Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0216360 | XP_013464731.1 | 91.688 | 385 | 31 | 1 | 1 | 384 | 1 | 385 | 0.0 | 675 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0216360 | sp|Q84WQ5|CBSX5_ARATH | 51.523 | 394 | 175 | 8 | 1 | 383 | 1 | 389 | 8.22e-120 | 355 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0216360 | A0A072VAY1 | 91.688 | 385 | 31 | 1 | 1 | 384 | 1 | 385 | 0.0 | 675 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0143590 | Msa0216360 | 0.805008 | 1.642284e-49 | -8.615850e-47 |
Msa0207680 | Msa0216360 | 0.827189 | 1.795296e-54 | -8.615850e-47 |
Msa0216360 | Msa0256540 | 0.821688 | 3.534448e-53 | -8.615850e-47 |
Msa0216360 | Msa0256550 | 0.859268 | 4.651099e-63 | -8.615850e-47 |
Msa0216360 | Msa0334310 | 0.815196 | 1.046484e-51 | -8.615850e-47 |
Msa0216360 | Msa0334320 | 0.805582 | 1.245260e-49 | -8.615850e-47 |
Msa0216360 | Msa0386880 | 0.814779 | 1.294513e-51 | -8.615850e-47 |
Msa0216360 | Msa0575380 | 0.817724 | 2.842768e-52 | -8.615850e-47 |
Msa0216360 | Msa0576180 | 0.826828 | 2.189443e-54 | -8.615850e-47 |
Msa0216360 | Msa0610700 | -0.800029 | 1.745490e-48 | -8.615850e-47 |
Msa0216360 | Msa0654420 | 0.815419 | 9.335421e-52 | -8.615850e-47 |
Msa0216360 | Msa0930210 | 0.834185 | 3.469025e-56 | -8.615850e-47 |
Msa0216360 | Msa1013190 | 0.804369 | 2.232513e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0216360 | MtrunA17_Chr2g0317881 | 91.688 | 385 | 31 | 1 | 1 | 384 | 1 | 385 | 0.0 | 675 |
Msa0216360 | MtrunA17_Chr2g0317871 | 80.720 | 389 | 70 | 2 | 1 | 384 | 1 | 389 | 0.0 | 608 |
Msa0216360 | MtrunA17_Chr2g0281871 | 47.901 | 405 | 180 | 7 | 1 | 384 | 1 | 395 | 4.91e-119 | 350 |
Msa0216360 | MtrunA17_Chr7g0249131 | 28.029 | 421 | 231 | 12 | 1 | 374 | 1 | 396 | 3.62e-33 | 128 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0216360 | AT5G53750.1 | 50.852 | 411 | 169 | 10 | 1 | 383 | 1 | 406 | 1.77e-121 | 357 |
Msa0216360 | AT4G27460.1 | 51.523 | 394 | 175 | 8 | 1 | 383 | 1 | 389 | 8.36e-121 | 355 |
Msa0216360 | AT1G65320.1 | 27.570 | 428 | 239 | 13 | 1 | 380 | 1 | 405 | 4.75e-30 | 120 |
Find 97 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCATCTTGAATCTTCTTCT+AGG | 0.276693 | 2_1:-62141685 | Msa0216360:intron |
ACGAAACTTTCGTCAGTGTT+TGG | 0.318070 | 2_1:-62141868 | Msa0216360:CDS |
TAATCGGTGGCGAGCACATC+GGG | 0.334173 | 2_1:+62141294 | None:intergenic |
TTCTAAAGCTCTTAAAGCTT+TGG | 0.338761 | 2_1:-62141744 | Msa0216360:CDS |
AAGGTTGAAGGAGAAGAATT+TGG | 0.348572 | 2_1:-62141040 | Msa0216360:CDS |
GAGGAGAGTCCGACGAGGTT+AGG | 0.358176 | 2_1:-62140946 | Msa0216360:CDS |
CACAGCAATCAAAGAGCTCT+TGG | 0.367612 | 2_1:+62140855 | None:intergenic |
TTTGTCCGCAGGGGACTTGA+TGG | 0.380969 | 2_1:-62141115 | Msa0216360:CDS |
CTCCGCGTTCATTCTTTGTA+TGG | 0.381602 | 2_1:-62142005 | Msa0216360:exon |
ACGTTGAAATAGACTTCAAC+GGG | 0.384466 | 2_1:+62141933 | None:intergenic |
AAAGCTTTAAGAGCTTTAGA+AGG | 0.390851 | 2_1:+62141746 | None:intergenic |
AGATAACTCATGTGTCAAAA+AGG | 0.390942 | 2_1:+62141976 | None:intergenic |
GAGGATGATTGCAGCTTAGT+TGG | 0.425795 | 2_1:-62140787 | Msa0216360:CDS |
CGCAAGGTCATCGAGCTATT+CGG | 0.427267 | 2_1:-62140917 | Msa0216360:CDS |
AGGTTCTTGCTTGGTTCCAT+TGG | 0.434543 | 2_1:-62141369 | Msa0216360:CDS |
TTCAGCACCGTTGTGGTTGT+TGG | 0.457385 | 2_1:+62141422 | None:intergenic |
CTCATAGAGTGAACTACTTG+TGG | 0.459777 | 2_1:-62140816 | Msa0216360:CDS |
TCATAGAGTGAACTACTTGT+GGG | 0.462004 | 2_1:-62140815 | Msa0216360:CDS |
AGCCATTGATCTTATACTCC+AGG | 0.463049 | 2_1:-62141529 | Msa0216360:CDS |
TTCCTTGACCAGTGAGGTGT+TGG | 0.464148 | 2_1:-62140986 | Msa0216360:CDS |
CCACAAGATTCTGTGCTCCC+TGG | 0.482496 | 2_1:+62141511 | None:intergenic |
GATGATATCGAGAGAATCAA+TGG | 0.482501 | 2_1:+62141320 | None:intergenic |
GATGTGATCAGGTTCTTGCT+TGG | 0.488754 | 2_1:-62141378 | Msa0216360:CDS |
AGAGAATCAATGGAGTATGC+TGG | 0.500746 | 2_1:+62141330 | None:intergenic |
GAACTACTTGTGGGTTATTG+AGG | 0.502090 | 2_1:-62140806 | Msa0216360:CDS |
ACAAGTCTCACAAGATCCTC+TGG | 0.503032 | 2_1:+62141069 | None:intergenic |
GTCTCACAAGATCCTCTGGT+GGG | 0.511904 | 2_1:+62141073 | None:intergenic |
AAGTTTCGTCGGAGCTTCTG+AGG | 0.513062 | 2_1:+62141882 | None:intergenic |
TCCCTGGAGTATAAGATCAA+TGG | 0.516231 | 2_1:+62141527 | None:intergenic |
ACTTGTAAAGGCAAGGTTGA+AGG | 0.518293 | 2_1:-62141052 | Msa0216360:CDS |
GCGATCACAACTTTGTCCGC+AGG | 0.523015 | 2_1:-62141126 | Msa0216360:CDS |
ACAGCAATCAAAGAGCTCTT+GGG | 0.525945 | 2_1:+62140856 | None:intergenic |
GACTTCAATTGCCTCGGCAA+CGG | 0.536075 | 2_1:+62141904 | None:intergenic |
GCCTCAACGGACGAAGACGC+GGG | 0.537089 | 2_1:+62141264 | None:intergenic |
TCTGAGGACTTCAATTGCCT+CGG | 0.537513 | 2_1:+62141898 | None:intergenic |
TGCGGTCGTTGTCAATGTGT+TGG | 0.538310 | 2_1:-62141827 | Msa0216360:CDS |
TGCCTCAACGGACGAAGACG+CGG | 0.542912 | 2_1:+62141263 | None:intergenic |
GGCCAACACCTCACTGGTCA+AGG | 0.543007 | 2_1:+62140984 | None:intergenic |
CGACTTTGAGATTGCCTCAA+CGG | 0.550282 | 2_1:+62141251 | None:intergenic |
TAACACAAGAGGATGTGATC+AGG | 0.550433 | 2_1:-62141389 | Msa0216360:CDS |
GCGGTCGTTGTCAATGTGTT+GGG | 0.553823 | 2_1:-62141826 | Msa0216360:CDS |
GAGAATCAATGGAGTATGCT+GGG | 0.555251 | 2_1:+62141331 | None:intergenic |
AACGTTGGCTACCGTTGCCG+AGG | 0.562278 | 2_1:-62141915 | Msa0216360:CDS |
ACAACAAGACCATCAACCTT+AGG | 0.563973 | 2_1:+62141707 | None:intergenic |
TTGTGAGACTTGTAAAGGCA+AGG | 0.564406 | 2_1:-62141059 | Msa0216360:CDS |
TCAATGGAGTATGCTGGGAG+TGG | 0.567874 | 2_1:+62141336 | None:intergenic |
ACAACGGTGCTGAATTCTGT+TGG | 0.574350 | 2_1:-62141413 | Msa0216360:CDS |
GCGTGCTTTCCTAACCTCGT+CGG | 0.580425 | 2_1:+62140937 | None:intergenic |
AGGCGTTGAGAAAGTTGAAA+CGG | 0.581259 | 2_1:+62142026 | None:intergenic |
AGACGAGGCCAACACCTCAC+TGG | 0.581425 | 2_1:+62140978 | None:intergenic |
GGATCTTGTGAGACTTGTAA+AGG | 0.582402 | 2_1:-62141064 | Msa0216360:CDS |
GTTGAAGTCTATTTCAACGT+TGG | 0.583473 | 2_1:-62141930 | Msa0216360:CDS |
GCCATTGATCTTATACTCCA+GGG | 0.586242 | 2_1:-62141528 | Msa0216360:CDS |
ATCACAACAAGCAAGTGTGA+AGG | 0.587369 | 2_1:+62141164 | None:intergenic |
GACAACGACCGCATTCAGAA+TGG | 0.588165 | 2_1:+62141837 | None:intergenic |
GAGTTATCTGAACTCTGTCT+CGG | 0.589665 | 2_1:-62141962 | Msa0216360:CDS |
TCACAACAAGCAAGTGTGAA+GGG | 0.590736 | 2_1:+62141165 | None:intergenic |
GTTGCAATTGTCGACAGTGA+TGG | 0.591666 | 2_1:-62141210 | Msa0216360:CDS |
CGAGGTTAGGAAAGCACGCA+AGG | 0.592136 | 2_1:-62140933 | Msa0216360:CDS |
AACAGAATTCAGCACCGTTG+TGG | 0.599089 | 2_1:+62141415 | None:intergenic |
CCTCAACGGACGAAGACGCG+GGG | 0.601143 | 2_1:+62141265 | None:intergenic |
ATTCTGTTGGTTAACACAAG+AGG | 0.602333 | 2_1:-62141400 | Msa0216360:CDS |
CGATCACAACTTTGTCCGCA+GGG | 0.602716 | 2_1:-62141125 | Msa0216360:CDS |
CCCCGCGTCTTCGTCCGTTG+AGG | 0.604374 | 2_1:-62141265 | Msa0216360:CDS |
TTGCAATTGTCGACAGTGAT+GGG | 0.605549 | 2_1:-62141209 | Msa0216360:CDS |
AACACTGACGAAAGTTTCGT+CGG | 0.613598 | 2_1:+62141871 | None:intergenic |
CGTCGGACTCTCCTCGTCAG+AGG | 0.614308 | 2_1:+62140954 | None:intergenic |
TGGGGCACCACAGTCAATGT+AGG | 0.615981 | 2_1:+62141092 | None:intergenic |
GACAGTGATGGGACATTCGT+CGG | 0.616167 | 2_1:-62141198 | Msa0216360:CDS |
AACGTTGAAATAGACTTCAA+CGG | 0.620008 | 2_1:+62141932 | None:intergenic |
GAGTGGACTGAAGTGGCCAA+TGG | 0.621613 | 2_1:+62141353 | None:intergenic |
ACTTGCTTGTTGTGATGAGA+CGG | 0.623722 | 2_1:-62141157 | Msa0216360:CDS |
ATGTGTTGGGAAAGTTTGCA+TGG | 0.628591 | 2_1:-62141813 | Msa0216360:CDS |
CTCCTCGTCAGAGGAAGACG+AGG | 0.630235 | 2_1:+62140963 | None:intergenic |
TGACTGTGGTGCCCCACCAG+AGG | 0.632561 | 2_1:-62141085 | Msa0216360:CDS |
TCTCACAAGATCCTCTGGTG+GGG | 0.633891 | 2_1:+62141074 | None:intergenic |
TGCGGACAAAGTTGTGATCG+CGG | 0.639568 | 2_1:+62141128 | None:intergenic |
GTAATCGGTGGCGAGCACAT+CGG | 0.640941 | 2_1:+62141293 | None:intergenic |
TTGATGGCCTACATTGACTG+TGG | 0.644512 | 2_1:-62141099 | Msa0216360:CDS |
AGTCTCACAAGATCCTCTGG+TGG | 0.651361 | 2_1:+62141072 | None:intergenic |
CCAGGGAGCACAGAATCTTG+TGG | 0.656446 | 2_1:-62141511 | Msa0216360:CDS |
AGCTGTGACCATTCTGAATG+CGG | 0.668057 | 2_1:-62141845 | Msa0216360:CDS |
GCTATTCGGCAAGATTTGTG+AGG | 0.668957 | 2_1:-62140903 | Msa0216360:CDS |
GGCCTCGTCTTCCTCTGACG+AGG | 0.669844 | 2_1:-62140965 | Msa0216360:CDS |
AAGATTTGTGAGGAATGTAG+AGG | 0.675720 | 2_1:-62140893 | Msa0216360:CDS |
TTTGACTTCCTTGACCAGTG+AGG | 0.690884 | 2_1:-62140992 | Msa0216360:CDS |
GTTGAAATAGACTTCAACGG+GGG | 0.695337 | 2_1:+62141935 | None:intergenic |
TCAACAACCAACAACCACAA+CGG | 0.695557 | 2_1:-62141429 | Msa0216360:CDS |
CTCAACGGACGAAGACGCGG+GGG | 0.703875 | 2_1:+62141266 | None:intergenic |
TGCCATACAAAGAATGAACG+CGG | 0.716347 | 2_1:+62142003 | None:intergenic |
AATCGGTGGCGAGCACATCG+GGG | 0.730338 | 2_1:+62141295 | None:intergenic |
ATGCTGGGAGTGGACTGAAG+TGG | 0.731672 | 2_1:+62141346 | None:intergenic |
CATACAAAGAATGAACGCGG+AGG | 0.740021 | 2_1:+62142006 | None:intergenic |
CTGACGAGGAGAGTCCGACG+AGG | 0.744361 | 2_1:-62140951 | Msa0216360:CDS |
GATCACAACTTTGTCCGCAG+GGG | 0.750662 | 2_1:-62141124 | Msa0216360:CDS |
GTAGGCCATCAAGTCCCCTG+CGG | 0.766683 | 2_1:+62141110 | None:intergenic |
CGTTGAAATAGACTTCAACG+GGG | 0.770457 | 2_1:+62141934 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CATCAAAATAACAATAATGA+GGG | + | chr2_1:62141176-62141195 | None:intergenic | 20.0% |
!! | ACATCAAAATAACAATAATG+AGG | + | chr2_1:62141177-62141196 | None:intergenic | 20.0% |
!!! | TACTTTTTCTAATATCTTGA+AGG | - | chr2_1:62141982-62142001 | Msa0216360:CDS | 20.0% |
!! | CATCAAAATAACAATAATGA+GGG | + | chr2_1:62141176-62141195 | None:intergenic | 20.0% |
!! | ACATCAAAATAACAATAATG+AGG | + | chr2_1:62141177-62141196 | None:intergenic | 20.0% |
!!! | TACTTTTTCTAATATCTTGA+AGG | - | chr2_1:62141982-62142001 | Msa0216360:CDS | 20.0% |
!!! | ATGTAACAATGTTTTTGCTT+TGG | - | chr2_1:62142047-62142066 | Msa0216360:five_prime_UTR | 25.0% |
!!! | ATGTAACAATGTTTTTGCTT+TGG | - | chr2_1:62142047-62142066 | Msa0216360:five_prime_UTR | 25.0% |
AGATAACTCATGTGTCAAAA+AGG | + | chr2_1:62140767-62140786 | None:intergenic | 30.0% | |
AACGTTGAAATAGACTTCAA+CGG | + | chr2_1:62140811-62140830 | None:intergenic | 30.0% | |
!!! | AAAGATTTTCTGGTTTGCAA+AGG | + | chr2_1:62140969-62140988 | None:intergenic | 30.0% |
! | GAAGGATACAAAAGATTTTC+TGG | + | chr2_1:62140979-62140998 | None:intergenic | 30.0% |
!! | AAAGCTTTAAGAGCTTTAGA+AGG | + | chr2_1:62140997-62141016 | None:intergenic | 30.0% |
!! | TTCTAAAGCTCTTAAAGCTT+TGG | - | chr2_1:62140996-62141015 | Msa0216360:CDS | 30.0% |
TTCATCTTGAATCTTCTTCT+AGG | - | chr2_1:62141055-62141074 | Msa0216360:CDS | 30.0% | |
!! | CCTCTTTTTGTTTGCAAAAT+TGG | + | chr2_1:62141257-62141276 | None:intergenic | 30.0% |
! | CCAATTTTGCAAACAAAAAG+AGG | - | chr2_1:62141254-62141273 | Msa0216360:CDS | 30.0% |
! | ATTTTGCAAACAAAAAGAGG+AGG | - | chr2_1:62141257-62141276 | Msa0216360:CDS | 30.0% |
AGATAACTCATGTGTCAAAA+AGG | + | chr2_1:62140767-62140786 | None:intergenic | 30.0% | |
AACGTTGAAATAGACTTCAA+CGG | + | chr2_1:62140811-62140830 | None:intergenic | 30.0% | |
!!! | AAAGATTTTCTGGTTTGCAA+AGG | + | chr2_1:62140969-62140988 | None:intergenic | 30.0% |
! | GAAGGATACAAAAGATTTTC+TGG | + | chr2_1:62140979-62140998 | None:intergenic | 30.0% |
!! | AAAGCTTTAAGAGCTTTAGA+AGG | + | chr2_1:62140997-62141016 | None:intergenic | 30.0% |
!! | TTCTAAAGCTCTTAAAGCTT+TGG | - | chr2_1:62140996-62141015 | Msa0216360:CDS | 30.0% |
TTCATCTTGAATCTTCTTCT+AGG | - | chr2_1:62141055-62141074 | Msa0216360:CDS | 30.0% | |
!! | CCTCTTTTTGTTTGCAAAAT+TGG | + | chr2_1:62141257-62141276 | None:intergenic | 30.0% |
! | CCAATTTTGCAAACAAAAAG+AGG | - | chr2_1:62141254-62141273 | Msa0216360:CDS | 30.0% |
! | ATTTTGCAAACAAAAAGAGG+AGG | - | chr2_1:62141257-62141276 | Msa0216360:CDS | 30.0% |
ACGTTGAAATAGACTTCAAC+GGG | + | chr2_1:62140810-62140829 | None:intergenic | 35.0% | |
GTTGAAGTCTATTTCAACGT+TGG | - | chr2_1:62140810-62140829 | Msa0216360:CDS | 35.0% | |
! | ATTCTGTTGGTTAACACAAG+AGG | - | chr2_1:62141340-62141359 | Msa0216360:CDS | 35.0% |
GATGATATCGAGAGAATCAA+TGG | + | chr2_1:62141423-62141442 | None:intergenic | 35.0% | |
AAGGTTGAAGGAGAAGAATT+TGG | - | chr2_1:62141700-62141719 | Msa0216360:CDS | 35.0% | |
AAGATTTGTGAGGAATGTAG+AGG | - | chr2_1:62141847-62141866 | Msa0216360:CDS | 35.0% | |
TCATAGAGTGAACTACTTGT+GGG | - | chr2_1:62141925-62141944 | Msa0216360:CDS | 35.0% | |
ACGTTGAAATAGACTTCAAC+GGG | + | chr2_1:62140810-62140829 | None:intergenic | 35.0% | |
GTTGAAGTCTATTTCAACGT+TGG | - | chr2_1:62140810-62140829 | Msa0216360:CDS | 35.0% | |
! | ATTCTGTTGGTTAACACAAG+AGG | - | chr2_1:62141340-62141359 | Msa0216360:CDS | 35.0% |
GATGATATCGAGAGAATCAA+TGG | + | chr2_1:62141423-62141442 | None:intergenic | 35.0% | |
AAGGTTGAAGGAGAAGAATT+TGG | - | chr2_1:62141700-62141719 | Msa0216360:CDS | 35.0% | |
AAGATTTGTGAGGAATGTAG+AGG | - | chr2_1:62141847-62141866 | Msa0216360:CDS | 35.0% | |
TCATAGAGTGAACTACTTGT+GGG | - | chr2_1:62141925-62141944 | Msa0216360:CDS | 35.0% | |
!! | AGGCGTTGAGAAAGTTGAAA+CGG | + | chr2_1:62140717-62140736 | None:intergenic | 40.0% |
TGCCATACAAAGAATGAACG+CGG | + | chr2_1:62140740-62140759 | None:intergenic | 40.0% | |
GAGTTATCTGAACTCTGTCT+CGG | - | chr2_1:62140778-62140797 | Msa0216360:CDS | 40.0% | |
GTTGAAATAGACTTCAACGG+GGG | + | chr2_1:62140808-62140827 | None:intergenic | 40.0% | |
CGTTGAAATAGACTTCAACG+GGG | + | chr2_1:62140809-62140828 | None:intergenic | 40.0% | |
AACACTGACGAAAGTTTCGT+CGG | + | chr2_1:62140872-62140891 | None:intergenic | 40.0% | |
ACGAAACTTTCGTCAGTGTT+TGG | - | chr2_1:62140872-62140891 | Msa0216360:CDS | 40.0% | |
ATGTGTTGGGAAAGTTTGCA+TGG | - | chr2_1:62140927-62140946 | Msa0216360:CDS | 40.0% | |
!! | GGTTTCTGTAGTTTTGCCTA+AGG | - | chr2_1:62141017-62141036 | Msa0216360:CDS | 40.0% |
!! | GTAGTTTTGCCTAAGGTTGA+TGG | - | chr2_1:62141024-62141043 | Msa0216360:CDS | 40.0% |
ACAACAAGACCATCAACCTT+AGG | + | chr2_1:62141036-62141055 | None:intergenic | 40.0% | |
AGCCATTGATCTTATACTCC+AGG | - | chr2_1:62141211-62141230 | Msa0216360:CDS | 40.0% | |
GCCATTGATCTTATACTCCA+GGG | - | chr2_1:62141212-62141231 | Msa0216360:CDS | 40.0% | |
TCCCTGGAGTATAAGATCAA+TGG | + | chr2_1:62141216-62141235 | None:intergenic | 40.0% | |
!! | CAAAAAGAGGAGGCATTTCA+AGG | - | chr2_1:62141267-62141286 | Msa0216360:CDS | 40.0% |
TCAACAACCAACAACCACAA+CGG | - | chr2_1:62141311-62141330 | Msa0216360:CDS | 40.0% | |
TAACACAAGAGGATGTGATC+AGG | - | chr2_1:62141351-62141370 | Msa0216360:CDS | 40.0% | |
GAGAATCAATGGAGTATGCT+GGG | + | chr2_1:62141412-62141431 | None:intergenic | 40.0% | |
AGAGAATCAATGGAGTATGC+TGG | + | chr2_1:62141413-62141432 | None:intergenic | 40.0% | |
TTGCAATTGTCGACAGTGAT+GGG | - | chr2_1:62141531-62141550 | Msa0216360:CDS | 40.0% | |
TCACAACAAGCAAGTGTGAA+GGG | + | chr2_1:62141578-62141597 | None:intergenic | 40.0% | |
ATCACAACAAGCAAGTGTGA+AGG | + | chr2_1:62141579-62141598 | None:intergenic | 40.0% | |
!! | ACTTGCTTGTTGTGATGAGA+CGG | - | chr2_1:62141583-62141602 | Msa0216360:intron | 40.0% |
GGATCTTGTGAGACTTGTAA+AGG | - | chr2_1:62141676-62141695 | Msa0216360:intron | 40.0% | |
TTGTGAGACTTGTAAAGGCA+AGG | - | chr2_1:62141681-62141700 | Msa0216360:intron | 40.0% | |
ACTTGTAAAGGCAAGGTTGA+AGG | - | chr2_1:62141688-62141707 | Msa0216360:CDS | 40.0% | |
ACAGCAATCAAAGAGCTCTT+GGG | + | chr2_1:62141887-62141906 | None:intergenic | 40.0% | |
CTCATAGAGTGAACTACTTG+TGG | - | chr2_1:62141924-62141943 | Msa0216360:CDS | 40.0% | |
! | GAACTACTTGTGGGTTATTG+AGG | - | chr2_1:62141934-62141953 | Msa0216360:CDS | 40.0% |
!! | AGGCGTTGAGAAAGTTGAAA+CGG | + | chr2_1:62140717-62140736 | None:intergenic | 40.0% |
TGCCATACAAAGAATGAACG+CGG | + | chr2_1:62140740-62140759 | None:intergenic | 40.0% | |
GAGTTATCTGAACTCTGTCT+CGG | - | chr2_1:62140778-62140797 | Msa0216360:CDS | 40.0% | |
GTTGAAATAGACTTCAACGG+GGG | + | chr2_1:62140808-62140827 | None:intergenic | 40.0% | |
CGTTGAAATAGACTTCAACG+GGG | + | chr2_1:62140809-62140828 | None:intergenic | 40.0% | |
AACACTGACGAAAGTTTCGT+CGG | + | chr2_1:62140872-62140891 | None:intergenic | 40.0% | |
ACGAAACTTTCGTCAGTGTT+TGG | - | chr2_1:62140872-62140891 | Msa0216360:CDS | 40.0% | |
ATGTGTTGGGAAAGTTTGCA+TGG | - | chr2_1:62140927-62140946 | Msa0216360:CDS | 40.0% | |
!! | GGTTTCTGTAGTTTTGCCTA+AGG | - | chr2_1:62141017-62141036 | Msa0216360:CDS | 40.0% |
!! | GTAGTTTTGCCTAAGGTTGA+TGG | - | chr2_1:62141024-62141043 | Msa0216360:CDS | 40.0% |
ACAACAAGACCATCAACCTT+AGG | + | chr2_1:62141036-62141055 | None:intergenic | 40.0% | |
AGCCATTGATCTTATACTCC+AGG | - | chr2_1:62141211-62141230 | Msa0216360:CDS | 40.0% | |
GCCATTGATCTTATACTCCA+GGG | - | chr2_1:62141212-62141231 | Msa0216360:CDS | 40.0% | |
TCCCTGGAGTATAAGATCAA+TGG | + | chr2_1:62141216-62141235 | None:intergenic | 40.0% | |
!! | CAAAAAGAGGAGGCATTTCA+AGG | - | chr2_1:62141267-62141286 | Msa0216360:CDS | 40.0% |
TCAACAACCAACAACCACAA+CGG | - | chr2_1:62141311-62141330 | Msa0216360:CDS | 40.0% | |
TAACACAAGAGGATGTGATC+AGG | - | chr2_1:62141351-62141370 | Msa0216360:CDS | 40.0% | |
GAGAATCAATGGAGTATGCT+GGG | + | chr2_1:62141412-62141431 | None:intergenic | 40.0% | |
AGAGAATCAATGGAGTATGC+TGG | + | chr2_1:62141413-62141432 | None:intergenic | 40.0% | |
TTGCAATTGTCGACAGTGAT+GGG | - | chr2_1:62141531-62141550 | Msa0216360:CDS | 40.0% | |
TCACAACAAGCAAGTGTGAA+GGG | + | chr2_1:62141578-62141597 | None:intergenic | 40.0% | |
ATCACAACAAGCAAGTGTGA+AGG | + | chr2_1:62141579-62141598 | None:intergenic | 40.0% | |
!! | ACTTGCTTGTTGTGATGAGA+CGG | - | chr2_1:62141583-62141602 | Msa0216360:intron | 40.0% |
GGATCTTGTGAGACTTGTAA+AGG | - | chr2_1:62141676-62141695 | Msa0216360:intron | 40.0% | |
TTGTGAGACTTGTAAAGGCA+AGG | - | chr2_1:62141681-62141700 | Msa0216360:intron | 40.0% | |
ACTTGTAAAGGCAAGGTTGA+AGG | - | chr2_1:62141688-62141707 | Msa0216360:CDS | 40.0% | |
ACAGCAATCAAAGAGCTCTT+GGG | + | chr2_1:62141887-62141906 | None:intergenic | 40.0% | |
CTCATAGAGTGAACTACTTG+TGG | - | chr2_1:62141924-62141943 | Msa0216360:CDS | 40.0% | |
! | GAACTACTTGTGGGTTATTG+AGG | - | chr2_1:62141934-62141953 | Msa0216360:CDS | 40.0% |
CATACAAAGAATGAACGCGG+AGG | + | chr2_1:62140737-62140756 | None:intergenic | 45.0% | |
CTCCGCGTTCATTCTTTGTA+TGG | - | chr2_1:62140735-62140754 | Msa0216360:CDS | 45.0% | |
TCTGAGGACTTCAATTGCCT+CGG | + | chr2_1:62140845-62140864 | None:intergenic | 45.0% | |
AGCTGTGACCATTCTGAATG+CGG | - | chr2_1:62140895-62140914 | Msa0216360:CDS | 45.0% | |
AACAGAATTCAGCACCGTTG+TGG | + | chr2_1:62141328-62141347 | None:intergenic | 45.0% | |
! | ACAACGGTGCTGAATTCTGT+TGG | - | chr2_1:62141327-62141346 | Msa0216360:CDS | 45.0% |
GATGTGATCAGGTTCTTGCT+TGG | - | chr2_1:62141362-62141381 | Msa0216360:CDS | 45.0% | |
AGGTTCTTGCTTGGTTCCAT+TGG | - | chr2_1:62141371-62141390 | Msa0216360:CDS | 45.0% | |
!! | CGACTTTGAGATTGCCTCAA+CGG | + | chr2_1:62141492-62141511 | None:intergenic | 45.0% |
GTTGCAATTGTCGACAGTGA+TGG | - | chr2_1:62141530-62141549 | Msa0216360:CDS | 45.0% | |
! | TTGATGGCCTACATTGACTG+TGG | - | chr2_1:62141641-62141660 | Msa0216360:intron | 45.0% |
ACAAGTCTCACAAGATCCTC+TGG | + | chr2_1:62141674-62141693 | None:intergenic | 45.0% | |
! | TTTGACTTCCTTGACCAGTG+AGG | - | chr2_1:62141748-62141767 | Msa0216360:CDS | 45.0% |
GCTATTCGGCAAGATTTGTG+AGG | - | chr2_1:62141837-62141856 | Msa0216360:CDS | 45.0% | |
CACAGCAATCAAAGAGCTCT+TGG | + | chr2_1:62141888-62141907 | None:intergenic | 45.0% | |
GAGGATGATTGCAGCTTAGT+TGG | - | chr2_1:62141953-62141972 | Msa0216360:CDS | 45.0% | |
CATACAAAGAATGAACGCGG+AGG | + | chr2_1:62140737-62140756 | None:intergenic | 45.0% | |
CTCCGCGTTCATTCTTTGTA+TGG | - | chr2_1:62140735-62140754 | Msa0216360:CDS | 45.0% | |
TCTGAGGACTTCAATTGCCT+CGG | + | chr2_1:62140845-62140864 | None:intergenic | 45.0% | |
AGCTGTGACCATTCTGAATG+CGG | - | chr2_1:62140895-62140914 | Msa0216360:CDS | 45.0% | |
AACAGAATTCAGCACCGTTG+TGG | + | chr2_1:62141328-62141347 | None:intergenic | 45.0% | |
! | ACAACGGTGCTGAATTCTGT+TGG | - | chr2_1:62141327-62141346 | Msa0216360:CDS | 45.0% |
GATGTGATCAGGTTCTTGCT+TGG | - | chr2_1:62141362-62141381 | Msa0216360:CDS | 45.0% | |
AGGTTCTTGCTTGGTTCCAT+TGG | - | chr2_1:62141371-62141390 | Msa0216360:CDS | 45.0% | |
!! | CGACTTTGAGATTGCCTCAA+CGG | + | chr2_1:62141492-62141511 | None:intergenic | 45.0% |
GTTGCAATTGTCGACAGTGA+TGG | - | chr2_1:62141530-62141549 | Msa0216360:CDS | 45.0% | |
! | TTGATGGCCTACATTGACTG+TGG | - | chr2_1:62141641-62141660 | Msa0216360:intron | 45.0% |
ACAAGTCTCACAAGATCCTC+TGG | + | chr2_1:62141674-62141693 | None:intergenic | 45.0% | |
! | TTTGACTTCCTTGACCAGTG+AGG | - | chr2_1:62141748-62141767 | Msa0216360:CDS | 45.0% |
GCTATTCGGCAAGATTTGTG+AGG | - | chr2_1:62141837-62141856 | Msa0216360:CDS | 45.0% | |
CACAGCAATCAAAGAGCTCT+TGG | + | chr2_1:62141888-62141907 | None:intergenic | 45.0% | |
GAGGATGATTGCAGCTTAGT+TGG | - | chr2_1:62141953-62141972 | Msa0216360:CDS | 45.0% | |
GACTTCAATTGCCTCGGCAA+CGG | + | chr2_1:62140839-62140858 | None:intergenic | 50.0% | |
AAGTTTCGTCGGAGCTTCTG+AGG | + | chr2_1:62140861-62140880 | None:intergenic | 50.0% | |
GACAACGACCGCATTCAGAA+TGG | + | chr2_1:62140906-62140925 | None:intergenic | 50.0% | |
TGCGGTCGTTGTCAATGTGT+TGG | - | chr2_1:62140913-62140932 | Msa0216360:CDS | 50.0% | |
GCGGTCGTTGTCAATGTGTT+GGG | - | chr2_1:62140914-62140933 | Msa0216360:CDS | 50.0% | |
TTCAGCACCGTTGTGGTTGT+TGG | + | chr2_1:62141321-62141340 | None:intergenic | 50.0% | |
TCAATGGAGTATGCTGGGAG+TGG | + | chr2_1:62141407-62141426 | None:intergenic | 50.0% | |
AGACGCGGGGGAATAGTAAT+CGG | + | chr2_1:62141465-62141484 | None:intergenic | 50.0% | |
! | GACAGTGATGGGACATTCGT+CGG | - | chr2_1:62141542-62141561 | Msa0216360:intron | 50.0% |
TGCGGACAAAGTTGTGATCG+CGG | + | chr2_1:62141615-62141634 | None:intergenic | 50.0% | |
CGATCACAACTTTGTCCGCA+GGG | - | chr2_1:62141615-62141634 | Msa0216360:intron | 50.0% | |
GATCACAACTTTGTCCGCAG+GGG | - | chr2_1:62141616-62141635 | Msa0216360:intron | 50.0% | |
TCTCACAAGATCCTCTGGTG+GGG | + | chr2_1:62141669-62141688 | None:intergenic | 50.0% | |
GTCTCACAAGATCCTCTGGT+GGG | + | chr2_1:62141670-62141689 | None:intergenic | 50.0% | |
AGTCTCACAAGATCCTCTGG+TGG | + | chr2_1:62141671-62141690 | None:intergenic | 50.0% | |
TTCCTTGACCAGTGAGGTGT+TGG | - | chr2_1:62141754-62141773 | Msa0216360:CDS | 50.0% | |
CGCAAGGTCATCGAGCTATT+CGG | - | chr2_1:62141823-62141842 | Msa0216360:CDS | 50.0% | |
GACTTCAATTGCCTCGGCAA+CGG | + | chr2_1:62140839-62140858 | None:intergenic | 50.0% | |
AAGTTTCGTCGGAGCTTCTG+AGG | + | chr2_1:62140861-62140880 | None:intergenic | 50.0% | |
GACAACGACCGCATTCAGAA+TGG | + | chr2_1:62140906-62140925 | None:intergenic | 50.0% | |
TGCGGTCGTTGTCAATGTGT+TGG | - | chr2_1:62140913-62140932 | Msa0216360:CDS | 50.0% | |
GCGGTCGTTGTCAATGTGTT+GGG | - | chr2_1:62140914-62140933 | Msa0216360:CDS | 50.0% | |
TTCAGCACCGTTGTGGTTGT+TGG | + | chr2_1:62141321-62141340 | None:intergenic | 50.0% | |
TCAATGGAGTATGCTGGGAG+TGG | + | chr2_1:62141407-62141426 | None:intergenic | 50.0% | |
AGACGCGGGGGAATAGTAAT+CGG | + | chr2_1:62141465-62141484 | None:intergenic | 50.0% | |
! | GACAGTGATGGGACATTCGT+CGG | - | chr2_1:62141542-62141561 | Msa0216360:intron | 50.0% |
TGCGGACAAAGTTGTGATCG+CGG | + | chr2_1:62141615-62141634 | None:intergenic | 50.0% | |
CGATCACAACTTTGTCCGCA+GGG | - | chr2_1:62141615-62141634 | Msa0216360:intron | 50.0% | |
GATCACAACTTTGTCCGCAG+GGG | - | chr2_1:62141616-62141635 | Msa0216360:intron | 50.0% | |
TCTCACAAGATCCTCTGGTG+GGG | + | chr2_1:62141669-62141688 | None:intergenic | 50.0% | |
GTCTCACAAGATCCTCTGGT+GGG | + | chr2_1:62141670-62141689 | None:intergenic | 50.0% | |
AGTCTCACAAGATCCTCTGG+TGG | + | chr2_1:62141671-62141690 | None:intergenic | 50.0% | |
TTCCTTGACCAGTGAGGTGT+TGG | - | chr2_1:62141754-62141773 | Msa0216360:CDS | 50.0% | |
CGCAAGGTCATCGAGCTATT+CGG | - | chr2_1:62141823-62141842 | Msa0216360:CDS | 50.0% | |
CCACAAGATTCTGTGCTCCC+TGG | + | chr2_1:62141232-62141251 | None:intergenic | 55.0% | |
! | CCAGGGAGCACAGAATCTTG+TGG | - | chr2_1:62141229-62141248 | Msa0216360:CDS | 55.0% |
!! | GAGTGGACTGAAGTGGCCAA+TGG | + | chr2_1:62141390-62141409 | None:intergenic | 55.0% |
!! | ATGCTGGGAGTGGACTGAAG+TGG | + | chr2_1:62141397-62141416 | None:intergenic | 55.0% |
TAATCGGTGGCGAGCACATC+GGG | + | chr2_1:62141449-62141468 | None:intergenic | 55.0% | |
GTAATCGGTGGCGAGCACAT+CGG | + | chr2_1:62141450-62141469 | None:intergenic | 55.0% | |
GCGATCACAACTTTGTCCGC+AGG | - | chr2_1:62141614-62141633 | Msa0216360:intron | 55.0% | |
TTTGTCCGCAGGGGACTTGA+TGG | - | chr2_1:62141625-62141644 | Msa0216360:intron | 55.0% | |
! | TGGGGCACCACAGTCAATGT+AGG | + | chr2_1:62141651-62141670 | None:intergenic | 55.0% |
GCGTGCTTTCCTAACCTCGT+CGG | + | chr2_1:62141806-62141825 | None:intergenic | 55.0% | |
! | CGAGGTTAGGAAAGCACGCA+AGG | - | chr2_1:62141807-62141826 | Msa0216360:CDS | 55.0% |
CCACAAGATTCTGTGCTCCC+TGG | + | chr2_1:62141232-62141251 | None:intergenic | 55.0% | |
! | CCAGGGAGCACAGAATCTTG+TGG | - | chr2_1:62141229-62141248 | Msa0216360:CDS | 55.0% |
!! | GAGTGGACTGAAGTGGCCAA+TGG | + | chr2_1:62141390-62141409 | None:intergenic | 55.0% |
!! | ATGCTGGGAGTGGACTGAAG+TGG | + | chr2_1:62141397-62141416 | None:intergenic | 55.0% |
TAATCGGTGGCGAGCACATC+GGG | + | chr2_1:62141449-62141468 | None:intergenic | 55.0% | |
GTAATCGGTGGCGAGCACAT+CGG | + | chr2_1:62141450-62141469 | None:intergenic | 55.0% | |
GCGATCACAACTTTGTCCGC+AGG | - | chr2_1:62141614-62141633 | Msa0216360:intron | 55.0% | |
TTTGTCCGCAGGGGACTTGA+TGG | - | chr2_1:62141625-62141644 | Msa0216360:intron | 55.0% | |
! | TGGGGCACCACAGTCAATGT+AGG | + | chr2_1:62141651-62141670 | None:intergenic | 55.0% |
GCGTGCTTTCCTAACCTCGT+CGG | + | chr2_1:62141806-62141825 | None:intergenic | 55.0% | |
! | CGAGGTTAGGAAAGCACGCA+AGG | - | chr2_1:62141807-62141826 | Msa0216360:CDS | 55.0% |
! | AACGTTGGCTACCGTTGCCG+AGG | - | chr2_1:62140825-62140844 | Msa0216360:CDS | 60.0% |
AATCGGTGGCGAGCACATCG+GGG | + | chr2_1:62141448-62141467 | None:intergenic | 60.0% | |
CGCGGGGGAATAGTAATCGG+TGG | + | chr2_1:62141462-62141481 | None:intergenic | 60.0% | |
TGCCTCAACGGACGAAGACG+CGG | + | chr2_1:62141480-62141499 | None:intergenic | 60.0% | |
GTAGGCCATCAAGTCCCCTG+CGG | + | chr2_1:62141633-62141652 | None:intergenic | 60.0% | |
GGCCAACACCTCACTGGTCA+AGG | + | chr2_1:62141759-62141778 | None:intergenic | 60.0% | |
AGACGAGGCCAACACCTCAC+TGG | + | chr2_1:62141765-62141784 | None:intergenic | 60.0% | |
CTCCTCGTCAGAGGAAGACG+AGG | + | chr2_1:62141780-62141799 | None:intergenic | 60.0% | |
GAGGAGAGTCCGACGAGGTT+AGG | - | chr2_1:62141794-62141813 | Msa0216360:CDS | 60.0% | |
! | AACGTTGGCTACCGTTGCCG+AGG | - | chr2_1:62140825-62140844 | Msa0216360:CDS | 60.0% |
AATCGGTGGCGAGCACATCG+GGG | + | chr2_1:62141448-62141467 | None:intergenic | 60.0% | |
CGCGGGGGAATAGTAATCGG+TGG | + | chr2_1:62141462-62141481 | None:intergenic | 60.0% | |
TGCCTCAACGGACGAAGACG+CGG | + | chr2_1:62141480-62141499 | None:intergenic | 60.0% | |
GTAGGCCATCAAGTCCCCTG+CGG | + | chr2_1:62141633-62141652 | None:intergenic | 60.0% | |
GGCCAACACCTCACTGGTCA+AGG | + | chr2_1:62141759-62141778 | None:intergenic | 60.0% | |
AGACGAGGCCAACACCTCAC+TGG | + | chr2_1:62141765-62141784 | None:intergenic | 60.0% | |
CTCCTCGTCAGAGGAAGACG+AGG | + | chr2_1:62141780-62141799 | None:intergenic | 60.0% | |
GAGGAGAGTCCGACGAGGTT+AGG | - | chr2_1:62141794-62141813 | Msa0216360:CDS | 60.0% | |
CTCAACGGACGAAGACGCGG+GGG | + | chr2_1:62141477-62141496 | None:intergenic | 65.0% | |
CCTCAACGGACGAAGACGCG+GGG | + | chr2_1:62141478-62141497 | None:intergenic | 65.0% | |
GCCTCAACGGACGAAGACGC+GGG | + | chr2_1:62141479-62141498 | None:intergenic | 65.0% | |
TGACTGTGGTGCCCCACCAG+AGG | - | chr2_1:62141655-62141674 | Msa0216360:intron | 65.0% | |
GGCCTCGTCTTCCTCTGACG+AGG | - | chr2_1:62141775-62141794 | Msa0216360:CDS | 65.0% | |
CGTCGGACTCTCCTCGTCAG+AGG | + | chr2_1:62141789-62141808 | None:intergenic | 65.0% | |
CTGACGAGGAGAGTCCGACG+AGG | - | chr2_1:62141789-62141808 | Msa0216360:CDS | 65.0% | |
CTCAACGGACGAAGACGCGG+GGG | + | chr2_1:62141477-62141496 | None:intergenic | 65.0% | |
CCTCAACGGACGAAGACGCG+GGG | + | chr2_1:62141478-62141497 | None:intergenic | 65.0% | |
GCCTCAACGGACGAAGACGC+GGG | + | chr2_1:62141479-62141498 | None:intergenic | 65.0% | |
TGACTGTGGTGCCCCACCAG+AGG | - | chr2_1:62141655-62141674 | Msa0216360:intron | 65.0% | |
GGCCTCGTCTTCCTCTGACG+AGG | - | chr2_1:62141775-62141794 | Msa0216360:CDS | 65.0% | |
CGTCGGACTCTCCTCGTCAG+AGG | + | chr2_1:62141789-62141808 | None:intergenic | 65.0% | |
CTGACGAGGAGAGTCCGACG+AGG | - | chr2_1:62141789-62141808 | Msa0216360:CDS | 65.0% | |
CCCCGCGTCTTCGTCCGTTG+AGG | - | chr2_1:62141475-62141494 | Msa0216360:CDS | 70.0% | |
CCCCGCGTCTTCGTCCGTTG+AGG | - | chr2_1:62141475-62141494 | Msa0216360:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 62140682 | 62142080 | 62140682 | ID=Msa0216360;Name=Msa0216360 |
chr2_1 | mRNA | 62140682 | 62142080 | 62140682 | ID=Msa0216360-mRNA-1;Parent=Msa0216360;Name=Msa0216360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=72|1|1|1|1|1|2|47|384 |
chr2_1 | exon | 62140682 | 62141560 | 62140682 | ID=Msa0216360-mRNA-1:exon:17238;Parent=Msa0216360-mRNA-1 |
chr2_1 | exon | 62141686 | 62142080 | 62141686 | ID=Msa0216360-mRNA-1:exon:17237;Parent=Msa0216360-mRNA-1 |
chr2_1 | five_prime_UTR | 62142009 | 62142080 | 62142009 | ID=Msa0216360-mRNA-1:five_prime_utr;Parent=Msa0216360-mRNA-1 |
chr2_1 | CDS | 62141686 | 62142008 | 62141686 | ID=Msa0216360-mRNA-1:cds;Parent=Msa0216360-mRNA-1 |
chr2_1 | CDS | 62140729 | 62141560 | 62140729 | ID=Msa0216360-mRNA-1:cds;Parent=Msa0216360-mRNA-1 |
chr2_1 | three_prime_UTR | 62140682 | 62140728 | 62140682 | ID=Msa0216360-mRNA-1:three_prime_utr;Parent=Msa0216360-mRNA-1 |
Gene Sequence |
Protein sequence |