AlfalfaGEDB | Msa0329560

M. sativa cultivar zhongmu-4 / Msa0329560

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00314.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0329560	XP_013464289.1	88.716	257	27	2	1	256	1	256	1.45e-156	473

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0329560	sp\|Q5DWG1\|CRJ35_CRYJA	51.339	224	101	4	26	249	25	240	1.02e-77	238

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014790	Msa0329560	0.824595	7.414680e-54	-8.615850e-47
Msa0043370	Msa0329560	0.815612	8.457925e-52	-8.615850e-47
Msa0050240	Msa0329560	0.818043	2.408713e-52	-8.615850e-47
Msa0063100	Msa0329560	0.817178	3.772959e-52	-8.615850e-47
Msa0063170	Msa0329560	0.835606	1.521946e-56	-8.615850e-47
Msa0212190	Msa0329560	0.921128	5.321688e-88	-8.615850e-47
Msa0212220	Msa0329560	0.965705	5.949362e-125	-8.615850e-47
Msa0225370	Msa0329560	0.812211	4.752423e-51	-8.615850e-47
Msa0266380	Msa0329560	0.829148	6.052843e-55	-8.615850e-47
Msa0291240	Msa0329560	0.809279	2.046513e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0329560	MtrunA17_Chr2g0311521	88.716	257	27	2	1	256	1	256	1.33e-160	473
Msa0329560	MtrunA17_Chr2g0311551	80.545	257	45	4	1	256	1	253	6.37e-136	408
Msa0329560	MtrunA17_Chr1g0156711	52.290	262	114	5	7	263	7	262	1.06e-92	276
Msa0329560	MtrunA17_Chr3g0142781	53.629	248	108	4	8	252	11	254	5.41e-90	270
Msa0329560	MtrunA17_Chr2g0311561	56.223	233	98	2	23	254	10	239	2.91e-89	266
Msa0329560	MtrunA17_Chr8g0352471	53.219	233	105	2	19	250	21	250	2.27e-87	263
Msa0329560	MtrunA17_Chr2g0311531	55.686	255	78	8	21	269	24	249	1.16e-83	251
Msa0329560	MtrunA17_Chr8g0371781	51.020	245	109	3	23	260	27	267	3.48e-83	251
Msa0329560	MtrunA17_Chr8g0357311	51.709	234	108	3	22	253	24	254	4.94e-83	249
Msa0329560	MtrunA17_Chr4g0037351	50.199	251	118	3	1	247	1	248	1.55e-81	248

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0329560	AT1G75800.1	50.388	258	119	4	1	253	1	254	1.02e-86	262
Msa0329560	AT1G20030.2	52.321	237	105	3	21	252	17	250	1.53e-84	256
Msa0329560	AT1G20030.1	52.119	236	105	3	22	252	1	233	6.26e-84	254
Msa0329560	AT2G17860.1	54.506	233	95	5	23	248	22	250	1.64e-81	246
Msa0329560	AT4G36010.1	52.743	237	102	4	21	250	20	253	1.48e-78	240
Msa0329560	AT4G36010.2	52.743	237	102	4	21	250	20	253	1.48e-78	240
Msa0329560	AT4G24180.6	49.200	250	112	5	5	248	17	257	1.32e-77	236
Msa0329560	AT4G24180.1	49.200	250	112	5	5	248	17	257	3.59e-77	237
Msa0329560	AT4G24180.5	48.400	250	109	6	5	248	17	252	1.89e-74	228
Msa0329560	AT4G24180.2	48.400	250	109	6	5	248	17	252	6.54e-74	228

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Find 96 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGACCAGTCCATTTGGC+AGG	0.537182	2_4:+43319732	None:intergenic
AAATGGACTGGTCATTTCTG+GGG	0.649772	2_4:-43319726	Msa0329560:CDS
AACAAGAAACAGTTTGCAAA+TGG	0.482654	2_4:+43319112	None:intergenic
AACAGAGAGAAATAACAGAC+AGG	0.601735	2_4:-43318891	Msa0329560:three_prime_UTR
AACCTGGCATTATTTGAGGC+AGG	0.522017	2_4:+43319201	None:intergenic
AATATCTTAGCATACACACT+TGG	0.620283	2_4:+43319318	None:intergenic
AATCGAAATGGAGAAGAAGG+TGG	0.612396	2_4:+43320075	None:intergenic
AATGCAACATTAGCAACCAC+CGG	0.645956	2_4:-43319795	Msa0329560:CDS
ACAACGTGATAATCGGTGGC+CGG	0.599855	2_4:+43319231	None:intergenic
ACAATTGCAACTATACGGTT+TGG	0.427382	2_4:-43319851	Msa0329560:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAATCGAAATGGAGAAGA+AGG	+	chr2_4:43318730-43318749	None:intergenic	30.0%
CTTCATCTATCAATAACTTC+AGG	-	chr2_4:43318794-43318813	Msa0329560:three_prime_UTR	30.0%
TGTAATTGTTGAATTCTCAC+GGG	+	chr2_4:43319044-43319063	None:intergenic	30.0%
CTGTAATTGTTGAATTCTCA+CGG	+	chr2_4:43319045-43319064	None:intergenic	30.0%
GAAAGTAACAAAAAATGGGA+CGG	-	chr2_4:43319372-43319391	Msa0329560:CDS	30.0%
AATATCTTAGCATACACACT+TGG	+	chr2_4:43319484-43319503	None:intergenic	30.0%
AACAAGAAACAGTTTGCAAA+TGG	+	chr2_4:43319690-43319709	None:intergenic	30.0%
TAGATAAGTTAACCAAAAGC+GGG	+	chr2_4:43319750-43319769	None:intergenic	30.0%
GCTATACAAATCTGTTATTC+TGG	-	chr2_4:43319784-43319803	Msa0329560:CDS	30.0%
GAGAAATTGTTAACCAAGTT+CGG	-	chr2_4:43319947-43319966	Msa0329560:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	43318674	43320147	43318674	ID=Msa0329560;Name=Msa0329560
chr2_4	mRNA	43318674	43320147	43318674	ID=Msa0329560-mRNA-1;Parent=Msa0329560;Name=Msa0329560-mRNA-1;_AED=0.03;_eAED=0.03;_QI=84\|1\|1\|1\|1\|1\|2\|466\|273
chr2_4	exon	43318674	43319903	43318674	ID=Msa0329560-mRNA-1:exon:13204;Parent=Msa0329560-mRNA-1
chr2_4	exon	43320006	43320147	43320006	ID=Msa0329560-mRNA-1:exon:13203;Parent=Msa0329560-mRNA-1
chr2_4	five_prime_UTR	43320064	43320147	43320064	ID=Msa0329560-mRNA-1:five_prime_utr;Parent=Msa0329560-mRNA-1
chr2_4	CDS	43320006	43320063	43320006	ID=Msa0329560-mRNA-1:cds;Parent=Msa0329560-mRNA-1
chr2_4	CDS	43319140	43319903	43319140	ID=Msa0329560-mRNA-1:cds;Parent=Msa0329560-mRNA-1
chr2_4	three_prime_UTR	43318674	43319139	43318674	ID=Msa0329560-mRNA-1:three_prime_utr;Parent=Msa0329560-mRNA-1

Gene Sequence

>Msa0329560

ATGGTTGAGCCAATGTCATTTTTGTTCTTCTTCACACTTCATCTATCAATAACTTCAGTGGTATTTTCAGCGGAATTCACTATAGTTAACAATTGCAACTATACGGTTTGGCCAGCTTCACATACTACTAGTGGAAATAGTGGCAATGCAACATTAGCAACCACCGGATTCATGTTAAAACCCCGTGAGAATTCAACAATTACAGCGCCTGCCAAATGGACTGGTCATTTCTGGGGACGGACTCTCTGTACAGATTCTGTCTCCAAAAACTTCTCCTGTGTCACGGGTGACTGTGGATCCGGCAAAGTAGCATGTGATGGCCGCAGCGGATCACCGCCTTTGACACTGGCGAAAATCTCTCTGGACAGTGCTAACAATCAAGATTTTTATGATGTCAGCTTAGTAGACGGTTATAATGTCCCGATGGAAATTGTTCCGTTAGGTGGTTCCGGTAAGTCATGTAACAGCACGGGTTGTCCTACAGATTTGAACGCGGTATGTCCAACGGAGTTGAAAGTAACAAAAAATGGGACGGTTGTGGCGTGCCAGGGTCCTTGTGCTGCTTTTAATTTGCAGTTTTTCTGTTGCGTTGGGAATCATTCAGGTCCAAATACTTGTGAGCCAAGTGTGTATGCTAAGATATTCAAGACAACGTGCCCTCAAGCCTATAGCTATGCGTATGATGATCAGACCAGCACGTTCACTTGTCCGGCCACCGATTATCACGTTGTTTTTTGTCCTGCCTCAAATAATGCCAGGTTAGATACTAATACTAATAATAGTTCAAAATATTTTTCATGTCATTTTATATTTATAAAATAG

Protein sequence

>Msa0329560

MVEPMSFLFFFTLHLSITSVVFSAEFTIVNNCNYTVWPASHTTSGNSGNATLATTGFMLKPRENSTITAPAKWTGHFWGRTLCTDSVSKNFSCVTGDCGSGKVACDGRSGSPPLTLAKISLDSANNQDFYDVSLVDGYNVPMEIVPLGGSGKSCNSTGCPTDLNAVCPTELKVTKNGTVVACQGPCAAFNLQFFCCVGNHSGPNTCEPSVYAKIFKTTCPQAYSYAYDDQTSTFTCPATDYHVVFCPASNNARLDTNTNNSSKYFSCHFIFIK*