Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832940 | XP_003611167.1 | 98.514 | 471 | 6 | 1 | 1 | 470 | 1 | 471 | 0.0 | 965 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832940 | sp|P54873|HMCS_ARATH | 76.923 | 468 | 98 | 2 | 5 | 470 | 2 | 461 | 0.0 | 774 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832940 | G7KER8 | 98.514 | 471 | 6 | 1 | 1 | 470 | 1 | 471 | 0.0 | 965 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044170 | Msa0832940 | 0.807408 | 5.130149e-50 | -8.615850e-47 |
| Msa0090850 | Msa0832940 | 0.844628 | 6.718877e-59 | -8.615850e-47 |
| Msa0753920 | Msa0832940 | 0.958783 | 9.999640e-117 | -8.615850e-47 |
| Msa0807010 | Msa0832940 | 0.995744 | 1.973202e-219 | -8.615850e-47 |
| Msa0832940 | Msa1029850 | 0.816140 | 6.445584e-52 | -8.615850e-47 |
| Msa0832940 | Msa1132990 | 0.917790 | 3.453629e-86 | -8.615850e-47 |
| Msa0832940 | Msa1198050 | 0.816100 | 6.579864e-52 | -8.615850e-47 |
| Msa0832940 | Msa1200500 | 0.853200 | 2.795854e-61 | -8.615850e-47 |
| Msa0832940 | Msa1251740 | 0.808158 | 3.552942e-50 | -8.615850e-47 |
| Msa0832940 | Msa1253520 | 0.844162 | 8.965529e-59 | -8.615850e-47 |
| Msa0832940 | Msa1293840 | 0.851841 | 6.822461e-61 | -8.615850e-47 |
| Msa0189720 | Msa0832940 | 0.818179 | 2.243140e-52 | -8.615850e-47 |
| Msa0212300 | Msa0832940 | 0.811021 | 8.622027e-51 | -8.615850e-47 |
| Msa0232100 | Msa0832940 | 0.818392 | 2.007711e-52 | -8.615850e-47 |
| Msa0484200 | Msa0832940 | 0.840249 | 9.744080e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832940 | MtrunA17_Chr5g0398151 | 98.514 | 471 | 6 | 1 | 1 | 470 | 1 | 471 | 0.0 | 965 |
| Msa0832940 | MtrunA17_Chr6g0474311 | 79.596 | 446 | 91 | 0 | 7 | 452 | 8 | 453 | 0.0 | 775 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832940 | AT4G11820.2 | 76.923 | 468 | 98 | 2 | 5 | 470 | 2 | 461 | 0.0 | 774 |
| Msa0832940 | AT4G11820.3 | 75.604 | 414 | 91 | 2 | 59 | 470 | 1 | 406 | 0.0 | 670 |
| Msa0832940 | AT4G11820.1 | 75.604 | 414 | 91 | 2 | 59 | 470 | 1 | 406 | 0.0 | 670 |
Find 125 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTGCTTTCAAAAGAAAT+AGG | 0.210965 | 5_4:-6120359 | None:intergenic |
| TCTATGCAACGAACAATAAA+TGG | 0.242624 | 5_4:+6122835 | Msa0832940:three_prime_UTR |
| GTCTGGAACAAACAGAAATA+TGG | 0.263458 | 5_4:+6119985 | Msa0832940:intron |
| GCAATGTTTGACAAACTAAA+TGG | 0.286875 | 5_4:-6122149 | None:intergenic |
| CTTTGTTCAATTGTGTCAAT+TGG | 0.290856 | 5_4:+6120064 | Msa0832940:CDS |
| ATTTGCTTTCAAAAGAAATA+GGG | 0.301513 | 5_4:-6120358 | None:intergenic |
| GCTGCTATTGCTATGCTAAT+TGG | 0.307008 | 5_4:+6120326 | Msa0832940:CDS |
| GTCTGAACTACCTTGTTATA+AGG | 0.329972 | 5_4:-6121308 | None:intergenic |
| TGATTATGATTGTAGCTCTA+AGG | 0.346847 | 5_4:+6121614 | Msa0832940:intron |
| TGCTTTGGTATCAAAGTAGA+TGG | 0.354413 | 5_4:-6121876 | None:intergenic |
| TCATCGGATAAAGTTGTAAA+AGG | 0.369541 | 5_4:-6121663 | None:intergenic |
| AAGCAAGGACAGCAGCCTTT+TGG | 0.374475 | 5_4:+6122684 | Msa0832940:CDS |
| CTTGCTTGTTACATAATCCT+TGG | 0.405156 | 5_4:-6122668 | None:intergenic |
| CCCTCCTAACTGCGTTCAAC+AGG | 0.405990 | 5_4:+6118709 | Msa0832940:CDS |
| CTGCATCAAGAATGACTTGA+TGG | 0.406438 | 5_4:-6119532 | None:intergenic |
| GTCACAGGTGCTAGGAAATC+TGG | 0.409006 | 5_4:+6123577 | Msa0832940:three_prime_UTR |
| ATAGAGGCTTTGCAACTTGT+TGG | 0.416177 | 5_4:-6121836 | None:intergenic |
| CTCATGATGGTGCGAGTAAA+GGG | 0.416361 | 5_4:+6119121 | Msa0832940:CDS |
| TCCAGACGACCAATCTGTTT+AGG | 0.418016 | 5_4:-6119474 | None:intergenic |
| TCCTAAACAGATTGGTCGTC+TGG | 0.418362 | 5_4:+6119473 | Msa0832940:CDS |
| TAGAGGCTTTGCAACTTGTT+GGG | 0.419718 | 5_4:-6121835 | None:intergenic |
| CATTGAAACACTGAAGCTAA+TGG | 0.420891 | 5_4:+6122630 | Msa0832940:CDS |
| GGATGCAAATGCTGCATAGA+TGG | 0.426955 | 5_4:-6121922 | None:intergenic |
| GTTACCTGTTGAACGCAGTT+AGG | 0.430235 | 5_4:-6118713 | None:intergenic |
| ATTCTTGATGCAGATCTTTG+AGG | 0.432466 | 5_4:+6119542 | Msa0832940:CDS |
| ATTCCAACGTTCTTTGCTGC+TGG | 0.435491 | 5_4:-6118665 | None:intergenic |
| TACATGTTACCAACTTGCTT+TGG | 0.440980 | 5_4:-6121891 | None:intergenic |
| GTGAAGGGTAGTCTTTGTAT+TGG | 0.443511 | 5_4:+6122876 | Msa0832940:three_prime_UTR |
| CTTTCTCTTGTTCAAAGGAA+AGG | 0.445132 | 5_4:-6118627 | None:intergenic |
| TCAAAAGAAATAGGGGCATC+AGG | 0.453354 | 5_4:-6120350 | None:intergenic |
| CAAATTGAGGGGAAGTCATA+TGG | 0.453589 | 5_4:+6120376 | Msa0832940:CDS |
| CAAGAGAAAGAATCAAGAAA+TGG | 0.453610 | 5_4:+6118640 | Msa0832940:exon |
| TCATAATAGTTGTGAAGCTC+TGG | 0.460821 | 5_4:+6123079 | Msa0832940:three_prime_UTR |
| GCTCCTCCGGTAGGTCGAGC+AGG | 0.463854 | 5_4:-6120302 | None:intergenic |
| AATTCATGGGATGGACGTTA+TGG | 0.464557 | 5_4:+6120096 | Msa0832940:CDS |
| AGCAATAGCAGCAGCTCCTC+CGG | 0.467184 | 5_4:-6120315 | None:intergenic |
| AGTAAAGGGAAATATACAAT+TGG | 0.468493 | 5_4:+6119135 | Msa0832940:CDS |
| TTTGATGCAGGAAGCATTGG+AGG | 0.489358 | 5_4:+6119098 | Msa0832940:intron |
| TTTGTTCAATTGTGTCAATT+GGG | 0.489475 | 5_4:+6120065 | Msa0832940:CDS |
| TGTACCTTCTCATCGTATAG+AGG | 0.489750 | 5_4:-6121852 | None:intergenic |
| ATTGGGTGGAGAGCAATTCA+TGG | 0.491422 | 5_4:+6120082 | Msa0832940:CDS |
| CTTTCTCAGGTCTATGCTGA+AGG | 0.492679 | 5_4:+6120278 | Msa0832940:intron |
| ATGACGAGAGCTACCAAAGC+CGG | 0.493439 | 5_4:+6121682 | Msa0832940:CDS |
| TATGGAAATACTGATATTGA+AGG | 0.498987 | 5_4:+6120003 | Msa0832940:CDS |
| GCTCATGATGGTGCGAGTAA+AGG | 0.499177 | 5_4:+6119120 | Msa0832940:CDS |
| GAAGGTCCTGCTCGACCTAC+CGG | 0.502083 | 5_4:+6120296 | Msa0832940:CDS |
| TGGTCTTCAGCGACTTCTTG+AGG | 0.503836 | 5_4:+6121511 | Msa0832940:CDS |
| TTTCAGCAACATCCATCACT+TGG | 0.507070 | 5_4:-6122172 | None:intergenic |
| AGGAAAACATTGTGGCAGTT+AGG | 0.515627 | 5_4:-6122103 | None:intergenic |
| TGATTCTTTCTCTTGTTCAA+AGG | 0.516266 | 5_4:-6118632 | None:intergenic |
| TCGGTGAGAAAGAATGTGCC+TGG | 0.516526 | 5_4:-6122709 | None:intergenic |
| TTTGCTTTCAAAAGAAATAG+GGG | 0.519392 | 5_4:-6120357 | None:intergenic |
| GCGACTTCTTGAGGAATCCC+AGG | 0.520791 | 5_4:+6121520 | Msa0832940:CDS |
| AGTGTTTCAATGAACTTCTG+TGG | 0.521063 | 5_4:-6122619 | None:intergenic |
| CCAAAGCCGGGATCTTGAAA+AGG | 0.524815 | 5_4:+6121695 | Msa0832940:CDS |
| ACCTGTTGAACGCAGTTAGG+AGG | 0.526299 | 5_4:-6118710 | None:intergenic |
| GGGTATTCACTAGCAAGGTC+AGG | 0.527013 | 5_4:-6120422 | None:intergenic |
| AAAAGTAAAGTGTCCTACCT+TGG | 0.527107 | 5_4:+6123607 | Msa0832940:three_prime_UTR |
| TAGTTAAATGCGCAGAAGGG+TGG | 0.527513 | 5_4:-6123632 | None:intergenic |
| TTTAGTTTCACGTAATTGCA+AGG | 0.530355 | 5_4:-6122123 | None:intergenic |
| TCAACTAATGCTTGCTATGG+AGG | 0.531555 | 5_4:+6120033 | Msa0832940:CDS |
| AAGATAGTTAAATGCGCAGA+AGG | 0.534540 | 5_4:-6123636 | None:intergenic |
| GATTCAACTAATGCTTGCTA+TGG | 0.539495 | 5_4:+6120030 | Msa0832940:CDS |
| ATATTATTCTCATACGGAAG+TGG | 0.541033 | 5_4:+6122080 | Msa0832940:CDS |
| TGCGCAGAAGGGTGGGTCCA+AGG | 0.543375 | 5_4:-6123624 | None:intergenic |
| GAGATCGATCCTAAACAGAT+TGG | 0.548622 | 5_4:+6119465 | Msa0832940:CDS |
| TGACGAGAGCTACCAAAGCC+GGG | 0.549767 | 5_4:+6121683 | Msa0832940:CDS |
| GGGAAATATACAATTGGACT+TGG | 0.552530 | 5_4:+6119141 | Msa0832940:CDS |
| GAGGTTACCAAAGAAAAGCT+TGG | 0.555142 | 5_4:+6121639 | Msa0832940:CDS |
| CAGAAGGGTGGGTCCAAGGT+AGG | 0.556620 | 5_4:-6123620 | None:intergenic |
| TGATTGTAGCTCTAAGGATG+AGG | 0.558354 | 5_4:+6121620 | Msa0832940:intron |
| GGTCACAGGCTCACAGTCAC+AGG | 0.563060 | 5_4:+6123562 | Msa0832940:three_prime_UTR |
| GTCAAACATTGCCCAAGTGA+TGG | 0.563325 | 5_4:+6122160 | Msa0832940:CDS |
| AGTTAAATGCGCAGAAGGGT+GGG | 0.563838 | 5_4:-6123631 | None:intergenic |
| ACAGACAAACCGTTGACTGC+AGG | 0.565692 | 5_4:-6122790 | None:intergenic |
| AACAGGCCCTATATCTCCAT+TGG | 0.566245 | 5_4:+6123523 | Msa0832940:intron |
| ACTATCACTATCTATGCCAA+TGG | 0.567138 | 5_4:-6123539 | None:intergenic |
| CACTGAAGCTAATGGAACAT+AGG | 0.569121 | 5_4:+6122638 | Msa0832940:CDS |
| TGCATAGAATCTACGATACA+TGG | 0.569318 | 5_4:-6122740 | None:intergenic |
| GTCAACGGTTTGTCTGTCAA+TGG | 0.569594 | 5_4:+6122796 | Msa0832940:CDS |
| TGAATAAGAAAGAGTTGCCA+AGG | 0.573450 | 5_4:-6118565 | None:intergenic |
| TTCAGCAACATCCATCACTT+GGG | 0.574544 | 5_4:-6122171 | None:intergenic |
| TAACAAACAAACAAACACCT+TGG | 0.580987 | 5_4:+6118548 | Msa0832940:five_prime_UTR |
| AGGGTGATATTATTCTCATA+CGG | 0.581841 | 5_4:+6122074 | Msa0832940:CDS |
| GGAACATAGGTATGGTGCCA+AGG | 0.583616 | 5_4:+6122651 | Msa0832940:CDS |
| AAGCTAATGGAACATAGGTA+TGG | 0.584877 | 5_4:+6122643 | Msa0832940:CDS |
| TTCACAAACATGTTACCTCA+TGG | 0.585332 | 5_4:+6120714 | Msa0832940:CDS |
| TAAGCTCCACATTGAGTGAA+GGG | 0.586328 | 5_4:+6122861 | Msa0832940:three_prime_UTR |
| CCTGTTGAACGCAGTTAGGA+GGG | 0.587798 | 5_4:-6118709 | None:intergenic |
| TTTGTGCTGTAGGTTGTCGA+CGG | 0.588804 | 5_4:+6120685 | Msa0832940:intron |
| CTACCTTGTTATAAGGAGAG+TGG | 0.592935 | 5_4:-6121301 | None:intergenic |
| GCTTTGGTAGCTCTCGTCAT+CGG | 0.595190 | 5_4:-6121679 | None:intergenic |
| AGAATGTGCCTGGAGCCAAA+AGG | 0.595474 | 5_4:-6122699 | None:intergenic |
| ATTGGCATAGATAGTGATAG+TGG | 0.595667 | 5_4:+6123541 | Msa0832940:three_prime_UTR |
| AATTTGACTCCTGCAGTCAA+CGG | 0.595715 | 5_4:+6122781 | Msa0832940:CDS |
| GTGGAGAGCAATTCATGGGA+TGG | 0.595820 | 5_4:+6120087 | Msa0832940:CDS |
| TAGATAGTGATAGTGGTCAC+AGG | 0.596566 | 5_4:+6123548 | Msa0832940:three_prime_UTR |
| CAGATTGGTCGTCTGGAAGT+CGG | 0.598190 | 5_4:+6119480 | Msa0832940:CDS |
| TTAAGCTCCACATTGAGTGA+AGG | 0.599286 | 5_4:+6122860 | Msa0832940:three_prime_UTR |
| TTGGGTGGAGAGCAATTCAT+GGG | 0.604306 | 5_4:+6120083 | Msa0832940:CDS |
| ACTTTGATACCAAAGCAAGT+TGG | 0.615714 | 5_4:+6121882 | Msa0832940:CDS |
| ACGATACATGGTATCGACTT+CGG | 0.616243 | 5_4:-6122728 | None:intergenic |
| GTTCAATTGTGTCAATTGGG+TGG | 0.616456 | 5_4:+6120068 | Msa0832940:CDS |
| GTTTCAATGAACTTCTGTGG+AGG | 0.619312 | 5_4:-6122616 | None:intergenic |
| GAAGCATTGGAGGCTCATGA+TGG | 0.621839 | 5_4:+6119108 | Msa0832940:CDS |
| ATTCCACTCTCCTTATAACA+AGG | 0.625771 | 5_4:+6121298 | Msa0832940:CDS |
| TGCAGATATGAGAAACACGA+GGG | 0.625881 | 5_4:+6121239 | Msa0832940:intron |
| AAAGCCTCTATACGATGAGA+AGG | 0.630768 | 5_4:+6121848 | Msa0832940:CDS |
| GGCTCACAGTCACAGGTGCT+AGG | 0.631640 | 5_4:+6123569 | Msa0832940:three_prime_UTR |
| GGTCCTGCTCGACCTACCGG+AGG | 0.636919 | 5_4:+6120299 | Msa0832940:CDS |
| TGACCTTGCTAGTGAATACC+CGG | 0.639253 | 5_4:+6120424 | Msa0832940:CDS |
| TTGCATCTGCAGTTTGACAG+TGG | 0.639309 | 5_4:+6119419 | Msa0832940:intron |
| TTACCGGGTATTCACTAGCA+AGG | 0.643611 | 5_4:-6120427 | None:intergenic |
| AGATAGTTAAATGCGCAGAA+GGG | 0.644229 | 5_4:-6123635 | None:intergenic |
| GCACCAGCAGCAAAGAACGT+TGG | 0.645271 | 5_4:+6118662 | Msa0832940:CDS |
| TTGAAGATGTCATCTCAATG+AGG | 0.649419 | 5_4:+6119193 | Msa0832940:CDS |
| AGACTACCCTTCACTCAATG+TGG | 0.649805 | 5_4:-6122867 | None:intergenic |
| CAAGGATTATGTAACAAGCA+AGG | 0.651946 | 5_4:+6122669 | Msa0832940:CDS |
| ATAGCAGCAGCTCCTCCGGT+AGG | 0.656075 | 5_4:-6120311 | None:intergenic |
| AAAGTTGAAGTCAAGACATG+AGG | 0.659927 | 5_4:+6122193 | Msa0832940:CDS |
| TTGCAGATATGAGAAACACG+AGG | 0.684755 | 5_4:+6121238 | Msa0832940:intron |
| TAATTGCAAGGAAAACATTG+TGG | 0.695304 | 5_4:-6122111 | None:intergenic |
| ATTGACACAATTGAACAAAG+CGG | 0.706527 | 5_4:-6120061 | None:intergenic |
| AAATGCTGCATAGATGGACG+CGG | 0.723317 | 5_4:-6121916 | None:intergenic |
| AGCAAGTATCAAGAGCCATG+AGG | 0.727431 | 5_4:-6120729 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTTATTTTTTTGTC+TGG | + | chr5_4:6119968-6119987 | Msa0832940:intron | 10.0% |
| !! | ATGAAAAATATTAATTAACT+AGG | + | chr5_4:6120816-6120835 | Msa0832940:intron | 10.0% |
| !! | TGAAAAATATTAATTAACTA+GGG | + | chr5_4:6120817-6120836 | Msa0832940:intron | 10.0% |
| !!! | AGTCAAAAATTTATATTTTT+AGG | + | chr5_4:6123011-6123030 | Msa0832940:three_prime_UTR | 10.0% |
| !!! | GTTTTTTCACTTTTTAATTA+AGG | + | chr5_4:6119062-6119081 | Msa0832940:intron | 15.0% |
| !! | GAAAAATATTAATTAACTAG+GGG | + | chr5_4:6120818-6120837 | Msa0832940:intron | 15.0% |
| !! | AAAAATATTAATTAACTAGG+GGG | + | chr5_4:6120819-6120838 | Msa0832940:intron | 15.0% |
| !! | CAAAAACATAATTAGATATT+TGG | - | chr5_4:6121221-6121240 | None:intergenic | 15.0% |
| !! | ATGATTGTAATTTAGTATTT+CGG | + | chr5_4:6121428-6121447 | Msa0832940:intron | 15.0% |
| !!! | TACAATGTTATTTATTTTGA+AGG | + | chr5_4:6121809-6121828 | Msa0832940:intron | 15.0% |
| !! | GTAAATATTTATTAGAAAAC+AGG | - | chr5_4:6122029-6122048 | None:intergenic | 15.0% |
| !! | ATTGAATGATTAGGAAATAA+CGG | - | chr5_4:6118832-6118851 | None:intergenic | 20.0% |
| !! | GTAGAATTAATTGAATGATT+AGG | - | chr5_4:6118841-6118860 | None:intergenic | 20.0% |
| !! | AATCATTCAATTAATTCTAC+TGG | + | chr5_4:6118841-6118860 | Msa0832940:intron | 20.0% |
| !! | AAAAGTGAAAAAACAAAAAG+AGG | - | chr5_4:6119056-6119075 | None:intergenic | 20.0% |
| !!! | TTTAATTTTGTTTTTGATGC+AGG | + | chr5_4:6119086-6119105 | Msa0832940:intron | 20.0% |
| !! | AATCATCAAGAAATAAGATT+AGG | - | chr5_4:6119395-6119414 | None:intergenic | 20.0% |
| !! | AGTTTAAATACTCAAAACTA+AGG | - | chr5_4:6119671-6119690 | None:intergenic | 20.0% |
| !!! | TAGTTTTGAGTATTTAAACT+TGG | + | chr5_4:6119671-6119690 | Msa0832940:intron | 20.0% |
| !! | AGGTTTATTATTACTGAATA+TGG | - | chr5_4:6120182-6120201 | None:intergenic | 20.0% |
| !!! | AATTTTTTAGTTCAGAATCA+AGG | - | chr5_4:6120202-6120221 | None:intergenic | 20.0% |
| !! | ATTTGCTTTCAAAAGAAATA+GGG | - | chr5_4:6120361-6120380 | None:intergenic | 20.0% |
| !!! | AATTTGCTTTCAAAAGAAAT+AGG | - | chr5_4:6120362-6120381 | None:intergenic | 20.0% |
| !! | ACAATAAAAAATTTCACCAA+GGG | - | chr5_4:6120936-6120955 | None:intergenic | 20.0% |
| !! | TACAATAAAAAATTTCACCA+AGG | - | chr5_4:6120937-6120956 | None:intergenic | 20.0% |
| !! | AAATATATAGAGCATATACA+GGG | - | chr5_4:6121382-6121401 | None:intergenic | 20.0% |
| !! | AAAATATATAGAGCATATAC+AGG | - | chr5_4:6121383-6121402 | None:intergenic | 20.0% |
| !!! | AAAATTAAAAAGTTTTCCAG+AGG | - | chr5_4:6121564-6121583 | None:intergenic | 20.0% |
| !!! | TTTTTATTCAGTTAATGCAT+AGG | + | chr5_4:6121580-6121599 | Msa0832940:intron | 20.0% |
| !!! | ATGTTAGTTTATTAAAATGC+TGG | + | chr5_4:6122506-6122525 | Msa0832940:intron | 20.0% |
| !!! | TAAACAAACTGATTTATGTT+TGG | + | chr5_4:6123196-6123215 | Msa0832940:intron | 20.0% |
| !!! | TTTTTGGCTAAAATTGTTTT+TGG | + | chr5_4:6123459-6123478 | Msa0832940:intron | 20.0% |
| ! | ATCTAGAAATGATGAAAAGA+AGG | - | chr5_4:6118751-6118770 | None:intergenic | 25.0% |
| ! | TAATGTCAGTCATATTAATG+TGG | + | chr5_4:6118938-6118957 | Msa0832940:intron | 25.0% |
| ! | AGTAAAGGGAAATATACAAT+TGG | + | chr5_4:6119135-6119154 | Msa0832940:CDS | 25.0% |
| !!! | AGGTTTCTTTCTTGTTTTTT+TGG | + | chr5_4:6119213-6119232 | Msa0832940:intron | 25.0% |
| !!! | TTTTGGCTGTTTATTATGTT+TGG | + | chr5_4:6119230-6119249 | Msa0832940:intron | 25.0% |
| ! | TTCACTCTCTGATATATTAT+AGG | + | chr5_4:6119852-6119871 | Msa0832940:intron | 25.0% |
| ! | GTTAGTGTTAATAATCAGAT+TGG | + | chr5_4:6119880-6119899 | Msa0832940:intron | 25.0% |
| ! | TGTTAATAATCAGATTGGAT+TGG | + | chr5_4:6119885-6119904 | Msa0832940:intron | 25.0% |
| ! | ATTGTATTAGAAAGCTATGT+AGG | - | chr5_4:6119949-6119968 | None:intergenic | 25.0% |
| ! | TATGGAAATACTGATATTGA+AGG | + | chr5_4:6120003-6120022 | Msa0832940:CDS | 25.0% |
| ! | TTTGTTCAATTGTGTCAATT+GGG | + | chr5_4:6120065-6120084 | Msa0832940:CDS | 25.0% |
| ! | TTTGCTTTCAAAAGAAATAG+GGG | - | chr5_4:6120360-6120379 | None:intergenic | 25.0% |
| !!! | TTTCTTTTGAAAGCAAATTG+AGG | + | chr5_4:6120363-6120382 | Msa0832940:CDS | 25.0% |
| !!! | TTCTTTTGAAAGCAAATTGA+GGG | + | chr5_4:6120364-6120383 | Msa0832940:CDS | 25.0% |
| ! | AGTCTTAGTTAGTACAAATT+TGG | - | chr5_4:6121162-6121181 | None:intergenic | 25.0% |
| ! | TGTCTGACTAAAAAATGATA+TGG | + | chr5_4:6121405-6121424 | Msa0832940:intron | 25.0% |
| !! | ATTTACGCCTTAAAATTTTC+AGG | + | chr5_4:6122043-6122062 | Msa0832940:intron | 25.0% |
| !! | TTACCTTCCTGAAAATTTTA+AGG | - | chr5_4:6122053-6122072 | None:intergenic | 25.0% |
| !!! | AAAAATTTTGAAGCCTCAAA+AGG | + | chr5_4:6122443-6122462 | Msa0832940:intron | 25.0% |
| !! | AAACAATCTAAATCCTTTTG+AGG | - | chr5_4:6122459-6122478 | None:intergenic | 25.0% |
| ! | CTAACATATTGACATACTAT+AGG | - | chr5_4:6122493-6122512 | None:intergenic | 25.0% |
| !! | CTTCAACGTAACATTTTAAA+GGG | - | chr5_4:6122993-6123012 | None:intergenic | 25.0% |
| !! | ACTTCAACGTAACATTTTAA+AGG | - | chr5_4:6122994-6123013 | None:intergenic | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | + | chr5_4:6123152-6123171 | Msa0832940:intron | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | + | chr5_4:6123255-6123274 | Msa0832940:intron | 25.0% |
| ! | TAAAGGAGAATTGATAAAGA+AGG | + | chr5_4:6123272-6123291 | Msa0832940:intron | 25.0% |
| ! | TAAAGAAGGAGAATTGATAA+AGG | + | chr5_4:6123286-6123305 | Msa0832940:intron | 25.0% |
| ! | AAAGAAGGAGAATTGATAAA+GGG | + | chr5_4:6123287-6123306 | Msa0832940:intron | 25.0% |
| ! | GGGCAATAAAGAAAAATAAT+AGG | + | chr5_4:6123307-6123326 | Msa0832940:intron | 25.0% |
| TAACAAACAAACAAACACCT+TGG | + | chr5_4:6118548-6118567 | Msa0832940:five_prime_UTR | 30.0% | |
| TGATTCTTTCTCTTGTTCAA+AGG | - | chr5_4:6118635-6118654 | None:intergenic | 30.0% | |
| CAAGAGAAAGAATCAAGAAA+TGG | + | chr5_4:6118640-6118659 | Msa0832940:exon | 30.0% | |
| AAATGATGAAAAGAAGGAAG+CGG | - | chr5_4:6118745-6118764 | None:intergenic | 30.0% | |
| ATTATTATTAGTGTCGTGTC+TGG | - | chr5_4:6119304-6119323 | None:intergenic | 30.0% | |
| ! | CTTTTCATTGTCTAACCATT+TGG | + | chr5_4:6119568-6119587 | Msa0832940:intron | 30.0% |
| CAATTTAGTACCTATTTGCA+TGG | + | chr5_4:6119637-6119656 | Msa0832940:intron | 30.0% | |
| CTCTGATATATTATAGGATG+TGG | + | chr5_4:6119858-6119877 | Msa0832940:intron | 30.0% | |
| ATTGACACAATTGAACAAAG+CGG | - | chr5_4:6120064-6120083 | None:intergenic | 30.0% | |
| CTTTGTTCAATTGTGTCAAT+TGG | + | chr5_4:6120064-6120083 | Msa0832940:CDS | 30.0% | |
| TCTAGAGGCAACATATAATT+AGG | - | chr5_4:6120159-6120178 | None:intergenic | 30.0% | |
| TATTACTGAATATGGTCTAG+AGG | - | chr5_4:6120174-6120193 | None:intergenic | 30.0% | |
| GAACTAAAAAATTCATGTCC+TGG | + | chr5_4:6120209-6120228 | Msa0832940:intron | 30.0% | |
| TTCTATGACTATCACAATGT+TGG | + | chr5_4:6120233-6120252 | Msa0832940:intron | 30.0% | |
| TCTATGACTATCACAATGTT+GGG | + | chr5_4:6120234-6120253 | Msa0832940:intron | 30.0% | |
| !! | TCTTTTGAAAGCAAATTGAG+GGG | + | chr5_4:6120365-6120384 | Msa0832940:CDS | 30.0% |
| !! | AAATGGATTGAAAAGCTTAC+CGG | - | chr5_4:6120446-6120465 | None:intergenic | 30.0% |
| ACAAGTGACAACAATGAAAA+TGG | - | chr5_4:6120463-6120482 | None:intergenic | 30.0% | |
| ! | CTTGTCAGAACATTTTACTT+TGG | + | chr5_4:6120478-6120497 | Msa0832940:intron | 30.0% |
| CATCACAAGAGAAAAACAAT+TGG | - | chr5_4:6120529-6120548 | None:intergenic | 30.0% | |
| AAAGCCAAATTAAAGTTGCA+AGG | - | chr5_4:6120562-6120581 | None:intergenic | 30.0% | |
| AACAACAATGTTATCCTTCA+TGG | - | chr5_4:6120591-6120610 | None:intergenic | 30.0% | |
| ATGACGTAGAAATAAAGAAC+AGG | - | chr5_4:6120618-6120637 | None:intergenic | 30.0% | |
| AATATTAATTAACTAGGGGG+TGG | + | chr5_4:6120822-6120841 | Msa0832940:intron | 30.0% | |
| TTCCAATTCTTAAATGAGGT+CGG | + | chr5_4:6120974-6120993 | Msa0832940:intron | 30.0% | |
| TGGAGATTTCTTTGTACATT+AGG | + | chr5_4:6121032-6121051 | Msa0832940:intron | 30.0% | |
| CAAATTTGGAAAGAGGTTTA+AGG | - | chr5_4:6121148-6121167 | None:intergenic | 30.0% | |
| GTTAGTACAAATTTGGAAAG+AGG | - | chr5_4:6121155-6121174 | None:intergenic | 30.0% | |
| ! | TTAAAAAGTTTTCCAGAGGA+TGG | - | chr5_4:6121560-6121579 | None:intergenic | 30.0% |
| ! | TGATTATGATTGTAGCTCTA+AGG | + | chr5_4:6121614-6121633 | Msa0832940:intron | 30.0% |
| TCATCGGATAAAGTTGTAAA+AGG | - | chr5_4:6121666-6121685 | None:intergenic | 30.0% | |
| !!! | GCTATTTTTGTTGTGAAGAA+GGG | - | chr5_4:6121946-6121965 | None:intergenic | 30.0% |
| !!! | AGCTATTTTTGTTGTGAAGA+AGG | - | chr5_4:6121947-6121966 | None:intergenic | 30.0% |
| GCTATATATGTCATAGATAG+TGG | - | chr5_4:6121988-6122007 | None:intergenic | 30.0% | |
| TTATTAGAAAACAGGCAACA+TGG | - | chr5_4:6122021-6122040 | None:intergenic | 30.0% | |
| !! | AAAATTTTCAGGAAGGTAAG+AGG | + | chr5_4:6122054-6122073 | Msa0832940:intron | 30.0% |
| !! | AAATTTTCAGGAAGGTAAGA+GGG | + | chr5_4:6122055-6122074 | Msa0832940:intron | 30.0% |
| AGGGTGATATTATTCTCATA+CGG | + | chr5_4:6122074-6122093 | Msa0832940:CDS | 30.0% | |
| ATATTATTCTCATACGGAAG+TGG | + | chr5_4:6122080-6122099 | Msa0832940:CDS | 30.0% | |
| TAATTGCAAGGAAAACATTG+TGG | - | chr5_4:6122114-6122133 | None:intergenic | 30.0% | |
| ! | TTTAGTTTCACGTAATTGCA+AGG | - | chr5_4:6122126-6122145 | None:intergenic | 30.0% |
| GCAATGTTTGACAAACTAAA+TGG | - | chr5_4:6122152-6122171 | None:intergenic | 30.0% | |
| CATATCTGACTAGATGTTTA+TGG | - | chr5_4:6122226-6122245 | None:intergenic | 30.0% | |
| ! | TGAGGCTTCAAAATTTTTGT+AGG | - | chr5_4:6122441-6122460 | None:intergenic | 30.0% |
| TCTATGCAACGAACAATAAA+TGG | + | chr5_4:6122835-6122854 | Msa0832940:three_prime_UTR | 30.0% | |
| !!! | TCTTTGTATTGGTTTTGCAA+GGG | + | chr5_4:6122887-6122906 | Msa0832940:three_prime_UTR | 30.0% |
| !! | ATTTTAGCCAAAAACGTGTT+TGG | - | chr5_4:6123453-6123472 | None:intergenic | 30.0% |
| !!! | AGGACACTTTACTTTTTGAA+AGG | - | chr5_4:6123603-6123622 | None:intergenic | 30.0% |
| TGAATAAGAAAGAGTTGCCA+AGG | - | chr5_4:6118568-6118587 | None:intergenic | 35.0% | |
| CTTTCTCTTGTTCAAAGGAA+AGG | - | chr5_4:6118630-6118649 | None:intergenic | 35.0% | |
| !! | CGTGATTAGCTTAATGAAGA+TGG | - | chr5_4:6118786-6118805 | None:intergenic | 35.0% |
| GAATGATTAGGAAATAACGG+TGG | - | chr5_4:6118829-6118848 | None:intergenic | 35.0% | |
| GGGAAATATACAATTGGACT+TGG | + | chr5_4:6119141-6119160 | Msa0832940:CDS | 35.0% | |
| TTGAAGATGTCATCTCAATG+AGG | + | chr5_4:6119193-6119212 | Msa0832940:CDS | 35.0% | |
| ATTCTTGATGCAGATCTTTG+AGG | + | chr5_4:6119542-6119561 | Msa0832940:CDS | 35.0% | |
| GGTTTAATCACCATGCAAAT+AGG | - | chr5_4:6119650-6119669 | None:intergenic | 35.0% | |
| CTTTACATGAAAACAGTCAC+TGG | - | chr5_4:6119818-6119837 | None:intergenic | 35.0% | |
| ! | GTCTGGAACAAACAGAAATA+TGG | + | chr5_4:6119985-6120004 | Msa0832940:intron | 35.0% |
| ! | GATTCAACTAATGCTTGCTA+TGG | + | chr5_4:6120030-6120049 | Msa0832940:CDS | 35.0% |
| TTGTGATAGTCATAGAATCC+AGG | - | chr5_4:6120230-6120249 | None:intergenic | 35.0% | |
| CTATGACTATCACAATGTTG+GGG | + | chr5_4:6120235-6120254 | Msa0832940:intron | 35.0% | |
| !! | AATGGATTGAAAAGCTTACC+GGG | - | chr5_4:6120445-6120464 | None:intergenic | 35.0% |
| GCATCCTTGCAACTTTAATT+TGG | + | chr5_4:6120555-6120574 | Msa0832940:intron | 35.0% | |
| TTCACAAACATGTTACCTCA+TGG | + | chr5_4:6120714-6120733 | Msa0832940:CDS | 35.0% | |
| CGAGTTCCAATTCTTAAATG+AGG | + | chr5_4:6120970-6120989 | Msa0832940:intron | 35.0% | |
| TTCCGACCTCATTTAAGAAT+TGG | - | chr5_4:6120979-6120998 | None:intergenic | 35.0% | |
| ! | ATTTTCACCAAAGGACACAT+TGG | - | chr5_4:6121013-6121032 | None:intergenic | 35.0% |
| AATGTGTCCTTTGGTGAAAA+TGG | + | chr5_4:6121012-6121031 | Msa0832940:intron | 35.0% | |
| ! | GAAATCTCCATTTTCACCAA+AGG | - | chr5_4:6121022-6121041 | None:intergenic | 35.0% |
| GACTTAGCTCAAATCAACAA+TGG | + | chr5_4:6121102-6121121 | Msa0832940:intron | 35.0% | |
| ATTCCACTCTCCTTATAACA+AGG | + | chr5_4:6121298-6121317 | Msa0832940:CDS | 35.0% | |
| ! | GTCTGAACTACCTTGTTATA+AGG | - | chr5_4:6121311-6121330 | None:intergenic | 35.0% |
| !! | ACAGGGAGCATTATTATCAT+TGG | - | chr5_4:6121365-6121384 | None:intergenic | 35.0% |
| ! | GCAAAAAAGTTTTGCTCGTT+TGG | + | chr5_4:6121491-6121510 | Msa0832940:CDS | 35.0% |
| TGGATAAATGATGAGAACCT+GGG | - | chr5_4:6121540-6121559 | None:intergenic | 35.0% | |
| ATGGATAAATGATGAGAACC+TGG | - | chr5_4:6121541-6121560 | None:intergenic | 35.0% | |
| ! | AAAAGGTCCAAGCTTTTCTT+TGG | - | chr5_4:6121649-6121668 | None:intergenic | 35.0% |
| TGCTTTGGTATCAAAGTAGA+TGG | - | chr5_4:6121879-6121898 | None:intergenic | 35.0% | |
| ACTTTGATACCAAAGCAAGT+TGG | + | chr5_4:6121882-6121901 | Msa0832940:CDS | 35.0% | |
| ! | TACATGTTACCAACTTGCTT+TGG | - | chr5_4:6121894-6121913 | None:intergenic | 35.0% |
| TCACAACAAAAATAGCTCAC+TGG | + | chr5_4:6121950-6121969 | Msa0832940:CDS | 35.0% | |
| !! | ACGCCTTAAAATTTTCAGGA+AGG | + | chr5_4:6122047-6122066 | Msa0832940:intron | 35.0% |
| AAAGTTGAAGTCAAGACATG+AGG | + | chr5_4:6122193-6122212 | Msa0832940:CDS | 35.0% | |
| AAACGAACAGAGATACAGAT+TGG | + | chr5_4:6122377-6122396 | Msa0832940:intron | 35.0% | |
| ! | TTTGTAGGAGCACAACTAAA+AGG | - | chr5_4:6122426-6122445 | None:intergenic | 35.0% |
| AGTGTTTCAATGAACTTCTG+TGG | - | chr5_4:6122622-6122641 | None:intergenic | 35.0% | |
| CATTGAAACACTGAAGCTAA+TGG | + | chr5_4:6122630-6122649 | Msa0832940:CDS | 35.0% | |
| AAGCTAATGGAACATAGGTA+TGG | + | chr5_4:6122643-6122662 | Msa0832940:CDS | 35.0% | |
| ! | CTTGCTTGTTACATAATCCT+TGG | - | chr5_4:6122671-6122690 | None:intergenic | 35.0% |
| CAAGGATTATGTAACAAGCA+AGG | + | chr5_4:6122669-6122688 | Msa0832940:CDS | 35.0% | |
| TGCATAGAATCTACGATACA+TGG | - | chr5_4:6122743-6122762 | None:intergenic | 35.0% | |
| !!! | GTCTTTGTATTGGTTTTGCA+AGG | + | chr5_4:6122886-6122905 | Msa0832940:three_prime_UTR | 35.0% |
| TCATAATAGTTGTGAAGCTC+TGG | + | chr5_4:6123079-6123098 | Msa0832940:three_prime_UTR | 35.0% | |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | + | chr5_4:6123369-6123388 | Msa0832940:intron | 35.0% |
| ! | GCACTGTAGAGAATTGTTTT+TGG | + | chr5_4:6123481-6123500 | Msa0832940:intron | 35.0% |
| !!! | TGTAGAGAATTGTTTTTGGC+TGG | + | chr5_4:6123485-6123504 | Msa0832940:intron | 35.0% |
| !!! | GTAGAGAATTGTTTTTGGCT+GGG | + | chr5_4:6123486-6123505 | Msa0832940:intron | 35.0% |
| TCTATGCCAATGGAGATATA+GGG | - | chr5_4:6123532-6123551 | None:intergenic | 35.0% | |
| ATCTATGCCAATGGAGATAT+AGG | - | chr5_4:6123533-6123552 | None:intergenic | 35.0% | |
| ACTATCACTATCTATGCCAA+TGG | - | chr5_4:6123542-6123561 | None:intergenic | 35.0% | |
| ATTGGCATAGATAGTGATAG+TGG | + | chr5_4:6123541-6123560 | Msa0832940:three_prime_UTR | 35.0% | |
| ! | AAAAGTAAAGTGTCCTACCT+TGG | + | chr5_4:6123607-6123626 | Msa0832940:three_prime_UTR | 35.0% |
| AGATAGTTAAATGCGCAGAA+GGG | - | chr5_4:6123638-6123657 | None:intergenic | 35.0% | |
| AAGATAGTTAAATGCGCAGA+AGG | - | chr5_4:6123639-6123658 | None:intergenic | 35.0% | |
| !! | GTTTTTGATGCAGGAAGCAT+TGG | + | chr5_4:6119095-6119114 | Msa0832940:intron | 40.0% |
| GAGATCGATCCTAAACAGAT+TGG | + | chr5_4:6119465-6119484 | Msa0832940:CDS | 40.0% | |
| CTGCATCAAGAATGACTTGA+TGG | - | chr5_4:6119535-6119554 | None:intergenic | 40.0% | |
| GCGAGAATCACATATCCAAA+TGG | - | chr5_4:6119586-6119605 | None:intergenic | 40.0% | |
| TACTACTAAGGTTACGGCAT+CGG | - | chr5_4:6119791-6119810 | None:intergenic | 40.0% | |
| !! | TCAACTAATGCTTGCTATGG+AGG | + | chr5_4:6120033-6120052 | Msa0832940:CDS | 40.0% |
| GTTCAATTGTGTCAATTGGG+TGG | + | chr5_4:6120068-6120087 | Msa0832940:CDS | 40.0% | |
| AATTCATGGGATGGACGTTA+TGG | + | chr5_4:6120096-6120115 | Msa0832940:CDS | 40.0% | |
| !! | CCTGAGAAAGTAAGCATTGA+TGG | - | chr5_4:6120268-6120287 | None:intergenic | 40.0% |
| CCATCAATGCTTACTTTCTC+AGG | + | chr5_4:6120265-6120284 | Msa0832940:intron | 40.0% | |
| GCTGCTATTGCTATGCTAAT+TGG | + | chr5_4:6120326-6120345 | Msa0832940:CDS | 40.0% | |
| !! | TCAAAAGAAATAGGGGCATC+AGG | - | chr5_4:6120353-6120372 | None:intergenic | 40.0% |
| CAAATTGAGGGGAAGTCATA+TGG | + | chr5_4:6120376-6120395 | Msa0832940:CDS | 40.0% | |
| !! | TTGGCTTTGATATGCCATGA+AGG | + | chr5_4:6120574-6120593 | Msa0832940:intron | 40.0% |
| TCATCCACATGTAGCATTTC+AGG | + | chr5_4:6120634-6120653 | Msa0832940:intron | 40.0% | |
| GTATCCTGAAATGCTACATG+TGG | - | chr5_4:6120641-6120660 | None:intergenic | 40.0% | |
| TCATGTGGATTTAGTGCACT+TGG | - | chr5_4:6120663-6120682 | None:intergenic | 40.0% | |
| CCTACAGCACAAAAATCATG+TGG | - | chr5_4:6120678-6120697 | None:intergenic | 40.0% | |
| ! | CCACATGATTTTTGTGCTGT+AGG | + | chr5_4:6120675-6120694 | Msa0832940:intron | 40.0% |
| AAAAAATTTCACCAAGGGCC+AGG | - | chr5_4:6120931-6120950 | None:intergenic | 40.0% | |
| TCTTAAATGAGGTCGGAAAC+CGG | + | chr5_4:6120981-6121000 | Msa0832940:intron | 40.0% | |
| TTGCAGATATGAGAAACACG+AGG | + | chr5_4:6121238-6121257 | Msa0832940:intron | 40.0% | |
| TGCAGATATGAGAAACACGA+GGG | + | chr5_4:6121239-6121258 | Msa0832940:intron | 40.0% | |
| ! | CTACCTTGTTATAAGGAGAG+TGG | - | chr5_4:6121304-6121323 | None:intergenic | 40.0% |
| CTCATCATTTATCCATCCTC+TGG | + | chr5_4:6121545-6121564 | Msa0832940:intron | 40.0% | |
| !! | TGATTGTAGCTCTAAGGATG+AGG | + | chr5_4:6121620-6121639 | Msa0832940:intron | 40.0% |
| GAGGTTACCAAAGAAAAGCT+TGG | + | chr5_4:6121639-6121658 | Msa0832940:CDS | 40.0% | |
| !! | CACATACCTTTTCAAGATCC+CGG | - | chr5_4:6121704-6121723 | None:intergenic | 40.0% |
| ! | TAGAGGCTTTGCAACTTGTT+GGG | - | chr5_4:6121838-6121857 | None:intergenic | 40.0% |
| ATAGAGGCTTTGCAACTTGT+TGG | - | chr5_4:6121839-6121858 | None:intergenic | 40.0% | |
| AAAGCCTCTATACGATGAGA+AGG | + | chr5_4:6121848-6121867 | Msa0832940:CDS | 40.0% | |
| TGTACCTTCTCATCGTATAG+AGG | - | chr5_4:6121855-6121874 | None:intergenic | 40.0% | |
| AGGAAAACATTGTGGCAGTT+AGG | - | chr5_4:6122106-6122125 | None:intergenic | 40.0% | |
| TTCAGCAACATCCATCACTT+GGG | - | chr5_4:6122174-6122193 | None:intergenic | 40.0% | |
| TTTCAGCAACATCCATCACT+TGG | - | chr5_4:6122175-6122194 | None:intergenic | 40.0% | |
| GTTTCAATGAACTTCTGTGG+AGG | - | chr5_4:6122619-6122638 | None:intergenic | 40.0% | |
| CACTGAAGCTAATGGAACAT+AGG | + | chr5_4:6122638-6122657 | Msa0832940:CDS | 40.0% | |
| !! | ACGATACATGGTATCGACTT+CGG | - | chr5_4:6122731-6122750 | None:intergenic | 40.0% |
| AATTTGACTCCTGCAGTCAA+CGG | + | chr5_4:6122781-6122800 | Msa0832940:CDS | 40.0% | |
| TTAAGCTCCACATTGAGTGA+AGG | + | chr5_4:6122860-6122879 | Msa0832940:three_prime_UTR | 40.0% | |
| TAAGCTCCACATTGAGTGAA+GGG | + | chr5_4:6122861-6122880 | Msa0832940:three_prime_UTR | 40.0% | |
| GTGAAGGGTAGTCTTTGTAT+TGG | + | chr5_4:6122876-6122895 | Msa0832940:three_prime_UTR | 40.0% | |
| AGCTAGGATTTGTAGCTTCA+TGG | + | chr5_4:6123385-6123404 | Msa0832940:intron | 40.0% | |
| ! | GCTTCATGGAGAATTGCTTT+TGG | + | chr5_4:6123399-6123418 | Msa0832940:intron | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | + | chr5_4:6123402-6123421 | Msa0832940:intron | 40.0% |
| ! | AGCCAAACCAAACACGTTTT+TGG | + | chr5_4:6123443-6123462 | Msa0832940:intron | 40.0% |
| AGCCAAAAACGTGTTTGGTT+TGG | - | chr5_4:6123448-6123467 | None:intergenic | 40.0% | |
| !! | TAGATAGTGATAGTGGTCAC+AGG | + | chr5_4:6123548-6123567 | Msa0832940:three_prime_UTR | 40.0% |
| ATTCCAACGTTCTTTGCTGC+TGG | - | chr5_4:6118668-6118687 | None:intergenic | 45.0% | |
| GTTACCTGTTGAACGCAGTT+AGG | - | chr5_4:6118716-6118735 | None:intergenic | 45.0% | |
| !! | TTTGATGCAGGAAGCATTGG+AGG | + | chr5_4:6119098-6119117 | Msa0832940:intron | 45.0% |
| ! | CTCATGATGGTGCGAGTAAA+GGG | + | chr5_4:6119121-6119140 | Msa0832940:CDS | 45.0% |
| TTGCATCTGCAGTTTGACAG+TGG | + | chr5_4:6119419-6119438 | Msa0832940:intron | 45.0% | |
| ! | TCCTAAACAGATTGGTCGTC+TGG | + | chr5_4:6119473-6119492 | Msa0832940:CDS | 45.0% |
| TCCAGACGACCAATCTGTTT+AGG | - | chr5_4:6119477-6119496 | None:intergenic | 45.0% | |
| GTGATTCTCGCTGTCAATGT+AGG | + | chr5_4:6119595-6119614 | Msa0832940:intron | 45.0% | |
| ACTACTAAGGTTACGGCATC+GGG | - | chr5_4:6119790-6119809 | None:intergenic | 45.0% | |
| GGTCGCTACTACTAAGGTTA+CGG | - | chr5_4:6119797-6119816 | None:intergenic | 45.0% | |
| ATTGGGTGGAGAGCAATTCA+TGG | + | chr5_4:6120082-6120101 | Msa0832940:CDS | 45.0% | |
| TTGGGTGGAGAGCAATTCAT+GGG | + | chr5_4:6120083-6120102 | Msa0832940:CDS | 45.0% | |
| CTTTCTCAGGTCTATGCTGA+AGG | + | chr5_4:6120278-6120297 | Msa0832940:intron | 45.0% | |
| TGACCTTGCTAGTGAATACC+CGG | + | chr5_4:6120424-6120443 | Msa0832940:CDS | 45.0% | |
| TTACCGGGTATTCACTAGCA+AGG | - | chr5_4:6120430-6120449 | None:intergenic | 45.0% | |
| TTTGTGCTGTAGGTTGTCGA+CGG | + | chr5_4:6120685-6120704 | Msa0832940:intron | 45.0% | |
| AGCAAGTATCAAGAGCCATG+AGG | - | chr5_4:6120732-6120751 | None:intergenic | 45.0% | |
| AAATGCTGCATAGATGGACG+CGG | - | chr5_4:6121919-6121938 | None:intergenic | 45.0% | |
| GGATGCAAATGCTGCATAGA+TGG | - | chr5_4:6121925-6121944 | None:intergenic | 45.0% | |
| GTCAAACATTGCCCAAGTGA+TGG | + | chr5_4:6122160-6122179 | Msa0832940:CDS | 45.0% | |
| GTCAACGGTTTGTCTGTCAA+TGG | + | chr5_4:6122796-6122815 | Msa0832940:CDS | 45.0% | |
| AGACTACCCTTCACTCAATG+TGG | - | chr5_4:6122870-6122889 | None:intergenic | 45.0% | |
| ATGGAGATATAGGGCCTGTT+TGG | - | chr5_4:6123523-6123542 | None:intergenic | 45.0% | |
| AACAGGCCCTATATCTCCAT+TGG | + | chr5_4:6123523-6123542 | Msa0832940:intron | 45.0% | |
| AGTTAAATGCGCAGAAGGGT+GGG | - | chr5_4:6123634-6123653 | None:intergenic | 45.0% | |
| TAGTTAAATGCGCAGAAGGG+TGG | - | chr5_4:6123635-6123654 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTAATTAGAAAAA+AGG | + | chr5_4:6118981-6119000 | Msa0832940:intron | 5.0% |
| CCTGTTGAACGCAGTTAGGA+GGG | - | chr5_4:6118712-6118731 | None:intergenic | 50.0% | |
| ACCTGTTGAACGCAGTTAGG+AGG | - | chr5_4:6118713-6118732 | None:intergenic | 50.0% | |
| !! | GAAGCATTGGAGGCTCATGA+TGG | + | chr5_4:6119108-6119127 | Msa0832940:CDS | 50.0% |
| ! | GCTCATGATGGTGCGAGTAA+AGG | + | chr5_4:6119120-6119139 | Msa0832940:CDS | 50.0% |
| ! | CAGATTGGTCGTCTGGAAGT+CGG | + | chr5_4:6119480-6119499 | Msa0832940:CDS | 50.0% |
| GTCACTGGTCGCTACTACTA+AGG | - | chr5_4:6119803-6119822 | None:intergenic | 50.0% | |
| GTGGAGAGCAATTCATGGGA+TGG | + | chr5_4:6120087-6120106 | Msa0832940:CDS | 50.0% | |
| GGGTATTCACTAGCAAGGTC+AGG | - | chr5_4:6120425-6120444 | None:intergenic | 50.0% | |
| ! | GATGCAAGTTGAGTCTGACC+TGG | + | chr5_4:6120905-6120924 | Msa0832940:intron | 50.0% |
| TCACCAAAGGACACATTGGC+AGG | - | chr5_4:6121009-6121028 | None:intergenic | 50.0% | |
| TGGTCTTCAGCGACTTCTTG+AGG | + | chr5_4:6121511-6121530 | Msa0832940:CDS | 50.0% | |
| ! | GCTTTGGTAGCTCTCGTCAT+CGG | - | chr5_4:6121682-6121701 | None:intergenic | 50.0% |
| ATGACGAGAGCTACCAAAGC+CGG | + | chr5_4:6121682-6121701 | Msa0832940:CDS | 50.0% | |
| !! | CCTTTTCAAGATCCCGGCTT+TGG | - | chr5_4:6121698-6121717 | None:intergenic | 50.0% |
| CCAAAGCCGGGATCTTGAAA+AGG | + | chr5_4:6121695-6121714 | Msa0832940:CDS | 50.0% | |
| ! | GGAACATAGGTATGGTGCCA+AGG | + | chr5_4:6122651-6122670 | Msa0832940:CDS | 50.0% |
| ! | AAGCAAGGACAGCAGCCTTT+TGG | + | chr5_4:6122684-6122703 | Msa0832940:CDS | 50.0% |
| AGAATGTGCCTGGAGCCAAA+AGG | - | chr5_4:6122702-6122721 | None:intergenic | 50.0% | |
| TCGGTGAGAAAGAATGTGCC+TGG | - | chr5_4:6122712-6122731 | None:intergenic | 50.0% | |
| ! | ACAGACAAACCGTTGACTGC+AGG | - | chr5_4:6122793-6122812 | None:intergenic | 50.0% |
| GTCACAGGTGCTAGGAAATC+TGG | + | chr5_4:6123577-6123596 | Msa0832940:three_prime_UTR | 50.0% | |
| GCACCAGCAGCAAAGAACGT+TGG | + | chr5_4:6118662-6118681 | Msa0832940:CDS | 55.0% | |
| CCCTCCTAACTGCGTTCAAC+AGG | + | chr5_4:6118709-6118728 | Msa0832940:CDS | 55.0% | |
| AGCAATAGCAGCAGCTCCTC+CGG | - | chr5_4:6120318-6120337 | None:intergenic | 55.0% | |
| AAGTTGAGTCTGACCTGGCC+TGG | + | chr5_4:6120910-6120929 | Msa0832940:intron | 55.0% | |
| AAGGACACATTGGCAGGCAC+CGG | - | chr5_4:6121003-6121022 | None:intergenic | 55.0% | |
| GTGCCTGCCAATGTGTCCTT+TGG | + | chr5_4:6121003-6121022 | Msa0832940:intron | 55.0% | |
| GCGACTTCTTGAGGAATCCC+AGG | + | chr5_4:6121520-6121539 | Msa0832940:CDS | 55.0% | |
| TGACGAGAGCTACCAAAGCC+GGG | + | chr5_4:6121683-6121702 | Msa0832940:CDS | 55.0% | |
| GGGCAGATGCTGAACCAAAC+AGG | + | chr5_4:6123506-6123525 | Msa0832940:intron | 55.0% | |
| GAAGGTCCTGCTCGACCTAC+CGG | + | chr5_4:6120296-6120315 | Msa0832940:CDS | 60.0% | |
| ATAGCAGCAGCTCCTCCGGT+AGG | - | chr5_4:6120314-6120333 | None:intergenic | 60.0% | |
| ATTTCACCAAGGGCCAGGCC+AGG | - | chr5_4:6120926-6120945 | None:intergenic | 60.0% | |
| !!! | GACAGCAGCCTTTTGGCTCC+AGG | + | chr5_4:6122691-6122710 | Msa0832940:CDS | 60.0% |
| GGTCACAGGCTCACAGTCAC+AGG | + | chr5_4:6123562-6123581 | Msa0832940:three_prime_UTR | 60.0% | |
| GGCTCACAGTCACAGGTGCT+AGG | + | chr5_4:6123569-6123588 | Msa0832940:three_prime_UTR | 60.0% | |
| CAGAAGGGTGGGTCCAAGGT+AGG | - | chr5_4:6123623-6123642 | None:intergenic | 60.0% | |
| TGCGCAGAAGGGTGGGTCCA+AGG | - | chr5_4:6123627-6123646 | None:intergenic | 65.0% | |
| GGTCCTGCTCGACCTACCGG+AGG | + | chr5_4:6120299-6120318 | Msa0832940:CDS | 70.0% | |
| GCTCCTCCGGTAGGTCGAGC+AGG | - | chr5_4:6120305-6120324 | None:intergenic | 70.0% | |
| GTCTGACCTGGCCTGGCCCT+TGG | + | chr5_4:6120917-6120936 | Msa0832940:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 6118539 | 6123678 | 6118539 | ID=Msa0832940;Name=Msa0832940 |
| chr5_4 | mRNA | 6118539 | 6123678 | 6118539 | ID=Msa0832940-mRNA-1;Parent=Msa0832940;Name=Msa0832940-mRNA-1;_AED=0.12;_eAED=0.12;_QI=120|1|1|1|0.91|0.84|13|425|470 |
| chr5_4 | exon | 6118539 | 6118730 | 6118539 | ID=Msa0832940-mRNA-1:exon:2603;Parent=Msa0832940-mRNA-1 |
| chr5_4 | exon | 6119108 | 6119214 | 6119108 | ID=Msa0832940-mRNA-1:exon:2604;Parent=Msa0832940-mRNA-1 |
| chr5_4 | exon | 6119431 | 6119563 | 6119431 | ID=Msa0832940-mRNA-1:exon:2605;Parent=Msa0832940-mRNA-1 |
| chr5_4 | exon | 6120000 | 6120143 | 6120000 | ID=Msa0832940-mRNA-1:exon:2606;Parent=Msa0832940-mRNA-1 |
| chr5_4 | exon | 6120287 | 6120445 | 6120287 | ID=Msa0832940-mRNA-1:exon:2607;Parent=Msa0832940-mRNA-1 |
| chr5_4 | exon | 6120697 | 6120770 | 6120697 | ID=Msa0832940-mRNA-1:exon:2608;Parent=Msa0832940-mRNA-1 |
| chr5_4 | exon | 6121244 | 6121319 | 6121244 | ID=Msa0832940-mRNA-1:exon:2609;Parent=Msa0832940-mRNA-1 |
| chr5_4 | exon | 6121486 | 6121541 | 6121486 | ID=Msa0832940-mRNA-1:exon:2610;Parent=Msa0832940-mRNA-1 |
| chr5_4 | exon | 6121629 | 6121716 | 6121629 | ID=Msa0832940-mRNA-1:exon:2611;Parent=Msa0832940-mRNA-1 |
| chr5_4 | exon | 6121831 | 6121971 | 6121831 | ID=Msa0832940-mRNA-1:exon:2612;Parent=Msa0832940-mRNA-1 |
| chr5_4 | exon | 6122065 | 6122214 | 6122065 | ID=Msa0832940-mRNA-1:exon:2613;Parent=Msa0832940-mRNA-1 |
| chr5_4 | exon | 6122613 | 6123106 | 6122613 | ID=Msa0832940-mRNA-1:exon:2614;Parent=Msa0832940-mRNA-1 |
| chr5_4 | exon | 6123535 | 6123678 | 6123535 | ID=Msa0832940-mRNA-1:exon:2615;Parent=Msa0832940-mRNA-1 |
| chr5_4 | five_prime_UTR | 6118539 | 6118658 | 6118539 | ID=Msa0832940-mRNA-1:five_prime_utr;Parent=Msa0832940-mRNA-1 |
| chr5_4 | CDS | 6118659 | 6118730 | 6118659 | ID=Msa0832940-mRNA-1:cds;Parent=Msa0832940-mRNA-1 |
| chr5_4 | CDS | 6119108 | 6119214 | 6119108 | ID=Msa0832940-mRNA-1:cds;Parent=Msa0832940-mRNA-1 |
| chr5_4 | CDS | 6119431 | 6119563 | 6119431 | ID=Msa0832940-mRNA-1:cds;Parent=Msa0832940-mRNA-1 |
| chr5_4 | CDS | 6120000 | 6120143 | 6120000 | ID=Msa0832940-mRNA-1:cds;Parent=Msa0832940-mRNA-1 |
| chr5_4 | CDS | 6120287 | 6120445 | 6120287 | ID=Msa0832940-mRNA-1:cds;Parent=Msa0832940-mRNA-1 |
| chr5_4 | CDS | 6120697 | 6120770 | 6120697 | ID=Msa0832940-mRNA-1:cds;Parent=Msa0832940-mRNA-1 |
| chr5_4 | CDS | 6121244 | 6121319 | 6121244 | ID=Msa0832940-mRNA-1:cds;Parent=Msa0832940-mRNA-1 |
| chr5_4 | CDS | 6121486 | 6121541 | 6121486 | ID=Msa0832940-mRNA-1:cds;Parent=Msa0832940-mRNA-1 |
| chr5_4 | CDS | 6121629 | 6121716 | 6121629 | ID=Msa0832940-mRNA-1:cds;Parent=Msa0832940-mRNA-1 |
| chr5_4 | CDS | 6121831 | 6121971 | 6121831 | ID=Msa0832940-mRNA-1:cds;Parent=Msa0832940-mRNA-1 |
| chr5_4 | CDS | 6122065 | 6122214 | 6122065 | ID=Msa0832940-mRNA-1:cds;Parent=Msa0832940-mRNA-1 |
| chr5_4 | CDS | 6122613 | 6122825 | 6122613 | ID=Msa0832940-mRNA-1:cds;Parent=Msa0832940-mRNA-1 |
| chr5_4 | three_prime_UTR | 6122826 | 6123106 | 6122826 | ID=Msa0832940-mRNA-1:three_prime_utr;Parent=Msa0832940-mRNA-1 |
| chr5_4 | three_prime_UTR | 6123535 | 6123678 | 6123535 | ID=Msa0832940-mRNA-1:three_prime_utr;Parent=Msa0832940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
