Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647280 | XP_003607178.1 | 97.778 | 405 | 9 | 0 | 1 | 405 | 1 | 405 | 0.0 | 817 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647280 | sp|O22469|MSI3_ARATH | 63.342 | 401 | 136 | 5 | 1 | 391 | 1 | 400 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647280 | G7JMD2 | 97.778 | 405 | 9 | 0 | 1 | 405 | 1 | 405 | 0.0 | 817 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005020 | Msa0647280 | 0.837499 | 5.014561e-57 | -8.615850e-47 |
| Msa0035270 | Msa0647280 | 0.813749 | 2.187000e-51 | -8.615850e-47 |
| Msa0035340 | Msa0647280 | 0.826987 | 2.006327e-54 | -8.615850e-47 |
| Msa0035380 | Msa0647280 | 0.814910 | 1.211012e-51 | -8.615850e-47 |
| Msa0053070 | Msa0647280 | 0.844305 | 8.211121e-59 | -8.615850e-47 |
| Msa0056180 | Msa0647280 | 0.810357 | 1.200022e-50 | -8.615850e-47 |
| Msa0065020 | Msa0647280 | 0.808832 | 2.550946e-50 | -8.615850e-47 |
| Msa0074030 | Msa0647280 | 0.800930 | 1.143698e-48 | -8.615850e-47 |
| Msa0098410 | Msa0647280 | 0.834171 | 3.496493e-56 | -8.615850e-47 |
| Msa0606580 | Msa0647280 | 0.985224 | 6.607420e-163 | -8.615850e-47 |
| Msa0647280 | Msa0658640 | 0.806277 | 8.894358e-50 | -8.615850e-47 |
| Msa0647280 | Msa0686800 | 0.997752 | 1.735427e-248 | -8.615850e-47 |
| Msa0647280 | Msa0703600 | 0.802040 | 6.773031e-49 | -8.615850e-47 |
| Msa0647280 | Msa0709200 | 0.805477 | 1.310239e-49 | -8.615850e-47 |
| Msa0647280 | Msa0709440 | 0.816489 | 5.387086e-52 | -8.615850e-47 |
| Msa0647280 | Msa0735780 | 0.806792 | 6.924947e-50 | -8.615850e-47 |
| Msa0647280 | Msa0747740 | 0.829987 | 3.784361e-55 | -8.615850e-47 |
| Msa0647280 | Msa0780910 | 0.802955 | 4.387346e-49 | -8.615850e-47 |
| Msa0647280 | Msa0838240 | 0.805227 | 1.477985e-49 | -8.615850e-47 |
| Msa0647280 | Msa0881290 | 0.815613 | 8.451504e-52 | -8.615850e-47 |
| Msa0647280 | Msa1013350 | 0.801643 | 8.173583e-49 | -8.615850e-47 |
| Msa0647280 | Msa1024180 | 0.856384 | 3.336448e-62 | -8.615850e-47 |
| Msa0647280 | Msa1078150 | 0.820230 | 7.656020e-53 | -8.615850e-47 |
| Msa0647280 | Msa1078870 | 0.804215 | 2.404139e-49 | -8.615850e-47 |
| Msa0647280 | Msa1084530 | 0.810543 | 1.093808e-50 | -8.615850e-47 |
| Msa0647280 | Msa1094010 | 0.821381 | 4.162502e-53 | -8.615850e-47 |
| Msa0647280 | Msa1125820 | 0.815712 | 8.031654e-52 | -8.615850e-47 |
| Msa0647280 | Msa1125990 | 0.817980 | 2.489073e-52 | -8.615850e-47 |
| Msa0647280 | Msa1132530 | 0.801132 | 1.040148e-48 | -8.615850e-47 |
| Msa0647280 | Msa1171290 | 0.810712 | 1.005559e-50 | -8.615850e-47 |
| Msa0647280 | Msa1174780 | 0.831282 | 1.823598e-55 | -8.615850e-47 |
| Msa0647280 | Msa1217050 | 0.814152 | 1.781899e-51 | -8.615850e-47 |
| Msa0647280 | Msa1217210 | 0.801278 | 9.710561e-49 | -8.615850e-47 |
| Msa0647280 | Msa1226520 | 0.800548 | 1.368659e-48 | -8.615850e-47 |
| Msa0647280 | Msa1244240 | 0.800228 | 1.589969e-48 | -8.615850e-47 |
| Msa0647280 | Msa1262590 | 0.813418 | 2.585298e-51 | -8.615850e-47 |
| Msa0647280 | Msa1276830 | 0.813068 | 3.086660e-51 | -8.615850e-47 |
| Msa0647280 | Msa1314940 | 0.804527 | 2.069568e-49 | -8.615850e-47 |
| Msa0647280 | Msa1343260 | 0.802628 | 5.126278e-49 | -8.615850e-47 |
| Msa0647280 | Msa1414170 | 0.817652 | 2.950977e-52 | -8.615850e-47 |
| Msa0647280 | Msa1421570 | 0.840429 | 8.742672e-58 | -8.615850e-47 |
| Msa0647280 | Msa1426120 | 0.801341 | 9.426226e-49 | -8.615850e-47 |
| Msa0647280 | Msa1440880 | 0.809920 | 1.490806e-50 | -8.615850e-47 |
| Msa0647280 | Msa1462490 | 0.806571 | 7.709405e-50 | -8.615850e-47 |
| Msa0146650 | Msa0647280 | 0.801115 | 1.048521e-48 | -8.615850e-47 |
| Msa0189700 | Msa0647280 | 0.815757 | 7.851313e-52 | -8.615850e-47 |
| Msa0202290 | Msa0647280 | 0.805503 | 1.293434e-49 | -8.615850e-47 |
| Msa0232010 | Msa0647280 | 0.814170 | 1.765999e-51 | -8.615850e-47 |
| Msa0232080 | Msa0647280 | 0.813070 | 3.082736e-51 | -8.615850e-47 |
| Msa0367520 | Msa0647280 | 0.812285 | 4.578559e-51 | -8.615850e-47 |
| Msa0422050 | Msa0647280 | 0.815161 | 1.065406e-51 | -8.615850e-47 |
| Msa0460780 | Msa0647280 | 0.811140 | 8.125576e-51 | -8.615850e-47 |
| Msa0481890 | Msa0647280 | 0.816010 | 6.892779e-52 | -8.615850e-47 |
| Msa0283800 | Msa0647280 | 0.809070 | 2.268990e-50 | -8.615850e-47 |
| Msa0321920 | Msa0647280 | 0.815355 | 9.647008e-52 | -8.615850e-47 |
| Msa0532050 | Msa0647280 | 0.854372 | 1.286578e-61 | -8.615850e-47 |
| Msa0567170 | Msa0647280 | 0.813262 | 2.798196e-51 | -8.615850e-47 |
| Msa0591170 | Msa0647280 | 0.815829 | 7.565150e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647280 | MtrunA17_Chr4g0036951 | 97.778 | 405 | 9 | 0 | 1 | 405 | 1 | 405 | 0.0 | 817 |
| Msa0647280 | MtrunA17_Chr4g0052291 | 53.671 | 395 | 166 | 5 | 17 | 395 | 21 | 414 | 4.99e-144 | 416 |
| Msa0647280 | MtrunA17_Chr2g0299271 | 29.742 | 427 | 255 | 9 | 11 | 395 | 56 | 479 | 1.83e-57 | 196 |
| Msa0647280 | MtrunA17_Chr2g0330271 | 29.128 | 436 | 252 | 11 | 13 | 395 | 17 | 448 | 5.78e-49 | 172 |
| Msa0647280 | MtrunA17_Chr8g0377441 | 27.852 | 298 | 182 | 7 | 109 | 377 | 157 | 450 | 3.48e-28 | 115 |
| Msa0647280 | MtrunA17_Chr5g0406931 | 27.632 | 304 | 180 | 12 | 107 | 377 | 142 | 438 | 9.63e-23 | 99.8 |
| Msa0647280 | MtrunA17_Chr2g0283891 | 26.891 | 238 | 164 | 4 | 99 | 336 | 47 | 274 | 2.09e-20 | 91.3 |
| Msa0647280 | MtrunA17_Chr6g0448921 | 32.039 | 206 | 121 | 9 | 153 | 354 | 50 | 240 | 3.46e-15 | 77.8 |
| Msa0647280 | MtrunA17_Chr5g0401661 | 26.556 | 241 | 129 | 8 | 158 | 355 | 433 | 668 | 3.22e-13 | 71.6 |
| Msa0647280 | MtrunA17_Chr3g0143791 | 26.131 | 199 | 139 | 5 | 183 | 377 | 141 | 335 | 2.99e-12 | 67.4 |
| Msa0647280 | MtrunA17_Chr4g0053651 | 23.950 | 238 | 147 | 9 | 158 | 387 | 326 | 537 | 1.16e-11 | 66.6 |
| Msa0647280 | MtrunA17_Chr3g0093681 | 27.053 | 207 | 127 | 7 | 177 | 383 | 370 | 552 | 1.26e-11 | 66.2 |
| Msa0647280 | MtrunA17_Chr7g0253861 | 26.364 | 220 | 145 | 8 | 111 | 328 | 49 | 253 | 1.49e-11 | 65.5 |
| Msa0647280 | MtrunA17_Chr5g0438901 | 26.190 | 210 | 140 | 7 | 125 | 330 | 383 | 581 | 1.59e-11 | 66.2 |
| Msa0647280 | MtrunA17_Chr5g0401671 | 25.116 | 215 | 114 | 7 | 158 | 329 | 343 | 553 | 2.91e-11 | 65.1 |
| Msa0647280 | MtrunA17_Chr2g0281451 | 29.897 | 194 | 116 | 9 | 178 | 363 | 73 | 254 | 8.53e-11 | 63.9 |
| Msa0647280 | MtrunA17_Chr8g0352821 | 26.906 | 223 | 133 | 9 | 178 | 393 | 282 | 481 | 9.21e-11 | 63.9 |
| Msa0647280 | MtrunA17_Chr5g0396821 | 28.221 | 163 | 108 | 3 | 168 | 330 | 776 | 929 | 9.30e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647280 | AT4G35050.1 | 63.342 | 401 | 136 | 5 | 1 | 391 | 1 | 400 | 0.0 | 534 |
| Msa0647280 | AT2G16780.1 | 63.524 | 403 | 139 | 4 | 1 | 395 | 1 | 403 | 0.0 | 531 |
| Msa0647280 | AT5G58230.1 | 53.133 | 399 | 170 | 4 | 13 | 395 | 17 | 414 | 1.26e-148 | 428 |
| Msa0647280 | AT2G19520.1 | 29.792 | 433 | 252 | 8 | 6 | 391 | 57 | 484 | 9.70e-57 | 194 |
| Msa0647280 | AT4G29730.1 | 27.816 | 435 | 256 | 9 | 6 | 395 | 47 | 468 | 8.30e-51 | 178 |
| Msa0647280 | AT4G29730.3 | 27.763 | 389 | 228 | 10 | 6 | 355 | 47 | 421 | 3.40e-41 | 151 |
| Msa0647280 | AT4G29730.2 | 27.763 | 389 | 228 | 10 | 6 | 355 | 47 | 421 | 3.40e-41 | 151 |
| Msa0647280 | AT2G19540.1 | 30.844 | 308 | 173 | 11 | 103 | 377 | 149 | 449 | 3.71e-32 | 127 |
| Msa0647280 | AT1G29260.1 | 26.286 | 175 | 123 | 1 | 153 | 327 | 97 | 265 | 1.74e-16 | 80.1 |
| Msa0647280 | AT5G08390.1 | 27.751 | 209 | 127 | 6 | 176 | 384 | 72 | 256 | 7.30e-15 | 77.0 |
| Msa0647280 | AT5G23430.3 | 27.536 | 207 | 126 | 6 | 178 | 384 | 74 | 256 | 5.94e-14 | 74.3 |
| Msa0647280 | AT5G23430.2 | 27.536 | 207 | 126 | 6 | 178 | 384 | 74 | 256 | 5.94e-14 | 74.3 |
| Msa0647280 | AT5G23430.1 | 27.536 | 207 | 126 | 6 | 178 | 384 | 74 | 256 | 6.27e-14 | 74.3 |
| Msa0647280 | AT1G20540.1 | 27.545 | 167 | 111 | 4 | 218 | 378 | 175 | 337 | 4.40e-13 | 70.5 |
| Msa0647280 | AT3G63460.3 | 24.206 | 252 | 161 | 7 | 158 | 399 | 118 | 349 | 6.09e-13 | 71.2 |
| Msa0647280 | AT3G63460.2 | 24.206 | 252 | 161 | 7 | 158 | 399 | 118 | 349 | 6.61e-13 | 71.2 |
| Msa0647280 | AT3G63460.1 | 24.206 | 252 | 161 | 7 | 158 | 399 | 118 | 349 | 6.85e-13 | 71.2 |
| Msa0647280 | AT5G67320.1 | 25.210 | 238 | 144 | 9 | 158 | 387 | 361 | 572 | 8.01e-13 | 70.5 |
| Msa0647280 | AT2G32950.1 | 27.461 | 193 | 127 | 5 | 139 | 328 | 395 | 577 | 3.03e-12 | 68.9 |
| Msa0647280 | AT4G11110.1 | 29.268 | 164 | 107 | 3 | 167 | 330 | 777 | 931 | 3.31e-12 | 68.9 |
| Msa0647280 | AT2G32950.2 | 27.461 | 193 | 127 | 5 | 139 | 328 | 282 | 464 | 3.39e-12 | 68.6 |
| Msa0647280 | AT4G35370.1 | 22.422 | 223 | 144 | 3 | 172 | 386 | 177 | 378 | 4.39e-12 | 67.8 |
| Msa0647280 | AT5G13480.4 | 31.544 | 149 | 93 | 4 | 178 | 326 | 210 | 349 | 1.47e-11 | 66.6 |
| Msa0647280 | AT5G13480.3 | 31.544 | 149 | 93 | 4 | 178 | 326 | 210 | 349 | 1.48e-11 | 66.6 |
| Msa0647280 | AT5G13480.1 | 31.544 | 149 | 93 | 4 | 178 | 326 | 222 | 361 | 1.59e-11 | 66.6 |
| Msa0647280 | AT5G13480.2 | 31.544 | 149 | 93 | 4 | 178 | 326 | 233 | 372 | 1.61e-11 | 66.6 |
| Msa0647280 | AT1G61210.3 | 29.801 | 151 | 96 | 5 | 178 | 328 | 73 | 213 | 4.68e-11 | 65.5 |
| Msa0647280 | AT1G61210.2 | 29.801 | 151 | 96 | 5 | 178 | 328 | 73 | 213 | 4.83e-11 | 65.5 |
| Msa0647280 | AT1G61210.1 | 29.801 | 151 | 96 | 5 | 178 | 328 | 73 | 213 | 4.92e-11 | 65.5 |
| Msa0647280 | AT1G11160.2 | 29.801 | 151 | 96 | 6 | 178 | 328 | 73 | 213 | 8.38e-11 | 64.7 |
| Msa0647280 | AT1G11160.1 | 29.801 | 151 | 96 | 6 | 178 | 328 | 73 | 213 | 8.61e-11 | 64.3 |
| Msa0647280 | AT1G11160.3 | 29.801 | 151 | 96 | 6 | 178 | 328 | 31 | 171 | 9.04e-11 | 64.3 |
| Msa0647280 | AT1G11160.4 | 29.801 | 151 | 96 | 6 | 178 | 328 | 73 | 213 | 9.68e-11 | 64.3 |
Find 146 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACTGCAAGTTGGTAATT+TGG | 0.200192 | 4_3:+53257269 | Msa0647280:CDS |
| GAGGAGTTTGTGGAGGTTAA+AGG | 0.205640 | 4_3:-53256546 | None:intergenic |
| GACGGGTTGAGATGGGTTTC+CGG | 0.242362 | 4_3:-53256630 | None:intergenic |
| TTCAGCGAGCATGAGGTAAT+TGG | 0.242797 | 4_3:-53256597 | None:intergenic |
| AAATTACCCATGGCTGGTTT+TGG | 0.254020 | 4_3:-53258598 | None:intergenic |
| TAATGGTTTGGGACCTTAAC+AGG | 0.280289 | 4_3:+53258303 | Msa0647280:CDS |
| TTGCATAATGAGAATTTGTT+TGG | 0.282089 | 4_3:+53257235 | Msa0647280:CDS |
| ACGGGTTGAGATGGGTTTCC+GGG | 0.287427 | 4_3:-53256629 | None:intergenic |
| ATGAACAAAATCTCAGAAAT+TGG | 0.291231 | 4_3:+53258986 | Msa0647280:three_prime_UTR |
| CACGTTTGATACATCTGTTC+TGG | 0.300052 | 4_3:-53258895 | None:intergenic |
| TGACTGCAAGTTGGTAATTT+GGG | 0.320876 | 4_3:+53257270 | Msa0647280:CDS |
| GAAGAGTTGGAGTGGGGTTG+AGG | 0.330665 | 4_3:-53256524 | None:intergenic |
| CATGGGGTTTGAGTGAATGC+TGG | 0.337025 | 4_3:-53257312 | None:intergenic |
| GCCAAAATCCATTCACTATA+CGG | 0.342837 | 4_3:-53257937 | None:intergenic |
| GGCCTTCCCTTACTGTTCAA+TGG | 0.344219 | 4_3:+53256489 | Msa0647280:CDS |
| TGTTGATGGGGAGGTGAATA+GGG | 0.344389 | 4_3:+53256799 | Msa0647280:CDS |
| ACATCGGTCTCTTTGATTTA+CGG | 0.356527 | 4_3:+53257980 | Msa0647280:CDS |
| TTGTTGATGGGGAGGTGAAT+AGG | 0.360369 | 4_3:+53256798 | Msa0647280:CDS |
| TCCGTATAGTGAATGGATTT+TGG | 0.364343 | 4_3:+53257936 | Msa0647280:CDS |
| CTGATAGAAGGCTAATGGTT+TGG | 0.371708 | 4_3:+53258291 | Msa0647280:CDS |
| CACATATAACAACATAAAAC+TGG | 0.380090 | 4_3:-53258806 | None:intergenic |
| CAAGAAGCATTGGCGCGAAT+AGG | 0.380633 | 4_3:+53256328 | None:intergenic |
| ACACCATTACCTCTCTTTCA+TGG | 0.392547 | 4_3:-53257330 | None:intergenic |
| GGGTGGCGAGGAGGAGTTTG+TGG | 0.394964 | 4_3:-53256556 | None:intergenic |
| CACCATTACCTCTCTTTCAT+GGG | 0.396455 | 4_3:-53257329 | None:intergenic |
| CTTTCAGTCCGTATAGTGAA+TGG | 0.398232 | 4_3:+53257929 | Msa0647280:CDS |
| AGGATAATTCTTTCCATGTC+TGG | 0.402026 | 4_3:+53258633 | Msa0647280:CDS |
| CCATGAGAGAAGAGTAGTTC+GGG | 0.404136 | 4_3:-53258539 | None:intergenic |
| AAGAAGCATTGGCGCGAATA+GGG | 0.415403 | 4_3:+53256329 | None:intergenic |
| TGATAGAAGGCTAATGGTTT+GGG | 0.415888 | 4_3:+53258292 | Msa0647280:CDS |
| TATCAAACGTGAAAAGGTAT+TGG | 0.417760 | 4_3:+53258907 | Msa0647280:three_prime_UTR |
| ACTCAGAGGATTCTTGTTGA+TGG | 0.422181 | 4_3:+53256785 | Msa0647280:CDS |
| TAGTGCTGATAGAAGGCTAA+TGG | 0.425058 | 4_3:+53258286 | Msa0647280:CDS |
| TGCATAATGAGAATTTGTTT+GGG | 0.426082 | 4_3:+53257236 | Msa0647280:CDS |
| CTCAGAGGATTCTTGTTGAT+GGG | 0.427906 | 4_3:+53256786 | Msa0647280:CDS |
| GTGTAGAGATGAGGTATTCC+AGG | 0.429704 | 4_3:+53258223 | Msa0647280:intron |
| AGCCTTCTTCTAGTTAGTGC+TGG | 0.431392 | 4_3:-53258715 | None:intergenic |
| TTCTTTCCATGTCTGGCAAA+TGG | 0.431405 | 4_3:+53258640 | Msa0647280:CDS |
| ATTTGCTTGTGGGATGTGTT+TGG | 0.433764 | 4_3:+53257022 | Msa0647280:CDS |
| AATGAGAATTTGTTTGGGTC+TGG | 0.440769 | 4_3:+53257241 | Msa0647280:CDS |
| TTCAGGATCTGCAGCGATGA+CGG | 0.441099 | 4_3:-53256648 | None:intergenic |
| CATCTTCTAGTGCTGATAGA+AGG | 0.442876 | 4_3:+53258279 | Msa0647280:CDS |
| CACTTGAAATTACCCATGGC+TGG | 0.444884 | 4_3:-53258604 | None:intergenic |
| TCAGCGAGCATGAGGTAATT+GGG | 0.453601 | 4_3:-53256596 | None:intergenic |
| AAGAAGGGTATGGGCTGTCT+TGG | 0.455286 | 4_3:+53256951 | Msa0647280:CDS |
| TGACCCTTCAACCTAAAATC+AGG | 0.455708 | 4_3:-53256923 | None:intergenic |
| TTGAAGAAGAATTCTCCGTT+TGG | 0.456868 | 4_3:+53256414 | Msa0647280:CDS |
| TGATGCTGTTCATGTTTATG+AGG | 0.456896 | 4_3:+53257066 | Msa0647280:CDS |
| CTGTCTAAATCATGGTGCTT+GGG | 0.461163 | 4_3:-53259079 | None:intergenic |
| AGTTGGTAATTTGGGATTTG+CGG | 0.462658 | 4_3:+53257278 | Msa0647280:CDS |
| GTGGAGGTTAAAGGAAGAGT+TGG | 0.463186 | 4_3:-53256537 | None:intergenic |
| ATGGCGATGATGACAACAAT+TGG | 0.467987 | 4_3:+53258681 | Msa0647280:CDS |
| ATGGGGAGGTGAATAGGGCT+CGG | 0.471067 | 4_3:+53256804 | Msa0647280:CDS |
| GAGTGGGGTTGAGGAGGTGA+AGG | 0.476171 | 4_3:-53256515 | None:intergenic |
| CAGATGTATCAAACGTGAAA+AGG | 0.476564 | 4_3:+53258901 | Msa0647280:three_prime_UTR |
| CTGATAGAGGGAGATGAAGA+AGG | 0.477552 | 4_3:+53258509 | Msa0647280:CDS |
| TCCATGAGAGAAGAGTAGTT+CGG | 0.477596 | 4_3:-53258540 | None:intergenic |
| GGTTAGGATCCCACTCTACC+TGG | 0.480679 | 4_3:-53258241 | None:intergenic |
| TTTACTAAGGAGAGAGGGGA+GGG | 0.481005 | 4_3:+53256893 | Msa0647280:CDS |
| GTCAACACTCCCTCGTGGTT+AGG | 0.483885 | 4_3:-53258257 | None:intergenic |
| ATGAAGAGATCGTAGAGAAG+AGG | 0.487047 | 4_3:-53256449 | None:intergenic |
| TGAAGGGTCATGAGAAAGAA+GGG | 0.487057 | 4_3:+53256936 | Msa0647280:CDS |
| GATTGGGGATGAGCTGATAG+AGG | 0.487572 | 4_3:+53258496 | Msa0647280:CDS |
| TCAGGATCTGCAGCGATGAC+GGG | 0.487640 | 4_3:-53256647 | None:intergenic |
| CAGCGATGACGGGTTGAGAT+GGG | 0.493487 | 4_3:-53256637 | None:intergenic |
| GAGTTGGAGTGGGGTTGAGG+AGG | 0.500046 | 4_3:-53256521 | None:intergenic |
| TGGGTTCTTCATCGGAAGTG+TGG | 0.501819 | 4_3:-53256577 | None:intergenic |
| ATGGGGTTTGAGTGAATGCT+GGG | 0.505125 | 4_3:-53257311 | None:intergenic |
| CCCGAACTACTCTTCTCTCA+TGG | 0.505384 | 4_3:+53258539 | Msa0647280:CDS |
| TTGAAGGGTCATGAGAAAGA+AGG | 0.507504 | 4_3:+53256935 | Msa0647280:CDS |
| GCAGCGATGACGGGTTGAGA+TGG | 0.508458 | 4_3:-53256638 | None:intergenic |
| TGATCATAAGATTTGCTTGT+GGG | 0.509495 | 4_3:+53257012 | Msa0647280:CDS |
| CCTGTCTAAATCATGGTGCT+TGG | 0.510500 | 4_3:-53259080 | None:intergenic |
| GAGGTAATTGGGTTCTTCAT+CGG | 0.512602 | 4_3:-53256585 | None:intergenic |
| GGTCATGAGAAAGAAGGGTA+TGG | 0.513903 | 4_3:+53256941 | Msa0647280:CDS |
| TCTAGAACAATGCAGGTTGA+AGG | 0.521112 | 4_3:-53259048 | None:intergenic |
| AAGGAAGCCATTGAACAGTA+AGG | 0.522364 | 4_3:-53256496 | None:intergenic |
| CATGGAACCAAAACCAGCCA+TGG | 0.522424 | 4_3:+53258591 | Msa0647280:CDS |
| TGAAAACCCTATTCTTCCAA+AGG | 0.526040 | 4_3:+53256667 | Msa0647280:CDS |
| CTCGCTGAATCCACTCTCCC+CGG | 0.528576 | 4_3:+53256611 | Msa0647280:CDS |
| ATGAGGTATTCCAGGTAGAG+TGG | 0.529343 | 4_3:+53258231 | Msa0647280:CDS |
| TTTCAGCCATTTGCCAGACA+TGG | 0.531242 | 4_3:-53258646 | None:intergenic |
| AGATGGGTTTCCGGGGAGAG+TGG | 0.533865 | 4_3:-53256621 | None:intergenic |
| GAGAATTTGTTTGGGTCTGG+TGG | 0.535452 | 4_3:+53257244 | Msa0647280:CDS |
| AGGAGTGTTTCTCTTCCAAA+CGG | 0.545132 | 4_3:-53256429 | None:intergenic |
| GGGTATGGGCTGTCTTGGAG+TGG | 0.547685 | 4_3:+53256956 | Msa0647280:CDS |
| TCATCTCACACCCTCTCGCA+TGG | 0.548562 | 4_3:+53256468 | Msa0647280:CDS |
| TTCTCTCATGGAGGTCACAA+AGG | 0.553409 | 4_3:+53258551 | Msa0647280:CDS |
| GTTAAAGGAAGAGTTGGAGT+GGG | 0.555334 | 4_3:-53256531 | None:intergenic |
| GGGTTCTTCATCGGAAGTGT+GGG | 0.556214 | 4_3:-53256576 | None:intergenic |
| TCAGAGGATTCTTGTTGATG+GGG | 0.558512 | 4_3:+53256787 | Msa0647280:CDS |
| AACAAAATCTCAGAAATTGG+TGG | 0.561940 | 4_3:+53258989 | Msa0647280:three_prime_UTR |
| GCTGAAAGCATCTACAATGA+TGG | 0.565727 | 4_3:+53258662 | Msa0647280:CDS |
| TGCGAAGACTTGTAATTCAG+AGG | 0.566003 | 4_3:+53256856 | Msa0647280:CDS |
| CTTTGATTTACGGAAGCTTG+AGG | 0.566055 | 4_3:+53257990 | Msa0647280:CDS |
| CGATGATGACAACAATTGGA+TGG | 0.567266 | 4_3:+53258685 | Msa0647280:CDS |
| GACCAGCACTAACTAGAAGA+AGG | 0.567897 | 4_3:+53258713 | Msa0647280:exon |
| TTAAAGGAAGAGTTGGAGTG+GGG | 0.573089 | 4_3:-53256530 | None:intergenic |
| CAAGGAATCTAGAACAATGC+AGG | 0.574983 | 4_3:-53259055 | None:intergenic |
| GTCATGAGAAAGAAGGGTAT+GGG | 0.577823 | 4_3:+53256942 | Msa0647280:CDS |
| GAGGATTCTTGTTGATGGGG+AGG | 0.577872 | 4_3:+53256790 | Msa0647280:CDS |
| TGGGGAGGTGAATAGGGCTC+GGG | 0.577992 | 4_3:+53256805 | Msa0647280:CDS |
| CTAACTAGAAGAAGGCTCAA+AGG | 0.585001 | 4_3:+53258721 | Msa0647280:exon |
| TTCTTCATCGGAAGTGTGGG+TGG | 0.585703 | 4_3:-53256573 | None:intergenic |
| CATCGGAAGTGTGGGTGGCG+AGG | 0.587425 | 4_3:-53256568 | None:intergenic |
| CGGAAGTGTGGGTGGCGAGG+AGG | 0.592106 | 4_3:-53256565 | None:intergenic |
| AAATCATGGTGCTTGGGACA+AGG | 0.592412 | 4_3:-53259073 | None:intergenic |
| ACCATTACCTCTCTTTCATG+GGG | 0.593239 | 4_3:-53257328 | None:intergenic |
| GGTAATTTCAAGTGTAGCTG+AGG | 0.595021 | 4_3:+53258613 | Msa0647280:CDS |
| GCAACAACATTCGCATTCTG+TGG | 0.595065 | 4_3:-53256833 | None:intergenic |
| TTCATGATGACTCAGGATTG+GGG | 0.595806 | 4_3:+53258481 | Msa0647280:intron |
| TAAGGGAAGGCCATGCGAGA+GGG | 0.598709 | 4_3:-53256478 | None:intergenic |
| GGTTAAAGGAAGAGTTGGAG+TGG | 0.603090 | 4_3:-53256532 | None:intergenic |
| TGAGGTATTCCAGGTAGAGT+GGG | 0.604028 | 4_3:+53258232 | Msa0647280:CDS |
| CGGGTTGAGATGGGTTTCCG+GGG | 0.604951 | 4_3:-53256628 | None:intergenic |
| TATTGTGCTTGTTGAAACAA+TGG | 0.606831 | 4_3:+53258833 | Msa0647280:three_prime_UTR |
| GCTTGTTGAAACAATGGTGG+TGG | 0.613191 | 4_3:+53258839 | Msa0647280:three_prime_UTR |
| TGGCGAGGAGGAGTTTGTGG+AGG | 0.615770 | 4_3:-53256553 | None:intergenic |
| TAAATCAAAGAGACCGATGT+CGG | 0.616345 | 4_3:-53257977 | None:intergenic |
| GAGTGGATTCAGCGAGCATG+AGG | 0.617545 | 4_3:-53256604 | None:intergenic |
| TGAGAGAAGAGTAGTTCGGG+AGG | 0.620188 | 4_3:-53258536 | None:intergenic |
| ACTCAAACCCCATGAAAGAG+AGG | 0.622281 | 4_3:+53257321 | Msa0647280:CDS |
| ATTGGGGATGAGCTGATAGA+GGG | 0.628114 | 4_3:+53258497 | Msa0647280:CDS |
| GTGTGGTTGAAGATGTGTCT+TGG | 0.629529 | 4_3:+53257209 | Msa0647280:CDS |
| AGCCATTGAACAGTAAGGGA+AGG | 0.631871 | 4_3:-53256491 | None:intergenic |
| ATGGAACCAAAACCAGCCAT+GGG | 0.633074 | 4_3:+53258592 | Msa0647280:CDS |
| ATAAGTTTCAACAAGCTCAG+TGG | 0.635236 | 4_3:-53258954 | None:intergenic |
| CAAACAAAACAACAAAGCAA+TGG | 0.635418 | 4_3:-53258758 | None:intergenic |
| GTAAGGGAAGGCCATGCGAG+AGG | 0.641787 | 4_3:-53256479 | None:intergenic |
| AGGAAGCCATTGAACAGTAA+GGG | 0.642100 | 4_3:-53256495 | None:intergenic |
| ATGATCATAAGATTTGCTTG+TGG | 0.642906 | 4_3:+53257011 | Msa0647280:CDS |
| CGAAACCGAAAACGAAGCAG+AGG | 0.656030 | 4_3:+53256391 | Msa0647280:CDS |
| GCTACACTTGAAATTACCCA+TGG | 0.657118 | 4_3:-53258608 | None:intergenic |
| GCATCTTCAGACACCGACAT+CGG | 0.660753 | 4_3:+53257964 | Msa0647280:CDS |
| GTGTTAGGGACATGAAAGTG+TGG | 0.665723 | 4_3:+53257192 | Msa0647280:intron |
| GATGATGACAACAATTGGAT+GGG | 0.672812 | 4_3:+53258686 | Msa0647280:CDS |
| TGGTGGAGATGACTGCAAGT+TGG | 0.682617 | 4_3:+53257261 | Msa0647280:CDS |
| ATAGAGGGAGATGAAGAAGG+TGG | 0.694464 | 4_3:+53258512 | Msa0647280:CDS |
| TGGCTACTTAGAAAATGCAG+TGG | 0.707079 | 4_3:-53258015 | None:intergenic |
| GAACTACTCTTCTCTCATGG+AGG | 0.707424 | 4_3:+53258542 | Msa0647280:CDS |
| TATAGGTGGAGATTACTCAG+AGG | 0.710079 | 4_3:+53256771 | Msa0647280:intron |
| AAGATGTCAACACTCCCTCG+TGG | 0.712873 | 4_3:-53258262 | None:intergenic |
| TGTGCTTGTTGAAACAATGG+TGG | 0.729223 | 4_3:+53258836 | Msa0647280:three_prime_UTR |
| GAGTGGGATCCTAACCACGA+GGG | 0.751517 | 4_3:+53258248 | Msa0647280:CDS |
| GCAGGTTGAAGGATTCACAG+TGG | 0.757635 | 4_3:-53259037 | None:intergenic |
| AGAGTGGGATCCTAACCACG+AGG | 0.769525 | 4_3:+53258247 | Msa0647280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATCATTTTTCTTATACA+CGG | + | chr4_3:53257532-53257551 | Msa0647280:intron | 15.0% |
| !! | ATTCTTGAGAAAAACAAAAA+TGG | + | chr4_3:53256358-53256377 | Msa0647280:exon | 20.0% |
| !! | GAAAAAAAATCAAAAACCTT+TGG | - | chr4_3:53256686-53256705 | None:intergenic | 20.0% |
| !!! | TGTTTGTTGTTTGTTTTTAT+AGG | + | chr4_3:53256754-53256773 | Msa0647280:intron | 20.0% |
| !!! | TTATGTGTTTGATTTTACTA+AGG | + | chr4_3:53256880-53256899 | Msa0647280:CDS | 20.0% |
| !!! | ATGAGAATTGATTTGATAAT+TGG | + | chr4_3:53257094-53257113 | Msa0647280:intron | 20.0% |
| !! | AAGAAAAATGATAATCATCA+TGG | - | chr4_3:53257527-53257546 | None:intergenic | 20.0% |
| !! | GAAGTTAAATTCCAATTAAT+GGG | + | chr4_3:53257663-53257682 | Msa0647280:intron | 20.0% |
| !! | AAGTTAAATTCCAATTAATG+GGG | + | chr4_3:53257664-53257683 | Msa0647280:intron | 20.0% |
| !!! | GAAAAATATCAGATTTTTCA+TGG | + | chr4_3:53258573-53258592 | Msa0647280:CDS | 20.0% |
| !!! | TTGTTGTTTGTTTTTATAGG+TGG | + | chr4_3:53256757-53256776 | Msa0647280:intron | 25.0% |
| !! | TGATAATTGGTGTGTTTTAT+TGG | + | chr4_3:53257107-53257126 | Msa0647280:intron | 25.0% |
| !! | TTGCATAATGAGAATTTGTT+TGG | + | chr4_3:53257235-53257254 | Msa0647280:CDS | 25.0% |
| !! | TGCATAATGAGAATTTGTTT+GGG | + | chr4_3:53257236-53257255 | Msa0647280:CDS | 25.0% |
| !!! | CTTCATAATATTTGTTGTGT+AGG | + | chr4_3:53257355-53257374 | Msa0647280:intron | 25.0% |
| ! | TCTCATAATGTCATAAATGA+AGG | - | chr4_3:53257445-53257464 | None:intergenic | 25.0% |
| ! | GGAAGTTAAATTCCAATTAA+TGG | + | chr4_3:53257662-53257681 | Msa0647280:intron | 25.0% |
| ! | AGTTAAATTCCAATTAATGG+GGG | + | chr4_3:53257665-53257684 | Msa0647280:intron | 25.0% |
| ! | ACTGAAAACATAATCAAACA+AGG | - | chr4_3:53257728-53257747 | None:intergenic | 25.0% |
| ! | TATTACTATCTTGTAGTTGA+TGG | + | chr4_3:53258087-53258106 | Msa0647280:intron | 25.0% |
| !!! | AACTGATAAGTTTTTAGCTT+TGG | + | chr4_3:53258156-53258175 | Msa0647280:intron | 25.0% |
| ! | CATAAACAGAGAATTGAAAT+AGG | + | chr4_3:53258431-53258450 | Msa0647280:intron | 25.0% |
| ! | CACATATAACAACATAAAAC+TGG | - | chr4_3:53258809-53258828 | None:intergenic | 25.0% |
| ! | ATGAACAAAATCTCAGAAAT+TGG | + | chr4_3:53258986-53259005 | Msa0647280:three_prime_UTR | 25.0% |
| CTTGAGAAAAACAAAAATGG+CGG | + | chr4_3:53256361-53256380 | Msa0647280:exon | 30.0% | |
| ! | CAAAAACCTTTGGAAGAATA+GGG | - | chr4_3:53256676-53256695 | None:intergenic | 30.0% |
| ! | TCAAAAACCTTTGGAAGAAT+AGG | - | chr4_3:53256677-53256696 | None:intergenic | 30.0% |
| ACAAACAACAAACATCATTC+AGG | - | chr4_3:53256748-53256767 | None:intergenic | 30.0% | |
| !! | TTTGATTTTACTAAGGAGAG+AGG | + | chr4_3:53256887-53256906 | Msa0647280:CDS | 30.0% |
| ! | TTGATTTTACTAAGGAGAGA+GGG | + | chr4_3:53256888-53256907 | Msa0647280:CDS | 30.0% |
| !!! | TAATCCTGATTTTAGGTTGA+AGG | + | chr4_3:53256919-53256938 | Msa0647280:CDS | 30.0% |
| !!! | AATCCTGATTTTAGGTTGAA+GGG | + | chr4_3:53256920-53256939 | Msa0647280:CDS | 30.0% |
| ! | ATGATCATAAGATTTGCTTG+TGG | + | chr4_3:53257011-53257030 | Msa0647280:CDS | 30.0% |
| ! | TGATCATAAGATTTGCTTGT+GGG | + | chr4_3:53257012-53257031 | Msa0647280:CDS | 30.0% |
| !! | TAATATTTGTTGTGTAGGCT+AGG | + | chr4_3:53257360-53257379 | Msa0647280:intron | 30.0% |
| TCTTCATCAAGCATATGATA+TGG | + | chr4_3:53257387-53257406 | Msa0647280:intron | 30.0% | |
| ! | AATTGGAATTTAACTTCCGA+TGG | - | chr4_3:53257660-53257679 | None:intergenic | 30.0% |
| GTTAAATTCCAATTAATGGG+GGG | + | chr4_3:53257666-53257685 | Msa0647280:intron | 30.0% | |
| AAACAAGGTAACTTCTCTAT+TGG | - | chr4_3:53257713-53257732 | None:intergenic | 30.0% | |
| CAAAAATACAAACAGACATC+AGG | - | chr4_3:53257843-53257862 | None:intergenic | 30.0% | |
| !! | ATGTCTGTTTGTATTTTTGC+TGG | + | chr4_3:53257844-53257863 | Msa0647280:intron | 30.0% |
| TATGAATCTGTGATAGATGA+AGG | - | chr4_3:53258050-53258069 | None:intergenic | 30.0% | |
| ACATACAAAATCGAATCTAC+AGG | - | chr4_3:53258133-53258152 | None:intergenic | 30.0% | |
| AAACCAAATACGTGAGTAAA+AGG | - | chr4_3:53258193-53258212 | None:intergenic | 30.0% | |
| !! | TTTTTCAATGTGTAGAGATG+AGG | + | chr4_3:53258214-53258233 | Msa0647280:intron | 30.0% |
| AAAGAAACAAAGAATTCCGT+AGG | - | chr4_3:53258343-53258362 | None:intergenic | 30.0% | |
| GTCATCATGAAAATAAAGCA+TGG | - | chr4_3:53258472-53258491 | None:intergenic | 30.0% | |
| !!! | CTTTATTTTCATGATGACTC+AGG | + | chr4_3:53258474-53258493 | Msa0647280:intron | 30.0% |
| CAAACAAAACAACAAAGCAA+TGG | - | chr4_3:53258761-53258780 | None:intergenic | 30.0% | |
| ! | TATTGTGCTTGTTGAAACAA+TGG | + | chr4_3:53258833-53258852 | Msa0647280:three_prime_UTR | 30.0% |
| ! | TATCAAACGTGAAAAGGTAT+TGG | + | chr4_3:53258907-53258926 | Msa0647280:three_prime_UTR | 30.0% |
| AACAAAATCTCAGAAATTGG+TGG | + | chr4_3:53258989-53259008 | Msa0647280:three_prime_UTR | 30.0% | |
| TTGAAGAAGAATTCTCCGTT+TGG | + | chr4_3:53256414-53256433 | Msa0647280:CDS | 35.0% | |
| ! | TTTGGAAGAATAGGGTTTTC+AGG | - | chr4_3:53256668-53256687 | None:intergenic | 35.0% |
| TGAAAACCCTATTCTTCCAA+AGG | + | chr4_3:53256667-53256686 | Msa0647280:CDS | 35.0% | |
| ! | TGATTTTACTAAGGAGAGAG+GGG | + | chr4_3:53256889-53256908 | Msa0647280:CDS | 35.0% |
| ! | AGGGTTGTAATCCTGATTTT+AGG | + | chr4_3:53256912-53256931 | Msa0647280:CDS | 35.0% |
| !!! | TCTTGGAGTGGTTTTAAGAA+TGG | + | chr4_3:53256968-53256987 | Msa0647280:CDS | 35.0% |
| !!! | CTTGGAGTGGTTTTAAGAAT+GGG | + | chr4_3:53256969-53256988 | Msa0647280:CDS | 35.0% |
| ! | AAGAATGGGTATCTTTTGAG+TGG | + | chr4_3:53256983-53257002 | Msa0647280:CDS | 35.0% |
| TGATGCTGTTCATGTTTATG+AGG | + | chr4_3:53257066-53257085 | Msa0647280:CDS | 35.0% | |
| !!! | GTTTTATTGGTCTTGTTGTG+AGG | + | chr4_3:53257120-53257139 | Msa0647280:intron | 35.0% |
| TGAAATTGTCGTTGAACTTG+TGG | + | chr4_3:53257162-53257181 | Msa0647280:intron | 35.0% | |
| ! | ACTTGTGGTTTTTGTGTGTT+AGG | + | chr4_3:53257177-53257196 | Msa0647280:intron | 35.0% |
| ! | CTTGTGGTTTTTGTGTGTTA+GGG | + | chr4_3:53257178-53257197 | Msa0647280:intron | 35.0% |
| ! | AATGAGAATTTGTTTGGGTC+TGG | + | chr4_3:53257241-53257260 | Msa0647280:CDS | 35.0% |
| !! | ATGACTGCAAGTTGGTAATT+TGG | + | chr4_3:53257269-53257288 | Msa0647280:CDS | 35.0% |
| !! | TGACTGCAAGTTGGTAATTT+GGG | + | chr4_3:53257270-53257289 | Msa0647280:CDS | 35.0% |
| !! | AGTTGGTAATTTGGGATTTG+CGG | + | chr4_3:53257278-53257297 | Msa0647280:CDS | 35.0% |
| ATTATGAGAACCAACCCAAT+TGG | + | chr4_3:53257456-53257475 | Msa0647280:intron | 35.0% | |
| TTATGAGAACCAACCCAATT+GGG | + | chr4_3:53257457-53257476 | Msa0647280:intron | 35.0% | |
| GTCAAAACCTGCAATGAATT+TGG | + | chr4_3:53257500-53257519 | Msa0647280:intron | 35.0% | |
| !! | TCCGTATAGTGAATGGATTT+TGG | + | chr4_3:53257936-53257955 | Msa0647280:CDS | 35.0% |
| GCCAAAATCCATTCACTATA+CGG | - | chr4_3:53257940-53257959 | None:intergenic | 35.0% | |
| TAAATCAAAGAGACCGATGT+CGG | - | chr4_3:53257980-53257999 | None:intergenic | 35.0% | |
| ! | ACATCGGTCTCTTTGATTTA+CGG | + | chr4_3:53257980-53257999 | Msa0647280:CDS | 35.0% |
| TGATAGAAGGCTAATGGTTT+GGG | + | chr4_3:53258292-53258311 | Msa0647280:CDS | 35.0% | |
| ! | GTGTCTTCTTTTACCTGTTA+AGG | - | chr4_3:53258319-53258338 | None:intergenic | 35.0% |
| ! | TTTTCATGATGACTCAGGAT+TGG | + | chr4_3:53258479-53258498 | Msa0647280:intron | 35.0% |
| TTTCATGATGACTCAGGATT+GGG | + | chr4_3:53258480-53258499 | Msa0647280:intron | 35.0% | |
| AGGATAATTCTTTCCATGTC+TGG | + | chr4_3:53258633-53258652 | Msa0647280:CDS | 35.0% | |
| GATGATGACAACAATTGGAT+GGG | + | chr4_3:53258686-53258705 | Msa0647280:CDS | 35.0% | |
| CAGATGTATCAAACGTGAAA+AGG | + | chr4_3:53258901-53258920 | Msa0647280:three_prime_UTR | 35.0% | |
| ATAAGTTTCAACAAGCTCAG+TGG | - | chr4_3:53258957-53258976 | None:intergenic | 35.0% | |
| ! | TTCAACCTCTGCTTCGTTTT+CGG | - | chr4_3:53256399-53256418 | None:intergenic | 40.0% |
| !! | AGGAGTGTTTCTCTTCCAAA+CGG | - | chr4_3:53256432-53256451 | None:intergenic | 40.0% |
| ATGAAGAGATCGTAGAGAAG+AGG | - | chr4_3:53256452-53256471 | None:intergenic | 40.0% | |
| AGGAAGCCATTGAACAGTAA+GGG | - | chr4_3:53256498-53256517 | None:intergenic | 40.0% | |
| AAGGAAGCCATTGAACAGTA+AGG | - | chr4_3:53256499-53256518 | None:intergenic | 40.0% | |
| TTAAAGGAAGAGTTGGAGTG+GGG | - | chr4_3:53256533-53256552 | None:intergenic | 40.0% | |
| GTTAAAGGAAGAGTTGGAGT+GGG | - | chr4_3:53256534-53256553 | None:intergenic | 40.0% | |
| GAGGTAATTGGGTTCTTCAT+CGG | - | chr4_3:53256588-53256607 | None:intergenic | 40.0% | |
| CAGGCATTTCATCAAACAGT+TGG | - | chr4_3:53256729-53256748 | None:intergenic | 40.0% | |
| TATAGGTGGAGATTACTCAG+AGG | + | chr4_3:53256771-53256790 | Msa0647280:intron | 40.0% | |
| ACTCAGAGGATTCTTGTTGA+TGG | + | chr4_3:53256785-53256804 | Msa0647280:CDS | 40.0% | |
| CTCAGAGGATTCTTGTTGAT+GGG | + | chr4_3:53256786-53256805 | Msa0647280:CDS | 40.0% | |
| TCAGAGGATTCTTGTTGATG+GGG | + | chr4_3:53256787-53256806 | Msa0647280:CDS | 40.0% | |
| TGCGAAGACTTGTAATTCAG+AGG | + | chr4_3:53256856-53256875 | Msa0647280:CDS | 40.0% | |
| TGACCCTTCAACCTAAAATC+AGG | - | chr4_3:53256926-53256945 | None:intergenic | 40.0% | |
| TTGAAGGGTCATGAGAAAGA+AGG | + | chr4_3:53256935-53256954 | Msa0647280:CDS | 40.0% | |
| TGAAGGGTCATGAGAAAGAA+GGG | + | chr4_3:53256936-53256955 | Msa0647280:CDS | 40.0% | |
| ! | GTCATGAGAAAGAAGGGTAT+GGG | + | chr4_3:53256942-53256961 | Msa0647280:CDS | 40.0% |
| ATTTGCTTGTGGGATGTGTT+TGG | + | chr4_3:53257022-53257041 | Msa0647280:CDS | 40.0% | |
| ACCATTACCTCTCTTTCATG+GGG | - | chr4_3:53257331-53257350 | None:intergenic | 40.0% | |
| CACCATTACCTCTCTTTCAT+GGG | - | chr4_3:53257332-53257351 | None:intergenic | 40.0% | |
| ACACCATTACCTCTCTTTCA+TGG | - | chr4_3:53257333-53257352 | None:intergenic | 40.0% | |
| TATGAGAACCAACCCAATTG+GGG | + | chr4_3:53257458-53257477 | Msa0647280:intron | 40.0% | |
| TAGCATACAAAGCCCCAATT+GGG | - | chr4_3:53257473-53257492 | None:intergenic | 40.0% | |
| ATAGCATACAAAGCCCCAAT+TGG | - | chr4_3:53257474-53257493 | None:intergenic | 40.0% | |
| ! | AATTGGGGCTTTGTATGCTA+TGG | + | chr4_3:53257473-53257492 | Msa0647280:intron | 40.0% |
| TCATGGTCCAAATTCATTGC+AGG | - | chr4_3:53257510-53257529 | None:intergenic | 40.0% | |
| TATCTCAGATTGAGCAACCT+CGG | - | chr4_3:53257586-53257605 | None:intergenic | 40.0% | |
| CCTGGACAGTATGTTCTAAT+AGG | - | chr4_3:53257628-53257647 | None:intergenic | 40.0% | |
| CCTATTAGAACATACTGTCC+AGG | + | chr4_3:53257625-53257644 | Msa0647280:intron | 40.0% | |
| !! | GTTGTATGCTCGTTTTGAAC+AGG | + | chr4_3:53257894-53257913 | Msa0647280:intron | 40.0% |
| CTTTCAGTCCGTATAGTGAA+TGG | + | chr4_3:53257929-53257948 | Msa0647280:CDS | 40.0% | |
| ! | CTTTGATTTACGGAAGCTTG+AGG | + | chr4_3:53257990-53258009 | Msa0647280:CDS | 40.0% |
| TGGCTACTTAGAAAATGCAG+TGG | - | chr4_3:53258018-53258037 | None:intergenic | 40.0% | |
| ! | AATACGTGAGTAAAAGGCAC+TGG | - | chr4_3:53258187-53258206 | None:intergenic | 40.0% |
| ! | GTGCCTTTTACTCACGTATT+TGG | + | chr4_3:53258187-53258206 | Msa0647280:intron | 40.0% |
| !! | CATCTTCTAGTGCTGATAGA+AGG | + | chr4_3:53258279-53258298 | Msa0647280:CDS | 40.0% |
| !! | TAGTGCTGATAGAAGGCTAA+TGG | + | chr4_3:53258286-53258305 | Msa0647280:CDS | 40.0% |
| CTGATAGAAGGCTAATGGTT+TGG | + | chr4_3:53258291-53258310 | Msa0647280:CDS | 40.0% | |
| ! | TAATGGTTTGGGACCTTAAC+AGG | + | chr4_3:53258303-53258322 | Msa0647280:CDS | 40.0% |
| GGTAAAAGAAGACACTCCTA+CGG | + | chr4_3:53258324-53258343 | Msa0647280:intron | 40.0% | |
| TTCATGATGACTCAGGATTG+GGG | + | chr4_3:53258481-53258500 | Msa0647280:intron | 40.0% | |
| TCCATGAGAGAAGAGTAGTT+CGG | - | chr4_3:53258543-53258562 | None:intergenic | 40.0% | |
| !!! | AAATTACCCATGGCTGGTTT+TGG | - | chr4_3:53258601-53258620 | None:intergenic | 40.0% |
| GCTACACTTGAAATTACCCA+TGG | - | chr4_3:53258611-53258630 | None:intergenic | 40.0% | |
| ! | GGTAATTTCAAGTGTAGCTG+AGG | + | chr4_3:53258613-53258632 | Msa0647280:CDS | 40.0% |
| TTCTTTCCATGTCTGGCAAA+TGG | + | chr4_3:53258640-53258659 | Msa0647280:CDS | 40.0% | |
| !! | GCTGAAAGCATCTACAATGA+TGG | + | chr4_3:53258662-53258681 | Msa0647280:CDS | 40.0% |
| ATGGCGATGATGACAACAAT+TGG | + | chr4_3:53258681-53258700 | Msa0647280:CDS | 40.0% | |
| CGATGATGACAACAATTGGA+TGG | + | chr4_3:53258685-53258704 | Msa0647280:CDS | 40.0% | |
| CTAACTAGAAGAAGGCTCAA+AGG | + | chr4_3:53258721-53258740 | Msa0647280:exon | 40.0% | |
| ! | TGTGCTTGTTGAAACAATGG+TGG | + | chr4_3:53258836-53258855 | Msa0647280:three_prime_UTR | 40.0% |
| CACGTTTGATACATCTGTTC+TGG | - | chr4_3:53258898-53258917 | None:intergenic | 40.0% | |
| ! | TCTAGAACAATGCAGGTTGA+AGG | - | chr4_3:53259051-53259070 | None:intergenic | 40.0% |
| ! | CAAGGAATCTAGAACAATGC+AGG | - | chr4_3:53259058-53259077 | None:intergenic | 40.0% |
| AGCCATTGAACAGTAAGGGA+AGG | - | chr4_3:53256494-53256513 | None:intergenic | 45.0% | |
| GGTTAAAGGAAGAGTTGGAG+TGG | - | chr4_3:53256535-53256554 | None:intergenic | 45.0% | |
| GTGGAGGTTAAAGGAAGAGT+TGG | - | chr4_3:53256540-53256559 | None:intergenic | 45.0% | |
| GAGGAGTTTGTGGAGGTTAA+AGG | - | chr4_3:53256549-53256568 | None:intergenic | 45.0% | |
| TCAGCGAGCATGAGGTAATT+GGG | - | chr4_3:53256599-53256618 | None:intergenic | 45.0% | |
| TTCAGCGAGCATGAGGTAAT+TGG | - | chr4_3:53256600-53256619 | None:intergenic | 45.0% | |
| ! | TTGTTGATGGGGAGGTGAAT+AGG | + | chr4_3:53256798-53256817 | Msa0647280:CDS | 45.0% |
| ! | TGTTGATGGGGAGGTGAATA+GGG | + | chr4_3:53256799-53256818 | Msa0647280:CDS | 45.0% |
| GCAACAACATTCGCATTCTG+TGG | - | chr4_3:53256836-53256855 | None:intergenic | 45.0% | |
| ! | TTTTACTAAGGAGAGAGGGG+AGG | + | chr4_3:53256892-53256911 | Msa0647280:CDS | 45.0% |
| TTTACTAAGGAGAGAGGGGA+GGG | + | chr4_3:53256893-53256912 | Msa0647280:CDS | 45.0% | |
| GGTCATGAGAAAGAAGGGTA+TGG | + | chr4_3:53256941-53256960 | Msa0647280:CDS | 45.0% | |
| GTGTTAGGGACATGAAAGTG+TGG | + | chr4_3:53257192-53257211 | Msa0647280:intron | 45.0% | |
| GTGTGGTTGAAGATGTGTCT+TGG | + | chr4_3:53257209-53257228 | Msa0647280:CDS | 45.0% | |
| ! | GAGAATTTGTTTGGGTCTGG+TGG | + | chr4_3:53257244-53257263 | Msa0647280:CDS | 45.0% |
| ATGGGGTTTGAGTGAATGCT+GGG | - | chr4_3:53257314-53257333 | None:intergenic | 45.0% | |
| ACTCAAACCCCATGAAAGAG+AGG | + | chr4_3:53257321-53257340 | Msa0647280:CDS | 45.0% | |
| ACCCCATGAAAGAGAGGTAA+TGG | + | chr4_3:53257327-53257346 | Msa0647280:intron | 45.0% | |
| ATACAAAGCCCCAATTGGGT+TGG | - | chr4_3:53257469-53257488 | None:intergenic | 45.0% | |
| ATCTCAGATTGAGCAACCTC+GGG | - | chr4_3:53257585-53257604 | None:intergenic | 45.0% | |
| AGGAAAAGCCCCCCATTAAT+TGG | - | chr4_3:53257677-53257696 | None:intergenic | 45.0% | |
| ! | GGGGCTTTTCCTGCAAAAAT+GGG | + | chr4_3:53257685-53257704 | Msa0647280:intron | 45.0% |
| ! | GGGCTTTTCCTGCAAAAATG+GGG | + | chr4_3:53257686-53257705 | Msa0647280:intron | 45.0% |
| ! | GGCTTTTCCTGCAAAAATGG+GGG | + | chr4_3:53257687-53257706 | Msa0647280:intron | 45.0% |
| ATAGATGAAGGTCGTACGTG+TGG | - | chr4_3:53258038-53258057 | None:intergenic | 45.0% | |
| ! | GTGTAGAGATGAGGTATTCC+AGG | + | chr4_3:53258223-53258242 | Msa0647280:intron | 45.0% |
| ! | ATGAGGTATTCCAGGTAGAG+TGG | + | chr4_3:53258231-53258250 | Msa0647280:CDS | 45.0% |
| ! | TGAGGTATTCCAGGTAGAGT+GGG | + | chr4_3:53258232-53258251 | Msa0647280:CDS | 45.0% |
| ATTGGGGATGAGCTGATAGA+GGG | + | chr4_3:53258497-53258516 | Msa0647280:CDS | 45.0% | |
| CTGATAGAGGGAGATGAAGA+AGG | + | chr4_3:53258509-53258528 | Msa0647280:CDS | 45.0% | |
| ATAGAGGGAGATGAAGAAGG+TGG | + | chr4_3:53258512-53258531 | Msa0647280:CDS | 45.0% | |
| CCATGAGAGAAGAGTAGTTC+GGG | - | chr4_3:53258542-53258561 | None:intergenic | 45.0% | |
| GAACTACTCTTCTCTCATGG+AGG | + | chr4_3:53258542-53258561 | Msa0647280:CDS | 45.0% | |
| TTCTCTCATGGAGGTCACAA+AGG | + | chr4_3:53258551-53258570 | Msa0647280:CDS | 45.0% | |
| ATGGAACCAAAACCAGCCAT+GGG | + | chr4_3:53258592-53258611 | Msa0647280:CDS | 45.0% | |
| CACTTGAAATTACCCATGGC+TGG | - | chr4_3:53258607-53258626 | None:intergenic | 45.0% | |
| TTTCAGCCATTTGCCAGACA+TGG | - | chr4_3:53258649-53258668 | None:intergenic | 45.0% | |
| GACCAGCACTAACTAGAAGA+AGG | + | chr4_3:53258713-53258732 | Msa0647280:exon | 45.0% | |
| ! | AGCCTTCTTCTAGTTAGTGC+TGG | - | chr4_3:53258718-53258737 | None:intergenic | 45.0% |
| ! | GCTTGTTGAAACAATGGTGG+TGG | + | chr4_3:53258839-53258858 | Msa0647280:three_prime_UTR | 45.0% |
| CGAAACCGAAAACGAAGCAG+AGG | + | chr4_3:53256391-53256410 | Msa0647280:CDS | 50.0% | |
| GGCCTTCCCTTACTGTTCAA+TGG | + | chr4_3:53256489-53256508 | Msa0647280:CDS | 50.0% | |
| ! | TTCTTCATCGGAAGTGTGGG+TGG | - | chr4_3:53256576-53256595 | None:intergenic | 50.0% |
| ! | GGGTTCTTCATCGGAAGTGT+GGG | - | chr4_3:53256579-53256598 | None:intergenic | 50.0% |
| TGGGTTCTTCATCGGAAGTG+TGG | - | chr4_3:53256580-53256599 | None:intergenic | 50.0% | |
| TTCAGGATCTGCAGCGATGA+CGG | - | chr4_3:53256651-53256670 | None:intergenic | 50.0% | |
| ! | GAGGATTCTTGTTGATGGGG+AGG | + | chr4_3:53256790-53256809 | Msa0647280:CDS | 50.0% |
| ! | AAGAAGGGTATGGGCTGTCT+TGG | + | chr4_3:53256951-53256970 | Msa0647280:CDS | 50.0% |
| TGGTGGAGATGACTGCAAGT+TGG | + | chr4_3:53257261-53257280 | Msa0647280:CDS | 50.0% | |
| CATGGGGTTTGAGTGAATGC+TGG | - | chr4_3:53257315-53257334 | None:intergenic | 50.0% | |
| TCTCAGATTGAGCAACCTCG+GGG | - | chr4_3:53257584-53257603 | None:intergenic | 50.0% | |
| GTCCAGGAGAAACTCACCAT+CGG | + | chr4_3:53257641-53257660 | Msa0647280:intron | 50.0% | |
| TTCCGATGGTGAGTTTCTCC+TGG | - | chr4_3:53257646-53257665 | None:intergenic | 50.0% | |
| ! | GGGGGCTTTTCCTGCAAAAA+TGG | + | chr4_3:53257684-53257703 | Msa0647280:intron | 50.0% |
| !! | CTATTGGCCCCCATTTTTGC+AGG | - | chr4_3:53257697-53257716 | None:intergenic | 50.0% |
| GCATCTTCAGACACCGACAT+CGG | + | chr4_3:53257964-53257983 | Msa0647280:CDS | 50.0% | |
| AAGATGTCAACACTCCCTCG+TGG | - | chr4_3:53258265-53258284 | None:intergenic | 50.0% | |
| GATTGGGGATGAGCTGATAG+AGG | + | chr4_3:53258496-53258515 | Msa0647280:CDS | 50.0% | |
| TGAGAGAAGAGTAGTTCGGG+AGG | - | chr4_3:53258539-53258558 | None:intergenic | 50.0% | |
| CCCGAACTACTCTTCTCTCA+TGG | + | chr4_3:53258539-53258558 | Msa0647280:CDS | 50.0% | |
| CATGGAACCAAAACCAGCCA+TGG | + | chr4_3:53258591-53258610 | Msa0647280:CDS | 50.0% | |
| ! | GCAGGTTGAAGGATTCACAG+TGG | - | chr4_3:53259040-53259059 | None:intergenic | 50.0% |
| TCATCTCACACCCTCTCGCA+TGG | + | chr4_3:53256468-53256487 | Msa0647280:CDS | 55.0% | |
| TAAGGGAAGGCCATGCGAGA+GGG | - | chr4_3:53256481-53256500 | None:intergenic | 55.0% | |
| GAAGAGTTGGAGTGGGGTTG+AGG | - | chr4_3:53256527-53256546 | None:intergenic | 55.0% | |
| ! | GAGTGGATTCAGCGAGCATG+AGG | - | chr4_3:53256607-53256626 | None:intergenic | 55.0% |
| ! | ACGGGTTGAGATGGGTTTCC+GGG | - | chr4_3:53256632-53256651 | None:intergenic | 55.0% |
| !! | GACGGGTTGAGATGGGTTTC+CGG | - | chr4_3:53256633-53256652 | None:intergenic | 55.0% |
| !! | CAGCGATGACGGGTTGAGAT+GGG | - | chr4_3:53256640-53256659 | None:intergenic | 55.0% |
| TCAGGATCTGCAGCGATGAC+GGG | - | chr4_3:53256650-53256669 | None:intergenic | 55.0% | |
| ATGGGGAGGTGAATAGGGCT+CGG | + | chr4_3:53256804-53256823 | Msa0647280:CDS | 55.0% | |
| GATTGATGTTTAGCCCCCCG+AGG | + | chr4_3:53257566-53257585 | Msa0647280:intron | 55.0% | |
| TCAGATTGAGCAACCTCGGG+GGG | - | chr4_3:53257582-53257601 | None:intergenic | 55.0% | |
| CTCAGATTGAGCAACCTCGG+GGG | - | chr4_3:53257583-53257602 | None:intergenic | 55.0% | |
| GGTTAGGATCCCACTCTACC+TGG | - | chr4_3:53258244-53258263 | None:intergenic | 55.0% | |
| AGAGTGGGATCCTAACCACG+AGG | + | chr4_3:53258247-53258266 | Msa0647280:CDS | 55.0% | |
| GAGTGGGATCCTAACCACGA+GGG | + | chr4_3:53258248-53258267 | Msa0647280:CDS | 55.0% | |
| GTCAACACTCCCTCGTGGTT+AGG | - | chr4_3:53258260-53258279 | None:intergenic | 55.0% | |
| GTAAGGGAAGGCCATGCGAG+AGG | - | chr4_3:53256482-53256501 | None:intergenic | 60.0% | |
| GAGTGGGGTTGAGGAGGTGA+AGG | - | chr4_3:53256518-53256537 | None:intergenic | 60.0% | |
| GAGTTGGAGTGGGGTTGAGG+AGG | - | chr4_3:53256524-53256543 | None:intergenic | 60.0% | |
| TGGCGAGGAGGAGTTTGTGG+AGG | - | chr4_3:53256556-53256575 | None:intergenic | 60.0% | |
| CTCGCTGAATCCACTCTCCC+CGG | + | chr4_3:53256611-53256630 | Msa0647280:CDS | 60.0% | |
| ! | AGATGGGTTTCCGGGGAGAG+TGG | - | chr4_3:53256624-53256643 | None:intergenic | 60.0% |
| ! | CGGGTTGAGATGGGTTTCCG+GGG | - | chr4_3:53256631-53256650 | None:intergenic | 60.0% |
| !! | GCAGCGATGACGGGTTGAGA+TGG | - | chr4_3:53256641-53256660 | None:intergenic | 60.0% |
| TGGGGAGGTGAATAGGGCTC+GGG | + | chr4_3:53256805-53256824 | Msa0647280:CDS | 60.0% | |
| ! | GGGTATGGGCTGTCTTGGAG+TGG | + | chr4_3:53256956-53256975 | Msa0647280:CDS | 60.0% |
| GGGTGGCGAGGAGGAGTTTG+TGG | - | chr4_3:53256559-53256578 | None:intergenic | 65.0% | |
| ! | CATCGGAAGTGTGGGTGGCG+AGG | - | chr4_3:53256571-53256590 | None:intergenic | 65.0% |
| ! | CGGAAGTGTGGGTGGCGAGG+AGG | - | chr4_3:53256568-53256587 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 53256339 | 53259091 | 53256339 | ID=Msa0647280;Name=Msa0647280 |
| chr4_3 | mRNA | 53256339 | 53259091 | 53256339 | ID=Msa0647280-mRNA-1;Parent=Msa0647280;Name=Msa0647280-mRNA-1;_AED=0.12;_eAED=0.12;_QI=38|1|1|1|1|1|6|367|405 |
| chr4_3 | exon | 53256339 | 53256688 | 53256339 | ID=Msa0647280-mRNA-1:exon:13246;Parent=Msa0647280-mRNA-1 |
| chr4_3 | exon | 53256776 | 53257087 | 53256776 | ID=Msa0647280-mRNA-1:exon:13247;Parent=Msa0647280-mRNA-1 |
| chr4_3 | exon | 53257199 | 53257342 | 53257199 | ID=Msa0647280-mRNA-1:exon:13248;Parent=Msa0647280-mRNA-1 |
| chr4_3 | exon | 53257916 | 53258040 | 53257916 | ID=Msa0647280-mRNA-1:exon:13249;Parent=Msa0647280-mRNA-1 |
| chr4_3 | exon | 53258229 | 53258324 | 53258229 | ID=Msa0647280-mRNA-1:exon:13250;Parent=Msa0647280-mRNA-1 |
| chr4_3 | exon | 53258496 | 53259091 | 53258496 | ID=Msa0647280-mRNA-1:exon:13251;Parent=Msa0647280-mRNA-1 |
| chr4_3 | five_prime_UTR | 53256339 | 53256376 | 53256339 | ID=Msa0647280-mRNA-1:five_prime_utr;Parent=Msa0647280-mRNA-1 |
| chr4_3 | CDS | 53256377 | 53256688 | 53256377 | ID=Msa0647280-mRNA-1:cds;Parent=Msa0647280-mRNA-1 |
| chr4_3 | CDS | 53256776 | 53257087 | 53256776 | ID=Msa0647280-mRNA-1:cds;Parent=Msa0647280-mRNA-1 |
| chr4_3 | CDS | 53257199 | 53257342 | 53257199 | ID=Msa0647280-mRNA-1:cds;Parent=Msa0647280-mRNA-1 |
| chr4_3 | CDS | 53257916 | 53258040 | 53257916 | ID=Msa0647280-mRNA-1:cds;Parent=Msa0647280-mRNA-1 |
| chr4_3 | CDS | 53258229 | 53258324 | 53258229 | ID=Msa0647280-mRNA-1:cds;Parent=Msa0647280-mRNA-1 |
| chr4_3 | CDS | 53258496 | 53258724 | 53258496 | ID=Msa0647280-mRNA-1:cds;Parent=Msa0647280-mRNA-1 |
| chr4_3 | three_prime_UTR | 53258725 | 53259091 | 53258725 | ID=Msa0647280-mRNA-1:three_prime_utr;Parent=Msa0647280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
