:51436255-51436274 | Msa0686800:CDS | 50.0% | |
| TGAGAGAAGAGTAGTTCGGG+AGG | - | chr4_4:51436298-51436317 | None:intergenic | 50.0% | |
| CCCGAACTACTCTTCTCTCA+TGG | + | chr4_4:51436298-51436317 | Msa0686800:CDS | 50.0% | |
| CATGGAACCAAAACCAGCCA+TGG | + | chr4_4:51436350-51436369 | Msa0686800:CDS | 50.0% | |
| ! | GCAGGTTGAAGGATTCACAG+TGG | - | chr4_4:51436799-51436818 | None:intergenic | 50.0% |
| TCATCTCACACCCTCTCGCA+TGG | + | chr4_4:51434227-51434246 | Msa0686800:CDS | 55.0% | |
| TAAGGGAAGGCCATGCGAGA+GGG | - | chr4_4:51434240-51434259 | None:intergenic | 55.0% | |
| GAAGAGTTGGAGTGGGGTTG+AGG | - | chr4_4:51434286-51434305 | None:intergenic | 55.0% | |
| ! | GAGTGGATTCAGCGAGCATG+AGG | - | chr4_4:51434366-51434385 | None:intergenic | 55.0% |
| ! | ACGGGTTGAGATGGGTTTCC+GGG | - | chr4_4:51434391-51434410 | None:intergenic | 55.0% |
| !! | GACGGGTTGAGATGGGTTTC+CGG | - | chr4_4:51434392-51434411 | None:intergenic | 55.0% |
| !! | CAGCGATGACGGGTTGAGAT+GGG | - | chr4_4:51434399-51434418 | None:intergenic | 55.0% |
| TCAGGATCTGCAGCGATGAC+GGG | - | chr4_4:51434409-51434428 | None:intergenic | 55.0% | |
| ATGGGGAGGTGAATAGGGCT+CGG | + | chr4_4:51434563-51434582 | Msa0686800:CDS | 55.0% | |
| GATTGATGTTTAGCCCCCCG+AGG | + | chr4_4:51435325-51435344 | Msa0686800:intron | 55.0% | |
| TCAGATTGAGCAACCTCGGG+GGG | - | chr4_4:51435341-51435360 | None:intergenic | 55.0% | |
| CTCAGATTGAGCAACCTCGG+GGG | - | chr4_4:51435342-51435361 | None:intergenic | 55.0% | |
| GGTTAGGATCCCACTCTACC+TGG | - | chr4_4:51436003-51436022 | None:intergenic | 55.0% | |
| AGAGTGGGATCCTAACCACG+AGG | + | chr4_4:51436006-51436025 | Msa0686800:CDS | 55.0% | |
| GAGTGGGATCCTAACCACGA+GGG | + | chr4_4:51436007-51436026 | Msa0686800:CDS | 55.0% | |
| GTCAACACTCCCTCGTGGTT+AGG | - | chr4_4:51436019-51436038 | None:intergenic | 55.0% | |
| GTAAGGGAAGGCCATGCGAG+AGG | - | chr4_4:51434241-51434260 | None:intergenic | 60.0% | |
| GAGTGGGGTTGAGGAGGTGA+AGG | - | chr4_4:51434277-51434296 | None:intergenic | 60.0% | |
| GAGTTGGAGTGGGGTTGAGG+AGG | - | chr4_4:51434283-51434302 | None:intergenic | 60.0% | |
| TGGCGAGGAGGAGTTTGTGG+AGG | - | chr4_4:51434315-51434334 | None:intergenic | 60.0% | |
| CTCGCTGAATCCACTCTCCC+CGG | + | chr4_4:51434370-51434389 | Msa0686800:CDS | 60.0% | |
| ! | AGATGGGTTTCCGGGGAGAG+TGG | - | chr4_4:51434383-51434402 | None:intergenic | 60.0% |
| ! | CGGGTTGAGATGGGTTTCCG+GGG | - | chr4_4:51434390-51434409 | None:intergenic | 60.0% |
| !! | GCAGCGATGACGGGTTGAGA+TGG | - | chr4_4:51434400-51434419 | None:intergenic | 60.0% |
| TGGGGAGGTGAATAGGGCTC+GGG | + | chr4_4:51434564-51434583 | Msa0686800:CDS | 60.0% | |
| ! | GGGTATGGGCTGTCTTGGAG+TGG | + | chr4_4:51434715-51434734 | Msa0686800:CDS | 60.0% |
| GGGTGGCGAGGAGGAGTTTG+TGG | - | chr4_4:51434318-51434337 | None:intergenic | 65.0% | |
| ! | CATCGGAAGTGTGGGTGGCG+AGG | - | chr4_4:51434330-51434349 | None:intergenic | 65.0% |
| ! | CGGAAGTGTGGGTGGCGAGG+AGG | - | chr4_4:51434327-51434346 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 51434098 | 51436850 | 51434098 | ID=Msa0686800;Name=Msa0686800 |
| chr4_4 | mRNA | 51434098 | 51436850 | 51434098 | ID=Msa0686800-mRNA-1;Parent=Msa0686800;Name=Msa0686800-mRNA-1;_AED=0.12;_eAED=0.12;_QI=38|1|1|1|1|1|6|367|405 |
| chr4_4 | exon | 51434098 | 51434447 | 51434098 | ID=Msa0686800-mRNA-1:exon:13273;Parent=Msa0686800-mRNA-1 |
| chr4_4 | exon | 51434535 | 51434846 | 51434535 | ID=Msa0686800-mRNA-1:exon:13274;Parent=Msa0686800-mRNA-1 |
| chr4_4 | exon | 51434958 | 51435101 | 51434958 | ID=Msa0686800-mRNA-1:exon:13275;Parent=Msa0686800-mRNA-1 |
| chr4_4 | exon | 51435675 | 51435799 | 51435675 | ID=Msa0686800-mRNA-1:exon:13276;Parent=Msa0686800-mRNA-1 |
| chr4_4 | exon | 51435988 | 51436083 | 51435988 | ID=Msa0686800-mRNA-1:exon:13277;Parent=Msa0686800-mRNA-1 |
| chr4_4 | exon | 51436255 | 51436850 | 51436255 | ID=Msa0686800-mRNA-1:exon:13278;Parent=Msa0686800-mRNA-1 |
| chr4_4 | five_prime_UTR | 51434098 | 51434135 | 51434098 | ID=Msa0686800-mRNA-1:five_prime_utr;Parent=Msa0686800-mRNA-1 |
| chr4_4 | CDS | 51434136 | 51434447 | 51434136 | ID=Msa0686800-mRNA-1:cds;Parent=Msa0686800-mRNA-1 |
| chr4_4 | CDS | 51434535 | 51434846 | 51434535 | ID=Msa0686800-mRNA-1:cds;Parent=Msa0686800-mRNA-1 |
| chr4_4 | CDS | 51434958 | 51435101 | 51434958 | ID=Msa0686800-mRNA-1:cds;Parent=Msa0686800-mRNA-1 |
| chr4_4 | CDS | 51435675 | 51435799 | 51435675 | ID=Msa0686800-mRNA-1:cds;Parent=Msa0686800-mRNA-1 |
| chr4_4 | CDS | 51435988 | 51436083 | 51435988 | ID=Msa0686800-mRNA-1:cds;Parent=Msa0686800-mRNA-1 |
| chr4_4 | CDS | 51436255 | 51436483 | 51436255 | ID=Msa0686800-mRNA-1:cds;Parent=Msa0686800-mRNA-1 |
| chr4_4 | three_prime_UTR | 51436484 | 51436850 | 51436484 | ID=Msa0686800-mRNA-1:three_prime_utr;Parent=Msa0686800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
