Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807010 | XP_003611167.1 | 95.541 | 471 | 7 | 2 | 1 | 457 | 1 | 471 | 0.0 | 927 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807010 | sp|P54873|HMCS_ARATH | 75.000 | 468 | 94 | 3 | 5 | 457 | 2 | 461 | 0.0 | 744 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807010 | G7KER8 | 95.541 | 471 | 7 | 2 | 1 | 457 | 1 | 471 | 0.0 | 927 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001800 | Msa0807010 | 0.801508 | 8.710079e-49 | -8.615850e-47 |
| Msa0044170 | Msa0807010 | 0.816511 | 5.325804e-52 | -8.615850e-47 |
| Msa0090850 | Msa0807010 | 0.848801 | 4.862265e-60 | -8.615850e-47 |
| Msa0753920 | Msa0807010 | 0.955085 | 6.812710e-113 | -8.615850e-47 |
| Msa0807010 | Msa0832940 | 0.995744 | 1.973202e-219 | -8.615850e-47 |
| Msa0807010 | Msa1029850 | 0.810857 | 9.358409e-51 | -8.615850e-47 |
| Msa0807010 | Msa1132990 | 0.906245 | 1.823531e-80 | -8.615850e-47 |
| Msa0807010 | Msa1198050 | 0.819662 | 1.032380e-52 | -8.615850e-47 |
| Msa0807010 | Msa1200500 | 0.858975 | 5.694738e-63 | -8.615850e-47 |
| Msa0807010 | Msa1251740 | 0.809833 | 1.556006e-50 | -8.615850e-47 |
| Msa0807010 | Msa1253520 | 0.842772 | 2.108393e-58 | -8.615850e-47 |
| Msa0807010 | Msa1293840 | 0.862855 | 3.769707e-64 | -8.615850e-47 |
| Msa0189720 | Msa0807010 | 0.811670 | 6.232309e-51 | -8.615850e-47 |
| Msa0212300 | Msa0807010 | 0.812835 | 3.471796e-51 | -8.615850e-47 |
| Msa0232100 | Msa0807010 | 0.812207 | 4.760517e-51 | -8.615850e-47 |
| Msa0484200 | Msa0807010 | 0.842334 | 2.755830e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807010 | MtrunA17_Chr5g0398151 | 95.541 | 471 | 7 | 2 | 1 | 457 | 1 | 471 | 0.0 | 927 |
| Msa0807010 | MtrunA17_Chr6g0474311 | 77.354 | 446 | 88 | 1 | 7 | 439 | 8 | 453 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807010 | AT4G11820.2 | 75.000 | 468 | 94 | 3 | 5 | 457 | 2 | 461 | 0.0 | 744 |
| Msa0807010 | AT4G11820.3 | 75.485 | 412 | 91 | 2 | 48 | 457 | 3 | 406 | 0.0 | 665 |
| Msa0807010 | AT4G11820.1 | 75.485 | 412 | 91 | 2 | 48 | 457 | 3 | 406 | 0.0 | 665 |
Find 124 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTGCTTTCAAAAGAAAT+AGG | 0.210965 | 5_3:-27748913 | None:intergenic |
| TCTATGCAACGAACAATAAA+TGG | 0.242624 | 5_3:+27751389 | Msa0807010:three_prime_UTR |
| GTCTGGAACAAACAGAAATA+TGG | 0.263458 | 5_3:+27748539 | Msa0807010:intron |
| GCAATGTTTGACAAACTAAA+TGG | 0.286875 | 5_3:-27750703 | None:intergenic |
| CTTTGTTCAATTGTGTCAAT+TGG | 0.290856 | 5_3:+27748618 | Msa0807010:CDS |
| ATTTGCTTTCAAAAGAAATA+GGG | 0.301513 | 5_3:-27748912 | None:intergenic |
| GCTGCTATTGCTATGCTAAT+TGG | 0.307008 | 5_3:+27748880 | Msa0807010:CDS |
| GTCTGAACTACCTTGTTATA+AGG | 0.329972 | 5_3:-27749862 | None:intergenic |
| TGATTATGATTGTAGCTCTA+AGG | 0.346847 | 5_3:+27750168 | Msa0807010:intron |
| TGCTTTGGTATCAAAGTAGA+TGG | 0.354413 | 5_3:-27750430 | None:intergenic |
| TCATCGGATAAAGTTGTAAA+AGG | 0.369541 | 5_3:-27750217 | None:intergenic |
| AAGCAAGGACAGCAGCCTTT+TGG | 0.374475 | 5_3:+27751238 | Msa0807010:CDS |
| CTTGCTTGTTACATAATCCT+TGG | 0.405156 | 5_3:-27751222 | None:intergenic |
| CCCTCCTAACTGCGTTCAAC+AGG | 0.405990 | 5_3:+27746878 | Msa0807010:CDS |
| CTGCATCAAGAATGACTTGA+TGG | 0.406438 | 5_3:-27748086 | None:intergenic |
| GTCACAGGTGCTAGGAAATC+TGG | 0.409006 | 5_3:+27752149 | Msa0807010:three_prime_UTR |
| ATAGAGGCTTTGCAACTTGT+TGG | 0.416177 | 5_3:-27750390 | None:intergenic |
| CTCATGATGGTGCGAGTAAA+GGG | 0.416361 | 5_3:+27747290 | Msa0807010:CDS |
| TCCAGACGACCAATCTGTTT+AGG | 0.418016 | 5_3:-27748028 | None:intergenic |
| TCCTAAACAGATTGGTCGTC+TGG | 0.418362 | 5_3:+27748027 | Msa0807010:CDS |
| TAGAGGCTTTGCAACTTGTT+GGG | 0.419718 | 5_3:-27750389 | None:intergenic |
| CATTGAAACACTGAAGCTAA+TGG | 0.420891 | 5_3:+27751184 | Msa0807010:CDS |
| GGATGCAAATGCTGCATAGA+TGG | 0.426955 | 5_3:-27750476 | None:intergenic |
| GTTACCTGTTGAACGCAGTT+AGG | 0.430235 | 5_3:-27746882 | None:intergenic |
| ATTCTTGATGCAGATCTTTG+AGG | 0.432466 | 5_3:+27748096 | Msa0807010:CDS |
| ATTCCAACGTTCTTTGCTGC+TGG | 0.435491 | 5_3:-27746834 | None:intergenic |
| TACATGTTACCAACTTGCTT+TGG | 0.440980 | 5_3:-27750445 | None:intergenic |
| GTGAAGGGTAGTCTTTGTAT+TGG | 0.443511 | 5_3:+27751430 | Msa0807010:three_prime_UTR |
| CTTTCTCTTGTTCAAAGGAA+AGG | 0.445132 | 5_3:-27746796 | None:intergenic |
| TCAAAAGAAATAGGGGCATC+AGG | 0.453354 | 5_3:-27748904 | None:intergenic |
| CAAATTGAGGGGAAGTCATA+TGG | 0.453589 | 5_3:+27748930 | Msa0807010:CDS |
| CAAGAGAAAGAATCAAGAAA+TGG | 0.453610 | 5_3:+27746809 | Msa0807010:exon |
| TCATAATAGTTGTGAAGCTC+TGG | 0.460821 | 5_3:+27751633 | Msa0807010:three_prime_UTR |
| GCTCCTCCGGTAGGTCGAGC+AGG | 0.463854 | 5_3:-27748856 | None:intergenic |
| AATTCATGGGATGGACGTTA+TGG | 0.464557 | 5_3:+27748650 | Msa0807010:CDS |
| AGCAATAGCAGCAGCTCCTC+CGG | 0.467184 | 5_3:-27748869 | None:intergenic |
| AGTAAAGGGAAATATACAAT+TGG | 0.468493 | 5_3:+27747304 | Msa0807010:CDS |
| TTTGATGCAGGAAGCATTGG+AGG | 0.489358 | 5_3:+27747267 | Msa0807010:intron |
| TTTGTTCAATTGTGTCAATT+GGG | 0.489475 | 5_3:+27748619 | Msa0807010:CDS |
| TGTACCTTCTCATCGTATAG+AGG | 0.489750 | 5_3:-27750406 | None:intergenic |
| ATTGGGTGGAGAGCAATTCA+TGG | 0.491422 | 5_3:+27748636 | Msa0807010:CDS |
| CTTTCTCAGGTCTATGCTGA+AGG | 0.492679 | 5_3:+27748832 | Msa0807010:intron |
| ATGACGAGAGCTACCAAAGC+CGG | 0.493439 | 5_3:+27750236 | Msa0807010:CDS |
| TATGGAAATACTGATATTGA+AGG | 0.498987 | 5_3:+27748557 | Msa0807010:CDS |
| GCTCATGATGGTGCGAGTAA+AGG | 0.499177 | 5_3:+27747289 | Msa0807010:CDS |
| GAAGGTCCTGCTCGACCTAC+CGG | 0.502083 | 5_3:+27748850 | Msa0807010:CDS |
| TGGTCTTCAGCGACTTCTTG+AGG | 0.503836 | 5_3:+27750065 | Msa0807010:CDS |
| TTTCAGCAACATCCATCACT+TGG | 0.507070 | 5_3:-27750726 | None:intergenic |
| AGGAAAACATTGTGGCAGTT+AGG | 0.515627 | 5_3:-27750657 | None:intergenic |
| TGATTCTTTCTCTTGTTCAA+AGG | 0.516266 | 5_3:-27746801 | None:intergenic |
| TCGGTGAGAAAGAATGTGCC+TGG | 0.516526 | 5_3:-27751263 | None:intergenic |
| TTTGCTTTCAAAAGAAATAG+GGG | 0.519392 | 5_3:-27748911 | None:intergenic |
| GCGACTTCTTGAGGAATCCC+AGG | 0.520791 | 5_3:+27750074 | Msa0807010:CDS |
| AGTGTTTCAATGAACTTCTG+TGG | 0.521063 | 5_3:-27751173 | None:intergenic |
| CCAAAGCCGGGATCTTGAAA+AGG | 0.524815 | 5_3:+27750249 | Msa0807010:CDS |
| ACCTGTTGAACGCAGTTAGG+AGG | 0.526299 | 5_3:-27746879 | None:intergenic |
| GGGTATTCACTAGCAAGGTC+AGG | 0.527013 | 5_3:-27748976 | None:intergenic |
| AAAAGTAAAGTGTCCTACCT+TGG | 0.527107 | 5_3:+27752179 | Msa0807010:three_prime_UTR |
| TAGTTAAATGCGCAGAAGGG+TGG | 0.527513 | 5_3:-27752204 | None:intergenic |
| TTTAGTTTCACGTAATTGCA+AGG | 0.530355 | 5_3:-27750677 | None:intergenic |
| TCAACTAATGCTTGCTATGG+AGG | 0.531555 | 5_3:+27748587 | Msa0807010:CDS |
| AAGATAGTTAAATGCGCAGA+AGG | 0.534540 | 5_3:-27752208 | None:intergenic |
| GATTCAACTAATGCTTGCTA+TGG | 0.539495 | 5_3:+27748584 | Msa0807010:CDS |
| ATATTATTCTCATACGGAAG+TGG | 0.541033 | 5_3:+27750634 | Msa0807010:CDS |
| TGCGCAGAAGGGTGGGTCCA+AGG | 0.543375 | 5_3:-27752196 | None:intergenic |
| GAGATCGATCCTAAACAGAT+TGG | 0.548622 | 5_3:+27748019 | Msa0807010:CDS |
| TGACGAGAGCTACCAAAGCC+GGG | 0.549767 | 5_3:+27750237 | Msa0807010:CDS |
| GGGAAATATACAATTGGACT+TGG | 0.552530 | 5_3:+27747310 | Msa0807010:CDS |
| GAGGTTACCAAAGAAAAGCT+TGG | 0.555142 | 5_3:+27750193 | Msa0807010:CDS |
| CAGAAGGGTGGGTCCAAGGT+AGG | 0.556620 | 5_3:-27752192 | None:intergenic |
| TGATTGTAGCTCTAAGGATG+AGG | 0.558354 | 5_3:+27750174 | Msa0807010:intron |
| GGTCACAGGCTCACAGTCAC+AGG | 0.563060 | 5_3:+27752134 | Msa0807010:three_prime_UTR |
| GTCAAACATTGCCCAAGTGA+TGG | 0.563325 | 5_3:+27750714 | Msa0807010:CDS |
| AGTTAAATGCGCAGAAGGGT+GGG | 0.563838 | 5_3:-27752203 | None:intergenic |
| ACAGACAAACCGTTGACTGC+AGG | 0.565692 | 5_3:-27751344 | None:intergenic |
| AACAGGCCCTATATCTCCAT+TGG | 0.566245 | 5_3:+27752095 | Msa0807010:intron |
| ACTATCACTATCTATGCCAA+TGG | 0.567138 | 5_3:-27752111 | None:intergenic |
| CACTGAAGCTAATGGAACAT+AGG | 0.569121 | 5_3:+27751192 | Msa0807010:CDS |
| TGCATAGAATCTACGATACA+TGG | 0.569318 | 5_3:-27751294 | None:intergenic |
| GTCAACGGTTTGTCTGTCAA+TGG | 0.569594 | 5_3:+27751350 | Msa0807010:CDS |
| TGAATAAGAAAGAGTTGCCA+AGG | 0.573450 | 5_3:-27746734 | None:intergenic |
| TTCAGCAACATCCATCACTT+GGG | 0.574544 | 5_3:-27750725 | None:intergenic |
| TAACAAACAAACAAACACCT+TGG | 0.580987 | 5_3:+27746717 | Msa0807010:five_prime_UTR |
| AGGGTGATATTATTCTCATA+CGG | 0.581841 | 5_3:+27750628 | Msa0807010:CDS |
| GGAACATAGGTATGGTGCCA+AGG | 0.583616 | 5_3:+27751205 | Msa0807010:CDS |
| AAGCTAATGGAACATAGGTA+TGG | 0.584877 | 5_3:+27751197 | Msa0807010:CDS |
| TTCACAAACATGTTACCTCA+TGG | 0.585332 | 5_3:+27749268 | Msa0807010:CDS |
| TAAGCTCCACATTGAGTGAA+GGG | 0.586328 | 5_3:+27751415 | Msa0807010:three_prime_UTR |
| CCTGTTGAACGCAGTTAGGA+GGG | 0.587798 | 5_3:-27746878 | None:intergenic |
| TTTGTGCTGTAGGTTGTCGA+CGG | 0.588804 | 5_3:+27749239 | Msa0807010:intron |
| CTACCTTGTTATAAGGAGAG+TGG | 0.592935 | 5_3:-27749855 | None:intergenic |
| GCTTTGGTAGCTCTCGTCAT+CGG | 0.595190 | 5_3:-27750233 | None:intergenic |
| AGAATGTGCCTGGAGCCAAA+AGG | 0.595474 | 5_3:-27751253 | None:intergenic |
| ATTGGCATAGATAGTGATAG+TGG | 0.595667 | 5_3:+27752113 | Msa0807010:three_prime_UTR |
| AATTTGACTCCTGCAGTCAA+CGG | 0.595715 | 5_3:+27751335 | Msa0807010:CDS |
| GTGGAGAGCAATTCATGGGA+TGG | 0.595820 | 5_3:+27748641 | Msa0807010:CDS |
| TAGATAGTGATAGTGGTCAC+AGG | 0.596566 | 5_3:+27752120 | Msa0807010:three_prime_UTR |
| CAGATTGGTCGTCTGGAAGT+CGG | 0.598190 | 5_3:+27748034 | Msa0807010:CDS |
| TTAAGCTCCACATTGAGTGA+AGG | 0.599286 | 5_3:+27751414 | Msa0807010:three_prime_UTR |
| TTGGGTGGAGAGCAATTCAT+GGG | 0.604306 | 5_3:+27748637 | Msa0807010:CDS |
| ACTTTGATACCAAAGCAAGT+TGG | 0.615714 | 5_3:+27750436 | Msa0807010:CDS |
| ACGATACATGGTATCGACTT+CGG | 0.616243 | 5_3:-27751282 | None:intergenic |
| GTTCAATTGTGTCAATTGGG+TGG | 0.616456 | 5_3:+27748622 | Msa0807010:CDS |
| GTTTCAATGAACTTCTGTGG+AGG | 0.619312 | 5_3:-27751170 | None:intergenic |
| GAAGCATTGGAGGCTCATGA+TGG | 0.621839 | 5_3:+27747277 | Msa0807010:CDS |
| ATTCCACTCTCCTTATAACA+AGG | 0.625771 | 5_3:+27749852 | Msa0807010:CDS |
| TGCAGATATGAGAAACACGA+GGG | 0.625881 | 5_3:+27749793 | Msa0807010:intron |
| AAAGCCTCTATACGATGAGA+AGG | 0.630768 | 5_3:+27750402 | Msa0807010:CDS |
| GGCTCACAGTCACAGGTGCT+AGG | 0.631640 | 5_3:+27752141 | Msa0807010:three_prime_UTR |
| GGTCCTGCTCGACCTACCGG+AGG | 0.636919 | 5_3:+27748853 | Msa0807010:CDS |
| TGACCTTGCTAGTGAATACC+CGG | 0.639253 | 5_3:+27748978 | Msa0807010:CDS |
| TTGCATCTGCAGTTTGACAG+TGG | 0.639309 | 5_3:+27747973 | Msa0807010:intron |
| TTACCGGGTATTCACTAGCA+AGG | 0.643611 | 5_3:-27748981 | None:intergenic |
| AGATAGTTAAATGCGCAGAA+GGG | 0.644229 | 5_3:-27752207 | None:intergenic |
| GCACCAGCAGCAAAGAACGT+TGG | 0.645271 | 5_3:+27746831 | Msa0807010:CDS |
| AGACTACCCTTCACTCAATG+TGG | 0.649805 | 5_3:-27751421 | None:intergenic |
| CAAGGATTATGTAACAAGCA+AGG | 0.651946 | 5_3:+27751223 | Msa0807010:CDS |
| ATAGCAGCAGCTCCTCCGGT+AGG | 0.656075 | 5_3:-27748865 | None:intergenic |
| AAAGTTGAAGTCAAGACATG+AGG | 0.659927 | 5_3:+27750747 | Msa0807010:CDS |
| TTGCAGATATGAGAAACACG+AGG | 0.684755 | 5_3:+27749792 | Msa0807010:intron |
| TAATTGCAAGGAAAACATTG+TGG | 0.695304 | 5_3:-27750665 | None:intergenic |
| ATTGACACAATTGAACAAAG+CGG | 0.706527 | 5_3:-27748615 | None:intergenic |
| AAATGCTGCATAGATGGACG+CGG | 0.723317 | 5_3:-27750470 | None:intergenic |
| AGCAAGTATCAAGAGCCATG+AGG | 0.727431 | 5_3:-27749283 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTAAGTCT+TGG | + | chr5_3:27747807-27747826 | Msa0807010:intron | 10.0% |
| !!! | TATTTATTTATTTTTTTGTC+TGG | + | chr5_3:27748522-27748541 | Msa0807010:intron | 10.0% |
| !! | ATGAAAAATATTAATTAACT+AGG | + | chr5_3:27749370-27749389 | Msa0807010:intron | 10.0% |
| !! | TGAAAAATATTAATTAACTA+GGG | + | chr5_3:27749371-27749390 | Msa0807010:intron | 10.0% |
| !!! | AGTCAAAAATTTATATTTTT+AGG | + | chr5_3:27751565-27751584 | Msa0807010:three_prime_UTR | 10.0% |
| !!! | GTTTTTTCACTTTTTAATTA+AGG | + | chr5_3:27747231-27747250 | Msa0807010:intron | 15.0% |
| !! | TAAAAAAAAAAAAAAATCCC+AGG | - | chr5_3:27747802-27747821 | None:intergenic | 15.0% |
| !! | GAAAAATATTAATTAACTAG+GGG | + | chr5_3:27749372-27749391 | Msa0807010:intron | 15.0% |
| !! | AAAAATATTAATTAACTAGG+GGG | + | chr5_3:27749373-27749392 | Msa0807010:intron | 15.0% |
| !! | CAAAAACATAATTAGATATT+TGG | - | chr5_3:27749775-27749794 | None:intergenic | 15.0% |
| !! | ATGATTGTAATTTAGTATTT+CGG | + | chr5_3:27749982-27750001 | Msa0807010:intron | 15.0% |
| !!! | TACAATGTTATTTATTTTGA+AGG | + | chr5_3:27750363-27750382 | Msa0807010:intron | 15.0% |
| !! | GTAAATATTTATTAGAAAAC+AGG | - | chr5_3:27750583-27750602 | None:intergenic | 15.0% |
| !! | ATTGAATGATTAGGAAATAA+CGG | - | chr5_3:27747001-27747020 | None:intergenic | 20.0% |
| !! | GTAGAATTAATTGAATGATT+AGG | - | chr5_3:27747010-27747029 | None:intergenic | 20.0% |
| !! | AATCATTCAATTAATTCTAC+TGG | + | chr5_3:27747010-27747029 | Msa0807010:intron | 20.0% |
| !! | AAAAGTGAAAAAACAAAAAG+AGG | - | chr5_3:27747225-27747244 | None:intergenic | 20.0% |
| !!! | TTTAATTTTGTTTTTGATGC+AGG | + | chr5_3:27747255-27747274 | Msa0807010:intron | 20.0% |
| !! | AATCATCAAGAAATAAGATT+AGG | - | chr5_3:27747949-27747968 | None:intergenic | 20.0% |
| !! | AGTTTAAATACTCAAAACTA+AGG | - | chr5_3:27748225-27748244 | None:intergenic | 20.0% |
| !!! | TAGTTTTGAGTATTTAAACT+TGG | + | chr5_3:27748225-27748244 | Msa0807010:intron | 20.0% |
| !! | AGGTTTATTATTACTGAATA+TGG | - | chr5_3:27748736-27748755 | None:intergenic | 20.0% |
| !!! | AATTTTTTAGTTCAGAATCA+AGG | - | chr5_3:27748756-27748775 | None:intergenic | 20.0% |
| !! | ATTTGCTTTCAAAAGAAATA+GGG | - | chr5_3:27748915-27748934 | None:intergenic | 20.0% |
| !!! | AATTTGCTTTCAAAAGAAAT+AGG | - | chr5_3:27748916-27748935 | None:intergenic | 20.0% |
| !! | ACAATAAAAAATTTCACCAA+GGG | - | chr5_3:27749490-27749509 | None:intergenic | 20.0% |
| !! | TACAATAAAAAATTTCACCA+AGG | - | chr5_3:27749491-27749510 | None:intergenic | 20.0% |
| !! | AAATATATAGAGCATATACA+GGG | - | chr5_3:27749936-27749955 | None:intergenic | 20.0% |
| !! | AAAATATATAGAGCATATAC+AGG | - | chr5_3:27749937-27749956 | None:intergenic | 20.0% |
| !!! | AAAATTAAAAAGTTTTCCAG+AGG | - | chr5_3:27750118-27750137 | None:intergenic | 20.0% |
| !!! | TTTTTATTCAGTTAATGCAT+AGG | + | chr5_3:27750134-27750153 | Msa0807010:intron | 20.0% |
| !!! | ATGTTAGTTTATTAAAATGC+TGG | + | chr5_3:27751060-27751079 | Msa0807010:intron | 20.0% |
| !!! | TAAACAAACTGATTTATGTT+TGG | + | chr5_3:27751765-27751784 | Msa0807010:intron | 20.0% |
| !! | TAAAGAATGAGAATTGATAA+AGG | + | chr5_3:27751855-27751874 | Msa0807010:intron | 20.0% |
| !! | AAAGAATGAGAATTGATAAA+GGG | + | chr5_3:27751856-27751875 | Msa0807010:intron | 20.0% |
| ! | ATCTAGAAATGATGAAAAGA+AGG | - | chr5_3:27746920-27746939 | None:intergenic | 25.0% |
| ! | TAATGTCAGTCATATTAATG+TGG | + | chr5_3:27747107-27747126 | Msa0807010:intron | 25.0% |
| ! | AGTAAAGGGAAATATACAAT+TGG | + | chr5_3:27747304-27747323 | Msa0807010:CDS | 25.0% |
| !!! | AGGTTTCTTTCTTGTTTTTT+TGG | + | chr5_3:27747382-27747401 | Msa0807010:intron | 25.0% |
| !!! | TTTTGGCTGTTTATTATGTT+TGG | + | chr5_3:27747399-27747418 | Msa0807010:intron | 25.0% |
| ! | AAAATTAAAACACCTTGACA+AGG | - | chr5_3:27747724-27747743 | None:intergenic | 25.0% |
| !!! | TGAAAAGTATTTTAACTCCT+GGG | + | chr5_3:27747782-27747801 | Msa0807010:intron | 25.0% |
| ! | ATGTGTGTTTAATGTTTGAT+AGG | + | chr5_3:27747878-27747897 | Msa0807010:intron | 25.0% |
| ! | TTCACTCTCTGATATATTAT+AGG | + | chr5_3:27748406-27748425 | Msa0807010:intron | 25.0% |
| ! | GTTAGTGTTAATAATCAGAT+TGG | + | chr5_3:27748434-27748453 | Msa0807010:intron | 25.0% |
| ! | TGTTAATAATCAGATTGGAT+TGG | + | chr5_3:27748439-27748458 | Msa0807010:intron | 25.0% |
| ! | ATTGTATTAGAAAGCTATGT+AGG | - | chr5_3:27748503-27748522 | None:intergenic | 25.0% |
| ! | TATGGAAATACTGATATTGA+AGG | + | chr5_3:27748557-27748576 | Msa0807010:CDS | 25.0% |
| ! | TTTGTTCAATTGTGTCAATT+GGG | + | chr5_3:27748619-27748638 | Msa0807010:CDS | 25.0% |
| ! | TTTGCTTTCAAAAGAAATAG+GGG | - | chr5_3:27748914-27748933 | None:intergenic | 25.0% |
| !!! | TTTCTTTTGAAAGCAAATTG+AGG | + | chr5_3:27748917-27748936 | Msa0807010:CDS | 25.0% |
| !!! | TTCTTTTGAAAGCAAATTGA+GGG | + | chr5_3:27748918-27748937 | Msa0807010:CDS | 25.0% |
| ! | AGTCTTAGTTAGTACAAATT+TGG | - | chr5_3:27749716-27749735 | None:intergenic | 25.0% |
| ! | TGTCTGACTAAAAAATGATA+TGG | + | chr5_3:27749959-27749978 | Msa0807010:intron | 25.0% |
| !! | ATTTACGCCTTAAAATTTTC+AGG | + | chr5_3:27750597-27750616 | Msa0807010:intron | 25.0% |
| !! | TTACCTTCCTGAAAATTTTA+AGG | - | chr5_3:27750607-27750626 | None:intergenic | 25.0% |
| !!! | AAAAATTTTGAAGCCTCAAA+AGG | + | chr5_3:27750997-27751016 | Msa0807010:intron | 25.0% |
| !! | AAACAATCTAAATCCTTTTG+AGG | - | chr5_3:27751013-27751032 | None:intergenic | 25.0% |
| ! | CTAACATATTGACATACTAT+AGG | - | chr5_3:27751047-27751066 | None:intergenic | 25.0% |
| !! | CTTCAACGTAACATTTTAAA+GGG | - | chr5_3:27751547-27751566 | None:intergenic | 25.0% |
| !! | ACTTCAACGTAACATTTTAA+AGG | - | chr5_3:27751548-27751567 | None:intergenic | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | + | chr5_3:27751721-27751740 | Msa0807010:intron | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | + | chr5_3:27751824-27751843 | Msa0807010:intron | 25.0% |
| ! | GGGCAATAAAGAAAAATAAT+AGG | + | chr5_3:27751876-27751895 | Msa0807010:intron | 25.0% |
| TAACAAACAAACAAACACCT+TGG | + | chr5_3:27746717-27746736 | Msa0807010:five_prime_UTR | 30.0% | |
| TGATTCTTTCTCTTGTTCAA+AGG | - | chr5_3:27746804-27746823 | None:intergenic | 30.0% | |
| CAAGAGAAAGAATCAAGAAA+TGG | + | chr5_3:27746809-27746828 | Msa0807010:exon | 30.0% | |
| AAATGATGAAAAGAAGGAAG+CGG | - | chr5_3:27746914-27746933 | None:intergenic | 30.0% | |
| !! | GATTTGATTTGTCATCATTC+AGG | + | chr5_3:27747640-27747659 | Msa0807010:intron | 30.0% |
| TCATTCAGGAACATGTAAAT+TGG | + | chr5_3:27747654-27747673 | Msa0807010:intron | 30.0% | |
| ! | GAACATGTAAATTGGTGATT+TGG | + | chr5_3:27747662-27747681 | Msa0807010:intron | 30.0% |
| TTGGTAAATACAACTCATGA+TGG | + | chr5_3:27747681-27747700 | Msa0807010:intron | 30.0% | |
| ! | AACCATTTAAAACCTTGTCA+AGG | + | chr5_3:27747709-27747728 | Msa0807010:intron | 30.0% |
| !!! | GTGAAAAGTATTTTAACTCC+TGG | + | chr5_3:27747781-27747800 | Msa0807010:intron | 30.0% |
| ! | CTTTTCATTGTCTAACCATT+TGG | + | chr5_3:27748122-27748141 | Msa0807010:intron | 30.0% |
| CAATTTAGTACCTATTTGCA+TGG | + | chr5_3:27748191-27748210 | Msa0807010:intron | 30.0% | |
| CTCTGATATATTATAGGATG+TGG | + | chr5_3:27748412-27748431 | Msa0807010:intron | 30.0% | |
| ATTGACACAATTGAACAAAG+CGG | - | chr5_3:27748618-27748637 | None:intergenic | 30.0% | |
| CTTTGTTCAATTGTGTCAAT+TGG | + | chr5_3:27748618-27748637 | Msa0807010:CDS | 30.0% | |
| TCTAGAGGCAACATATAATT+AGG | - | chr5_3:27748713-27748732 | None:intergenic | 30.0% | |
| TATTACTGAATATGGTCTAG+AGG | - | chr5_3:27748728-27748747 | None:intergenic | 30.0% | |
| GAACTAAAAAATTCATGTCC+TGG | + | chr5_3:27748763-27748782 | Msa0807010:intron | 30.0% | |
| TTCTATGACTATCACAATGT+TGG | + | chr5_3:27748787-27748806 | Msa0807010:intron | 30.0% | |
| TCTATGACTATCACAATGTT+GGG | + | chr5_3:27748788-27748807 | Msa0807010:intron | 30.0% | |
| !! | TCTTTTGAAAGCAAATTGAG+GGG | + | chr5_3:27748919-27748938 | Msa0807010:CDS | 30.0% |
| !! | AAATGGATTGAAAAGCTTAC+CGG | - | chr5_3:27749000-27749019 | None:intergenic | 30.0% |
| ACAAGTGACAACAATGAAAA+TGG | - | chr5_3:27749017-27749036 | None:intergenic | 30.0% | |
| ! | CTTGTCAGAACATTTTACTT+TGG | + | chr5_3:27749032-27749051 | Msa0807010:intron | 30.0% |
| AAAGCCAAATTAAAGTTGCA+AGG | - | chr5_3:27749116-27749135 | None:intergenic | 30.0% | |
| AACAACAATGTTATCCTTCA+TGG | - | chr5_3:27749145-27749164 | None:intergenic | 30.0% | |
| ATGACGTAGAAATAAAGAAC+AGG | - | chr5_3:27749172-27749191 | None:intergenic | 30.0% | |
| AATATTAATTAACTAGGGGG+TGG | + | chr5_3:27749376-27749395 | Msa0807010:intron | 30.0% | |
| TTCCAATTCTTAAATGAGGT+CGG | + | chr5_3:27749528-27749547 | Msa0807010:intron | 30.0% | |
| TGGAGATTTCTTTGTACATT+AGG | + | chr5_3:27749586-27749605 | Msa0807010:intron | 30.0% | |
| CAAATTTGGAAAGAGGTTTA+AGG | - | chr5_3:27749702-27749721 | None:intergenic | 30.0% | |
| GTTAGTACAAATTTGGAAAG+AGG | - | chr5_3:27749709-27749728 | None:intergenic | 30.0% | |
| ! | TTAAAAAGTTTTCCAGAGGA+TGG | - | chr5_3:27750114-27750133 | None:intergenic | 30.0% |
| ! | TGATTATGATTGTAGCTCTA+AGG | + | chr5_3:27750168-27750187 | Msa0807010:intron | 30.0% |
| TCATCGGATAAAGTTGTAAA+AGG | - | chr5_3:27750220-27750239 | None:intergenic | 30.0% | |
| !!! | GCTATTTTTGTTGTGAAGAA+GGG | - | chr5_3:27750500-27750519 | None:intergenic | 30.0% |
| !!! | AGCTATTTTTGTTGTGAAGA+AGG | - | chr5_3:27750501-27750520 | None:intergenic | 30.0% |
| GCTATATATGTCATAGATAG+TGG | - | chr5_3:27750542-27750561 | None:intergenic | 30.0% | |
| TTATTAGAAAACAGGCAACA+TGG | - | chr5_3:27750575-27750594 | None:intergenic | 30.0% | |
| !! | AAAATTTTCAGGAAGGTAAG+AGG | + | chr5_3:27750608-27750627 | Msa0807010:intron | 30.0% |
| !! | AAATTTTCAGGAAGGTAAGA+GGG | + | chr5_3:27750609-27750628 | Msa0807010:intron | 30.0% |
| AGGGTGATATTATTCTCATA+CGG | + | chr5_3:27750628-27750647 | Msa0807010:CDS | 30.0% | |
| ATATTATTCTCATACGGAAG+TGG | + | chr5_3:27750634-27750653 | Msa0807010:CDS | 30.0% | |
| TAATTGCAAGGAAAACATTG+TGG | - | chr5_3:27750668-27750687 | None:intergenic | 30.0% | |
| ! | TTTAGTTTCACGTAATTGCA+AGG | - | chr5_3:27750680-27750699 | None:intergenic | 30.0% |
| GCAATGTTTGACAAACTAAA+TGG | - | chr5_3:27750706-27750725 | None:intergenic | 30.0% | |
| CATATCTGACTAGATGTTTA+TGG | - | chr5_3:27750780-27750799 | None:intergenic | 30.0% | |
| ! | TGAGGCTTCAAAATTTTTGT+AGG | - | chr5_3:27750995-27751014 | None:intergenic | 30.0% |
| TCTATGCAACGAACAATAAA+TGG | + | chr5_3:27751389-27751408 | Msa0807010:three_prime_UTR | 30.0% | |
| !!! | TCTTTGTATTGGTTTTGCAA+GGG | + | chr5_3:27751441-27751460 | Msa0807010:three_prime_UTR | 30.0% |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | + | chr5_3:27752031-27752050 | Msa0807010:intron | 30.0% |
| !!! | AGGACACTTTACTTTTTGAA+AGG | - | chr5_3:27752175-27752194 | None:intergenic | 30.0% |
| TGAATAAGAAAGAGTTGCCA+AGG | - | chr5_3:27746737-27746756 | None:intergenic | 35.0% | |
| CTTTCTCTTGTTCAAAGGAA+AGG | - | chr5_3:27746799-27746818 | None:intergenic | 35.0% | |
| !! | CGTGATTAGCTTAATGAAGA+TGG | - | chr5_3:27746955-27746974 | None:intergenic | 35.0% |
| GAATGATTAGGAAATAACGG+TGG | - | chr5_3:27746998-27747017 | None:intergenic | 35.0% | |
| GGGAAATATACAATTGGACT+TGG | + | chr5_3:27747310-27747329 | Msa0807010:CDS | 35.0% | |
| TTGAAGATGTCATCTCAATG+AGG | + | chr5_3:27747362-27747381 | Msa0807010:intron | 35.0% | |
| ATTATTATTAGCGTCGTGTC+TGG | - | chr5_3:27747473-27747492 | None:intergenic | 35.0% | |
| TAAGCATGTGACATGAGATT+TGG | + | chr5_3:27747575-27747594 | Msa0807010:intron | 35.0% | |
| !!! | CACCTTGACAAGGTTTTAAA+TGG | - | chr5_3:27747714-27747733 | None:intergenic | 35.0% |
| ACATTAAACACACATACAGC+AGG | - | chr5_3:27747873-27747892 | None:intergenic | 35.0% | |
| ATTCTTGATGCAGATCTTTG+AGG | + | chr5_3:27748096-27748115 | Msa0807010:CDS | 35.0% | |
| GGTTTAATCACCATGCAAAT+AGG | - | chr5_3:27748204-27748223 | None:intergenic | 35.0% | |
| CTTTACATGAAAACAGTCAC+TGG | - | chr5_3:27748372-27748391 | None:intergenic | 35.0% | |
| ! | GTCTGGAACAAACAGAAATA+TGG | + | chr5_3:27748539-27748558 | Msa0807010:intron | 35.0% |
| ! | GATTCAACTAATGCTTGCTA+TGG | + | chr5_3:27748584-27748603 | Msa0807010:CDS | 35.0% |
| TTGTGATAGTCATAGAATCC+AGG | - | chr5_3:27748784-27748803 | None:intergenic | 35.0% | |
| CTATGACTATCACAATGTTG+GGG | + | chr5_3:27748789-27748808 | Msa0807010:intron | 35.0% | |
| !! | AATGGATTGAAAAGCTTACC+GGG | - | chr5_3:27748999-27749018 | None:intergenic | 35.0% |
| CATCACAAGAGAAAAACGAT+TGG | - | chr5_3:27749083-27749102 | None:intergenic | 35.0% | |
| GCATCCTTGCAACTTTAATT+TGG | + | chr5_3:27749109-27749128 | Msa0807010:intron | 35.0% | |
| TCATGTGAATTTAGTGCACT+TGG | - | chr5_3:27749217-27749236 | None:intergenic | 35.0% | |
| ! | TCACATGATTTTTGTGCTGT+AGG | + | chr5_3:27749229-27749248 | Msa0807010:intron | 35.0% |
| TTCACAAACATGTTACCTCA+TGG | + | chr5_3:27749268-27749287 | Msa0807010:CDS | 35.0% | |
| CGAGTTCCAATTCTTAAATG+AGG | + | chr5_3:27749524-27749543 | Msa0807010:intron | 35.0% | |
| TTCCGACCTCATTTAAGAAT+TGG | - | chr5_3:27749533-27749552 | None:intergenic | 35.0% | |
| ! | ATTTTCACCAAAGGACACAT+TGG | - | chr5_3:27749567-27749586 | None:intergenic | 35.0% |
| AATGTGTCCTTTGGTGAAAA+TGG | + | chr5_3:27749566-27749585 | Msa0807010:intron | 35.0% | |
| ! | GAAATCTCCATTTTCACCAA+AGG | - | chr5_3:27749576-27749595 | None:intergenic | 35.0% |
| GACTTAGCTCAAATCAACAA+TGG | + | chr5_3:27749656-27749675 | Msa0807010:intron | 35.0% | |
| ATTCCACTCTCCTTATAACA+AGG | + | chr5_3:27749852-27749871 | Msa0807010:CDS | 35.0% | |
| ! | GTCTGAACTACCTTGTTATA+AGG | - | chr5_3:27749865-27749884 | None:intergenic | 35.0% |
| !! | ACAGGGAGCATTATTATCAT+TGG | - | chr5_3:27749919-27749938 | None:intergenic | 35.0% |
| ! | GCAAAAAAGTTTTGCTCGTT+TGG | + | chr5_3:27750045-27750064 | Msa0807010:CDS | 35.0% |
| TGGATAAATGATGAGAACCT+GGG | - | chr5_3:27750094-27750113 | None:intergenic | 35.0% | |
| ATGGATAAATGATGAGAACC+TGG | - | chr5_3:27750095-27750114 | None:intergenic | 35.0% | |
| ! | AAAAGGTCCAAGCTTTTCTT+TGG | - | chr5_3:27750203-27750222 | None:intergenic | 35.0% |
| TGCTTTGGTATCAAAGTAGA+TGG | - | chr5_3:27750433-27750452 | None:intergenic | 35.0% | |
| ACTTTGATACCAAAGCAAGT+TGG | + | chr5_3:27750436-27750455 | Msa0807010:CDS | 35.0% | |
| ! | TACATGTTACCAACTTGCTT+TGG | - | chr5_3:27750448-27750467 | None:intergenic | 35.0% |
| TCACAACAAAAATAGCTCAC+TGG | + | chr5_3:27750504-27750523 | Msa0807010:CDS | 35.0% | |
| !! | ACGCCTTAAAATTTTCAGGA+AGG | + | chr5_3:27750601-27750620 | Msa0807010:intron | 35.0% |
| AAAGTTGAAGTCAAGACATG+AGG | + | chr5_3:27750747-27750766 | Msa0807010:CDS | 35.0% | |
| AAACGAACAGAGATACAGAT+TGG | + | chr5_3:27750931-27750950 | Msa0807010:intron | 35.0% | |
| ! | TTTGTAGGAGCACAACTAAA+AGG | - | chr5_3:27750980-27750999 | None:intergenic | 35.0% |
| AGTGTTTCAATGAACTTCTG+TGG | - | chr5_3:27751176-27751195 | None:intergenic | 35.0% | |
| CATTGAAACACTGAAGCTAA+TGG | + | chr5_3:27751184-27751203 | Msa0807010:CDS | 35.0% | |
| AAGCTAATGGAACATAGGTA+TGG | + | chr5_3:27751197-27751216 | Msa0807010:CDS | 35.0% | |
| ! | CTTGCTTGTTACATAATCCT+TGG | - | chr5_3:27751225-27751244 | None:intergenic | 35.0% |
| CAAGGATTATGTAACAAGCA+AGG | + | chr5_3:27751223-27751242 | Msa0807010:CDS | 35.0% | |
| TGCATAGAATCTACGATACA+TGG | - | chr5_3:27751297-27751316 | None:intergenic | 35.0% | |
| !!! | GTCTTTGTATTGGTTTTGCA+AGG | + | chr5_3:27751440-27751459 | Msa0807010:three_prime_UTR | 35.0% |
| TCATAATAGTTGTGAAGCTC+TGG | + | chr5_3:27751633-27751652 | Msa0807010:three_prime_UTR | 35.0% | |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | + | chr5_3:27751938-27751957 | Msa0807010:intron | 35.0% |
| CAAAAACAACGTGTTTGGTT+TGG | - | chr5_3:27752017-27752036 | None:intergenic | 35.0% | |
| !! | CAAACCAAACACGTTGTTTT+TGG | + | chr5_3:27752015-27752034 | Msa0807010:intron | 35.0% |
| TCTATGCCAATGGAGATATA+GGG | - | chr5_3:27752104-27752123 | None:intergenic | 35.0% | |
| ATCTATGCCAATGGAGATAT+AGG | - | chr5_3:27752105-27752124 | None:intergenic | 35.0% | |
| ACTATCACTATCTATGCCAA+TGG | - | chr5_3:27752114-27752133 | None:intergenic | 35.0% | |
| ATTGGCATAGATAGTGATAG+TGG | + | chr5_3:27752113-27752132 | Msa0807010:three_prime_UTR | 35.0% | |
| ! | AAAAGTAAAGTGTCCTACCT+TGG | + | chr5_3:27752179-27752198 | Msa0807010:three_prime_UTR | 35.0% |
| AGATAGTTAAATGCGCAGAA+GGG | - | chr5_3:27752210-27752229 | None:intergenic | 35.0% | |
| AAGATAGTTAAATGCGCAGA+AGG | - | chr5_3:27752211-27752230 | None:intergenic | 35.0% | |
| !! | GTTTTTGATGCAGGAAGCAT+TGG | + | chr5_3:27747264-27747283 | Msa0807010:intron | 40.0% |
| GTGCTTCGTAGATGATAACT+CGG | - | chr5_3:27747439-27747458 | None:intergenic | 40.0% | |
| TCTCATGTCACATGCTTATC+CGG | - | chr5_3:27747573-27747592 | None:intergenic | 40.0% | |
| GAGATCGATCCTAAACAGAT+TGG | + | chr5_3:27748019-27748038 | Msa0807010:CDS | 40.0% | |
| CTGCATCAAGAATGACTTGA+TGG | - | chr5_3:27748089-27748108 | None:intergenic | 40.0% | |
| GCGAGAATCACATATCCAAA+TGG | - | chr5_3:27748140-27748159 | None:intergenic | 40.0% | |
| TACTACTAAGGTTACGGCAT+CGG | - | chr5_3:27748345-27748364 | None:intergenic | 40.0% | |
| !! | TCAACTAATGCTTGCTATGG+AGG | + | chr5_3:27748587-27748606 | Msa0807010:CDS | 40.0% |
| GTTCAATTGTGTCAATTGGG+TGG | + | chr5_3:27748622-27748641 | Msa0807010:CDS | 40.0% | |
| AATTCATGGGATGGACGTTA+TGG | + | chr5_3:27748650-27748669 | Msa0807010:CDS | 40.0% | |
| !! | CCTGAGAAAGTAAGCATTGA+TGG | - | chr5_3:27748822-27748841 | None:intergenic | 40.0% |
| CCATCAATGCTTACTTTCTC+AGG | + | chr5_3:27748819-27748838 | Msa0807010:intron | 40.0% | |
| GCTGCTATTGCTATGCTAAT+TGG | + | chr5_3:27748880-27748899 | Msa0807010:CDS | 40.0% | |
| !! | TCAAAAGAAATAGGGGCATC+AGG | - | chr5_3:27748907-27748926 | None:intergenic | 40.0% |
| CAAATTGAGGGGAAGTCATA+TGG | + | chr5_3:27748930-27748949 | Msa0807010:CDS | 40.0% | |
| !! | TTGGCTTTGATATGCCATGA+AGG | + | chr5_3:27749128-27749147 | Msa0807010:intron | 40.0% |
| TCATCCACATGTAGCATTTC+AGG | + | chr5_3:27749188-27749207 | Msa0807010:intron | 40.0% | |
| GTATCCTGAAATGCTACATG+TGG | - | chr5_3:27749195-27749214 | None:intergenic | 40.0% | |
| AAAAAATTTCACCAAGGGCC+AGG | - | chr5_3:27749485-27749504 | None:intergenic | 40.0% | |
| TCTTAAATGAGGTCGGAAAC+CGG | + | chr5_3:27749535-27749554 | Msa0807010:intron | 40.0% | |
| TTGCAGATATGAGAAACACG+AGG | + | chr5_3:27749792-27749811 | Msa0807010:intron | 40.0% | |
| TGCAGATATGAGAAACACGA+GGG | + | chr5_3:27749793-27749812 | Msa0807010:intron | 40.0% | |
| ! | CTACCTTGTTATAAGGAGAG+TGG | - | chr5_3:27749858-27749877 | None:intergenic | 40.0% |
| CTCATCATTTATCCATCCTC+TGG | + | chr5_3:27750099-27750118 | Msa0807010:intron | 40.0% | |
| !! | TGATTGTAGCTCTAAGGATG+AGG | + | chr5_3:27750174-27750193 | Msa0807010:intron | 40.0% |
| GAGGTTACCAAAGAAAAGCT+TGG | + | chr5_3:27750193-27750212 | Msa0807010:CDS | 40.0% | |
| !! | CACATACCTTTTCAAGATCC+CGG | - | chr5_3:27750258-27750277 | None:intergenic | 40.0% |
| ! | TAGAGGCTTTGCAACTTGTT+GGG | - | chr5_3:27750392-27750411 | None:intergenic | 40.0% |
| ATAGAGGCTTTGCAACTTGT+TGG | - | chr5_3:27750393-27750412 | None:intergenic | 40.0% | |
| AAAGCCTCTATACGATGAGA+AGG | + | chr5_3:27750402-27750421 | Msa0807010:CDS | 40.0% | |
| TGTACCTTCTCATCGTATAG+AGG | - | chr5_3:27750409-27750428 | None:intergenic | 40.0% | |
| AGGAAAACATTGTGGCAGTT+AGG | - | chr5_3:27750660-27750679 | None:intergenic | 40.0% | |
| TTCAGCAACATCCATCACTT+GGG | - | chr5_3:27750728-27750747 | None:intergenic | 40.0% | |
| TTTCAGCAACATCCATCACT+TGG | - | chr5_3:27750729-27750748 | None:intergenic | 40.0% | |
| GTTTCAATGAACTTCTGTGG+AGG | - | chr5_3:27751173-27751192 | None:intergenic | 40.0% | |
| CACTGAAGCTAATGGAACAT+AGG | + | chr5_3:27751192-27751211 | Msa0807010:CDS | 40.0% | |
| !! | ACGATACATGGTATCGACTT+CGG | - | chr5_3:27751285-27751304 | None:intergenic | 40.0% |
| AATTTGACTCCTGCAGTCAA+CGG | + | chr5_3:27751335-27751354 | Msa0807010:CDS | 40.0% | |
| TTAAGCTCCACATTGAGTGA+AGG | + | chr5_3:27751414-27751433 | Msa0807010:three_prime_UTR | 40.0% | |
| TAAGCTCCACATTGAGTGAA+GGG | + | chr5_3:27751415-27751434 | Msa0807010:three_prime_UTR | 40.0% | |
| GTGAAGGGTAGTCTTTGTAT+TGG | + | chr5_3:27751430-27751449 | Msa0807010:three_prime_UTR | 40.0% | |
| AGCTAGGATTTGTAGCTTCA+TGG | + | chr5_3:27751954-27751973 | Msa0807010:intron | 40.0% | |
| ! | GCTTCATGGAGAATTGCTTT+TGG | + | chr5_3:27751968-27751987 | Msa0807010:intron | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | + | chr5_3:27751971-27751990 | Msa0807010:intron | 40.0% |
| CTAGCCAAAAACAACGTGTT+TGG | - | chr5_3:27752022-27752041 | None:intergenic | 40.0% | |
| ! | GCACTGTAGAGAATTGCTTT+TGG | + | chr5_3:27752053-27752072 | Msa0807010:intron | 40.0% |
| !! | TGTAGAGAATTGCTTTTGGC+TGG | + | chr5_3:27752057-27752076 | Msa0807010:intron | 40.0% |
| !! | GTAGAGAATTGCTTTTGGCT+GGG | + | chr5_3:27752058-27752077 | Msa0807010:intron | 40.0% |
| !! | TAGATAGTGATAGTGGTCAC+AGG | + | chr5_3:27752120-27752139 | Msa0807010:three_prime_UTR | 40.0% |
| ATTCCAACGTTCTTTGCTGC+TGG | - | chr5_3:27746837-27746856 | None:intergenic | 45.0% | |
| GTTACCTGTTGAACGCAGTT+AGG | - | chr5_3:27746885-27746904 | None:intergenic | 45.0% | |
| !! | TTTGATGCAGGAAGCATTGG+AGG | + | chr5_3:27747267-27747286 | Msa0807010:intron | 45.0% |
| ! | CTCATGATGGTGCGAGTAAA+GGG | + | chr5_3:27747290-27747309 | Msa0807010:CDS | 45.0% |
| AACTGAGACGTGTCAAACAC+CGG | + | chr5_3:27747551-27747570 | Msa0807010:intron | 45.0% | |
| TTGCATCTGCAGTTTGACAG+TGG | + | chr5_3:27747973-27747992 | Msa0807010:intron | 45.0% | |
| ! | TCCTAAACAGATTGGTCGTC+TGG | + | chr5_3:27748027-27748046 | Msa0807010:CDS | 45.0% |
| TCCAGACGACCAATCTGTTT+AGG | - | chr5_3:27748031-27748050 | None:intergenic | 45.0% | |
| GTGATTCTCGCTGTCAATGT+AGG | + | chr5_3:27748149-27748168 | Msa0807010:intron | 45.0% | |
| ACTACTAAGGTTACGGCATC+GGG | - | chr5_3:27748344-27748363 | None:intergenic | 45.0% | |
| GGTCGCTACTACTAAGGTTA+CGG | - | chr5_3:27748351-27748370 | None:intergenic | 45.0% | |
| ATTGGGTGGAGAGCAATTCA+TGG | + | chr5_3:27748636-27748655 | Msa0807010:CDS | 45.0% | |
| TTGGGTGGAGAGCAATTCAT+GGG | + | chr5_3:27748637-27748656 | Msa0807010:CDS | 45.0% | |
| CTTTCTCAGGTCTATGCTGA+AGG | + | chr5_3:27748832-27748851 | Msa0807010:intron | 45.0% | |
| TGACCTTGCTAGTGAATACC+CGG | + | chr5_3:27748978-27748997 | Msa0807010:CDS | 45.0% | |
| TTACCGGGTATTCACTAGCA+AGG | - | chr5_3:27748984-27749003 | None:intergenic | 45.0% | |
| TTTGTGCTGTAGGTTGTCGA+CGG | + | chr5_3:27749239-27749258 | Msa0807010:intron | 45.0% | |
| AGCAAGTATCAAGAGCCATG+AGG | - | chr5_3:27749286-27749305 | None:intergenic | 45.0% | |
| AAATGCTGCATAGATGGACG+CGG | - | chr5_3:27750473-27750492 | None:intergenic | 45.0% | |
| GGATGCAAATGCTGCATAGA+TGG | - | chr5_3:27750479-27750498 | None:intergenic | 45.0% | |
| GTCAAACATTGCCCAAGTGA+TGG | + | chr5_3:27750714-27750733 | Msa0807010:CDS | 45.0% | |
| GTCAACGGTTTGTCTGTCAA+TGG | + | chr5_3:27751350-27751369 | Msa0807010:CDS | 45.0% | |
| AGACTACCCTTCACTCAATG+TGG | - | chr5_3:27751424-27751443 | None:intergenic | 45.0% | |
| ATGGAGATATAGGGCCTGTT+TGG | - | chr5_3:27752095-27752114 | None:intergenic | 45.0% | |
| AACAGGCCCTATATCTCCAT+TGG | + | chr5_3:27752095-27752114 | Msa0807010:intron | 45.0% | |
| AGTTAAATGCGCAGAAGGGT+GGG | - | chr5_3:27752206-27752225 | None:intergenic | 45.0% | |
| TAGTTAAATGCGCAGAAGGG+TGG | - | chr5_3:27752207-27752226 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTAATTAGAAAAA+AGG | + | chr5_3:27747150-27747169 | Msa0807010:intron | 5.0% |
| CCTGTTGAACGCAGTTAGGA+GGG | - | chr5_3:27746881-27746900 | None:intergenic | 50.0% | |
| ACCTGTTGAACGCAGTTAGG+AGG | - | chr5_3:27746882-27746901 | None:intergenic | 50.0% | |
| !! | GAAGCATTGGAGGCTCATGA+TGG | + | chr5_3:27747277-27747296 | Msa0807010:CDS | 50.0% |
| ! | GCTCATGATGGTGCGAGTAA+AGG | + | chr5_3:27747289-27747308 | Msa0807010:CDS | 50.0% |
| ! | CAGATTGGTCGTCTGGAAGT+CGG | + | chr5_3:27748034-27748053 | Msa0807010:CDS | 50.0% |
| GTCACTGGTCGCTACTACTA+AGG | - | chr5_3:27748357-27748376 | None:intergenic | 50.0% | |
| GTGGAGAGCAATTCATGGGA+TGG | + | chr5_3:27748641-27748660 | Msa0807010:CDS | 50.0% | |
| GGGTATTCACTAGCAAGGTC+AGG | - | chr5_3:27748979-27748998 | None:intergenic | 50.0% | |
| ! | GATGCAAGTTGAGTCTGACC+TGG | + | chr5_3:27749459-27749478 | Msa0807010:intron | 50.0% |
| TCACCAAAGGACACATTGGC+AGG | - | chr5_3:27749563-27749582 | None:intergenic | 50.0% | |
| TGGTCTTCAGCGACTTCTTG+AGG | + | chr5_3:27750065-27750084 | Msa0807010:CDS | 50.0% | |
| ! | GCTTTGGTAGCTCTCGTCAT+CGG | - | chr5_3:27750236-27750255 | None:intergenic | 50.0% |
| ATGACGAGAGCTACCAAAGC+CGG | + | chr5_3:27750236-27750255 | Msa0807010:CDS | 50.0% | |
| !! | CCTTTTCAAGATCCCGGCTT+TGG | - | chr5_3:27750252-27750271 | None:intergenic | 50.0% |
| CCAAAGCCGGGATCTTGAAA+AGG | + | chr5_3:27750249-27750268 | Msa0807010:CDS | 50.0% | |
| ! | GGAACATAGGTATGGTGCCA+AGG | + | chr5_3:27751205-27751224 | Msa0807010:CDS | 50.0% |
| ! | AAGCAAGGACAGCAGCCTTT+TGG | + | chr5_3:27751238-27751257 | Msa0807010:CDS | 50.0% |
| AGAATGTGCCTGGAGCCAAA+AGG | - | chr5_3:27751256-27751275 | None:intergenic | 50.0% | |
| TCGGTGAGAAAGAATGTGCC+TGG | - | chr5_3:27751266-27751285 | None:intergenic | 50.0% | |
| ! | ACAGACAAACCGTTGACTGC+AGG | - | chr5_3:27751347-27751366 | None:intergenic | 50.0% |
| GTCACAGGTGCTAGGAAATC+TGG | + | chr5_3:27752149-27752168 | Msa0807010:three_prime_UTR | 50.0% | |
| GCACCAGCAGCAAAGAACGT+TGG | + | chr5_3:27746831-27746850 | Msa0807010:CDS | 55.0% | |
| CCCTCCTAACTGCGTTCAAC+AGG | + | chr5_3:27746878-27746897 | Msa0807010:CDS | 55.0% | |
| CACATGTGCCAGTGTCGTGT+TGG | + | chr5_3:27747521-27747540 | Msa0807010:intron | 55.0% | |
| ! | TGCCAGTGTCGTGTTGGTGT+CGG | + | chr5_3:27747527-27747546 | Msa0807010:intron | 55.0% |
| AGCAATAGCAGCAGCTCCTC+CGG | - | chr5_3:27748872-27748891 | None:intergenic | 55.0% | |
| AAGTTGAGTCTGACCTGGCC+TGG | + | chr5_3:27749464-27749483 | Msa0807010:intron | 55.0% | |
| AAGGACACATTGGCAGGCAC+CGG | - | chr5_3:27749557-27749576 | None:intergenic | 55.0% | |
| GTGCCTGCCAATGTGTCCTT+TGG | + | chr5_3:27749557-27749576 | Msa0807010:intron | 55.0% | |
| GCGACTTCTTGAGGAATCCC+AGG | + | chr5_3:27750074-27750093 | Msa0807010:CDS | 55.0% | |
| TGACGAGAGCTACCAAAGCC+GGG | + | chr5_3:27750237-27750256 | Msa0807010:CDS | 55.0% | |
| GGGCAGAAGCTGAACCAAAC+AGG | + | chr5_3:27752078-27752097 | Msa0807010:intron | 55.0% | |
| ! | GCCAGTGTCGTGTTGGTGTC+GGG | + | chr5_3:27747528-27747547 | Msa0807010:intron | 60.0% |
| TCCCGACACCAACACGACAC+TGG | - | chr5_3:27747532-27747551 | None:intergenic | 60.0% | |
| GAAGGTCCTGCTCGACCTAC+CGG | + | chr5_3:27748850-27748869 | Msa0807010:CDS | 60.0% | |
| ATAGCAGCAGCTCCTCCGGT+AGG | - | chr5_3:27748868-27748887 | None:intergenic | 60.0% | |
| ATTTCACCAAGGGCCAGGCC+AGG | - | chr5_3:27749480-27749499 | None:intergenic | 60.0% | |
| !!! | GACAGCAGCCTTTTGGCTCC+AGG | + | chr5_3:27751245-27751264 | Msa0807010:CDS | 60.0% |
| GGTCACAGGCTCACAGTCAC+AGG | + | chr5_3:27752134-27752153 | Msa0807010:three_prime_UTR | 60.0% | |
| GGCTCACAGTCACAGGTGCT+AGG | + | chr5_3:27752141-27752160 | Msa0807010:three_prime_UTR | 60.0% | |
| CAGAAGGGTGGGTCCAAGGT+AGG | - | chr5_3:27752195-27752214 | None:intergenic | 60.0% | |
| TGCGCAGAAGGGTGGGTCCA+AGG | - | chr5_3:27752199-27752218 | None:intergenic | 65.0% | |
| GGTCCTGCTCGACCTACCGG+AGG | + | chr5_3:27748853-27748872 | Msa0807010:CDS | 70.0% | |
| GCTCCTCCGGTAGGTCGAGC+AGG | - | chr5_3:27748859-27748878 | None:intergenic | 70.0% | |
| GTCTGACCTGGCCTGGCCCT+TGG | + | chr5_3:27749471-27749490 | Msa0807010:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 27746708 | 27752250 | 27746708 | ID=Msa0807010;Name=Msa0807010 |
| chr5_3 | mRNA | 27746708 | 27752250 | 27746708 | ID=Msa0807010-mRNA-1;Parent=Msa0807010;Name=Msa0807010-mRNA-1;_AED=0.13;_eAED=0.13;_QI=120|0.91|0.92|1|0.91|0.84|13|425|457 |
| chr5_3 | exon | 27746708 | 27746899 | 27746708 | ID=Msa0807010-mRNA-1:exon:9792;Parent=Msa0807010-mRNA-1 |
| chr5_3 | exon | 27747277 | 27747344 | 27747277 | ID=Msa0807010-mRNA-1:exon:9793;Parent=Msa0807010-mRNA-1 |
| chr5_3 | exon | 27747985 | 27748117 | 27747985 | ID=Msa0807010-mRNA-1:exon:9794;Parent=Msa0807010-mRNA-1 |
| chr5_3 | exon | 27748554 | 27748697 | 27748554 | ID=Msa0807010-mRNA-1:exon:9795;Parent=Msa0807010-mRNA-1 |
| chr5_3 | exon | 27748841 | 27748999 | 27748841 | ID=Msa0807010-mRNA-1:exon:9796;Parent=Msa0807010-mRNA-1 |
| chr5_3 | exon | 27749251 | 27749324 | 27749251 | ID=Msa0807010-mRNA-1:exon:9797;Parent=Msa0807010-mRNA-1 |
| chr5_3 | exon | 27749798 | 27749873 | 27749798 | ID=Msa0807010-mRNA-1:exon:9798;Parent=Msa0807010-mRNA-1 |
| chr5_3 | exon | 27750040 | 27750095 | 27750040 | ID=Msa0807010-mRNA-1:exon:9799;Parent=Msa0807010-mRNA-1 |
| chr5_3 | exon | 27750183 | 27750270 | 27750183 | ID=Msa0807010-mRNA-1:exon:9800;Parent=Msa0807010-mRNA-1 |
| chr5_3 | exon | 27750385 | 27750525 | 27750385 | ID=Msa0807010-mRNA-1:exon:9801;Parent=Msa0807010-mRNA-1 |
| chr5_3 | exon | 27750619 | 27750768 | 27750619 | ID=Msa0807010-mRNA-1:exon:9802;Parent=Msa0807010-mRNA-1 |
| chr5_3 | exon | 27751167 | 27751660 | 27751167 | ID=Msa0807010-mRNA-1:exon:9803;Parent=Msa0807010-mRNA-1 |
| chr5_3 | exon | 27752107 | 27752250 | 27752107 | ID=Msa0807010-mRNA-1:exon:9804;Parent=Msa0807010-mRNA-1 |
| chr5_3 | five_prime_UTR | 27746708 | 27746827 | 27746708 | ID=Msa0807010-mRNA-1:five_prime_utr;Parent=Msa0807010-mRNA-1 |
| chr5_3 | CDS | 27746828 | 27746899 | 27746828 | ID=Msa0807010-mRNA-1:cds;Parent=Msa0807010-mRNA-1 |
| chr5_3 | CDS | 27747277 | 27747344 | 27747277 | ID=Msa0807010-mRNA-1:cds;Parent=Msa0807010-mRNA-1 |
| chr5_3 | CDS | 27747985 | 27748117 | 27747985 | ID=Msa0807010-mRNA-1:cds;Parent=Msa0807010-mRNA-1 |
| chr5_3 | CDS | 27748554 | 27748697 | 27748554 | ID=Msa0807010-mRNA-1:cds;Parent=Msa0807010-mRNA-1 |
| chr5_3 | CDS | 27748841 | 27748999 | 27748841 | ID=Msa0807010-mRNA-1:cds;Parent=Msa0807010-mRNA-1 |
| chr5_3 | CDS | 27749251 | 27749324 | 27749251 | ID=Msa0807010-mRNA-1:cds;Parent=Msa0807010-mRNA-1 |
| chr5_3 | CDS | 27749798 | 27749873 | 27749798 | ID=Msa0807010-mRNA-1:cds;Parent=Msa0807010-mRNA-1 |
| chr5_3 | CDS | 27750040 | 27750095 | 27750040 | ID=Msa0807010-mRNA-1:cds;Parent=Msa0807010-mRNA-1 |
| chr5_3 | CDS | 27750183 | 27750270 | 27750183 | ID=Msa0807010-mRNA-1:cds;Parent=Msa0807010-mRNA-1 |
| chr5_3 | CDS | 27750385 | 27750525 | 27750385 | ID=Msa0807010-mRNA-1:cds;Parent=Msa0807010-mRNA-1 |
| chr5_3 | CDS | 27750619 | 27750768 | 27750619 | ID=Msa0807010-mRNA-1:cds;Parent=Msa0807010-mRNA-1 |
| chr5_3 | CDS | 27751167 | 27751379 | 27751167 | ID=Msa0807010-mRNA-1:cds;Parent=Msa0807010-mRNA-1 |
| chr5_3 | three_prime_UTR | 27751380 | 27751660 | 27751380 | ID=Msa0807010-mRNA-1:three_prime_utr;Parent=Msa0807010-mRNA-1 |
| chr5_3 | three_prime_UTR | 27752107 | 27752250 | 27752107 | ID=Msa0807010-mRNA-1:three_prime_utr;Parent=Msa0807010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
