Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606580 | XP_003607178.1 | 95.309 | 405 | 8 | 2 | 1 | 394 | 1 | 405 | 0.0 | 784 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606580 | sp|O22469|MSI3_ARATH | 62.594 | 401 | 128 | 7 | 1 | 380 | 1 | 400 | 2.79e-179 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005020 | Msa0606580 | 0.840242 | 9.782218e-58 | -8.615850e-47 |
| Msa0025580 | Msa0606580 | 0.805538 | 1.272126e-49 | -8.615850e-47 |
| Msa0035270 | Msa0606580 | 0.807603 | 4.663194e-50 | -8.615850e-47 |
| Msa0035340 | Msa0606580 | 0.831470 | 1.638878e-55 | -8.615850e-47 |
| Msa0035380 | Msa0606580 | 0.817867 | 2.638796e-52 | -8.615850e-47 |
| Msa0053070 | Msa0606580 | 0.848093 | 7.635451e-60 | -8.615850e-47 |
| Msa0056180 | Msa0606580 | 0.809961 | 1.460320e-50 | -8.615850e-47 |
| Msa0074030 | Msa0606580 | 0.804532 | 2.064567e-49 | -8.615850e-47 |
| Msa0098410 | Msa0606580 | 0.836183 | 1.086160e-56 | -8.615850e-47 |
| Msa0606580 | Msa0647280 | 0.985224 | 6.607420e-163 | -8.615850e-47 |
| Msa0606580 | Msa0658640 | 0.802688 | 4.981267e-49 | -8.615850e-47 |
| Msa0606580 | Msa0666700 | 0.800015 | 1.756748e-48 | -8.615850e-47 |
| Msa0606580 | Msa0686800 | 0.984553 | 6.775325e-161 | -8.615850e-47 |
| Msa0606580 | Msa0703600 | 0.801955 | 7.053424e-49 | -8.615850e-47 |
| Msa0606580 | Msa0709200 | 0.805143 | 1.539318e-49 | -8.615850e-47 |
| Msa0606580 | Msa0709440 | 0.817389 | 3.382792e-52 | -8.615850e-47 |
| Msa0606580 | Msa0735780 | 0.802287 | 6.025818e-49 | -8.615850e-47 |
| Msa0606580 | Msa0747740 | 0.835258 | 1.863598e-56 | -8.615850e-47 |
| Msa0606580 | Msa0780910 | 0.802915 | 4.472380e-49 | -8.615850e-47 |
| Msa0606580 | Msa0838240 | 0.807286 | 5.444999e-50 | -8.615850e-47 |
| Msa0606580 | Msa0881290 | 0.824449 | 8.022130e-54 | -8.615850e-47 |
| Msa0606580 | Msa0909760 | 0.807490 | 4.927205e-50 | -8.615850e-47 |
| Msa0606580 | Msa0966480 | 0.803625 | 3.188037e-49 | -8.615850e-47 |
| Msa0606580 | Msa1024180 | 0.862713 | 4.170528e-64 | -8.615850e-47 |
| Msa0606580 | Msa1042160 | 0.804257 | 2.356350e-49 | -8.615850e-47 |
| Msa0606580 | Msa1042190 | 0.804766 | 1.845433e-49 | -8.615850e-47 |
| Msa0606580 | Msa1078150 | 0.811818 | 5.786574e-51 | -8.615850e-47 |
| Msa0606580 | Msa1078870 | 0.813875 | 2.051159e-51 | -8.615850e-47 |
| Msa0606580 | Msa1078880 | 0.803192 | 3.919559e-49 | -8.615850e-47 |
| Msa0606580 | Msa1084530 | 0.812345 | 4.443414e-51 | -8.615850e-47 |
| Msa0606580 | Msa1094010 | 0.815935 | 7.162797e-52 | -8.615850e-47 |
| Msa0606580 | Msa1125820 | 0.818600 | 1.800764e-52 | -8.615850e-47 |
| Msa0606580 | Msa1125990 | 0.821580 | 3.743284e-53 | -8.615850e-47 |
| Msa0606580 | Msa1132530 | 0.802095 | 6.600406e-49 | -8.615850e-47 |
| Msa0606580 | Msa1152120 | 0.809181 | 2.148271e-50 | -8.615850e-47 |
| Msa0606580 | Msa1167470 | 0.800429 | 1.447581e-48 | -8.615850e-47 |
| Msa0606580 | Msa1169180 | 0.808714 | 2.704481e-50 | -8.615850e-47 |
| Msa0606580 | Msa1171290 | 0.810385 | 1.183474e-50 | -8.615850e-47 |
| Msa0606580 | Msa1174780 | 0.819359 | 1.210816e-52 | -8.615850e-47 |
| Msa0606580 | Msa1217050 | 0.812221 | 4.727588e-51 | -8.615850e-47 |
| Msa0606580 | Msa1244240 | 0.801549 | 8.545588e-49 | -8.615850e-47 |
| Msa0606580 | Msa1262590 | 0.806725 | 7.153693e-50 | -8.615850e-47 |
| Msa0606580 | Msa1276830 | 0.822500 | 2.291887e-53 | -8.615850e-47 |
| Msa0606580 | Msa1343260 | 0.815775 | 7.775544e-52 | -8.615850e-47 |
| Msa0606580 | Msa1414170 | 0.816462 | 5.462728e-52 | -8.615850e-47 |
| Msa0606580 | Msa1421570 | 0.832166 | 1.103640e-55 | -8.615850e-47 |
| Msa0606580 | Msa1426120 | 0.810318 | 1.223342e-50 | -8.615850e-47 |
| Msa0606580 | Msa1462490 | 0.806500 | 7.981069e-50 | -8.615850e-47 |
| Msa0146650 | Msa0606580 | 0.801289 | 9.657281e-49 | -8.615850e-47 |
| Msa0189700 | Msa0606580 | 0.824714 | 6.950371e-54 | -8.615850e-47 |
| Msa0202290 | Msa0606580 | 0.805740 | 1.153588e-49 | -8.615850e-47 |
| Msa0209980 | Msa0606580 | 0.801685 | 8.011800e-49 | -8.615850e-47 |
| Msa0232010 | Msa0606580 | 0.823176 | 1.594688e-53 | -8.615850e-47 |
| Msa0232080 | Msa0606580 | 0.822262 | 2.602994e-53 | -8.615850e-47 |
| Msa0367520 | Msa0606580 | 0.818672 | 1.734321e-52 | -8.615850e-47 |
| Msa0422050 | Msa0606580 | 0.813305 | 2.737870e-51 | -8.615850e-47 |
| Msa0481890 | Msa0606580 | 0.816004 | 6.915131e-52 | -8.615850e-47 |
| Msa0250870 | Msa0606580 | 0.801401 | 9.161298e-49 | -8.615850e-47 |
| Msa0283800 | Msa0606580 | 0.820214 | 7.720925e-53 | -8.615850e-47 |
| Msa0321920 | Msa0606580 | 0.815233 | 1.026949e-51 | -8.615850e-47 |
| Msa0526420 | Msa0606580 | 0.804163 | 2.464378e-49 | -8.615850e-47 |
| Msa0532050 | Msa0606580 | 0.865185 | 7.091968e-65 | -8.615850e-47 |
| Msa0567170 | Msa0606580 | 0.816082 | 6.642297e-52 | -8.615850e-47 |
| Msa0591170 | Msa0606580 | 0.811855 | 5.681006e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606580 | MtrunA17_Chr4g0036951 | 95.309 | 405 | 8 | 2 | 1 | 394 | 1 | 405 | 0.0 | 784 |
| Msa0606580 | MtrunA17_Chr4g0052291 | 52.296 | 392 | 162 | 5 | 17 | 384 | 24 | 414 | 2.59e-134 | 391 |
| Msa0606580 | MtrunA17_Chr2g0299271 | 28.806 | 427 | 248 | 10 | 11 | 384 | 56 | 479 | 3.56e-51 | 179 |
| Msa0606580 | MtrunA17_Chr2g0330271 | 28.670 | 436 | 243 | 12 | 13 | 384 | 17 | 448 | 1.65e-44 | 160 |
| Msa0606580 | MtrunA17_Chr8g0377441 | 28.188 | 298 | 173 | 8 | 106 | 366 | 157 | 450 | 7.03e-27 | 111 |
| Msa0606580 | MtrunA17_Chr5g0406931 | 27.961 | 304 | 171 | 13 | 104 | 366 | 142 | 438 | 4.74e-22 | 97.4 |
| Msa0606580 | MtrunA17_Chr2g0283891 | 26.809 | 235 | 160 | 3 | 96 | 325 | 47 | 274 | 6.96e-20 | 89.7 |
| Msa0606580 | MtrunA17_Chr6g0448921 | 32.524 | 206 | 120 | 9 | 142 | 343 | 50 | 240 | 6.72e-16 | 79.7 |
| Msa0606580 | MtrunA17_Chr5g0401661 | 26.971 | 241 | 128 | 8 | 147 | 344 | 433 | 668 | 6.17e-14 | 73.6 |
| Msa0606580 | MtrunA17_Chr4g0053651 | 24.370 | 238 | 146 | 9 | 147 | 376 | 326 | 537 | 2.08e-12 | 68.6 |
| Msa0606580 | MtrunA17_Chr3g0143791 | 26.500 | 200 | 137 | 6 | 172 | 366 | 141 | 335 | 3.05e-12 | 67.4 |
| Msa0606580 | MtrunA17_Chr5g0438901 | 29.268 | 164 | 105 | 5 | 157 | 319 | 428 | 581 | 4.93e-12 | 67.8 |
| Msa0606580 | MtrunA17_Chr5g0401671 | 25.581 | 215 | 113 | 7 | 147 | 318 | 343 | 553 | 6.58e-12 | 67.0 |
| Msa0606580 | MtrunA17_Chr3g0093681 | 27.053 | 207 | 127 | 7 | 166 | 372 | 370 | 552 | 7.21e-12 | 67.0 |
| Msa0606580 | MtrunA17_Chr2g0281451 | 30.412 | 194 | 115 | 9 | 167 | 352 | 73 | 254 | 1.39e-11 | 66.6 |
| Msa0606580 | MtrunA17_Chr8g0352821 | 26.906 | 223 | 133 | 9 | 167 | 382 | 282 | 481 | 4.61e-11 | 64.7 |
| Msa0606580 | MtrunA17_Chr5g0396821 | 28.221 | 163 | 108 | 3 | 157 | 319 | 776 | 929 | 5.90e-11 | 64.3 |
| Msa0606580 | MtrunA17_Chr4g0020111 | 27.222 | 180 | 116 | 5 | 147 | 316 | 118 | 292 | 5.98e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606580 | AT4G35050.1 | 62.594 | 401 | 128 | 7 | 1 | 380 | 1 | 400 | 2.84e-180 | 508 |
| Msa0606580 | AT2G16780.1 | 62.035 | 403 | 134 | 5 | 1 | 384 | 1 | 403 | 2.91e-179 | 505 |
| Msa0606580 | AT5G58230.1 | 51.378 | 399 | 166 | 5 | 13 | 384 | 17 | 414 | 3.39e-137 | 399 |
| Msa0606580 | AT2G19520.1 | 28.868 | 433 | 245 | 9 | 6 | 380 | 57 | 484 | 8.04e-51 | 178 |
| Msa0606580 | AT4G29730.1 | 27.816 | 435 | 245 | 11 | 6 | 384 | 47 | 468 | 2.59e-46 | 166 |
| Msa0606580 | AT4G29730.3 | 27.763 | 389 | 217 | 12 | 6 | 344 | 47 | 421 | 1.03e-36 | 139 |
| Msa0606580 | AT4G29730.2 | 27.763 | 389 | 217 | 12 | 6 | 344 | 47 | 421 | 1.03e-36 | 139 |
| Msa0606580 | AT2G19540.1 | 30.844 | 308 | 165 | 12 | 100 | 366 | 149 | 449 | 1.73e-30 | 122 |
| Msa0606580 | AT1G29260.1 | 26.857 | 175 | 122 | 1 | 142 | 316 | 97 | 265 | 4.60e-17 | 81.6 |
| Msa0606580 | AT5G08390.1 | 28.230 | 209 | 126 | 6 | 165 | 373 | 72 | 256 | 1.41e-15 | 79.3 |
| Msa0606580 | AT5G23430.1 | 28.019 | 207 | 125 | 6 | 167 | 373 | 74 | 256 | 9.18e-15 | 76.6 |
| Msa0606580 | AT5G23430.3 | 28.019 | 207 | 125 | 6 | 167 | 373 | 74 | 256 | 9.68e-15 | 76.6 |
| Msa0606580 | AT5G23430.2 | 28.019 | 207 | 125 | 6 | 167 | 373 | 74 | 256 | 9.68e-15 | 76.6 |
| Msa0606580 | AT5G67320.1 | 24.715 | 263 | 162 | 10 | 124 | 376 | 336 | 572 | 3.42e-14 | 74.7 |
| Msa0606580 | AT1G20540.1 | 27.711 | 166 | 110 | 4 | 207 | 366 | 175 | 336 | 4.47e-13 | 70.5 |
| Msa0606580 | AT3G63460.3 | 24.206 | 252 | 161 | 7 | 147 | 388 | 118 | 349 | 5.32e-13 | 71.2 |
| Msa0606580 | AT3G63460.2 | 24.206 | 252 | 161 | 7 | 147 | 388 | 118 | 349 | 5.77e-13 | 71.2 |
| Msa0606580 | AT3G63460.1 | 24.206 | 252 | 161 | 7 | 147 | 388 | 118 | 349 | 5.93e-13 | 71.2 |
| Msa0606580 | AT2G32950.1 | 29.193 | 161 | 105 | 3 | 157 | 317 | 426 | 577 | 7.95e-13 | 70.5 |
| Msa0606580 | AT2G32950.2 | 29.193 | 161 | 105 | 3 | 157 | 317 | 313 | 464 | 8.44e-13 | 70.5 |
| Msa0606580 | AT4G11110.1 | 29.268 | 164 | 107 | 3 | 156 | 319 | 777 | 931 | 2.29e-12 | 69.3 |
| Msa0606580 | AT4G35370.1 | 22.422 | 223 | 144 | 3 | 161 | 375 | 177 | 378 | 4.24e-12 | 67.8 |
| Msa0606580 | AT1G61210.3 | 30.464 | 151 | 95 | 5 | 167 | 317 | 73 | 213 | 8.14e-12 | 67.8 |
| Msa0606580 | AT1G61210.1 | 30.464 | 151 | 95 | 5 | 167 | 317 | 73 | 213 | 8.19e-12 | 67.8 |
| Msa0606580 | AT1G61210.2 | 30.464 | 151 | 95 | 5 | 167 | 317 | 73 | 213 | 8.33e-12 | 67.8 |
| Msa0606580 | AT5G13480.3 | 31.544 | 149 | 93 | 4 | 167 | 315 | 210 | 349 | 9.59e-12 | 67.0 |
| Msa0606580 | AT5G13480.4 | 31.544 | 149 | 93 | 4 | 167 | 315 | 210 | 349 | 9.71e-12 | 67.0 |
| Msa0606580 | AT5G13480.1 | 31.544 | 149 | 93 | 4 | 167 | 315 | 222 | 361 | 9.73e-12 | 67.0 |
| Msa0606580 | AT5G13480.2 | 31.544 | 149 | 93 | 4 | 167 | 315 | 233 | 372 | 1.10e-11 | 67.0 |
| Msa0606580 | AT1G11160.1 | 30.464 | 151 | 95 | 6 | 167 | 317 | 73 | 213 | 1.53e-11 | 66.6 |
| Msa0606580 | AT1G11160.2 | 30.464 | 151 | 95 | 6 | 167 | 317 | 73 | 213 | 1.65e-11 | 66.6 |
| Msa0606580 | AT1G11160.4 | 30.464 | 151 | 95 | 6 | 167 | 317 | 73 | 213 | 1.78e-11 | 66.6 |
| Msa0606580 | AT1G11160.3 | 30.464 | 151 | 95 | 6 | 167 | 317 | 31 | 171 | 1.85e-11 | 66.6 |
Find 143 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACTGCAAGTTGGTAATT+TGG | 0.200192 | 4_2:+53178457 | Msa0606580:CDS |
| GAGGAGTTTGTGGAGGTTAA+AGG | 0.205640 | 4_2:-53177734 | None:intergenic |
| GACGGGTTGAGATGGGTTTC+CGG | 0.242362 | 4_2:-53177818 | None:intergenic |
| TTCAGCGAGCATGAGGTAAT+TGG | 0.242797 | 4_2:-53177785 | None:intergenic |
| AAATTACCCATGGCTGGTTT+TGG | 0.254020 | 4_2:-53179754 | None:intergenic |
| TAATGGTTTGGGACCTTAAC+AGG | 0.280289 | 4_2:+53179459 | Msa0606580:CDS |
| TTGCATAATGAGAATTTGTT+TGG | 0.282089 | 4_2:+53178423 | Msa0606580:CDS |
| ACGGGTTGAGATGGGTTTCC+GGG | 0.287427 | 4_2:-53177817 | None:intergenic |
| CACGTTTGATACATCTGTTC+TGG | 0.300052 | 4_2:-53180051 | None:intergenic |
| CCACTGTGCTTGTTGAAACT+TGG | 0.306097 | 4_2:+53180110 | Msa0606580:three_prime_UTR |
| TGACTGCAAGTTGGTAATTT+GGG | 0.320876 | 4_2:+53178458 | Msa0606580:CDS |
| GAAGAGTTGGAGTGGGGTTG+AGG | 0.330665 | 4_2:-53177712 | None:intergenic |
| CATGGGGTTTGAGTGAATGC+TGG | 0.337025 | 4_2:-53178500 | None:intergenic |
| GCCAAAATCCATTCACTATA+CGG | 0.342837 | 4_2:-53179093 | None:intergenic |
| GGCCTTCCCTTACTGTTCAA+TGG | 0.344219 | 4_2:+53177677 | Msa0606580:CDS |
| TGTTGATGGGGAGGTGAATA+GGG | 0.344389 | 4_2:+53177987 | Msa0606580:CDS |
| ACATCGGTCTCTTTGATTTA+CGG | 0.356527 | 4_2:+53179136 | Msa0606580:CDS |
| TTGTTGATGGGGAGGTGAAT+AGG | 0.360369 | 4_2:+53177986 | Msa0606580:CDS |
| TCCGTATAGTGAATGGATTT+TGG | 0.364343 | 4_2:+53179092 | Msa0606580:CDS |
| CCGATAGAAGGCTAATGGTT+TGG | 0.374191 | 4_2:+53179447 | Msa0606580:CDS |
| CACATATAACAACATAAAAC+TGG | 0.380090 | 4_2:-53179962 | None:intergenic |
| CGATAGAAGGCTAATGGTTT+GGG | 0.389961 | 4_2:+53179448 | Msa0606580:CDS |
| ACACCATTACCTCTCTTTCA+TGG | 0.392547 | 4_2:-53178518 | None:intergenic |
| GGGTGGCGAGGAGGAGTTTG+TGG | 0.394964 | 4_2:-53177744 | None:intergenic |
| CACCATTACCTCTCTTTCAT+GGG | 0.396455 | 4_2:-53178517 | None:intergenic |
| CTTTCAGTCCGTATAGTGAA+TGG | 0.398232 | 4_2:+53179085 | Msa0606580:CDS |
| AGGATAATTCTTTCCATGTC+TGG | 0.402026 | 4_2:+53179789 | Msa0606580:CDS |
| CCATGAGAGAAGAGTAGTTC+GGG | 0.404136 | 4_2:-53179695 | None:intergenic |
| TATCAAACGTGAAAAGGTAT+TGG | 0.417760 | 4_2:+53180063 | Msa0606580:three_prime_UTR |
| ACTCAGAGGATTCTTGTTGA+TGG | 0.422181 | 4_2:+53177973 | Msa0606580:CDS |
| TGCATAATGAGAATTTGTTT+GGG | 0.426082 | 4_2:+53178424 | Msa0606580:CDS |
| CTCAGAGGATTCTTGTTGAT+GGG | 0.427906 | 4_2:+53177974 | Msa0606580:CDS |
| GTGTAGAGATGAGGTATTCC+AGG | 0.429704 | 4_2:+53179379 | Msa0606580:intron |
| CATCTTCTAGTGCCGATAGA+AGG | 0.430615 | 4_2:+53179435 | Msa0606580:CDS |
| AGCCTTCTTCTAGTTAGTGC+TGG | 0.431392 | 4_2:-53179871 | None:intergenic |
| TTCTTTCCATGTCTGGCAAA+TGG | 0.431405 | 4_2:+53179796 | Msa0606580:CDS |
| ATTTGCTTGTGGGATGTGTT+TGG | 0.433764 | 4_2:+53178210 | Msa0606580:CDS |
| TAGTGCCGATAGAAGGCTAA+TGG | 0.434981 | 4_2:+53179442 | Msa0606580:CDS |
| AATGAGAATTTGTTTGGGTC+TGG | 0.440769 | 4_2:+53178429 | Msa0606580:CDS |
| TTCAGGATCTGCAGCGATGA+CGG | 0.441099 | 4_2:-53177836 | None:intergenic |
| CACTTGAAATTACCCATGGC+TGG | 0.444884 | 4_2:-53179760 | None:intergenic |
| TCAGCGAGCATGAGGTAATT+GGG | 0.453601 | 4_2:-53177784 | None:intergenic |
| AAGAAGGGTATGGGCTGTCT+TGG | 0.455286 | 4_2:+53178139 | Msa0606580:CDS |
| TGACCCTTCAACCTAAAATC+AGG | 0.455708 | 4_2:-53178111 | None:intergenic |
| TGATGCTGTTCATGTTTATG+AGG | 0.456896 | 4_2:+53178254 | Msa0606580:CDS |
| CTGTCTAAATCATGGTGCTT+GGG | 0.461163 | 4_2:-53180235 | None:intergenic |
| AGTTGGTAATTTGGGATTTG+CGG | 0.462658 | 4_2:+53178466 | Msa0606580:CDS |
| GTGGAGGTTAAAGGAAGAGT+TGG | 0.463186 | 4_2:-53177725 | None:intergenic |
| ATGGCGATGATGACAACAAT+TGG | 0.467987 | 4_2:+53179837 | Msa0606580:CDS |
| ATGGGGAGGTGAATAGGGCT+CGG | 0.471067 | 4_2:+53177992 | Msa0606580:CDS |
| GAGTGGGGTTGAGGAGGTGA+AGG | 0.476171 | 4_2:-53177703 | None:intergenic |
| CAGATGTATCAAACGTGAAA+AGG | 0.476564 | 4_2:+53180057 | Msa0606580:three_prime_UTR |
| CTGATAGAGGGAGATGAAGA+AGG | 0.477552 | 4_2:+53179665 | Msa0606580:CDS |
| TCCATGAGAGAAGAGTAGTT+CGG | 0.477596 | 4_2:-53179696 | None:intergenic |
| GGTTAGGATCCCACTCTACC+TGG | 0.480679 | 4_2:-53179397 | None:intergenic |
| TTTACTAAGGAGAGAGGGGA+GGG | 0.481005 | 4_2:+53178081 | Msa0606580:intron |
| GCCAACACTCCCTCGTGGTT+AGG | 0.483885 | 4_2:-53179413 | None:intergenic |
| ATGAAGAGATCGTAGAGAAG+AGG | 0.487047 | 4_2:-53177637 | None:intergenic |
| TGAAGGGTCATGAGAAAGAA+GGG | 0.487057 | 4_2:+53178124 | Msa0606580:CDS |
| GATTGGGGATGAGCTGATAG+AGG | 0.487572 | 4_2:+53179652 | Msa0606580:CDS |
| TCAGGATCTGCAGCGATGAC+GGG | 0.487640 | 4_2:-53177835 | None:intergenic |
| CAGCGATGACGGGTTGAGAT+GGG | 0.493487 | 4_2:-53177825 | None:intergenic |
| GAGTTGGAGTGGGGTTGAGG+AGG | 0.500046 | 4_2:-53177709 | None:intergenic |
| TGGGTTCTTCATCGGAAGTG+TGG | 0.501819 | 4_2:-53177765 | None:intergenic |
| ATGGGGTTTGAGTGAATGCT+GGG | 0.505125 | 4_2:-53178499 | None:intergenic |
| CCCGAACTACTCTTCTCTCA+TGG | 0.505384 | 4_2:+53179695 | Msa0606580:CDS |
| TTGAAGGGTCATGAGAAAGA+AGG | 0.507504 | 4_2:+53178123 | Msa0606580:CDS |
| GCAGCGATGACGGGTTGAGA+TGG | 0.508458 | 4_2:-53177826 | None:intergenic |
| TGATCATAAGATTTGCTTGT+GGG | 0.509495 | 4_2:+53178200 | Msa0606580:CDS |
| CCTGTCTAAATCATGGTGCT+TGG | 0.510500 | 4_2:-53180236 | None:intergenic |
| GAGGTAATTGGGTTCTTCAT+CGG | 0.512602 | 4_2:-53177773 | None:intergenic |
| GGTCATGAGAAAGAAGGGTA+TGG | 0.513903 | 4_2:+53178129 | Msa0606580:CDS |
| TCTAGAACAATGCAGGTTGA+AGG | 0.521112 | 4_2:-53180204 | None:intergenic |
| AAGGAAGCCATTGAACAGTA+AGG | 0.522364 | 4_2:-53177684 | None:intergenic |
| CATGGAACCAAAACCAGCCA+TGG | 0.522424 | 4_2:+53179747 | Msa0606580:CDS |
| TGAAAACCCTATTCTTCCAA+AGG | 0.526040 | 4_2:+53177855 | Msa0606580:CDS |
| CTCGCTGAATCCACTCTCCC+CGG | 0.528576 | 4_2:+53177799 | Msa0606580:CDS |
| ATGAGGTATTCCAGGTAGAG+TGG | 0.529343 | 4_2:+53179387 | Msa0606580:CDS |
| TTTCAGCCATTTGCCAGACA+TGG | 0.531242 | 4_2:-53179802 | None:intergenic |
| AGATGGGTTTCCGGGGAGAG+TGG | 0.533865 | 4_2:-53177809 | None:intergenic |
| GAGAATTTGTTTGGGTCTGG+TGG | 0.535452 | 4_2:+53178432 | Msa0606580:CDS |
| TCCTAACCACGAGGGAGTGT+TGG | 0.537952 | 4_2:+53179412 | Msa0606580:CDS |
| GGGTATGGGCTGTCTTGGAG+TGG | 0.547685 | 4_2:+53178144 | Msa0606580:CDS |
| TCATCTCACACCCTCTCGCA+TGG | 0.548562 | 4_2:+53177656 | Msa0606580:CDS |
| TTCTCTCATGGAGGTCACAA+AGG | 0.553409 | 4_2:+53179707 | Msa0606580:CDS |
| GTTAAAGGAAGAGTTGGAGT+GGG | 0.555334 | 4_2:-53177719 | None:intergenic |
| GGGTTCTTCATCGGAAGTGT+GGG | 0.556214 | 4_2:-53177764 | None:intergenic |
| TCAGAGGATTCTTGTTGATG+GGG | 0.558512 | 4_2:+53177975 | Msa0606580:CDS |
| GCTGAAAGCATCTACAATGA+TGG | 0.565727 | 4_2:+53179818 | Msa0606580:CDS |
| TGCGAAGACTTGTAATTCAG+AGG | 0.566003 | 4_2:+53178044 | Msa0606580:CDS |
| CTTTGATTTACGGAAGCTTG+AGG | 0.566055 | 4_2:+53179146 | Msa0606580:CDS |
| CGATGATGACAACAATTGGA+TGG | 0.567266 | 4_2:+53179841 | Msa0606580:CDS |
| GACCAGCACTAACTAGAAGA+AGG | 0.567897 | 4_2:+53179869 | Msa0606580:exon |
| CCAAACCATTAGCCTTCTAT+CGG | 0.569337 | 4_2:-53179447 | None:intergenic |
| TTAAAGGAAGAGTTGGAGTG+GGG | 0.573089 | 4_2:-53177718 | None:intergenic |
| CAAGGAATCTAGAACAATGC+AGG | 0.574983 | 4_2:-53180211 | None:intergenic |
| GTCATGAGAAAGAAGGGTAT+GGG | 0.577823 | 4_2:+53178130 | Msa0606580:CDS |
| GAGGATTCTTGTTGATGGGG+AGG | 0.577872 | 4_2:+53177978 | Msa0606580:CDS |
| TGGGGAGGTGAATAGGGCTC+GGG | 0.577992 | 4_2:+53177993 | Msa0606580:CDS |
| CTAACTAGAAGAAGGCTCAA+AGG | 0.585001 | 4_2:+53179877 | Msa0606580:exon |
| TTCTTCATCGGAAGTGTGGG+TGG | 0.585703 | 4_2:-53177761 | None:intergenic |
| CATCGGAAGTGTGGGTGGCG+AGG | 0.587425 | 4_2:-53177756 | None:intergenic |
| CGGAAGTGTGGGTGGCGAGG+AGG | 0.592106 | 4_2:-53177753 | None:intergenic |
| AAATCATGGTGCTTGGGACA+AGG | 0.592412 | 4_2:-53180229 | None:intergenic |
| ACCATTACCTCTCTTTCATG+GGG | 0.593239 | 4_2:-53178516 | None:intergenic |
| GGTAATTTCAAGTGTAGCTG+AGG | 0.595021 | 4_2:+53179769 | Msa0606580:CDS |
| GCAACAACATTCGCATTCTG+TGG | 0.595065 | 4_2:-53178021 | None:intergenic |
| TTCATGATGACTCAGGATTG+GGG | 0.595806 | 4_2:+53179637 | Msa0606580:intron |
| TAAGGGAAGGCCATGCGAGA+GGG | 0.598709 | 4_2:-53177666 | None:intergenic |
| GGTTAAAGGAAGAGTTGGAG+TGG | 0.603090 | 4_2:-53177720 | None:intergenic |
| TGAGGTATTCCAGGTAGAGT+GGG | 0.604028 | 4_2:+53179388 | Msa0606580:CDS |
| CGGGTTGAGATGGGTTTCCG+GGG | 0.604951 | 4_2:-53177816 | None:intergenic |
| ATGCAGGTTGAAGGATTCAG+TGG | 0.605968 | 4_2:-53180195 | None:intergenic |
| TATTGTGCTTGTTGAAACAA+TGG | 0.606831 | 4_2:+53179989 | Msa0606580:three_prime_UTR |
| GCTTGTTGAAACAATGGTGG+TGG | 0.613191 | 4_2:+53179995 | Msa0606580:three_prime_UTR |
| TGGCGAGGAGGAGTTTGTGG+AGG | 0.615770 | 4_2:-53177741 | None:intergenic |
| TAAATCAAAGAGACCGATGT+CGG | 0.616345 | 4_2:-53179133 | None:intergenic |
| GAGTGGATTCAGCGAGCATG+AGG | 0.617545 | 4_2:-53177792 | None:intergenic |
| TGAGAGAAGAGTAGTTCGGG+AGG | 0.620188 | 4_2:-53179692 | None:intergenic |
| ACTCAAACCCCATGAAAGAG+AGG | 0.622281 | 4_2:+53178509 | Msa0606580:CDS |
| ATTGGGGATGAGCTGATAGA+GGG | 0.628114 | 4_2:+53179653 | Msa0606580:CDS |
| GTGTGGTTGAAGATGTGTCT+TGG | 0.629529 | 4_2:+53178397 | Msa0606580:CDS |
| AGCCATTGAACAGTAAGGGA+AGG | 0.631871 | 4_2:-53177679 | None:intergenic |
| ATGGAACCAAAACCAGCCAT+GGG | 0.633074 | 4_2:+53179748 | Msa0606580:CDS |
| CAAACAAAACAACAAAGCAA+TGG | 0.635418 | 4_2:-53179914 | None:intergenic |
| GTAAGGGAAGGCCATGCGAG+AGG | 0.641787 | 4_2:-53177667 | None:intergenic |
| AGGAAGCCATTGAACAGTAA+GGG | 0.642100 | 4_2:-53177683 | None:intergenic |
| ATGATCATAAGATTTGCTTG+TGG | 0.642906 | 4_2:+53178199 | Msa0606580:CDS |
| CGAAACCGAAAACGAAGCAG+AGG | 0.656030 | 4_2:+53177579 | Msa0606580:CDS |
| GCTACACTTGAAATTACCCA+TGG | 0.657118 | 4_2:-53179764 | None:intergenic |
| GCATCTTCAGACACCGACAT+CGG | 0.660753 | 4_2:+53179120 | Msa0606580:CDS |
| CCAAGTTTCAACAAGCACAG+TGG | 0.661112 | 4_2:-53180110 | None:intergenic |
| GTGTTAGGGACATGAAAGTG+TGG | 0.665723 | 4_2:+53178380 | Msa0606580:intron |
| GATGATGACAACAATTGGAT+GGG | 0.672812 | 4_2:+53179842 | Msa0606580:CDS |
| TGGTGGAGATGACTGCAAGT+TGG | 0.682617 | 4_2:+53178449 | Msa0606580:CDS |
| ATAGAGGGAGATGAAGAAGG+TGG | 0.694464 | 4_2:+53179668 | Msa0606580:CDS |
| TGGCTACTTAGAAAATGCAG+TGG | 0.707079 | 4_2:-53179171 | None:intergenic |
| GAACTACTCTTCTCTCATGG+AGG | 0.707424 | 4_2:+53179698 | Msa0606580:CDS |
| TATAGGTGGAGATTACTCAG+AGG | 0.710079 | 4_2:+53177959 | Msa0606580:intron |
| AAGATGCCAACACTCCCTCG+TGG | 0.712873 | 4_2:-53179418 | None:intergenic |
| TGTGCTTGTTGAAACAATGG+TGG | 0.729223 | 4_2:+53179992 | Msa0606580:three_prime_UTR |
| GAGTGGGATCCTAACCACGA+GGG | 0.751517 | 4_2:+53179404 | Msa0606580:CDS |
| AGAGTGGGATCCTAACCACG+AGG | 0.769525 | 4_2:+53179403 | Msa0606580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATCATTTTTCTTATACA+CGG | + | chr4_2:53178721-53178740 | Msa0606580:intron | 15.0% |
| !! | GAAAAAAAATCAAAAACCTT+TGG | - | chr4_2:53177874-53177893 | None:intergenic | 20.0% |
| !!! | TGTTTGTTGTTTGTTTTTAT+AGG | + | chr4_2:53177942-53177961 | Msa0606580:intron | 20.0% |
| !!! | TTATGTGTTTGATTTTACTA+AGG | + | chr4_2:53178068-53178087 | Msa0606580:intron | 20.0% |
| !!! | ATGAGAATTGATTTGATAAT+TGG | + | chr4_2:53178282-53178301 | Msa0606580:intron | 20.0% |
| !! | GAAGTTAAATTCCAATTAAT+GGG | + | chr4_2:53178853-53178872 | Msa0606580:intron | 20.0% |
| !! | AAGTTAAATTCCAATTAATG+GGG | + | chr4_2:53178854-53178873 | Msa0606580:intron | 20.0% |
| !!! | GAAAAATATCAGATTTTTCA+TGG | + | chr4_2:53179729-53179748 | Msa0606580:CDS | 20.0% |
| !! | ATGAACAAAATCTCAAAAAT+TGG | + | chr4_2:53180144-53180163 | Msa0606580:three_prime_UTR | 20.0% |
| !!! | TTGTTGTTTGTTTTTATAGG+TGG | + | chr4_2:53177945-53177964 | Msa0606580:intron | 25.0% |
| !! | TGATAATTGGTGTGTTTTAT+TGG | + | chr4_2:53178295-53178314 | Msa0606580:intron | 25.0% |
| !! | TTGCATAATGAGAATTTGTT+TGG | + | chr4_2:53178423-53178442 | Msa0606580:CDS | 25.0% |
| !! | TGCATAATGAGAATTTGTTT+GGG | + | chr4_2:53178424-53178443 | Msa0606580:CDS | 25.0% |
| !!! | CTTCATAATATTTGTTGTGT+AGG | + | chr4_2:53178543-53178562 | Msa0606580:intron | 25.0% |
| ! | TCTCATAATGTCATAAATGA+AGG | - | chr4_2:53178633-53178652 | None:intergenic | 25.0% |
| ! | AGAAAAATGATAATCCATCA+TGG | - | chr4_2:53178715-53178734 | None:intergenic | 25.0% |
| ! | GGAAGTTAAATTCCAATTAA+TGG | + | chr4_2:53178852-53178871 | Msa0606580:intron | 25.0% |
| ! | AGTTAAATTCCAATTAATGG+GGG | + | chr4_2:53178855-53178874 | Msa0606580:intron | 25.0% |
| ! | ACTGAAAACATAATCAAACA+AGG | - | chr4_2:53178918-53178937 | None:intergenic | 25.0% |
| ! | TATTACTATCTTGTAGTTGA+TGG | + | chr4_2:53179243-53179262 | Msa0606580:intron | 25.0% |
| !!! | AACTGATAAGTTTTTAGCTT+TGG | + | chr4_2:53179312-53179331 | Msa0606580:intron | 25.0% |
| ! | AAAGAAACAAAGAATTCTGT+AGG | - | chr4_2:53179499-53179518 | None:intergenic | 25.0% |
| ! | CATAAACAGAGAATTGAAAT+AGG | + | chr4_2:53179587-53179606 | Msa0606580:intron | 25.0% |
| ! | CACATATAACAACATAAAAC+TGG | - | chr4_2:53179965-53179984 | None:intergenic | 25.0% |
| ! | AACAAAATCTCAAAAATTGG+TGG | + | chr4_2:53180147-53180166 | Msa0606580:three_prime_UTR | 25.0% |
| ! | CAAAAACCTTTGGAAGAATA+GGG | - | chr4_2:53177864-53177883 | None:intergenic | 30.0% |
| ! | TCAAAAACCTTTGGAAGAAT+AGG | - | chr4_2:53177865-53177884 | None:intergenic | 30.0% |
| ACAAACAACAAACATCATTC+AGG | - | chr4_2:53177936-53177955 | None:intergenic | 30.0% | |
| !! | TTTGATTTTACTAAGGAGAG+AGG | + | chr4_2:53178075-53178094 | Msa0606580:intron | 30.0% |
| ! | TTGATTTTACTAAGGAGAGA+GGG | + | chr4_2:53178076-53178095 | Msa0606580:intron | 30.0% |
| !!! | TAATCCTGATTTTAGGTTGA+AGG | + | chr4_2:53178107-53178126 | Msa0606580:CDS | 30.0% |
| !!! | AATCCTGATTTTAGGTTGAA+GGG | + | chr4_2:53178108-53178127 | Msa0606580:CDS | 30.0% |
| ! | ATGATCATAAGATTTGCTTG+TGG | + | chr4_2:53178199-53178218 | Msa0606580:CDS | 30.0% |
| ! | TGATCATAAGATTTGCTTGT+GGG | + | chr4_2:53178200-53178219 | Msa0606580:CDS | 30.0% |
| TTGTGAGGTTAATTTCTGTT+TGG | + | chr4_2:53178323-53178342 | Msa0606580:intron | 30.0% | |
| !! | TAATATTTGTTGTGTAGGCT+AGG | + | chr4_2:53178548-53178567 | Msa0606580:intron | 30.0% |
| TCTTCATCAAGCATATGATA+TGG | + | chr4_2:53178575-53178594 | Msa0606580:intron | 30.0% | |
| ! | AATTGGAATTTAACTTCCGA+TGG | - | chr4_2:53178850-53178869 | None:intergenic | 30.0% |
| GTTAAATTCCAATTAATGGG+GGG | + | chr4_2:53178856-53178875 | Msa0606580:intron | 30.0% | |
| AAACAAGGTAACTTCTCTAT+TGG | - | chr4_2:53178903-53178922 | None:intergenic | 30.0% | |
| CAAAAATACAAACAGACATC+AGG | - | chr4_2:53178999-53179018 | None:intergenic | 30.0% | |
| !! | ATGTCTGTTTGTATTTTTGC+TGG | + | chr4_2:53179000-53179019 | Msa0606580:intron | 30.0% |
| TATGAATCTGTGATAGATGA+AGG | - | chr4_2:53179206-53179225 | None:intergenic | 30.0% | |
| ACATACAAAATCGAATCTAC+AGG | - | chr4_2:53179289-53179308 | None:intergenic | 30.0% | |
| AAACCAAATACGTGAGTAAA+AGG | - | chr4_2:53179349-53179368 | None:intergenic | 30.0% | |
| !! | TTTTTCAATGTGTAGAGATG+AGG | + | chr4_2:53179370-53179389 | Msa0606580:intron | 30.0% |
| GTCATCATGAAAATAAAGCA+TGG | - | chr4_2:53179628-53179647 | None:intergenic | 30.0% | |
| !!! | CTTTATTTTCATGATGACTC+AGG | + | chr4_2:53179630-53179649 | Msa0606580:intron | 30.0% |
| CAAACAAAACAACAAAGCAA+TGG | - | chr4_2:53179917-53179936 | None:intergenic | 30.0% | |
| ! | TATTGTGCTTGTTGAAACAA+TGG | + | chr4_2:53179989-53180008 | Msa0606580:three_prime_UTR | 30.0% |
| ! | TATCAAACGTGAAAAGGTAT+TGG | + | chr4_2:53180063-53180082 | Msa0606580:three_prime_UTR | 30.0% |
| TTGAAGAAGAATTCTCCGTT+TGG | + | chr4_2:53177602-53177621 | Msa0606580:intron | 35.0% | |
| ! | TTTGGAAGAATAGGGTTTTC+AGG | - | chr4_2:53177856-53177875 | None:intergenic | 35.0% |
| TGAAAACCCTATTCTTCCAA+AGG | + | chr4_2:53177855-53177874 | Msa0606580:CDS | 35.0% | |
| ! | TGATTTTACTAAGGAGAGAG+GGG | + | chr4_2:53178077-53178096 | Msa0606580:intron | 35.0% |
| ! | AGGGTTGTAATCCTGATTTT+AGG | + | chr4_2:53178100-53178119 | Msa0606580:CDS | 35.0% |
| !!! | TCTTGGAGTGGTTTTAAGAA+TGG | + | chr4_2:53178156-53178175 | Msa0606580:CDS | 35.0% |
| !!! | CTTGGAGTGGTTTTAAGAAT+GGG | + | chr4_2:53178157-53178176 | Msa0606580:CDS | 35.0% |
| ! | AAGAATGGGTATCTTTTGAG+TGG | + | chr4_2:53178171-53178190 | Msa0606580:CDS | 35.0% |
| TGATGCTGTTCATGTTTATG+AGG | + | chr4_2:53178254-53178273 | Msa0606580:CDS | 35.0% | |
| !!! | GTTTTATTGGTCTTGTTGTG+AGG | + | chr4_2:53178308-53178327 | Msa0606580:intron | 35.0% |
| TGAAATTGTCGTTGAACTTG+TGG | + | chr4_2:53178350-53178369 | Msa0606580:intron | 35.0% | |
| ! | ACTTGTGGTTTTTGTGTGTT+AGG | + | chr4_2:53178365-53178384 | Msa0606580:intron | 35.0% |
| ! | CTTGTGGTTTTTGTGTGTTA+GGG | + | chr4_2:53178366-53178385 | Msa0606580:intron | 35.0% |
| ! | AATGAGAATTTGTTTGGGTC+TGG | + | chr4_2:53178429-53178448 | Msa0606580:CDS | 35.0% |
| !! | ATGACTGCAAGTTGGTAATT+TGG | + | chr4_2:53178457-53178476 | Msa0606580:CDS | 35.0% |
| !! | TGACTGCAAGTTGGTAATTT+GGG | + | chr4_2:53178458-53178477 | Msa0606580:CDS | 35.0% |
| !! | AGTTGGTAATTTGGGATTTG+CGG | + | chr4_2:53178466-53178485 | Msa0606580:CDS | 35.0% |
| ATTATGAGAACCAACCCAAT+TGG | + | chr4_2:53178644-53178663 | Msa0606580:intron | 35.0% | |
| TTATGAGAACCAACCCAATT+GGG | + | chr4_2:53178645-53178664 | Msa0606580:intron | 35.0% | |
| GTCAAAACCTGCAATGAATT+TGG | + | chr4_2:53178688-53178707 | Msa0606580:intron | 35.0% | |
| !! | TCCGTATAGTGAATGGATTT+TGG | + | chr4_2:53179092-53179111 | Msa0606580:CDS | 35.0% |
| GCCAAAATCCATTCACTATA+CGG | - | chr4_2:53179096-53179115 | None:intergenic | 35.0% | |
| TAAATCAAAGAGACCGATGT+CGG | - | chr4_2:53179136-53179155 | None:intergenic | 35.0% | |
| ! | ACATCGGTCTCTTTGATTTA+CGG | + | chr4_2:53179136-53179155 | Msa0606580:CDS | 35.0% |
| ! | GTGTCTTCTTTTACCTGTTA+AGG | - | chr4_2:53179475-53179494 | None:intergenic | 35.0% |
| ! | TTTTCATGATGACTCAGGAT+TGG | + | chr4_2:53179635-53179654 | Msa0606580:intron | 35.0% |
| TTTCATGATGACTCAGGATT+GGG | + | chr4_2:53179636-53179655 | Msa0606580:intron | 35.0% | |
| AGGATAATTCTTTCCATGTC+TGG | + | chr4_2:53179789-53179808 | Msa0606580:CDS | 35.0% | |
| GATGATGACAACAATTGGAT+GGG | + | chr4_2:53179842-53179861 | Msa0606580:CDS | 35.0% | |
| CAGATGTATCAAACGTGAAA+AGG | + | chr4_2:53180057-53180076 | Msa0606580:three_prime_UTR | 35.0% | |
| ! | TTCAACCTCTGCTTCGTTTT+CGG | - | chr4_2:53177587-53177606 | None:intergenic | 40.0% |
| !! | AGGAGTGTTTCTCTTCCAAA+CGG | - | chr4_2:53177620-53177639 | None:intergenic | 40.0% |
| ATGAAGAGATCGTAGAGAAG+AGG | - | chr4_2:53177640-53177659 | None:intergenic | 40.0% | |
| AGGAAGCCATTGAACAGTAA+GGG | - | chr4_2:53177686-53177705 | None:intergenic | 40.0% | |
| AAGGAAGCCATTGAACAGTA+AGG | - | chr4_2:53177687-53177706 | None:intergenic | 40.0% | |
| TTAAAGGAAGAGTTGGAGTG+GGG | - | chr4_2:53177721-53177740 | None:intergenic | 40.0% | |
| GTTAAAGGAAGAGTTGGAGT+GGG | - | chr4_2:53177722-53177741 | None:intergenic | 40.0% | |
| GAGGTAATTGGGTTCTTCAT+CGG | - | chr4_2:53177776-53177795 | None:intergenic | 40.0% | |
| CAGGCATTTCATCAAACAGT+TGG | - | chr4_2:53177917-53177936 | None:intergenic | 40.0% | |
| TATAGGTGGAGATTACTCAG+AGG | + | chr4_2:53177959-53177978 | Msa0606580:intron | 40.0% | |
| ACTCAGAGGATTCTTGTTGA+TGG | + | chr4_2:53177973-53177992 | Msa0606580:CDS | 40.0% | |
| CTCAGAGGATTCTTGTTGAT+GGG | + | chr4_2:53177974-53177993 | Msa0606580:CDS | 40.0% | |
| TCAGAGGATTCTTGTTGATG+GGG | + | chr4_2:53177975-53177994 | Msa0606580:CDS | 40.0% | |
| TGCGAAGACTTGTAATTCAG+AGG | + | chr4_2:53178044-53178063 | Msa0606580:CDS | 40.0% | |
| TGACCCTTCAACCTAAAATC+AGG | - | chr4_2:53178114-53178133 | None:intergenic | 40.0% | |
| TTGAAGGGTCATGAGAAAGA+AGG | + | chr4_2:53178123-53178142 | Msa0606580:CDS | 40.0% | |
| TGAAGGGTCATGAGAAAGAA+GGG | + | chr4_2:53178124-53178143 | Msa0606580:CDS | 40.0% | |
| ! | GTCATGAGAAAGAAGGGTAT+GGG | + | chr4_2:53178130-53178149 | Msa0606580:CDS | 40.0% |
| ATTTGCTTGTGGGATGTGTT+TGG | + | chr4_2:53178210-53178229 | Msa0606580:CDS | 40.0% | |
| ACCATTACCTCTCTTTCATG+GGG | - | chr4_2:53178519-53178538 | None:intergenic | 40.0% | |
| CACCATTACCTCTCTTTCAT+GGG | - | chr4_2:53178520-53178539 | None:intergenic | 40.0% | |
| ACACCATTACCTCTCTTTCA+TGG | - | chr4_2:53178521-53178540 | None:intergenic | 40.0% | |
| TATGAGAACCAACCCAATTG+GGG | + | chr4_2:53178646-53178665 | Msa0606580:intron | 40.0% | |
| TAGCATACAAAGCCCCAATT+GGG | - | chr4_2:53178661-53178680 | None:intergenic | 40.0% | |
| ATAGCATACAAAGCCCCAAT+TGG | - | chr4_2:53178662-53178681 | None:intergenic | 40.0% | |
| ! | AATTGGGGCTTTGTATGCTA+TGG | + | chr4_2:53178661-53178680 | Msa0606580:intron | 40.0% |
| TCATGGTCCAAATTCATTGC+AGG | - | chr4_2:53178698-53178717 | None:intergenic | 40.0% | |
| GCAATGAATTTGGACCATGA+TGG | + | chr4_2:53178698-53178717 | Msa0606580:intron | 40.0% | |
| CCTGGACAGTATGTTCTAAT+AGG | - | chr4_2:53178818-53178837 | None:intergenic | 40.0% | |
| CCTATTAGAACATACTGTCC+AGG | + | chr4_2:53178815-53178834 | Msa0606580:intron | 40.0% | |
| !! | GTTGTATGCTCGTTTTGAAC+AGG | + | chr4_2:53179050-53179069 | Msa0606580:intron | 40.0% |
| CTTTCAGTCCGTATAGTGAA+TGG | + | chr4_2:53179085-53179104 | Msa0606580:CDS | 40.0% | |
| ! | CTTTGATTTACGGAAGCTTG+AGG | + | chr4_2:53179146-53179165 | Msa0606580:CDS | 40.0% |
| TGGCTACTTAGAAAATGCAG+TGG | - | chr4_2:53179174-53179193 | None:intergenic | 40.0% | |
| ! | AATACGTGAGTAAAAGGCAC+TGG | - | chr4_2:53179343-53179362 | None:intergenic | 40.0% |
| ! | GTGCCTTTTACTCACGTATT+TGG | + | chr4_2:53179343-53179362 | Msa0606580:intron | 40.0% |
| !! | CCAAACCATTAGCCTTCTAT+CGG | - | chr4_2:53179450-53179469 | None:intergenic | 40.0% |
| CGATAGAAGGCTAATGGTTT+GGG | + | chr4_2:53179448-53179467 | Msa0606580:CDS | 40.0% | |
| ! | TAATGGTTTGGGACCTTAAC+AGG | + | chr4_2:53179459-53179478 | Msa0606580:CDS | 40.0% |
| TTCATGATGACTCAGGATTG+GGG | + | chr4_2:53179637-53179656 | Msa0606580:intron | 40.0% | |
| TCCATGAGAGAAGAGTAGTT+CGG | - | chr4_2:53179699-53179718 | None:intergenic | 40.0% | |
| !!! | AAATTACCCATGGCTGGTTT+TGG | - | chr4_2:53179757-53179776 | None:intergenic | 40.0% |
| GCTACACTTGAAATTACCCA+TGG | - | chr4_2:53179767-53179786 | None:intergenic | 40.0% | |
| ! | GGTAATTTCAAGTGTAGCTG+AGG | + | chr4_2:53179769-53179788 | Msa0606580:CDS | 40.0% |
| TTCTTTCCATGTCTGGCAAA+TGG | + | chr4_2:53179796-53179815 | Msa0606580:CDS | 40.0% | |
| !! | GCTGAAAGCATCTACAATGA+TGG | + | chr4_2:53179818-53179837 | Msa0606580:CDS | 40.0% |
| ATGGCGATGATGACAACAAT+TGG | + | chr4_2:53179837-53179856 | Msa0606580:CDS | 40.0% | |
| CGATGATGACAACAATTGGA+TGG | + | chr4_2:53179841-53179860 | Msa0606580:CDS | 40.0% | |
| CTAACTAGAAGAAGGCTCAA+AGG | + | chr4_2:53179877-53179896 | Msa0606580:exon | 40.0% | |
| ! | TGTGCTTGTTGAAACAATGG+TGG | + | chr4_2:53179992-53180011 | Msa0606580:three_prime_UTR | 40.0% |
| CACGTTTGATACATCTGTTC+TGG | - | chr4_2:53180054-53180073 | None:intergenic | 40.0% | |
| ! | TCTAGAACAATGCAGGTTGA+AGG | - | chr4_2:53180207-53180226 | None:intergenic | 40.0% |
| ! | CAAGGAATCTAGAACAATGC+AGG | - | chr4_2:53180214-53180233 | None:intergenic | 40.0% |
| AGCCATTGAACAGTAAGGGA+AGG | - | chr4_2:53177682-53177701 | None:intergenic | 45.0% | |
| GGTTAAAGGAAGAGTTGGAG+TGG | - | chr4_2:53177723-53177742 | None:intergenic | 45.0% | |
| GTGGAGGTTAAAGGAAGAGT+TGG | - | chr4_2:53177728-53177747 | None:intergenic | 45.0% | |
| GAGGAGTTTGTGGAGGTTAA+AGG | - | chr4_2:53177737-53177756 | None:intergenic | 45.0% | |
| TCAGCGAGCATGAGGTAATT+GGG | - | chr4_2:53177787-53177806 | None:intergenic | 45.0% | |
| TTCAGCGAGCATGAGGTAAT+TGG | - | chr4_2:53177788-53177807 | None:intergenic | 45.0% | |
| ! | TTGTTGATGGGGAGGTGAAT+AGG | + | chr4_2:53177986-53178005 | Msa0606580:CDS | 45.0% |
| ! | TGTTGATGGGGAGGTGAATA+GGG | + | chr4_2:53177987-53178006 | Msa0606580:CDS | 45.0% |
| GCAACAACATTCGCATTCTG+TGG | - | chr4_2:53178024-53178043 | None:intergenic | 45.0% | |
| ! | TTTTACTAAGGAGAGAGGGG+AGG | + | chr4_2:53178080-53178099 | Msa0606580:intron | 45.0% |
| TTTACTAAGGAGAGAGGGGA+GGG | + | chr4_2:53178081-53178100 | Msa0606580:intron | 45.0% | |
| GGTCATGAGAAAGAAGGGTA+TGG | + | chr4_2:53178129-53178148 | Msa0606580:CDS | 45.0% | |
| GTGTTAGGGACATGAAAGTG+TGG | + | chr4_2:53178380-53178399 | Msa0606580:intron | 45.0% | |
| GTGTGGTTGAAGATGTGTCT+TGG | + | chr4_2:53178397-53178416 | Msa0606580:CDS | 45.0% | |
| ! | GAGAATTTGTTTGGGTCTGG+TGG | + | chr4_2:53178432-53178451 | Msa0606580:CDS | 45.0% |
| ATGGGGTTTGAGTGAATGCT+GGG | - | chr4_2:53178502-53178521 | None:intergenic | 45.0% | |
| ACTCAAACCCCATGAAAGAG+AGG | + | chr4_2:53178509-53178528 | Msa0606580:CDS | 45.0% | |
| ACCCCATGAAAGAGAGGTAA+TGG | + | chr4_2:53178515-53178534 | Msa0606580:intron | 45.0% | |
| ATACAAAGCCCCAATTGGGT+TGG | - | chr4_2:53178657-53178676 | None:intergenic | 45.0% | |
| ATGATTGATGTTTAGCCCCC+CGG | + | chr4_2:53178753-53178772 | Msa0606580:intron | 45.0% | |
| ATCTCAGATTGAGCAACCTC+CGG | - | chr4_2:53178775-53178794 | None:intergenic | 45.0% | |
| AGGAAAAGCCCCCCATTAAT+TGG | - | chr4_2:53178867-53178886 | None:intergenic | 45.0% | |
| ! | GGGGCTTTTCCTGCAAAAAT+GGG | + | chr4_2:53178875-53178894 | Msa0606580:intron | 45.0% |
| ! | GGGCTTTTCCTGCAAAAATG+GGG | + | chr4_2:53178876-53178895 | Msa0606580:intron | 45.0% |
| ! | GGCTTTTCCTGCAAAAATGG+GGG | + | chr4_2:53178877-53178896 | Msa0606580:intron | 45.0% |
| ATAGATGAAGGTCGTACGTG+TGG | - | chr4_2:53179194-53179213 | None:intergenic | 45.0% | |
| ! | GTGTAGAGATGAGGTATTCC+AGG | + | chr4_2:53179379-53179398 | Msa0606580:intron | 45.0% |
| ! | ATGAGGTATTCCAGGTAGAG+TGG | + | chr4_2:53179387-53179406 | Msa0606580:CDS | 45.0% |
| ! | TGAGGTATTCCAGGTAGAGT+GGG | + | chr4_2:53179388-53179407 | Msa0606580:CDS | 45.0% |
| !! | CATCTTCTAGTGCCGATAGA+AGG | + | chr4_2:53179435-53179454 | Msa0606580:CDS | 45.0% |
| !! | TAGTGCCGATAGAAGGCTAA+TGG | + | chr4_2:53179442-53179461 | Msa0606580:CDS | 45.0% |
| CCGATAGAAGGCTAATGGTT+TGG | + | chr4_2:53179447-53179466 | Msa0606580:CDS | 45.0% | |
| ATTGGGGATGAGCTGATAGA+GGG | + | chr4_2:53179653-53179672 | Msa0606580:CDS | 45.0% | |
| CTGATAGAGGGAGATGAAGA+AGG | + | chr4_2:53179665-53179684 | Msa0606580:CDS | 45.0% | |
| ATAGAGGGAGATGAAGAAGG+TGG | + | chr4_2:53179668-53179687 | Msa0606580:CDS | 45.0% | |
| CCATGAGAGAAGAGTAGTTC+GGG | - | chr4_2:53179698-53179717 | None:intergenic | 45.0% | |
| GAACTACTCTTCTCTCATGG+AGG | + | chr4_2:53179698-53179717 | Msa0606580:CDS | 45.0% | |
| TTCTCTCATGGAGGTCACAA+AGG | + | chr4_2:53179707-53179726 | Msa0606580:CDS | 45.0% | |
| ATGGAACCAAAACCAGCCAT+GGG | + | chr4_2:53179748-53179767 | Msa0606580:CDS | 45.0% | |
| CACTTGAAATTACCCATGGC+TGG | - | chr4_2:53179763-53179782 | None:intergenic | 45.0% | |
| TTTCAGCCATTTGCCAGACA+TGG | - | chr4_2:53179805-53179824 | None:intergenic | 45.0% | |
| GACCAGCACTAACTAGAAGA+AGG | + | chr4_2:53179869-53179888 | Msa0606580:exon | 45.0% | |
| ! | AGCCTTCTTCTAGTTAGTGC+TGG | - | chr4_2:53179874-53179893 | None:intergenic | 45.0% |
| ! | GCTTGTTGAAACAATGGTGG+TGG | + | chr4_2:53179995-53180014 | Msa0606580:three_prime_UTR | 45.0% |
| CCAAGTTTCAACAAGCACAG+TGG | - | chr4_2:53180113-53180132 | None:intergenic | 45.0% | |
| ! | CCACTGTGCTTGTTGAAACT+TGG | + | chr4_2:53180110-53180129 | Msa0606580:three_prime_UTR | 45.0% |
| ! | ATGCAGGTTGAAGGATTCAG+TGG | - | chr4_2:53180198-53180217 | None:intergenic | 45.0% |
| CGAAACCGAAAACGAAGCAG+AGG | + | chr4_2:53177579-53177598 | Msa0606580:CDS | 50.0% | |
| GGCCTTCCCTTACTGTTCAA+TGG | + | chr4_2:53177677-53177696 | Msa0606580:CDS | 50.0% | |
| ! | TTCTTCATCGGAAGTGTGGG+TGG | - | chr4_2:53177764-53177783 | None:intergenic | 50.0% |
| ! | GGGTTCTTCATCGGAAGTGT+GGG | - | chr4_2:53177767-53177786 | None:intergenic | 50.0% |
| TGGGTTCTTCATCGGAAGTG+TGG | - | chr4_2:53177768-53177787 | None:intergenic | 50.0% | |
| TTCAGGATCTGCAGCGATGA+CGG | - | chr4_2:53177839-53177858 | None:intergenic | 50.0% | |
| ! | GAGGATTCTTGTTGATGGGG+AGG | + | chr4_2:53177978-53177997 | Msa0606580:CDS | 50.0% |
| ! | AAGAAGGGTATGGGCTGTCT+TGG | + | chr4_2:53178139-53178158 | Msa0606580:CDS | 50.0% |
| TGGTGGAGATGACTGCAAGT+TGG | + | chr4_2:53178449-53178468 | Msa0606580:CDS | 50.0% | |
| CATGGGGTTTGAGTGAATGC+TGG | - | chr4_2:53178503-53178522 | None:intergenic | 50.0% | |
| TCTCAGATTGAGCAACCTCC+GGG | - | chr4_2:53178774-53178793 | None:intergenic | 50.0% | |
| GTCCAGGAGAAACTCACCAT+CGG | + | chr4_2:53178831-53178850 | Msa0606580:intron | 50.0% | |
| TTCCGATGGTGAGTTTCTCC+TGG | - | chr4_2:53178836-53178855 | None:intergenic | 50.0% | |
| ! | GGGGGCTTTTCCTGCAAAAA+TGG | + | chr4_2:53178874-53178893 | Msa0606580:intron | 50.0% |
| !! | CTATTGGCCCCCATTTTTGC+AGG | - | chr4_2:53178887-53178906 | None:intergenic | 50.0% |
| GCATCTTCAGACACCGACAT+CGG | + | chr4_2:53179120-53179139 | Msa0606580:CDS | 50.0% | |
| GATTGGGGATGAGCTGATAG+AGG | + | chr4_2:53179652-53179671 | Msa0606580:CDS | 50.0% | |
| TGAGAGAAGAGTAGTTCGGG+AGG | - | chr4_2:53179695-53179714 | None:intergenic | 50.0% | |
| CCCGAACTACTCTTCTCTCA+TGG | + | chr4_2:53179695-53179714 | Msa0606580:CDS | 50.0% | |
| CATGGAACCAAAACCAGCCA+TGG | + | chr4_2:53179747-53179766 | Msa0606580:CDS | 50.0% | |
| TCATCTCACACCCTCTCGCA+TGG | + | chr4_2:53177656-53177675 | Msa0606580:CDS | 55.0% | |
| TAAGGGAAGGCCATGCGAGA+GGG | - | chr4_2:53177669-53177688 | None:intergenic | 55.0% | |
| GAAGAGTTGGAGTGGGGTTG+AGG | - | chr4_2:53177715-53177734 | None:intergenic | 55.0% | |
| ! | GAGTGGATTCAGCGAGCATG+AGG | - | chr4_2:53177795-53177814 | None:intergenic | 55.0% |
| ! | ACGGGTTGAGATGGGTTTCC+GGG | - | chr4_2:53177820-53177839 | None:intergenic | 55.0% |
| !! | GACGGGTTGAGATGGGTTTC+CGG | - | chr4_2:53177821-53177840 | None:intergenic | 55.0% |
| !! | CAGCGATGACGGGTTGAGAT+GGG | - | chr4_2:53177828-53177847 | None:intergenic | 55.0% |
| TCAGGATCTGCAGCGATGAC+GGG | - | chr4_2:53177838-53177857 | None:intergenic | 55.0% | |
| ATGGGGAGGTGAATAGGGCT+CGG | + | chr4_2:53177992-53178011 | Msa0606580:CDS | 55.0% | |
| ATTGATGTTTAGCCCCCCGG+AGG | + | chr4_2:53178756-53178775 | Msa0606580:intron | 55.0% | |
| TCAGATTGAGCAACCTCCGG+GGG | - | chr4_2:53178772-53178791 | None:intergenic | 55.0% | |
| CTCAGATTGAGCAACCTCCG+GGG | - | chr4_2:53178773-53178792 | None:intergenic | 55.0% | |
| GGTTAGGATCCCACTCTACC+TGG | - | chr4_2:53179400-53179419 | None:intergenic | 55.0% | |
| AGAGTGGGATCCTAACCACG+AGG | + | chr4_2:53179403-53179422 | Msa0606580:CDS | 55.0% | |
| GAGTGGGATCCTAACCACGA+GGG | + | chr4_2:53179404-53179423 | Msa0606580:CDS | 55.0% | |
| ! | TCCTAACCACGAGGGAGTGT+TGG | + | chr4_2:53179412-53179431 | Msa0606580:CDS | 55.0% |
| AAGATGCCAACACTCCCTCG+TGG | - | chr4_2:53179421-53179440 | None:intergenic | 55.0% | |
| GTAAGGGAAGGCCATGCGAG+AGG | - | chr4_2:53177670-53177689 | None:intergenic | 60.0% | |
| GAGTGGGGTTGAGGAGGTGA+AGG | - | chr4_2:53177706-53177725 | None:intergenic | 60.0% | |
| GAGTTGGAGTGGGGTTGAGG+AGG | - | chr4_2:53177712-53177731 | None:intergenic | 60.0% | |
| TGGCGAGGAGGAGTTTGTGG+AGG | - | chr4_2:53177744-53177763 | None:intergenic | 60.0% | |
| CTCGCTGAATCCACTCTCCC+CGG | + | chr4_2:53177799-53177818 | Msa0606580:CDS | 60.0% | |
| ! | AGATGGGTTTCCGGGGAGAG+TGG | - | chr4_2:53177812-53177831 | None:intergenic | 60.0% |
| ! | CGGGTTGAGATGGGTTTCCG+GGG | - | chr4_2:53177819-53177838 | None:intergenic | 60.0% |
| !! | GCAGCGATGACGGGTTGAGA+TGG | - | chr4_2:53177829-53177848 | None:intergenic | 60.0% |
| TGGGGAGGTGAATAGGGCTC+GGG | + | chr4_2:53177993-53178012 | Msa0606580:CDS | 60.0% | |
| ! | GGGTATGGGCTGTCTTGGAG+TGG | + | chr4_2:53178144-53178163 | Msa0606580:CDS | 60.0% |
| CAGATTGAGCAACCTCCGGG+GGG | - | chr4_2:53178771-53178790 | None:intergenic | 60.0% | |
| GCCAACACTCCCTCGTGGTT+AGG | - | chr4_2:53179416-53179435 | None:intergenic | 60.0% | |
| GGGTGGCGAGGAGGAGTTTG+TGG | - | chr4_2:53177747-53177766 | None:intergenic | 65.0% | |
| ! | CATCGGAAGTGTGGGTGGCG+AGG | - | chr4_2:53177759-53177778 | None:intergenic | 65.0% |
| ! | CGGAAGTGTGGGTGGCGAGG+AGG | - | chr4_2:53177756-53177775 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 53177565 | 53180247 | 53177565 | ID=Msa0606580;Name=Msa0606580 |
| chr4_2 | mRNA | 53177565 | 53180247 | 53177565 | ID=Msa0606580-mRNA-1;Parent=Msa0606580;Name=Msa0606580-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.71|0.5|1|0.57|0.5|8|367|394 |
| chr4_2 | exon | 53177565 | 53177618 | 53177565 | ID=Msa0606580-mRNA-1:exon:13003;Parent=Msa0606580-mRNA-1 |
| chr4_2 | exon | 53177628 | 53177876 | 53177628 | ID=Msa0606580-mRNA-1:exon:13004;Parent=Msa0606580-mRNA-1 |
| chr4_2 | exon | 53177964 | 53178065 | 53177964 | ID=Msa0606580-mRNA-1:exon:13005;Parent=Msa0606580-mRNA-1 |
| chr4_2 | exon | 53178090 | 53178275 | 53178090 | ID=Msa0606580-mRNA-1:exon:13006;Parent=Msa0606580-mRNA-1 |
| chr4_2 | exon | 53178387 | 53178530 | 53178387 | ID=Msa0606580-mRNA-1:exon:13007;Parent=Msa0606580-mRNA-1 |
| chr4_2 | exon | 53179072 | 53179196 | 53179072 | ID=Msa0606580-mRNA-1:exon:13008;Parent=Msa0606580-mRNA-1 |
| chr4_2 | exon | 53179385 | 53179480 | 53179385 | ID=Msa0606580-mRNA-1:exon:13009;Parent=Msa0606580-mRNA-1 |
| chr4_2 | exon | 53179652 | 53180247 | 53179652 | ID=Msa0606580-mRNA-1:exon:13010;Parent=Msa0606580-mRNA-1 |
| chr4_2 | CDS | 53177565 | 53177618 | 53177565 | ID=Msa0606580-mRNA-1:cds;Parent=Msa0606580-mRNA-1 |
| chr4_2 | CDS | 53177628 | 53177876 | 53177628 | ID=Msa0606580-mRNA-1:cds;Parent=Msa0606580-mRNA-1 |
| chr4_2 | CDS | 53177964 | 53178065 | 53177964 | ID=Msa0606580-mRNA-1:cds;Parent=Msa0606580-mRNA-1 |
| chr4_2 | CDS | 53178090 | 53178275 | 53178090 | ID=Msa0606580-mRNA-1:cds;Parent=Msa0606580-mRNA-1 |
| chr4_2 | CDS | 53178387 | 53178530 | 53178387 | ID=Msa0606580-mRNA-1:cds;Parent=Msa0606580-mRNA-1 |
| chr4_2 | CDS | 53179072 | 53179196 | 53179072 | ID=Msa0606580-mRNA-1:cds;Parent=Msa0606580-mRNA-1 |
| chr4_2 | CDS | 53179385 | 53179480 | 53179385 | ID=Msa0606580-mRNA-1:cds;Parent=Msa0606580-mRNA-1 |
| chr4_2 | CDS | 53179652 | 53179880 | 53179652 | ID=Msa0606580-mRNA-1:cds;Parent=Msa0606580-mRNA-1 |
| chr4_2 | three_prime_UTR | 53179881 | 53180247 | 53179881 | ID=Msa0606580-mRNA-1:three_prime_utr;Parent=Msa0606580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
