Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212220 | XP_013464289.1 | 88.716 | 257 | 27 | 2 | 1 | 256 | 1 | 256 | 1.45e-156 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212220 | sp|Q5DWG1|CRJ35_CRYJA | 51.339 | 224 | 101 | 4 | 26 | 249 | 25 | 240 | 1.02e-77 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212220 | A0A072V8H5 | 88.716 | 257 | 27 | 2 | 1 | 256 | 1 | 256 | 6.93e-157 | 473 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014790 | Msa0212220 | 0.830749 | 2.465189e-55 | -8.615850e-47 |
| Msa0043370 | Msa0212220 | 0.809587 | 1.757752e-50 | -8.615850e-47 |
| Msa0063100 | Msa0212220 | 0.806989 | 6.290861e-50 | -8.615850e-47 |
| Msa0063170 | Msa0212220 | 0.819205 | 1.312726e-52 | -8.615850e-47 |
| Msa0212190 | Msa0212220 | 0.949575 | 9.635249e-108 | -8.615850e-47 |
| Msa0212210 | Msa0212220 | 0.835966 | 1.233549e-56 | -8.615850e-47 |
| Msa0212220 | Msa0266380 | 0.809512 | 1.823815e-50 | -8.615850e-47 |
| Msa0212220 | Msa0291240 | 0.816695 | 4.843050e-52 | -8.615850e-47 |
| Msa0212220 | Msa0329550 | 0.808283 | 3.342643e-50 | -8.615850e-47 |
| Msa0212220 | Msa0329560 | 0.965705 | 5.949362e-125 | -8.615850e-47 |
| Msa0212220 | Msa0329590 | 0.819093 | 1.391842e-52 | -8.615850e-47 |
| Msa0212220 | Msa0341860 | 0.803010 | 4.275409e-49 | -8.615850e-47 |
| Msa0212220 | Msa0350380 | 0.822972 | 1.779629e-53 | -8.615850e-47 |
| Msa0212220 | Msa0406540 | 0.809022 | 2.323955e-50 | -8.615850e-47 |
| Msa0212220 | Msa0439700 | 0.800223 | 1.594393e-48 | -8.615850e-47 |
| Msa0212220 | Msa0451760 | 0.802491 | 5.469737e-49 | -8.615850e-47 |
| Msa0212220 | Msa0752580 | 0.805226 | 1.478627e-49 | -8.615850e-47 |
| Msa0212220 | Msa0754500 | 0.801124 | 1.044116e-48 | -8.615850e-47 |
| Msa0212220 | Msa0849130 | 0.808323 | 3.276300e-50 | -8.615850e-47 |
| Msa0212220 | Msa0867810 | 0.829950 | 3.863430e-55 | -8.615850e-47 |
| Msa0212220 | Msa0885200 | 0.801589 | 8.383754e-49 | -8.615850e-47 |
| Msa0212220 | Msa0885220 | 0.807072 | 6.041874e-50 | -8.615850e-47 |
| Msa0212220 | Msa0892540 | 0.801052 | 1.079938e-48 | -8.615850e-47 |
| Msa0212220 | Msa0919490 | 0.805041 | 1.616795e-49 | -8.615850e-47 |
| Msa0212220 | Msa0957800 | 0.816899 | 4.359227e-52 | -8.615850e-47 |
| Msa0212220 | Msa1009150 | 0.808257 | 3.384171e-50 | -8.615850e-47 |
| Msa0212220 | Msa1098350 | 0.803698 | 3.078233e-49 | -8.615850e-47 |
| Msa0212220 | Msa1135660 | 0.801793 | 7.614199e-49 | -8.615850e-47 |
| Msa0212220 | Msa1138480 | 0.803175 | 3.952153e-49 | -8.615850e-47 |
| Msa0212220 | Msa1140460 | 0.817098 | 3.933418e-52 | -8.615850e-47 |
| Msa0212220 | Msa1182780 | 0.830542 | 2.768937e-55 | -8.615850e-47 |
| Msa0212220 | Msa1279310 | 0.812046 | 5.161573e-51 | -8.615850e-47 |
| Msa0212220 | Msa1459170 | 0.801942 | 7.096782e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212220 | MtrunA17_Chr2g0311521 | 88.716 | 257 | 27 | 2 | 1 | 256 | 1 | 256 | 1.33e-160 | 473 |
| Msa0212220 | MtrunA17_Chr2g0311551 | 80.545 | 257 | 45 | 4 | 1 | 256 | 1 | 253 | 6.37e-136 | 408 |
| Msa0212220 | MtrunA17_Chr1g0156711 | 52.290 | 262 | 114 | 5 | 7 | 263 | 7 | 262 | 1.06e-92 | 276 |
| Msa0212220 | MtrunA17_Chr3g0142781 | 53.629 | 248 | 108 | 4 | 8 | 252 | 11 | 254 | 5.41e-90 | 270 |
| Msa0212220 | MtrunA17_Chr2g0311561 | 56.223 | 233 | 98 | 2 | 23 | 254 | 10 | 239 | 2.91e-89 | 266 |
| Msa0212220 | MtrunA17_Chr8g0352471 | 53.219 | 233 | 105 | 2 | 19 | 250 | 21 | 250 | 2.27e-87 | 263 |
| Msa0212220 | MtrunA17_Chr2g0311531 | 55.686 | 255 | 78 | 8 | 21 | 269 | 24 | 249 | 1.16e-83 | 251 |
| Msa0212220 | MtrunA17_Chr8g0371781 | 51.020 | 245 | 109 | 3 | 23 | 260 | 27 | 267 | 3.48e-83 | 251 |
| Msa0212220 | MtrunA17_Chr8g0357311 | 51.709 | 234 | 108 | 3 | 22 | 253 | 24 | 254 | 4.94e-83 | 249 |
| Msa0212220 | MtrunA17_Chr4g0037351 | 50.199 | 251 | 118 | 3 | 1 | 247 | 1 | 248 | 1.55e-81 | 248 |
| Msa0212220 | MtrunA17_Chr5g0405581 | 48.387 | 248 | 118 | 5 | 5 | 247 | 9 | 251 | 1.30e-78 | 240 |
| Msa0212220 | MtrunA17_Chr5g0428801 | 46.667 | 255 | 127 | 4 | 2 | 251 | 4 | 254 | 5.16e-78 | 239 |
| Msa0212220 | MtrunA17_Chr1g0154591 | 51.037 | 241 | 105 | 7 | 9 | 247 | 3 | 232 | 2.36e-77 | 234 |
| Msa0212220 | MtrunA17_Chr5g0405611 | 47.876 | 259 | 122 | 5 | 4 | 260 | 76 | 323 | 1.86e-75 | 234 |
| Msa0212220 | MtrunA17_Chr7g0265011 | 48.035 | 229 | 112 | 5 | 21 | 247 | 64 | 287 | 2.41e-74 | 228 |
| Msa0212220 | MtrunA17_Chr2g0312181 | 45.714 | 245 | 127 | 4 | 5 | 247 | 3 | 243 | 8.71e-74 | 225 |
| Msa0212220 | MtrunA17_Chr4g0037331 | 48.548 | 241 | 116 | 4 | 6 | 246 | 7 | 239 | 1.63e-73 | 228 |
| Msa0212220 | MtrunA17_Chr8g0351851 | 47.917 | 240 | 114 | 6 | 8 | 246 | 8 | 237 | 1.66e-73 | 224 |
| Msa0212220 | MtrunA17_Chr1g0180161 | 45.489 | 266 | 130 | 7 | 5 | 268 | 10 | 262 | 1.66e-72 | 223 |
| Msa0212220 | MtrunA17_Chr3g0141341 | 50.439 | 228 | 105 | 7 | 26 | 251 | 14 | 235 | 1.35e-71 | 219 |
| Msa0212220 | MtrunA17_Chr1g0180221 | 45.935 | 246 | 117 | 6 | 5 | 248 | 52 | 283 | 7.25e-71 | 219 |
| Msa0212220 | MtrunA17_Chr1g0179851 | 46.218 | 238 | 121 | 5 | 14 | 249 | 9 | 241 | 2.64e-70 | 216 |
| Msa0212220 | MtrunA17_Chr1g0180121 | 45.714 | 245 | 119 | 6 | 5 | 247 | 10 | 242 | 1.36e-69 | 215 |
| Msa0212220 | MtrunA17_Chr1g0180231 | 45.749 | 247 | 120 | 6 | 5 | 249 | 10 | 244 | 2.75e-69 | 214 |
| Msa0212220 | MtrunA17_Chr1g0179871 | 45.749 | 247 | 120 | 6 | 5 | 249 | 10 | 244 | 2.75e-69 | 214 |
| Msa0212220 | MtrunA17_Chr1g0179891 | 45.935 | 246 | 119 | 6 | 6 | 249 | 6 | 239 | 3.51e-69 | 214 |
| Msa0212220 | MtrunA17_Chr8g0371771 | 47.718 | 241 | 113 | 6 | 8 | 246 | 14 | 243 | 3.09e-68 | 213 |
| Msa0212220 | MtrunA17_Chr8g0392961 | 48.182 | 220 | 105 | 5 | 30 | 247 | 33 | 245 | 1.71e-65 | 204 |
| Msa0212220 | MtrunA17_Chr2g0311501 | 51.562 | 192 | 86 | 6 | 69 | 255 | 2 | 191 | 1.30e-63 | 198 |
| Msa0212220 | MtrunA17_Chr6g0482741 | 42.041 | 245 | 132 | 6 | 5 | 247 | 4 | 240 | 1.94e-63 | 199 |
| Msa0212220 | MtrunA17_Chr7g0239131 | 41.129 | 248 | 139 | 5 | 1 | 247 | 1 | 242 | 4.30e-63 | 198 |
| Msa0212220 | MtrunA17_Chr5g0424221 | 44.130 | 247 | 123 | 7 | 1 | 246 | 7 | 239 | 5.51e-61 | 194 |
| Msa0212220 | MtrunA17_Chr3g0112091 | 38.843 | 242 | 141 | 5 | 8 | 247 | 1 | 237 | 3.94e-60 | 191 |
| Msa0212220 | MtrunA17_Chr6g0452331 | 40.226 | 266 | 146 | 8 | 1 | 258 | 3 | 263 | 1.24e-59 | 190 |
| Msa0212220 | MtrunA17_Chr4g0031221 | 40.249 | 241 | 130 | 9 | 13 | 246 | 18 | 251 | 1.44e-47 | 159 |
| Msa0212220 | MtrunA17_Chr5g0406771 | 43.011 | 186 | 93 | 4 | 5 | 187 | 1 | 176 | 1.50e-47 | 156 |
| Msa0212220 | MtrunA17_Chr5g0397821 | 40.708 | 226 | 110 | 7 | 23 | 247 | 23 | 225 | 4.55e-47 | 157 |
| Msa0212220 | MtrunA17_Chr5g0397831 | 36.220 | 254 | 135 | 7 | 1 | 247 | 3 | 236 | 4.31e-42 | 144 |
| Msa0212220 | MtrunA17_Chr8g0386341 | 39.442 | 251 | 123 | 10 | 1 | 247 | 23 | 248 | 4.53e-40 | 139 |
| Msa0212220 | MtrunA17_Chr2g0309611 | 30.120 | 249 | 157 | 7 | 5 | 245 | 10 | 249 | 3.17e-34 | 124 |
| Msa0212220 | MtrunA17_Chr1g0179911 | 28.682 | 258 | 163 | 6 | 1 | 252 | 1 | 243 | 6.23e-27 | 105 |
| Msa0212220 | MtrunA17_Chr8g0386351 | 31.837 | 245 | 93 | 10 | 5 | 247 | 46 | 218 | 1.25e-22 | 92.8 |
| Msa0212220 | MtrunA17_Chr1g0180181 | 43.119 | 109 | 58 | 4 | 163 | 268 | 12 | 119 | 9.54e-21 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212220 | AT1G75800.1 | 50.388 | 258 | 119 | 4 | 1 | 253 | 1 | 254 | 1.02e-86 | 262 |
| Msa0212220 | AT1G20030.2 | 52.321 | 237 | 105 | 3 | 21 | 252 | 17 | 250 | 1.53e-84 | 256 |
| Msa0212220 | AT1G20030.1 | 52.119 | 236 | 105 | 3 | 22 | 252 | 1 | 233 | 6.26e-84 | 254 |
| Msa0212220 | AT2G17860.1 | 54.506 | 233 | 95 | 5 | 23 | 248 | 22 | 250 | 1.64e-81 | 246 |
| Msa0212220 | AT4G36010.1 | 52.743 | 237 | 102 | 4 | 21 | 250 | 20 | 253 | 1.48e-78 | 240 |
| Msa0212220 | AT4G36010.2 | 52.743 | 237 | 102 | 4 | 21 | 250 | 20 | 253 | 1.48e-78 | 240 |
| Msa0212220 | AT4G24180.6 | 49.200 | 250 | 112 | 5 | 5 | 248 | 17 | 257 | 1.32e-77 | 236 |
| Msa0212220 | AT4G24180.1 | 49.200 | 250 | 112 | 5 | 5 | 248 | 17 | 257 | 3.59e-77 | 237 |
| Msa0212220 | AT4G24180.5 | 48.400 | 250 | 109 | 6 | 5 | 248 | 17 | 252 | 1.89e-74 | 228 |
| Msa0212220 | AT4G24180.2 | 48.400 | 250 | 109 | 6 | 5 | 248 | 17 | 252 | 6.54e-74 | 228 |
| Msa0212220 | AT1G75050.1 | 49.593 | 246 | 112 | 7 | 7 | 250 | 11 | 246 | 8.37e-74 | 226 |
| Msa0212220 | AT4G38660.1 | 48.148 | 243 | 118 | 4 | 11 | 253 | 17 | 251 | 1.07e-73 | 229 |
| Msa0212220 | AT4G38670.3 | 46.939 | 245 | 123 | 4 | 7 | 247 | 6 | 247 | 6.98e-73 | 225 |
| Msa0212220 | AT4G38670.1 | 46.939 | 245 | 123 | 4 | 7 | 247 | 6 | 247 | 6.98e-73 | 225 |
| Msa0212220 | AT1G75040.1 | 46.964 | 247 | 123 | 4 | 1 | 247 | 1 | 239 | 2.30e-72 | 222 |
| Msa0212220 | AT4G38660.2 | 49.138 | 232 | 110 | 4 | 22 | 253 | 6 | 229 | 2.93e-72 | 224 |
| Msa0212220 | AT1G75030.1 | 49.180 | 244 | 110 | 8 | 7 | 247 | 11 | 243 | 6.50e-71 | 219 |
| Msa0212220 | AT4G38670.2 | 48.673 | 226 | 109 | 4 | 26 | 247 | 9 | 231 | 8.24e-71 | 219 |
| Msa0212220 | AT1G19320.1 | 47.154 | 246 | 119 | 5 | 6 | 246 | 7 | 246 | 1.12e-70 | 218 |
| Msa0212220 | AT5G38280.1 | 44.882 | 254 | 129 | 6 | 1 | 247 | 1 | 250 | 5.11e-70 | 228 |
| Msa0212220 | AT5G38280.2 | 44.882 | 254 | 129 | 6 | 1 | 247 | 1 | 250 | 1.06e-69 | 227 |
| Msa0212220 | AT5G24620.1 | 45.238 | 252 | 124 | 6 | 4 | 248 | 8 | 252 | 1.90e-69 | 220 |
| Msa0212220 | AT5G24620.4 | 45.238 | 252 | 124 | 6 | 4 | 248 | 63 | 307 | 6.62e-69 | 221 |
| Msa0212220 | AT5G24620.3 | 45.238 | 252 | 124 | 6 | 4 | 248 | 84 | 328 | 7.42e-69 | 221 |
| Msa0212220 | AT4G24180.3 | 48.291 | 234 | 106 | 5 | 5 | 232 | 17 | 241 | 1.36e-68 | 215 |
| Msa0212220 | AT1G73620.1 | 48.305 | 236 | 107 | 7 | 14 | 247 | 38 | 260 | 1.54e-67 | 211 |
| Msa0212220 | AT1G18250.1 | 46.610 | 236 | 111 | 7 | 14 | 247 | 17 | 239 | 3.22e-65 | 204 |
| Msa0212220 | AT4G24180.4 | 47.863 | 234 | 102 | 6 | 5 | 232 | 17 | 236 | 3.28e-65 | 206 |
| Msa0212220 | AT1G18250.2 | 47.598 | 229 | 109 | 7 | 23 | 247 | 19 | 240 | 1.89e-64 | 202 |
| Msa0212220 | AT1G77700.3 | 44.151 | 265 | 132 | 9 | 2 | 265 | 39 | 288 | 6.35e-63 | 201 |
| Msa0212220 | AT1G77700.2 | 44.223 | 251 | 126 | 8 | 2 | 251 | 39 | 276 | 1.52e-62 | 199 |
| Msa0212220 | AT1G77700.1 | 45.000 | 240 | 118 | 7 | 26 | 265 | 91 | 316 | 8.27e-61 | 196 |
| Msa0212220 | AT5G02140.2 | 39.331 | 239 | 140 | 3 | 10 | 247 | 7 | 241 | 3.58e-59 | 189 |
| Msa0212220 | AT5G02140.1 | 39.271 | 247 | 144 | 4 | 10 | 254 | 7 | 249 | 4.47e-59 | 190 |
| Msa0212220 | AT1G70250.1 | 40.400 | 250 | 130 | 7 | 22 | 262 | 143 | 382 | 1.78e-53 | 186 |
| Msa0212220 | AT2G28790.1 | 39.918 | 243 | 133 | 9 | 11 | 246 | 12 | 248 | 7.15e-52 | 170 |
| Msa0212220 | AT2G28790.2 | 39.918 | 243 | 133 | 9 | 11 | 246 | 37 | 273 | 7.22e-52 | 171 |
| Msa0212220 | AT5G40020.1 | 40.444 | 225 | 127 | 5 | 26 | 248 | 30 | 249 | 8.97e-51 | 167 |
| Msa0212220 | AT4G18253.1 | 35.458 | 251 | 151 | 4 | 1 | 250 | 1 | 241 | 9.01e-51 | 167 |
| Msa0212220 | AT4G11650.1 | 39.357 | 249 | 127 | 8 | 1 | 249 | 1 | 225 | 6.01e-47 | 157 |
| Msa0212220 | AT4G18250.1 | 37.600 | 250 | 146 | 4 | 1 | 249 | 34 | 274 | 2.86e-46 | 164 |
| Msa0212220 | AT4G36000.2 | 51.034 | 145 | 64 | 3 | 103 | 247 | 1 | 138 | 5.24e-46 | 154 |
| Msa0212220 | AT4G36000.1 | 51.034 | 145 | 64 | 3 | 103 | 247 | 1 | 138 | 5.24e-46 | 154 |
| Msa0212220 | AT5G24620.2 | 52.066 | 121 | 52 | 2 | 134 | 248 | 15 | 135 | 6.80e-36 | 130 |
| Msa0212220 | AT2G24810.1 | 50.649 | 77 | 38 | 0 | 170 | 246 | 116 | 192 | 1.99e-19 | 84.0 |
Find 70 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATGGACTGGTCATTTC+TGG | 0.137238 | 2_1:-54162592 | Msa0212220:CDS |
| TTATATCACAAAAGAAAATT+TGG | 0.173764 | 2_1:-54162980 | Msa0212220:five_prime_UTR |
| ACACTTGGCTCACAAGTATT+TGG | 0.205169 | 2_1:+54162197 | None:intergenic |
| TGCAAACTGTTTCTTGTTAT+CGG | 0.235613 | 2_1:-54161971 | Msa0212220:three_prime_UTR |
| TGTTGCGTTGGGAATCATTC+AGG | 0.295847 | 2_1:-54162221 | Msa0212220:CDS |
| GCTATACAAATCTGTTATTC+TGG | 0.307815 | 2_1:-54161879 | Msa0212220:three_prime_UTR |
| AGTTAACAATTGCAACTATA+CGG | 0.316482 | 2_1:-54162720 | Msa0212220:CDS |
| TATTAGTTTGCACCCGCTTT+TGG | 0.333176 | 2_1:-54161928 | Msa0212220:three_prime_UTR |
| TGGGACGGTTGTGGCGTGCC+AGG | 0.354594 | 2_1:-54162276 | Msa0212220:CDS |
| ATTGTTCCGTTAGGTGGTTC+CGG | 0.360511 | 2_1:-54162374 | Msa0212220:CDS |
| CGTGCTGTTACATGACTTAC+CGG | 0.371524 | 2_1:+54162355 | None:intergenic |
| GCCATCACATGCTACTTTGC+CGG | 0.403351 | 2_1:+54162505 | None:intergenic |
| CCAGAAATGACCAGTCCATT+TGG | 0.411350 | 2_1:+54162592 | None:intergenic |
| CAAATGGACTGGTCATTTCT+GGG | 0.415506 | 2_1:-54162591 | Msa0212220:CDS |
| ACAATTGCAACTATACGGTT+TGG | 0.427382 | 2_1:-54162715 | Msa0212220:CDS |
| ATCTAACCTGGCGTTATTTG+AGG | 0.441014 | 2_1:+54162061 | None:intergenic |
| GACCAGCACGTTCACTTGTC+CGG | 0.442150 | 2_1:-54162114 | Msa0212220:CDS |
| CAATTACAGCGCCTGCCAAA+TGG | 0.445223 | 2_1:-54162607 | Msa0212220:CDS |
| CTGTAATTGTTGAATTCTCA+CGG | 0.465536 | 2_1:+54162621 | None:intergenic |
| CGGATCACCGCCTTTGACAC+TGG | 0.471134 | 2_1:-54162477 | Msa0212220:CDS |
| AACAAGAAACAGTTTGCAAA+TGG | 0.482654 | 2_1:+54161976 | None:intergenic |
| TGTGGAAGCTAAAATCGAAA+TGG | 0.487823 | 2_1:+54162927 | None:intergenic |
| GTCACGGGTGACTGTGGATC+CGG | 0.488422 | 2_1:-54162524 | Msa0212220:CDS |
| CCGATGGAAATTGTTCCGTT+AGG | 0.488627 | 2_1:-54162383 | Msa0212220:CDS |
| ATCATCATACGCATAGCTAT+AGG | 0.489323 | 2_1:+54162139 | None:intergenic |
| CATACTACTAGTGGAAATAG+TGG | 0.491376 | 2_1:-54162683 | Msa0212220:CDS |
| CTTCATCTATCAATAACTTC+AGG | 0.492218 | 2_1:-54162869 | Msa0212220:intron |
| TTTGTTACTTTCAACTCCGT+TGG | 0.499048 | 2_1:+54162302 | None:intergenic |
| ACGCATAGCTATAGGCTTGA+GGG | 0.502843 | 2_1:+54162147 | None:intergenic |
| TAAAATCGAAATGGAGAAGA+AGG | 0.505109 | 2_1:+54162936 | None:intergenic |
| GACACTGGCGAAAATCTCTC+TGG | 0.510712 | 2_1:-54162462 | Msa0212220:CDS |
| TGTAATTGTTGAATTCTCAC+GGG | 0.515013 | 2_1:+54162622 | None:intergenic |
| ATGGAAATTGTTCCGTTAGG+TGG | 0.518636 | 2_1:-54162380 | Msa0212220:CDS |
| AACCTGGCGTTATTTGAGGC+AGG | 0.519758 | 2_1:+54162065 | None:intergenic |
| GGGACGGTTGTGGCGTGCCA+GGG | 0.531682 | 2_1:-54162275 | Msa0212220:CDS |
| CCACTAGTAGTATGTGAAGC+TGG | 0.536657 | 2_1:+54162692 | None:intergenic |
| AAATGACCAGTCCATTTGGC+AGG | 0.537182 | 2_1:+54162596 | None:intergenic |
| TCCTGTGTCACGGGTGACTG+TGG | 0.545452 | 2_1:-54162530 | Msa0212220:CDS |
| GTCCTGCCTCAAATAACGCC+AGG | 0.556012 | 2_1:-54162067 | Msa0212220:CDS |
| ACAGCGCCTGCCAAATGGAC+TGG | 0.564539 | 2_1:-54162602 | Msa0212220:CDS |
| ATAGATAAGTTAACCAAAAG+CGG | 0.565123 | 2_1:+54161915 | None:intergenic |
| CCAGCTTCACATACTACTAG+TGG | 0.566702 | 2_1:-54162692 | Msa0212220:CDS |
| TAGATAAGTTAACCAAAAGC+GGG | 0.577329 | 2_1:+54161916 | None:intergenic |
| TACGCATAGCTATAGGCTTG+AGG | 0.579746 | 2_1:+54162146 | None:intergenic |
| GGACTGGTCATTTCTGGGGA+CGG | 0.586901 | 2_1:-54162586 | Msa0212220:CDS |
| TATGATGTCAGCTTAGTAGA+CGG | 0.592433 | 2_1:-54162416 | Msa0212220:CDS |
| TCCACAGTCACCCGTGACAC+AGG | 0.592636 | 2_1:+54162529 | None:intergenic |
| TAAAAGCAGCACAAGGACCC+TGG | 0.593694 | 2_1:+54162258 | None:intergenic |
| ATTAGTATTAGTATCTAACC+TGG | 0.597518 | 2_1:+54162049 | None:intergenic |
| CTAACGGAACAATTTCCATC+GGG | 0.598873 | 2_1:+54162384 | None:intergenic |
| ACAACGTGATAATCGGTGGC+CGG | 0.599855 | 2_1:+54162095 | None:intergenic |
| CCTAACGGAACAATTTCCAT+CGG | 0.605818 | 2_1:+54162383 | None:intergenic |
| GGCCGGACAAGTGAACGTGC+TGG | 0.609375 | 2_1:+54162112 | None:intergenic |
| CGGTAAGTCATGTAACAGCA+CGG | 0.610003 | 2_1:-54162354 | Msa0212220:CDS |
| TCCGGCAAAGTAGCATGTGA+TGG | 0.612293 | 2_1:-54162506 | Msa0212220:CDS |
| AATCGAAATGGAGAAGAAGG+TGG | 0.612396 | 2_1:+54162939 | None:intergenic |
| GGTAAGTCATGTAACAGCAC+GGG | 0.618640 | 2_1:-54162353 | Msa0212220:CDS |
| AATATCTTAGCATACACACT+TGG | 0.620283 | 2_1:+54162182 | None:intergenic |
| GACTTACCGGAACCACCTAA+CGG | 0.626338 | 2_1:+54162368 | None:intergenic |
| TTTGAACGCGGTATGTCCAA+CGG | 0.637039 | 2_1:-54162318 | Msa0212220:CDS |
| AATGCAACATTAGCAACCAC+CGG | 0.645956 | 2_1:-54162659 | Msa0212220:CDS |
| AAATGGACTGGTCATTTCTG+GGG | 0.649772 | 2_1:-54162590 | Msa0212220:CDS |
| TCAAAGGCGGTGATCCGCTG+CGG | 0.664709 | 2_1:+54162483 | None:intergenic |
| ATGACATTGGCTCAACCATG+TGG | 0.665026 | 2_1:+54162909 | None:intergenic |
| GTAATTGTTGAATTCTCACG+GGG | 0.675678 | 2_1:+54162623 | None:intergenic |
| TGCAAATTAAAAGCAGCACA+AGG | 0.677516 | 2_1:+54162251 | None:intergenic |
| GTAGCATGTGATGGCCGCAG+CGG | 0.682961 | 2_1:-54162497 | Msa0212220:CDS |
| AGACGGTTATAATGTCCCGA+TGG | 0.683696 | 2_1:-54162399 | Msa0212220:CDS |
| CATACCGCGTTCAAATCTGT+AGG | 0.700053 | 2_1:+54162326 | None:intergenic |
| TTGTCCTACAGATTTGAACG+CGG | 0.778811 | 2_1:-54162330 | Msa0212220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTTTTGTGATATAAAA+GGG | + | chr2_1:54161857-54161876 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTTGTGATATAAA+AGG | + | chr2_1:54161858-54161877 | None:intergenic | 15.0% |
| !! | TTATATCACAAAAGAAAATT+TGG | - | chr2_1:54161859-54161878 | Msa0212220:three_prime_UTR | 15.0% |
| !!! | TTTTCTTTTGTGATATAAAA+GGG | + | chr2_1:54161857-54161876 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTTGTGATATAAA+AGG | + | chr2_1:54161858-54161877 | None:intergenic | 15.0% |
| !! | TTATATCACAAAAGAAAATT+TGG | - | chr2_1:54161859-54161878 | Msa0212220:three_prime_UTR | 15.0% |
| !! | AGTTGAAAGTAACAAAAAAT+GGG | - | chr2_1:54162544-54162563 | Msa0212220:CDS | 20.0% |
| !! | AGTTGAAAGTAACAAAAAAT+GGG | - | chr2_1:54162544-54162563 | Msa0212220:CDS | 20.0% |
| ! | AAGAAGAACAAAAATGACAT+TGG | + | chr2_1:54161946-54161965 | None:intergenic | 25.0% |
| !!! | TCTTTTTTTCTATTTTGCAG+TGG | - | chr2_1:54162074-54162093 | Msa0212220:CDS | 25.0% |
| ! | AGTTAACAATTGCAACTATA+CGG | - | chr2_1:54162119-54162138 | Msa0212220:CDS | 25.0% |
| ! | GAGTTGAAAGTAACAAAAAA+TGG | - | chr2_1:54162543-54162562 | Msa0212220:CDS | 25.0% |
| ! | ACAAAAAACAACGTGATAAT+CGG | + | chr2_1:54162754-54162773 | None:intergenic | 25.0% |
| ! | ATTAGTATTAGTATCTAACC+TGG | + | chr2_1:54162793-54162812 | None:intergenic | 25.0% |
| ! | ATAGATAAGTTAACCAAAAG+CGG | + | chr2_1:54162927-54162946 | None:intergenic | 25.0% |
| ! | AAGAAGAACAAAAATGACAT+TGG | + | chr2_1:54161946-54161965 | None:intergenic | 25.0% |
| !!! | TCTTTTTTTCTATTTTGCAG+TGG | - | chr2_1:54162074-54162093 | Msa0212220:CDS | 25.0% |
| ! | AGTTAACAATTGCAACTATA+CGG | - | chr2_1:54162119-54162138 | Msa0212220:CDS | 25.0% |
| ! | GAGTTGAAAGTAACAAAAAA+TGG | - | chr2_1:54162543-54162562 | Msa0212220:CDS | 25.0% |
| ! | ACAAAAAACAACGTGATAAT+CGG | + | chr2_1:54162754-54162773 | None:intergenic | 25.0% |
| ! | ATTAGTATTAGTATCTAACC+TGG | + | chr2_1:54162793-54162812 | None:intergenic | 25.0% |
| ! | ATAGATAAGTTAACCAAAAG+CGG | + | chr2_1:54162927-54162946 | None:intergenic | 25.0% |
| TAAAATCGAAATGGAGAAGA+AGG | + | chr2_1:54161906-54161925 | None:intergenic | 30.0% | |
| CTTCATCTATCAATAACTTC+AGG | - | chr2_1:54161970-54161989 | Msa0212220:three_prime_UTR | 30.0% | |
| TGTAATTGTTGAATTCTCAC+GGG | + | chr2_1:54162220-54162239 | None:intergenic | 30.0% | |
| CTGTAATTGTTGAATTCTCA+CGG | + | chr2_1:54162221-54162240 | None:intergenic | 30.0% | |
| GAAAGTAACAAAAAATGGGA+CGG | - | chr2_1:54162548-54162567 | Msa0212220:CDS | 30.0% | |
| AATATCTTAGCATACACACT+TGG | + | chr2_1:54162660-54162679 | None:intergenic | 30.0% | |
| AACAAGAAACAGTTTGCAAA+TGG | + | chr2_1:54162866-54162885 | None:intergenic | 30.0% | |
| ! | TGCAAACTGTTTCTTGTTAT+CGG | - | chr2_1:54162868-54162887 | Msa0212220:intron | 30.0% |
| TAGATAAGTTAACCAAAAGC+GGG | + | chr2_1:54162926-54162945 | None:intergenic | 30.0% | |
| GCTATACAAATCTGTTATTC+TGG | - | chr2_1:54162960-54162979 | Msa0212220:five_prime_UTR | 30.0% | |
| TAAAATCGAAATGGAGAAGA+AGG | + | chr2_1:54161906-54161925 | None:intergenic | 30.0% | |
| CTTCATCTATCAATAACTTC+AGG | - | chr2_1:54161970-54161989 | Msa0212220:three_prime_UTR | 30.0% | |
| TGTAATTGTTGAATTCTCAC+GGG | + | chr2_1:54162220-54162239 | None:intergenic | 30.0% | |
| CTGTAATTGTTGAATTCTCA+CGG | + | chr2_1:54162221-54162240 | None:intergenic | 30.0% | |
| GAAAGTAACAAAAAATGGGA+CGG | - | chr2_1:54162548-54162567 | Msa0212220:CDS | 30.0% | |
| AATATCTTAGCATACACACT+TGG | + | chr2_1:54162660-54162679 | None:intergenic | 30.0% | |
| AACAAGAAACAGTTTGCAAA+TGG | + | chr2_1:54162866-54162885 | None:intergenic | 30.0% | |
| ! | TGCAAACTGTTTCTTGTTAT+CGG | - | chr2_1:54162868-54162887 | Msa0212220:intron | 30.0% |
| TAGATAAGTTAACCAAAAGC+GGG | + | chr2_1:54162926-54162945 | None:intergenic | 30.0% | |
| GCTATACAAATCTGTTATTC+TGG | - | chr2_1:54162960-54162979 | Msa0212220:five_prime_UTR | 30.0% | |
| TGTGGAAGCTAAAATCGAAA+TGG | + | chr2_1:54161915-54161934 | None:intergenic | 35.0% | |
| !!! | TTTCGATTTTAGCTTCCACA+TGG | - | chr2_1:54161915-54161934 | Msa0212220:three_prime_UTR | 35.0% |
| ! | TTTTGCAGTGGTATTTTCAG+CGG | - | chr2_1:54162086-54162105 | Msa0212220:CDS | 35.0% |
| ACAATTGCAACTATACGGTT+TGG | - | chr2_1:54162124-54162143 | Msa0212220:CDS | 35.0% | |
| CATACTACTAGTGGAAATAG+TGG | - | chr2_1:54162156-54162175 | Msa0212220:CDS | 35.0% | |
| GTAATTGTTGAATTCTCACG+GGG | + | chr2_1:54162219-54162238 | None:intergenic | 35.0% | |
| TATGATGTCAGCTTAGTAGA+CGG | - | chr2_1:54162423-54162442 | Msa0212220:CDS | 35.0% | |
| !! | TTTGTTACTTTCAACTCCGT+TGG | + | chr2_1:54162540-54162559 | None:intergenic | 35.0% |
| TGCAAATTAAAAGCAGCACA+AGG | + | chr2_1:54162591-54162610 | None:intergenic | 35.0% | |
| ATCATCATACGCATAGCTAT+AGG | + | chr2_1:54162703-54162722 | None:intergenic | 35.0% | |
| AAAAACAACGTGATAATCGG+TGG | + | chr2_1:54162751-54162770 | None:intergenic | 35.0% | |
| ! | ACTAACGATGTTCTAAACGA+TGG | - | chr2_1:54162991-54163010 | Msa0212220:five_prime_UTR | 35.0% |
| TGTGGAAGCTAAAATCGAAA+TGG | + | chr2_1:54161915-54161934 | None:intergenic | 35.0% | |
| !!! | TTTCGATTTTAGCTTCCACA+TGG | - | chr2_1:54161915-54161934 | Msa0212220:three_prime_UTR | 35.0% |
| ! | TTTTGCAGTGGTATTTTCAG+CGG | - | chr2_1:54162086-54162105 | Msa0212220:CDS | 35.0% |
| ACAATTGCAACTATACGGTT+TGG | - | chr2_1:54162124-54162143 | Msa0212220:CDS | 35.0% | |
| CATACTACTAGTGGAAATAG+TGG | - | chr2_1:54162156-54162175 | Msa0212220:CDS | 35.0% | |
| GTAATTGTTGAATTCTCACG+GGG | + | chr2_1:54162219-54162238 | None:intergenic | 35.0% | |
| TATGATGTCAGCTTAGTAGA+CGG | - | chr2_1:54162423-54162442 | Msa0212220:CDS | 35.0% | |
| !! | TTTGTTACTTTCAACTCCGT+TGG | + | chr2_1:54162540-54162559 | None:intergenic | 35.0% |
| TGCAAATTAAAAGCAGCACA+AGG | + | chr2_1:54162591-54162610 | None:intergenic | 35.0% | |
| ATCATCATACGCATAGCTAT+AGG | + | chr2_1:54162703-54162722 | None:intergenic | 35.0% | |
| AAAAACAACGTGATAATCGG+TGG | + | chr2_1:54162751-54162770 | None:intergenic | 35.0% | |
| AATCGAAATGGAGAAGAAGG+TGG | + | chr2_1:54161903-54161922 | None:intergenic | 40.0% | |
| AATGCAACATTAGCAACCAC+CGG | - | chr2_1:54162180-54162199 | Msa0212220:CDS | 40.0% | |
| !! | ACGGGGTTTTAACATGAATC+CGG | + | chr2_1:54162202-54162221 | None:intergenic | 40.0% |
| !! | CAAATGGACTGGTCATTTCT+GGG | - | chr2_1:54162248-54162267 | Msa0212220:CDS | 40.0% |
| !! | AAATGGACTGGTCATTTCTG+GGG | - | chr2_1:54162249-54162268 | Msa0212220:CDS | 40.0% |
| CAAAAACTTCTCCTGTGTCA+CGG | - | chr2_1:54162299-54162318 | Msa0212220:CDS | 40.0% | |
| AAAAACTTCTCCTGTGTCAC+GGG | - | chr2_1:54162300-54162319 | Msa0212220:CDS | 40.0% | |
| CTAACGGAACAATTTCCATC+GGG | + | chr2_1:54162458-54162477 | None:intergenic | 40.0% | |
| CCTAACGGAACAATTTCCAT+CGG | + | chr2_1:54162459-54162478 | None:intergenic | 40.0% | |
| ATGGAAATTGTTCCGTTAGG+TGG | - | chr2_1:54162459-54162478 | Msa0212220:CDS | 40.0% | |
| TTGTCCTACAGATTTGAACG+CGG | - | chr2_1:54162509-54162528 | Msa0212220:CDS | 40.0% | |
| AACAAAAAATGGGACGGTTG+TGG | - | chr2_1:54162554-54162573 | Msa0212220:CDS | 40.0% | |
| ! | TTGCAGTTTTTCTGTTGCGT+TGG | - | chr2_1:54162606-54162625 | Msa0212220:CDS | 40.0% |
| ! | TGCAGTTTTTCTGTTGCGTT+GGG | - | chr2_1:54162607-54162626 | Msa0212220:CDS | 40.0% |
| ACACTTGGCTCACAAGTATT+TGG | + | chr2_1:54162645-54162664 | None:intergenic | 40.0% | |
| ATCTAACCTGGCGTTATTTG+AGG | + | chr2_1:54162781-54162800 | None:intergenic | 40.0% | |
| !!! | TATTAGTTTGCACCCGCTTT+TGG | - | chr2_1:54162911-54162930 | Msa0212220:exon | 40.0% |
| AATCGAAATGGAGAAGAAGG+TGG | + | chr2_1:54161903-54161922 | None:intergenic | 40.0% | |
| AATGCAACATTAGCAACCAC+CGG | - | chr2_1:54162180-54162199 | Msa0212220:CDS | 40.0% | |
| !! | ACGGGGTTTTAACATGAATC+CGG | + | chr2_1:54162202-54162221 | None:intergenic | 40.0% |
| !! | CAAATGGACTGGTCATTTCT+GGG | - | chr2_1:54162248-54162267 | Msa0212220:CDS | 40.0% |
| !! | AAATGGACTGGTCATTTCTG+GGG | - | chr2_1:54162249-54162268 | Msa0212220:CDS | 40.0% |
| CAAAAACTTCTCCTGTGTCA+CGG | - | chr2_1:54162299-54162318 | Msa0212220:CDS | 40.0% | |
| AAAAACTTCTCCTGTGTCAC+GGG | - | chr2_1:54162300-54162319 | Msa0212220:CDS | 40.0% | |
| CTAACGGAACAATTTCCATC+GGG | + | chr2_1:54162458-54162477 | None:intergenic | 40.0% | |
| CCTAACGGAACAATTTCCAT+CGG | + | chr2_1:54162459-54162478 | None:intergenic | 40.0% | |
| ATGGAAATTGTTCCGTTAGG+TGG | - | chr2_1:54162459-54162478 | Msa0212220:CDS | 40.0% | |
| TTGTCCTACAGATTTGAACG+CGG | - | chr2_1:54162509-54162528 | Msa0212220:CDS | 40.0% | |
| AACAAAAAATGGGACGGTTG+TGG | - | chr2_1:54162554-54162573 | Msa0212220:CDS | 40.0% | |
| ! | TTGCAGTTTTTCTGTTGCGT+TGG | - | chr2_1:54162606-54162625 | Msa0212220:CDS | 40.0% |
| ! | TGCAGTTTTTCTGTTGCGTT+GGG | - | chr2_1:54162607-54162626 | Msa0212220:CDS | 40.0% |
| ACACTTGGCTCACAAGTATT+TGG | + | chr2_1:54162645-54162664 | None:intergenic | 40.0% | |
| ATCTAACCTGGCGTTATTTG+AGG | + | chr2_1:54162781-54162800 | None:intergenic | 40.0% | |
| !!! | TATTAGTTTGCACCCGCTTT+TGG | - | chr2_1:54162911-54162930 | Msa0212220:exon | 40.0% |
| !! | ATGACATTGGCTCAACCATG+TGG | + | chr2_1:54161933-54161952 | None:intergenic | 45.0% |
| CCACTAGTAGTATGTGAAGC+TGG | + | chr2_1:54162150-54162169 | None:intergenic | 45.0% | |
| CCAGCTTCACATACTACTAG+TGG | - | chr2_1:54162147-54162166 | Msa0212220:CDS | 45.0% | |
| !! | GGGTTTTAACATGAATCCGG+TGG | + | chr2_1:54162199-54162218 | None:intergenic | 45.0% |
| AAATGACCAGTCCATTTGGC+AGG | + | chr2_1:54162246-54162265 | None:intergenic | 45.0% | |
| CCAGAAATGACCAGTCCATT+TGG | + | chr2_1:54162250-54162269 | None:intergenic | 45.0% | |
| !! | CCAAATGGACTGGTCATTTC+TGG | - | chr2_1:54162247-54162266 | Msa0212220:CDS | 45.0% |
| ! | CGTGACACAGGAGAAGTTTT+TGG | + | chr2_1:54162301-54162320 | None:intergenic | 45.0% |
| ! | ATTTTCGCCAGTGTCAAAGG+CGG | + | chr2_1:54162372-54162391 | None:intergenic | 45.0% |
| ! | GAGATTTTCGCCAGTGTCAA+AGG | + | chr2_1:54162375-54162394 | None:intergenic | 45.0% |
| AGACGGTTATAATGTCCCGA+TGG | - | chr2_1:54162440-54162459 | Msa0212220:CDS | 45.0% | |
| CCGATGGAAATTGTTCCGTT+AGG | - | chr2_1:54162456-54162475 | Msa0212220:CDS | 45.0% | |
| ATTGTTCCGTTAGGTGGTTC+CGG | - | chr2_1:54162465-54162484 | Msa0212220:CDS | 45.0% | |
| ! | CGTGCTGTTACATGACTTAC+CGG | + | chr2_1:54162487-54162506 | None:intergenic | 45.0% |
| CGGTAAGTCATGTAACAGCA+CGG | - | chr2_1:54162485-54162504 | Msa0212220:CDS | 45.0% | |
| GGTAAGTCATGTAACAGCAC+GGG | - | chr2_1:54162486-54162505 | Msa0212220:CDS | 45.0% | |
| CATACCGCGTTCAAATCTGT+AGG | + | chr2_1:54162516-54162535 | None:intergenic | 45.0% | |
| TTTGAACGCGGTATGTCCAA+CGG | - | chr2_1:54162521-54162540 | Msa0212220:CDS | 45.0% | |
| TGTTGCGTTGGGAATCATTC+AGG | - | chr2_1:54162618-54162637 | Msa0212220:CDS | 45.0% | |
| ACGCATAGCTATAGGCTTGA+GGG | + | chr2_1:54162695-54162714 | None:intergenic | 45.0% | |
| TACGCATAGCTATAGGCTTG+AGG | + | chr2_1:54162696-54162715 | None:intergenic | 45.0% | |
| !! | ATGACATTGGCTCAACCATG+TGG | + | chr2_1:54161933-54161952 | None:intergenic | 45.0% |
| CCACTAGTAGTATGTGAAGC+TGG | + | chr2_1:54162150-54162169 | None:intergenic | 45.0% | |
| CCAGCTTCACATACTACTAG+TGG | - | chr2_1:54162147-54162166 | Msa0212220:CDS | 45.0% | |
| !! | GGGTTTTAACATGAATCCGG+TGG | + | chr2_1:54162199-54162218 | None:intergenic | 45.0% |
| AAATGACCAGTCCATTTGGC+AGG | + | chr2_1:54162246-54162265 | None:intergenic | 45.0% | |
| CCAGAAATGACCAGTCCATT+TGG | + | chr2_1:54162250-54162269 | None:intergenic | 45.0% | |
| !! | CCAAATGGACTGGTCATTTC+TGG | - | chr2_1:54162247-54162266 | Msa0212220:CDS | 45.0% |
| ! | CGTGACACAGGAGAAGTTTT+TGG | + | chr2_1:54162301-54162320 | None:intergenic | 45.0% |
| ! | ATTTTCGCCAGTGTCAAAGG+CGG | + | chr2_1:54162372-54162391 | None:intergenic | 45.0% |
| ! | GAGATTTTCGCCAGTGTCAA+AGG | + | chr2_1:54162375-54162394 | None:intergenic | 45.0% |
| AGACGGTTATAATGTCCCGA+TGG | - | chr2_1:54162440-54162459 | Msa0212220:CDS | 45.0% | |
| CCGATGGAAATTGTTCCGTT+AGG | - | chr2_1:54162456-54162475 | Msa0212220:CDS | 45.0% | |
| ATTGTTCCGTTAGGTGGTTC+CGG | - | chr2_1:54162465-54162484 | Msa0212220:CDS | 45.0% | |
| ! | CGTGCTGTTACATGACTTAC+CGG | + | chr2_1:54162487-54162506 | None:intergenic | 45.0% |
| CGGTAAGTCATGTAACAGCA+CGG | - | chr2_1:54162485-54162504 | Msa0212220:CDS | 45.0% | |
| GGTAAGTCATGTAACAGCAC+GGG | - | chr2_1:54162486-54162505 | Msa0212220:CDS | 45.0% | |
| CATACCGCGTTCAAATCTGT+AGG | + | chr2_1:54162516-54162535 | None:intergenic | 45.0% | |
| TTTGAACGCGGTATGTCCAA+CGG | - | chr2_1:54162521-54162540 | Msa0212220:CDS | 45.0% | |
| TGTTGCGTTGGGAATCATTC+AGG | - | chr2_1:54162618-54162637 | Msa0212220:CDS | 45.0% | |
| ACGCATAGCTATAGGCTTGA+GGG | + | chr2_1:54162695-54162714 | None:intergenic | 45.0% | |
| TACGCATAGCTATAGGCTTG+AGG | + | chr2_1:54162696-54162715 | None:intergenic | 45.0% | |
| CAATTACAGCGCCTGCCAAA+TGG | - | chr2_1:54162232-54162251 | Msa0212220:CDS | 50.0% | |
| TCCGGCAAAGTAGCATGTGA+TGG | - | chr2_1:54162333-54162352 | Msa0212220:CDS | 50.0% | |
| !! | GCCATCACATGCTACTTTGC+CGG | + | chr2_1:54162337-54162356 | None:intergenic | 50.0% |
| GACACTGGCGAAAATCTCTC+TGG | - | chr2_1:54162377-54162396 | Msa0212220:CDS | 50.0% | |
| GACTTACCGGAACCACCTAA+CGG | + | chr2_1:54162474-54162493 | None:intergenic | 50.0% | |
| TAAAAGCAGCACAAGGACCC+TGG | + | chr2_1:54162584-54162603 | None:intergenic | 50.0% | |
| ACAACGTGATAATCGGTGGC+CGG | + | chr2_1:54162747-54162766 | None:intergenic | 50.0% | |
| ! | AACCTGGCGTTATTTGAGGC+AGG | + | chr2_1:54162777-54162796 | None:intergenic | 50.0% |
| CAATTACAGCGCCTGCCAAA+TGG | - | chr2_1:54162232-54162251 | Msa0212220:CDS | 50.0% | |
| TCCGGCAAAGTAGCATGTGA+TGG | - | chr2_1:54162333-54162352 | Msa0212220:CDS | 50.0% | |
| !! | GCCATCACATGCTACTTTGC+CGG | + | chr2_1:54162337-54162356 | None:intergenic | 50.0% |
| GACACTGGCGAAAATCTCTC+TGG | - | chr2_1:54162377-54162396 | Msa0212220:CDS | 50.0% | |
| GACTTACCGGAACCACCTAA+CGG | + | chr2_1:54162474-54162493 | None:intergenic | 50.0% | |
| TAAAAGCAGCACAAGGACCC+TGG | + | chr2_1:54162584-54162603 | None:intergenic | 50.0% | |
| ACAACGTGATAATCGGTGGC+CGG | + | chr2_1:54162747-54162766 | None:intergenic | 50.0% | |
| ! | AACCTGGCGTTATTTGAGGC+AGG | + | chr2_1:54162777-54162796 | None:intergenic | 50.0% |
| !! | GGACTGGTCATTTCTGGGGA+CGG | - | chr2_1:54162253-54162272 | Msa0212220:CDS | 55.0% |
| GACCAGCACGTTCACTTGTC+CGG | - | chr2_1:54162725-54162744 | Msa0212220:CDS | 55.0% | |
| GTCCTGCCTCAAATAACGCC+AGG | - | chr2_1:54162772-54162791 | Msa0212220:intron | 55.0% | |
| !! | GGACTGGTCATTTCTGGGGA+CGG | - | chr2_1:54162253-54162272 | Msa0212220:CDS | 55.0% |
| GACCAGCACGTTCACTTGTC+CGG | - | chr2_1:54162725-54162744 | Msa0212220:CDS | 55.0% | |
| GTCCTGCCTCAAATAACGCC+AGG | - | chr2_1:54162772-54162791 | Msa0212220:intron | 55.0% | |
| ACAGCGCCTGCCAAATGGAC+TGG | - | chr2_1:54162237-54162256 | Msa0212220:CDS | 60.0% | |
| TCCTGTGTCACGGGTGACTG+TGG | - | chr2_1:54162309-54162328 | Msa0212220:CDS | 60.0% | |
| TCCACAGTCACCCGTGACAC+AGG | + | chr2_1:54162313-54162332 | None:intergenic | 60.0% | |
| GTCACGGGTGACTGTGGATC+CGG | - | chr2_1:54162315-54162334 | Msa0212220:CDS | 60.0% | |
| GTAGCATGTGATGGCCGCAG+CGG | - | chr2_1:54162342-54162361 | Msa0212220:CDS | 60.0% | |
| TCAAAGGCGGTGATCCGCTG+CGG | + | chr2_1:54162359-54162378 | None:intergenic | 60.0% | |
| CGGATCACCGCCTTTGACAC+TGG | - | chr2_1:54162362-54162381 | Msa0212220:CDS | 60.0% | |
| ACAGCGCCTGCCAAATGGAC+TGG | - | chr2_1:54162237-54162256 | Msa0212220:CDS | 60.0% | |
| TCCTGTGTCACGGGTGACTG+TGG | - | chr2_1:54162309-54162328 | Msa0212220:CDS | 60.0% | |
| TCCACAGTCACCCGTGACAC+AGG | + | chr2_1:54162313-54162332 | None:intergenic | 60.0% | |
| GTCACGGGTGACTGTGGATC+CGG | - | chr2_1:54162315-54162334 | Msa0212220:CDS | 60.0% | |
| GTAGCATGTGATGGCCGCAG+CGG | - | chr2_1:54162342-54162361 | Msa0212220:CDS | 60.0% | |
| TCAAAGGCGGTGATCCGCTG+CGG | + | chr2_1:54162359-54162378 | None:intergenic | 60.0% | |
| CGGATCACCGCCTTTGACAC+TGG | - | chr2_1:54162362-54162381 | Msa0212220:CDS | 60.0% | |
| GGCCGGACAAGTGAACGTGC+TGG | + | chr2_1:54162730-54162749 | None:intergenic | 65.0% | |
| GGCCGGACAAGTGAACGTGC+TGG | + | chr2_1:54162730-54162749 | None:intergenic | 65.0% | |
| TGGGACGGTTGTGGCGTGCC+AGG | - | chr2_1:54162563-54162582 | Msa0212220:CDS | 70.0% | |
| GGGACGGTTGTGGCGTGCCA+GGG | - | chr2_1:54162564-54162583 | Msa0212220:CDS | 70.0% | |
| TGGGACGGTTGTGGCGTGCC+AGG | - | chr2_1:54162563-54162582 | Msa0212220:CDS | 70.0% | |
| GGGACGGTTGTGGCGTGCCA+GGG | - | chr2_1:54162564-54162583 | Msa0212220:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 54161850 | 54163011 | 54161850 | ID=Msa0212220;Name=Msa0212220 |
| chr2_1 | mRNA | 54161850 | 54163011 | 54161850 | ID=Msa0212220-mRNA-1;Parent=Msa0212220;Name=Msa0212220-mRNA-1;_AED=0.03;_eAED=0.03;_QI=84|1|1|1|1|1|2|154|273 |
| chr2_1 | exon | 54161850 | 54162767 | 54161850 | ID=Msa0212220-mRNA-1:exon:14996;Parent=Msa0212220-mRNA-1 |
| chr2_1 | exon | 54162870 | 54163011 | 54162870 | ID=Msa0212220-mRNA-1:exon:14995;Parent=Msa0212220-mRNA-1 |
| chr2_1 | five_prime_UTR | 54162928 | 54163011 | 54162928 | ID=Msa0212220-mRNA-1:five_prime_utr;Parent=Msa0212220-mRNA-1 |
| chr2_1 | CDS | 54162870 | 54162927 | 54162870 | ID=Msa0212220-mRNA-1:cds;Parent=Msa0212220-mRNA-1 |
| chr2_1 | CDS | 54162004 | 54162767 | 54162004 | ID=Msa0212220-mRNA-1:cds;Parent=Msa0212220-mRNA-1 |
| chr2_1 | three_prime_UTR | 54161850 | 54162003 | 54161850 | ID=Msa0212220-mRNA-1:three_prime_utr;Parent=Msa0212220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
