AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0216360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0216360 MtrunA17_Chr2g0317881 91.688 385 31 1 1 384 1 385 0.0 675
Msa0216360 MtrunA17_Chr2g0317871 80.720 389 70 2 1 384 1 389 0.0 608
Msa0216360 MtrunA17_Chr2g0281871 47.901 405 180 7 1 384 1 395 4.91e-119 350
Msa0216360 MtrunA17_Chr7g0249131 28.029 421 231 12 1 374 1 396 3.62e-33 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0216360 AT5G53750.1 50.852 411 169 10 1 383 1 406 1.77e-121 357
Msa0216360 AT4G27460.1 51.523 394 175 8 1 383 1 389 8.36e-121 355
Msa0216360 AT1G65320.1 27.570 428 239 13 1 380 1 405 4.75e-30 120

Find 97 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCTTGAATCTTCTTCT+AGG 0.276693 2_1:-62141685 Msa0216360:intron
ACGAAACTTTCGTCAGTGTT+TGG 0.318070 2_1:-62141868 Msa0216360:CDS
TAATCGGTGGCGAGCACATC+GGG 0.334173 2_1:+62141294 None:intergenic
TTCTAAAGCTCTTAAAGCTT+TGG 0.338761 2_1:-62141744 Msa0216360:CDS
AAGGTTGAAGGAGAAGAATT+TGG 0.348572 2_1:-62141040 Msa0216360:CDS
GAGGAGAGTCCGACGAGGTT+AGG 0.358176 2_1:-62140946 Msa0216360:CDS
CACAGCAATCAAAGAGCTCT+TGG 0.367612 2_1:+62140855 None:intergenic
TTTGTCCGCAGGGGACTTGA+TGG 0.380969 2_1:-62141115 Msa0216360:CDS
CTCCGCGTTCATTCTTTGTA+TGG 0.381602 2_1:-62142005 Msa0216360:exon
ACGTTGAAATAGACTTCAAC+GGG 0.384466 2_1:+62141933 None:intergenic
AAAGCTTTAAGAGCTTTAGA+AGG 0.390851 2_1:+62141746 None:intergenic
AGATAACTCATGTGTCAAAA+AGG 0.390942 2_1:+62141976 None:intergenic
GAGGATGATTGCAGCTTAGT+TGG 0.425795 2_1:-62140787 Msa0216360:CDS
CGCAAGGTCATCGAGCTATT+CGG 0.427267 2_1:-62140917 Msa0216360:CDS
AGGTTCTTGCTTGGTTCCAT+TGG 0.434543 2_1:-62141369 Msa0216360:CDS
TTCAGCACCGTTGTGGTTGT+TGG 0.457385 2_1:+62141422 None:intergenic
CTCATAGAGTGAACTACTTG+TGG 0.459777 2_1:-62140816 Msa0216360:CDS
TCATAGAGTGAACTACTTGT+GGG 0.462004 2_1:-62140815 Msa0216360:CDS
AGCCATTGATCTTATACTCC+AGG 0.463049 2_1:-62141529 Msa0216360:CDS
TTCCTTGACCAGTGAGGTGT+TGG 0.464148 2_1:-62140986 Msa0216360:CDS
CCACAAGATTCTGTGCTCCC+TGG 0.482496 2_1:+62141511 None:intergenic
GATGATATCGAGAGAATCAA+TGG 0.482501 2_1:+62141320 None:intergenic
GATGTGATCAGGTTCTTGCT+TGG 0.488754 2_1:-62141378 Msa0216360:CDS
AGAGAATCAATGGAGTATGC+TGG 0.500746 2_1:+62141330 None:intergenic
GAACTACTTGTGGGTTATTG+AGG 0.502090 2_1:-62140806 Msa0216360:CDS
ACAAGTCTCACAAGATCCTC+TGG 0.503032 2_1:+62141069 None:intergenic
GTCTCACAAGATCCTCTGGT+GGG 0.511904 2_1:+62141073 None:intergenic
AAGTTTCGTCGGAGCTTCTG+AGG 0.513062 2_1:+62141882 None:intergenic
TCCCTGGAGTATAAGATCAA+TGG 0.516231 2_1:+62141527 None:intergenic
ACTTGTAAAGGCAAGGTTGA+AGG 0.518293 2_1:-62141052 Msa0216360:CDS
GCGATCACAACTTTGTCCGC+AGG 0.523015 2_1:-62141126 Msa0216360:CDS
ACAGCAATCAAAGAGCTCTT+GGG 0.525945 2_1:+62140856 None:intergenic
GACTTCAATTGCCTCGGCAA+CGG 0.536075 2_1:+62141904 None:intergenic
GCCTCAACGGACGAAGACGC+GGG 0.537089 2_1:+62141264 None:intergenic
TCTGAGGACTTCAATTGCCT+CGG 0.537513 2_1:+62141898 None:intergenic
TGCGGTCGTTGTCAATGTGT+TGG 0.538310 2_1:-62141827 Msa0216360:CDS
TGCCTCAACGGACGAAGACG+CGG 0.542912 2_1:+62141263 None:intergenic
GGCCAACACCTCACTGGTCA+AGG 0.543007 2_1:+62140984 None:intergenic
CGACTTTGAGATTGCCTCAA+CGG 0.550282 2_1:+62141251 None:intergenic
TAACACAAGAGGATGTGATC+AGG 0.550433 2_1:-62141389 Msa0216360:CDS
GCGGTCGTTGTCAATGTGTT+GGG 0.553823 2_1:-62141826 Msa0216360:CDS
GAGAATCAATGGAGTATGCT+GGG 0.555251 2_1:+62141331 None:intergenic
AACGTTGGCTACCGTTGCCG+AGG 0.562278 2_1:-62141915 Msa0216360:CDS
ACAACAAGACCATCAACCTT+AGG 0.563973 2_1:+62141707 None:intergenic
TTGTGAGACTTGTAAAGGCA+AGG 0.564406 2_1:-62141059 Msa0216360:CDS
TCAATGGAGTATGCTGGGAG+TGG 0.567874 2_1:+62141336 None:intergenic
ACAACGGTGCTGAATTCTGT+TGG 0.574350 2_1:-62141413 Msa0216360:CDS
GCGTGCTTTCCTAACCTCGT+CGG 0.580425 2_1:+62140937 None:intergenic
AGGCGTTGAGAAAGTTGAAA+CGG 0.581259 2_1:+62142026 None:intergenic
AGACGAGGCCAACACCTCAC+TGG 0.581425 2_1:+62140978 None:intergenic
GGATCTTGTGAGACTTGTAA+AGG 0.582402 2_1:-62141064 Msa0216360:CDS
GTTGAAGTCTATTTCAACGT+TGG 0.583473 2_1:-62141930 Msa0216360:CDS
GCCATTGATCTTATACTCCA+GGG 0.586242 2_1:-62141528 Msa0216360:CDS
ATCACAACAAGCAAGTGTGA+AGG 0.587369 2_1:+62141164 None:intergenic
GACAACGACCGCATTCAGAA+TGG 0.588165 2_1:+62141837 None:intergenic
GAGTTATCTGAACTCTGTCT+CGG 0.589665 2_1:-62141962 Msa0216360:CDS
TCACAACAAGCAAGTGTGAA+GGG 0.590736 2_1:+62141165 None:intergenic
GTTGCAATTGTCGACAGTGA+TGG 0.591666 2_1:-62141210 Msa0216360:CDS
CGAGGTTAGGAAAGCACGCA+AGG 0.592136 2_1:-62140933 Msa0216360:CDS
AACAGAATTCAGCACCGTTG+TGG 0.599089 2_1:+62141415 None:intergenic
CCTCAACGGACGAAGACGCG+GGG 0.601143 2_1:+62141265 None:intergenic
ATTCTGTTGGTTAACACAAG+AGG 0.602333 2_1:-62141400 Msa0216360:CDS
CGATCACAACTTTGTCCGCA+GGG 0.602716 2_1:-62141125 Msa0216360:CDS
CCCCGCGTCTTCGTCCGTTG+AGG 0.604374 2_1:-62141265 Msa0216360:CDS
TTGCAATTGTCGACAGTGAT+GGG 0.605549 2_1:-62141209 Msa0216360:CDS
AACACTGACGAAAGTTTCGT+CGG 0.613598 2_1:+62141871 None:intergenic
CGTCGGACTCTCCTCGTCAG+AGG 0.614308 2_1:+62140954 None:intergenic
TGGGGCACCACAGTCAATGT+AGG 0.615981 2_1:+62141092 None:intergenic
GACAGTGATGGGACATTCGT+CGG 0.616167 2_1:-62141198 Msa0216360:CDS
AACGTTGAAATAGACTTCAA+CGG 0.620008 2_1:+62141932 None:intergenic
GAGTGGACTGAAGTGGCCAA+TGG 0.621613 2_1:+62141353 None:intergenic
ACTTGCTTGTTGTGATGAGA+CGG 0.623722 2_1:-62141157 Msa0216360:CDS
ATGTGTTGGGAAAGTTTGCA+TGG 0.628591 2_1:-62141813 Msa0216360:CDS
CTCCTCGTCAGAGGAAGACG+AGG 0.630235 2_1:+62140963 None:intergenic
TGACTGTGGTGCCCCACCAG+AGG 0.632561 2_1:-62141085 Msa0216360:CDS
TCTCACAAGATCCTCTGGTG+GGG 0.633891 2_1:+62141074 None:intergenic
TGCGGACAAAGTTGTGATCG+CGG 0.639568 2_1:+62141128 None:intergenic
GTAATCGGTGGCGAGCACAT+CGG 0.640941 2_1:+62141293 None:intergenic
TTGATGGCCTACATTGACTG+TGG 0.644512 2_1:-62141099 Msa0216360:CDS
AGTCTCACAAGATCCTCTGG+TGG 0.651361 2_1:+62141072 None:intergenic
CCAGGGAGCACAGAATCTTG+TGG 0.656446 2_1:-62141511 Msa0216360:CDS
AGCTGTGACCATTCTGAATG+CGG 0.668057 2_1:-62141845 Msa0216360:CDS
GCTATTCGGCAAGATTTGTG+AGG 0.668957 2_1:-62140903 Msa0216360:CDS
GGCCTCGTCTTCCTCTGACG+AGG 0.669844 2_1:-62140965 Msa0216360:CDS
AAGATTTGTGAGGAATGTAG+AGG 0.675720 2_1:-62140893 Msa0216360:CDS
TTTGACTTCCTTGACCAGTG+AGG 0.690884 2_1:-62140992 Msa0216360:CDS
GTTGAAATAGACTTCAACGG+GGG 0.695337 2_1:+62141935 None:intergenic
TCAACAACCAACAACCACAA+CGG 0.695557 2_1:-62141429 Msa0216360:CDS
CTCAACGGACGAAGACGCGG+GGG 0.703875 2_1:+62141266 None:intergenic
TGCCATACAAAGAATGAACG+CGG 0.716347 2_1:+62142003 None:intergenic
AATCGGTGGCGAGCACATCG+GGG 0.730338 2_1:+62141295 None:intergenic
ATGCTGGGAGTGGACTGAAG+TGG 0.731672 2_1:+62141346 None:intergenic
CATACAAAGAATGAACGCGG+AGG 0.740021 2_1:+62142006 None:intergenic
CTGACGAGGAGAGTCCGACG+AGG 0.744361 2_1:-62140951 Msa0216360:CDS
GATCACAACTTTGTCCGCAG+GGG 0.750662 2_1:-62141124 Msa0216360:CDS
GTAGGCCATCAAGTCCCCTG+CGG 0.766683 2_1:+62141110 None:intergenic
CGTTGAAATAGACTTCAACG+GGG 0.770457 2_1:+62141934 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATCAAAATAACAATAATGA+GGG + chr2_1:62141176-62141195 None:intergenic 20.0%
!! ACATCAAAATAACAATAATG+AGG + chr2_1:62141177-62141196 None:intergenic 20.0%
!!! TACTTTTTCTAATATCTTGA+AGG - chr2_1:62141982-62142001 Msa0216360:CDS 20.0%
!! CATCAAAATAACAATAATGA+GGG + chr2_1:62141176-62141195 None:intergenic 20.0%
!! ACATCAAAATAACAATAATG+AGG + chr2_1:62141177-62141196 None:intergenic 20.0%
!!! TACTTTTTCTAATATCTTGA+AGG - chr2_1:62141982-62142001 Msa0216360:CDS 20.0%
!!! ATGTAACAATGTTTTTGCTT+TGG - chr2_1:62142047-62142066 Msa0216360:five_prime_UTR 25.0%
!!! ATGTAACAATGTTTTTGCTT+TGG - chr2_1:62142047-62142066 Msa0216360:five_prime_UTR 25.0%
AGATAACTCATGTGTCAAAA+AGG + chr2_1:62140767-62140786 None:intergenic 30.0%
AACGTTGAAATAGACTTCAA+CGG + chr2_1:62140811-62140830 None:intergenic 30.0%
!!! AAAGATTTTCTGGTTTGCAA+AGG + chr2_1:62140969-62140988 None:intergenic 30.0%
! GAAGGATACAAAAGATTTTC+TGG + chr2_1:62140979-62140998 None:intergenic 30.0%
!! AAAGCTTTAAGAGCTTTAGA+AGG + chr2_1:62140997-62141016 None:intergenic 30.0%
!! TTCTAAAGCTCTTAAAGCTT+TGG - chr2_1:62140996-62141015 Msa0216360:CDS 30.0%
TTCATCTTGAATCTTCTTCT+AGG - chr2_1:62141055-62141074 Msa0216360:CDS 30.0%
!! CCTCTTTTTGTTTGCAAAAT+TGG + chr2_1:62141257-62141276 None:intergenic 30.0%
! CCAATTTTGCAAACAAAAAG+AGG - chr2_1:62141254-62141273 Msa0216360:CDS 30.0%
! ATTTTGCAAACAAAAAGAGG+AGG - chr2_1:62141257-62141276 Msa0216360:CDS 30.0%
AGATAACTCATGTGTCAAAA+AGG + chr2_1:62140767-62140786 None:intergenic 30.0%
AACGTTGAAATAGACTTCAA+CGG + chr2_1:62140811-62140830 None:intergenic 30.0%
!!! AAAGATTTTCTGGTTTGCAA+AGG + chr2_1:62140969-62140988 None:intergenic 30.0%
! GAAGGATACAAAAGATTTTC+TGG + chr2_1:62140979-62140998 None:intergenic 30.0%
!! AAAGCTTTAAGAGCTTTAGA+AGG + chr2_1:62140997-62141016 None:intergenic 30.0%
!! TTCTAAAGCTCTTAAAGCTT+TGG - chr2_1:62140996-62141015 Msa0216360:CDS 30.0%
TTCATCTTGAATCTTCTTCT+AGG - chr2_1:62141055-62141074 Msa0216360:CDS 30.0%
!! CCTCTTTTTGTTTGCAAAAT+TGG + chr2_1:62141257-62141276 None:intergenic 30.0%
! CCAATTTTGCAAACAAAAAG+AGG - chr2_1:62141254-62141273 Msa0216360:CDS 30.0%
! ATTTTGCAAACAAAAAGAGG+AGG - chr2_1:62141257-62141276 Msa0216360:CDS 30.0%
ACGTTGAAATAGACTTCAAC+GGG + chr2_1:62140810-62140829 None:intergenic 35.0%
GTTGAAGTCTATTTCAACGT+TGG - chr2_1:62140810-62140829 Msa0216360:CDS 35.0%
! ATTCTGTTGGTTAACACAAG+AGG - chr2_1:62141340-62141359 Msa0216360:CDS 35.0%
GATGATATCGAGAGAATCAA+TGG + chr2_1:62141423-62141442 None:intergenic 35.0%
AAGGTTGAAGGAGAAGAATT+TGG - chr2_1:62141700-62141719 Msa0216360:CDS 35.0%
AAGATTTGTGAGGAATGTAG+AGG - chr2_1:62141847-62141866 Msa0216360:CDS 35.0%
TCATAGAGTGAACTACTTGT+GGG - chr2_1:62141925-62141944 Msa0216360:CDS 35.0%
ACGTTGAAATAGACTTCAAC+GGG + chr2_1:62140810-62140829 None:intergenic 35.0%
GTTGAAGTCTATTTCAACGT+TGG - chr2_1:62140810-62140829 Msa0216360:CDS 35.0%
! ATTCTGTTGGTTAACACAAG+AGG - chr2_1:62141340-62141359 Msa0216360:CDS 35.0%
GATGATATCGAGAGAATCAA+TGG + chr2_1:62141423-62141442 None:intergenic 35.0%
AAGGTTGAAGGAGAAGAATT+TGG - chr2_1:62141700-62141719 Msa0216360:CDS 35.0%
AAGATTTGTGAGGAATGTAG+AGG - chr2_1:62141847-62141866 Msa0216360:CDS 35.0%
TCATAGAGTGAACTACTTGT+GGG - chr2_1:62141925-62141944 Msa0216360:CDS 35.0%
!! AGGCGTTGAGAAAGTTGAAA+CGG + chr2_1:62140717-62140736 None:intergenic 40.0%
TGCCATACAAAGAATGAACG+CGG + chr2_1:62140740-62140759 None:intergenic 40.0%
GAGTTATCTGAACTCTGTCT+CGG - chr2_1:62140778-62140797 Msa0216360:CDS 40.0%
GTTGAAATAGACTTCAACGG+GGG + chr2_1:62140808-62140827 None:intergenic 40.0%
CGTTGAAATAGACTTCAACG+GGG + chr2_1:62140809-62140828 None:intergenic 40.0%
AACACTGACGAAAGTTTCGT+CGG + chr2_1:62140872-62140891 None:intergenic 40.0%
ACGAAACTTTCGTCAGTGTT+TGG - chr2_1:62140872-62140891 Msa0216360:CDS 40.0%
ATGTGTTGGGAAAGTTTGCA+TGG - chr2_1:62140927-62140946 Msa0216360:CDS 40.0%
!! GGTTTCTGTAGTTTTGCCTA+AGG - chr2_1:62141017-62141036 Msa0216360:CDS 40.0%
!! GTAGTTTTGCCTAAGGTTGA+TGG - chr2_1:62141024-62141043 Msa0216360:CDS 40.0%
ACAACAAGACCATCAACCTT+AGG + chr2_1:62141036-62141055 None:intergenic 40.0%
AGCCATTGATCTTATACTCC+AGG - chr2_1:62141211-62141230 Msa0216360:CDS 40.0%
GCCATTGATCTTATACTCCA+GGG - chr2_1:62141212-62141231 Msa0216360:CDS 40.0%
TCCCTGGAGTATAAGATCAA+TGG + chr2_1:62141216-62141235 None:intergenic 40.0%
!! CAAAAAGAGGAGGCATTTCA+AGG - chr2_1:62141267-62141286 Msa0216360:CDS 40.0%
TCAACAACCAACAACCACAA+CGG - chr2_1:62141311-62141330 Msa0216360:CDS 40.0%
TAACACAAGAGGATGTGATC+AGG - chr2_1:62141351-62141370 Msa0216360:CDS 40.0%
GAGAATCAATGGAGTATGCT+GGG + chr2_1:62141412-62141431 None:intergenic 40.0%
AGAGAATCAATGGAGTATGC+TGG + chr2_1:62141413-62141432 None:intergenic 40.0%
TTGCAATTGTCGACAGTGAT+GGG - chr2_1:62141531-62141550 Msa0216360:CDS 40.0%
TCACAACAAGCAAGTGTGAA+GGG + chr2_1:62141578-62141597 None:intergenic 40.0%
ATCACAACAAGCAAGTGTGA+AGG + chr2_1:62141579-62141598 None:intergenic 40.0%
!! ACTTGCTTGTTGTGATGAGA+CGG - chr2_1:62141583-62141602 Msa0216360:intron 40.0%
GGATCTTGTGAGACTTGTAA+AGG - chr2_1:62141676-62141695 Msa0216360:intron 40.0%
TTGTGAGACTTGTAAAGGCA+AGG - chr2_1:62141681-62141700 Msa0216360:intron 40.0%
ACTTGTAAAGGCAAGGTTGA+AGG - chr2_1:62141688-62141707 Msa0216360:CDS 40.0%
ACAGCAATCAAAGAGCTCTT+GGG + chr2_1:62141887-62141906 None:intergenic 40.0%
CTCATAGAGTGAACTACTTG+TGG - chr2_1:62141924-62141943 Msa0216360:CDS 40.0%
! GAACTACTTGTGGGTTATTG+AGG - chr2_1:62141934-62141953 Msa0216360:CDS 40.0%
!! AGGCGTTGAGAAAGTTGAAA+CGG + chr2_1:62140717-62140736 None:intergenic 40.0%
TGCCATACAAAGAATGAACG+CGG + chr2_1:62140740-62140759 None:intergenic 40.0%
GAGTTATCTGAACTCTGTCT+CGG - chr2_1:62140778-62140797 Msa0216360:CDS 40.0%
GTTGAAATAGACTTCAACGG+GGG + chr2_1:62140808-62140827 None:intergenic 40.0%
CGTTGAAATAGACTTCAACG+GGG + chr2_1:62140809-62140828 None:intergenic 40.0%
AACACTGACGAAAGTTTCGT+CGG + chr2_1:62140872-62140891 None:intergenic 40.0%
ACGAAACTTTCGTCAGTGTT+TGG - chr2_1:62140872-62140891 Msa0216360:CDS 40.0%
ATGTGTTGGGAAAGTTTGCA+TGG - chr2_1:62140927-62140946 Msa0216360:CDS 40.0%
!! GGTTTCTGTAGTTTTGCCTA+AGG - chr2_1:62141017-62141036 Msa0216360:CDS 40.0%
!! GTAGTTTTGCCTAAGGTTGA+TGG - chr2_1:62141024-62141043 Msa0216360:CDS 40.0%
ACAACAAGACCATCAACCTT+AGG + chr2_1:62141036-62141055 None:intergenic 40.0%
AGCCATTGATCTTATACTCC+AGG - chr2_1:62141211-62141230 Msa0216360:CDS 40.0%
GCCATTGATCTTATACTCCA+GGG - chr2_1:62141212-62141231 Msa0216360:CDS 40.0%
TCCCTGGAGTATAAGATCAA+TGG + chr2_1:62141216-62141235 None:intergenic 40.0%
!! CAAAAAGAGGAGGCATTTCA+AGG - chr2_1:62141267-62141286 Msa0216360:CDS 40.0%
TCAACAACCAACAACCACAA+CGG - chr2_1:62141311-62141330 Msa0216360:CDS 40.0%
TAACACAAGAGGATGTGATC+AGG - chr2_1:62141351-62141370 Msa0216360:CDS 40.0%
GAGAATCAATGGAGTATGCT+GGG + chr2_1:62141412-62141431 None:intergenic 40.0%
AGAGAATCAATGGAGTATGC+TGG + chr2_1:62141413-62141432 None:intergenic 40.0%
TTGCAATTGTCGACAGTGAT+GGG - chr2_1:62141531-62141550 Msa0216360:CDS 40.0%
TCACAACAAGCAAGTGTGAA+GGG + chr2_1:62141578-62141597 None:intergenic 40.0%
ATCACAACAAGCAAGTGTGA+AGG + chr2_1:62141579-62141598 None:intergenic 40.0%
!! ACTTGCTTGTTGTGATGAGA+CGG - chr2_1:62141583-62141602 Msa0216360:intron 40.0%
GGATCTTGTGAGACTTGTAA+AGG - chr2_1:62141676-62141695 Msa0216360:intron 40.0%
TTGTGAGACTTGTAAAGGCA+AGG - chr2_1:62141681-62141700 Msa0216360:intron 40.0%
ACTTGTAAAGGCAAGGTTGA+AGG - chr2_1:62141688-62141707 Msa0216360:CDS 40.0%
ACAGCAATCAAAGAGCTCTT+GGG + chr2_1:62141887-62141906 None:intergenic 40.0%
CTCATAGAGTGAACTACTTG+TGG - chr2_1:62141924-62141943 Msa0216360:CDS 40.0%
! GAACTACTTGTGGGTTATTG+AGG - chr2_1:62141934-62141953 Msa0216360:CDS 40.0%
CATACAAAGAATGAACGCGG+AGG + chr2_1:62140737-62140756 None:intergenic 45.0%
CTCCGCGTTCATTCTTTGTA+TGG - chr2_1:62140735-62140754 Msa0216360:CDS 45.0%
TCTGAGGACTTCAATTGCCT+CGG + chr2_1:62140845-62140864 None:intergenic 45.0%
AGCTGTGACCATTCTGAATG+CGG - chr2_1:62140895-62140914 Msa0216360:CDS 45.0%
AACAGAATTCAGCACCGTTG+TGG + chr2_1:62141328-62141347 None:intergenic 45.0%
! ACAACGGTGCTGAATTCTGT+TGG - chr2_1:62141327-62141346 Msa0216360:CDS 45.0%
GATGTGATCAGGTTCTTGCT+TGG - chr2_1:62141362-62141381 Msa0216360:CDS 45.0%
AGGTTCTTGCTTGGTTCCAT+TGG - chr2_1:62141371-62141390 Msa0216360:CDS 45.0%
!! CGACTTTGAGATTGCCTCAA+CGG + chr2_1:62141492-62141511 None:intergenic 45.0%
GTTGCAATTGTCGACAGTGA+TGG - chr2_1:62141530-62141549 Msa0216360:CDS 45.0%
! TTGATGGCCTACATTGACTG+TGG - chr2_1:62141641-62141660 Msa0216360:intron 45.0%
ACAAGTCTCACAAGATCCTC+TGG + chr2_1:62141674-62141693 None:intergenic 45.0%
! TTTGACTTCCTTGACCAGTG+AGG - chr2_1:62141748-62141767 Msa0216360:CDS 45.0%
GCTATTCGGCAAGATTTGTG+AGG - chr2_1:62141837-62141856 Msa0216360:CDS 45.0%
CACAGCAATCAAAGAGCTCT+TGG + chr2_1:62141888-62141907 None:intergenic 45.0%
GAGGATGATTGCAGCTTAGT+TGG - chr2_1:62141953-62141972 Msa0216360:CDS 45.0%
CATACAAAGAATGAACGCGG+AGG + chr2_1:62140737-62140756 None:intergenic 45.0%
CTCCGCGTTCATTCTTTGTA+TGG - chr2_1:62140735-62140754 Msa0216360:CDS 45.0%
TCTGAGGACTTCAATTGCCT+CGG + chr2_1:62140845-62140864 None:intergenic 45.0%
AGCTGTGACCATTCTGAATG+CGG - chr2_1:62140895-62140914 Msa0216360:CDS 45.0%
AACAGAATTCAGCACCGTTG+TGG + chr2_1:62141328-62141347 None:intergenic 45.0%
! ACAACGGTGCTGAATTCTGT+TGG - chr2_1:62141327-62141346 Msa0216360:CDS 45.0%
GATGTGATCAGGTTCTTGCT+TGG - chr2_1:62141362-62141381 Msa0216360:CDS 45.0%
AGGTTCTTGCTTGGTTCCAT+TGG - chr2_1:62141371-62141390 Msa0216360:CDS 45.0%
!! CGACTTTGAGATTGCCTCAA+CGG + chr2_1:62141492-62141511 None:intergenic 45.0%
GTTGCAATTGTCGACAGTGA+TGG - chr2_1:62141530-62141549 Msa0216360:CDS 45.0%
! TTGATGGCCTACATTGACTG+TGG - chr2_1:62141641-62141660 Msa0216360:intron 45.0%
ACAAGTCTCACAAGATCCTC+TGG + chr2_1:62141674-62141693 None:intergenic 45.0%
! TTTGACTTCCTTGACCAGTG+AGG - chr2_1:62141748-62141767 Msa0216360:CDS 45.0%
GCTATTCGGCAAGATTTGTG+AGG - chr2_1:62141837-62141856 Msa0216360:CDS 45.0%
CACAGCAATCAAAGAGCTCT+TGG + chr2_1:62141888-62141907 None:intergenic 45.0%
GAGGATGATTGCAGCTTAGT+TGG - chr2_1:62141953-62141972 Msa0216360:CDS 45.0%
GACTTCAATTGCCTCGGCAA+CGG + chr2_1:62140839-62140858 None:intergenic 50.0%
AAGTTTCGTCGGAGCTTCTG+AGG + chr2_1:62140861-62140880 None:intergenic 50.0%
GACAACGACCGCATTCAGAA+TGG + chr2_1:62140906-62140925 None:intergenic 50.0%
TGCGGTCGTTGTCAATGTGT+TGG - chr2_1:62140913-62140932 Msa0216360:CDS 50.0%
GCGGTCGTTGTCAATGTGTT+GGG - chr2_1:62140914-62140933 Msa0216360:CDS 50.0%
TTCAGCACCGTTGTGGTTGT+TGG + chr2_1:62141321-62141340 None:intergenic 50.0%
TCAATGGAGTATGCTGGGAG+TGG + chr2_1:62141407-62141426 None:intergenic 50.0%
AGACGCGGGGGAATAGTAAT+CGG + chr2_1:62141465-62141484 None:intergenic 50.0%
! GACAGTGATGGGACATTCGT+CGG - chr2_1:62141542-62141561 Msa0216360:intron 50.0%
TGCGGACAAAGTTGTGATCG+CGG + chr2_1:62141615-62141634 None:intergenic 50.0%
CGATCACAACTTTGTCCGCA+GGG - chr2_1:62141615-62141634 Msa0216360:intron 50.0%
GATCACAACTTTGTCCGCAG+GGG - chr2_1:62141616-62141635 Msa0216360:intron 50.0%
TCTCACAAGATCCTCTGGTG+GGG + chr2_1:62141669-62141688 None:intergenic 50.0%
GTCTCACAAGATCCTCTGGT+GGG + chr2_1:62141670-62141689 None:intergenic 50.0%
AGTCTCACAAGATCCTCTGG+TGG + chr2_1:62141671-62141690 None:intergenic 50.0%
TTCCTTGACCAGTGAGGTGT+TGG - chr2_1:62141754-62141773 Msa0216360:CDS 50.0%
CGCAAGGTCATCGAGCTATT+CGG - chr2_1:62141823-62141842 Msa0216360:CDS 50.0%
GACTTCAATTGCCTCGGCAA+CGG + chr2_1:62140839-62140858 None:intergenic 50.0%
AAGTTTCGTCGGAGCTTCTG+AGG + chr2_1:62140861-62140880 None:intergenic 50.0%
GACAACGACCGCATTCAGAA+TGG + chr2_1:62140906-62140925 None:intergenic 50.0%
TGCGGTCGTTGTCAATGTGT+TGG - chr2_1:62140913-62140932 Msa0216360:CDS 50.0%
GCGGTCGTTGTCAATGTGTT+GGG - chr2_1:62140914-62140933 Msa0216360:CDS 50.0%
TTCAGCACCGTTGTGGTTGT+TGG + chr2_1:62141321-62141340 None:intergenic 50.0%
TCAATGGAGTATGCTGGGAG+TGG + chr2_1:62141407-62141426 None:intergenic 50.0%
AGACGCGGGGGAATAGTAAT+CGG + chr2_1:62141465-62141484 None:intergenic 50.0%
! GACAGTGATGGGACATTCGT+CGG - chr2_1:62141542-62141561 Msa0216360:intron 50.0%
TGCGGACAAAGTTGTGATCG+CGG + chr2_1:62141615-62141634 None:intergenic 50.0%
CGATCACAACTTTGTCCGCA+GGG - chr2_1:62141615-62141634 Msa0216360:intron 50.0%
GATCACAACTTTGTCCGCAG+GGG - chr2_1:62141616-62141635 Msa0216360:intron 50.0%
TCTCACAAGATCCTCTGGTG+GGG + chr2_1:62141669-62141688 None:intergenic 50.0%
GTCTCACAAGATCCTCTGGT+GGG + chr2_1:62141670-62141689 None:intergenic 50.0%
AGTCTCACAAGATCCTCTGG+TGG + chr2_1:62141671-62141690 None:intergenic 50.0%
TTCCTTGACCAGTGAGGTGT+TGG - chr2_1:62141754-62141773 Msa0216360:CDS 50.0%
CGCAAGGTCATCGAGCTATT+CGG - chr2_1:62141823-62141842 Msa0216360:CDS 50.0%
CCACAAGATTCTGTGCTCCC+TGG + chr2_1:62141232-62141251 None:intergenic 55.0%
! CCAGGGAGCACAGAATCTTG+TGG - chr2_1:62141229-62141248 Msa0216360:CDS 55.0%
!! GAGTGGACTGAAGTGGCCAA+TGG + chr2_1:62141390-62141409 None:intergenic 55.0%
!! ATGCTGGGAGTGGACTGAAG+TGG + chr2_1:62141397-62141416 None:intergenic 55.0%
TAATCGGTGGCGAGCACATC+GGG + chr2_1:62141449-62141468 None:intergenic 55.0%
GTAATCGGTGGCGAGCACAT+CGG + chr2_1:62141450-62141469 None:intergenic 55.0%
GCGATCACAACTTTGTCCGC+AGG - chr2_1:62141614-62141633 Msa0216360:intron 55.0%
TTTGTCCGCAGGGGACTTGA+TGG - chr2_1:62141625-62141644 Msa0216360:intron 55.0%
! TGGGGCACCACAGTCAATGT+AGG + chr2_1:62141651-62141670 None:intergenic 55.0%
GCGTGCTTTCCTAACCTCGT+CGG + chr2_1:62141806-62141825 None:intergenic 55.0%
! CGAGGTTAGGAAAGCACGCA+AGG - chr2_1:62141807-62141826 Msa0216360:CDS 55.0%
CCACAAGATTCTGTGCTCCC+TGG + chr2_1:62141232-62141251 None:intergenic 55.0%
! CCAGGGAGCACAGAATCTTG+TGG - chr2_1:62141229-62141248 Msa0216360:CDS 55.0%
!! GAGTGGACTGAAGTGGCCAA+TGG + chr2_1:62141390-62141409 None:intergenic 55.0%
!! ATGCTGGGAGTGGACTGAAG+TGG + chr2_1:62141397-62141416 None:intergenic 55.0%
TAATCGGTGGCGAGCACATC+GGG + chr2_1:62141449-62141468 None:intergenic 55.0%
GTAATCGGTGGCGAGCACAT+CGG + chr2_1:62141450-62141469 None:intergenic 55.0%
GCGATCACAACTTTGTCCGC+AGG - chr2_1:62141614-62141633 Msa0216360:intron 55.0%
TTTGTCCGCAGGGGACTTGA+TGG - chr2_1:62141625-62141644 Msa0216360:intron 55.0%
! TGGGGCACCACAGTCAATGT+AGG + chr2_1:62141651-62141670 None:intergenic 55.0%
GCGTGCTTTCCTAACCTCGT+CGG + chr2_1:62141806-62141825 None:intergenic 55.0%
! CGAGGTTAGGAAAGCACGCA+AGG - chr2_1:62141807-62141826 Msa0216360:CDS 55.0%
! AACGTTGGCTACCGTTGCCG+AGG - chr2_1:62140825-62140844 Msa0216360:CDS 60.0%
AATCGGTGGCGAGCACATCG+GGG + chr2_1:62141448-62141467 None:intergenic 60.0%
CGCGGGGGAATAGTAATCGG+TGG + chr2_1:62141462-62141481 None:intergenic 60.0%
TGCCTCAACGGACGAAGACG+CGG + chr2_1:62141480-62141499 None:intergenic 60.0%
GTAGGCCATCAAGTCCCCTG+CGG + chr2_1:62141633-62141652 None:intergenic 60.0%
GGCCAACACCTCACTGGTCA+AGG + chr2_1:62141759-62141778 None:intergenic 60.0%
AGACGAGGCCAACACCTCAC+TGG + chr2_1:62141765-62141784 None:intergenic 60.0%
CTCCTCGTCAGAGGAAGACG+AGG + chr2_1:62141780-62141799 None:intergenic 60.0%
GAGGAGAGTCCGACGAGGTT+AGG - chr2_1:62141794-62141813 Msa0216360:CDS 60.0%
! AACGTTGGCTACCGTTGCCG+AGG - chr2_1:62140825-62140844 Msa0216360:CDS 60.0%
AATCGGTGGCGAGCACATCG+GGG + chr2_1:62141448-62141467 None:intergenic 60.0%
CGCGGGGGAATAGTAATCGG+TGG + chr2_1:62141462-62141481 None:intergenic 60.0%
TGCCTCAACGGACGAAGACG+CGG + chr2_1:62141480-62141499 None:intergenic 60.0%
GTAGGCCATCAAGTCCCCTG+CGG + chr2_1:62141633-62141652 None:intergenic 60.0%
GGCCAACACCTCACTGGTCA+AGG + chr2_1:62141759-62141778 None:intergenic 60.0%
AGACGAGGCCAACACCTCAC+TGG + chr2_1:62141765-62141784 None:intergenic 60.0%
CTCCTCGTCAGAGGAAGACG+AGG + chr2_1:62141780-62141799 None:intergenic 60.0%
GAGGAGAGTCCGACGAGGTT+AGG - chr2_1:62141794-62141813 Msa0216360:CDS 60.0%
CTCAACGGACGAAGACGCGG+GGG + chr2_1:62141477-62141496 None:intergenic 65.0%
CCTCAACGGACGAAGACGCG+GGG + chr2_1:62141478-62141497 None:intergenic 65.0%
GCCTCAACGGACGAAGACGC+GGG + chr2_1:62141479-62141498 None:intergenic 65.0%
TGACTGTGGTGCCCCACCAG+AGG - chr2_1:62141655-62141674 Msa0216360:intron 65.0%
GGCCTCGTCTTCCTCTGACG+AGG - chr2_1:62141775-62141794 Msa0216360:CDS 65.0%
CGTCGGACTCTCCTCGTCAG+AGG + chr2_1:62141789-62141808 None:intergenic 65.0%
CTGACGAGGAGAGTCCGACG+AGG - chr2_1:62141789-62141808 Msa0216360:CDS 65.0%
CTCAACGGACGAAGACGCGG+GGG + chr2_1:62141477-62141496 None:intergenic 65.0%
CCTCAACGGACGAAGACGCG+GGG + chr2_1:62141478-62141497 None:intergenic 65.0%
GCCTCAACGGACGAAGACGC+GGG + chr2_1:62141479-62141498 None:intergenic 65.0%
TGACTGTGGTGCCCCACCAG+AGG - chr2_1:62141655-62141674 Msa0216360:intron 65.0%
GGCCTCGTCTTCCTCTGACG+AGG - chr2_1:62141775-62141794 Msa0216360:CDS 65.0%
CGTCGGACTCTCCTCGTCAG+AGG + chr2_1:62141789-62141808 None:intergenic 65.0%
CTGACGAGGAGAGTCCGACG+AGG - chr2_1:62141789-62141808 Msa0216360:CDS 65.0%
CCCCGCGTCTTCGTCCGTTG+AGG - chr2_1:62141475-62141494 Msa0216360:CDS 70.0%
CCCCGCGTCTTCGTCCGTTG+AGG - chr2_1:62141475-62141494 Msa0216360:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 62140682 62142080 62140682 ID=Msa0216360;Name=Msa0216360
chr2_1 mRNA 62140682 62142080 62140682 ID=Msa0216360-mRNA-1;Parent=Msa0216360;Name=Msa0216360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=72|1|1|1|1|1|2|47|384
chr2_1 exon 62140682 62141560 62140682 ID=Msa0216360-mRNA-1:exon:17238;Parent=Msa0216360-mRNA-1
chr2_1 exon 62141686 62142080 62141686 ID=Msa0216360-mRNA-1:exon:17237;Parent=Msa0216360-mRNA-1
chr2_1 five_prime_UTR 62142009 62142080 62142009 ID=Msa0216360-mRNA-1:five_prime_utr;Parent=Msa0216360-mRNA-1
chr2_1 CDS 62141686 62142008 62141686 ID=Msa0216360-mRNA-1:cds;Parent=Msa0216360-mRNA-1
chr2_1 CDS 62140729 62141560 62140729 ID=Msa0216360-mRNA-1:cds;Parent=Msa0216360-mRNA-1
chr2_1 three_prime_UTR 62140682 62140728 62140682 ID=Msa0216360-mRNA-1:three_prime_utr;Parent=Msa0216360-mRNA-1
Gene Sequence

>Msa0216360

ATGGCAGTATCCTTTTTGACACATGAGTTATCTGAACTCTGTCTCGGTAAGCCCCCGTTGAAGTCTATTTCAACGTTGGCTACCGTTGCCGAGGCAATTGAAGTCCTCAGAAGCTCCGACGAAACTTTCGTCAGTGTTTGGAGCTGTGACCATTCTGAATGCGGTCGTTGTCAATGTGTTGGGAAAGTTTGCATGGTCGATGTTATTTGTTACCTTTGCAAACCAGAAAATCTTTTGTATCCTTCTAAAGCTCTTAAAGCTTTGGTTTCTGTAGTTTTGCCTAAGGTTGATGGTCTTGTTGTTCATCTTGAATCTTCTTCTAGCTTATTAGAAGCCATTGATCTTATACTCCAGGGAGCACAGAATCTTGTGGTGCCAATTTTGCAAACAAAAAGAGGAGGCATTTCAAGGAGAAAACGTCAACAAAAGTCATCAACAACCAACAACCACAACGGTGCTGAATTCTGTTGGTTAACACAAGAGGATGTGATCAGGTTCTTGCTTGGTTCCATTGGCCACTTCAGTCCACTCCCAGCATACTCCATTGATTCTCTCGATATCATCAGCCCCGATGTGCTCGCCACCGATTACTATTCCCCCGCGTCTTCGTCCGTTGAGGCAATCTCAAAGTCGCTTGCACAACAAATTTCTGTTGCAATTGTCGACAGTGATGGGACATTCGTCGGTGAGATATCGCCCTTCACACTTGCTTGTTGTGATGAGACGGTTGCTGCCGCGATCACAACTTTGTCCGCAGGGGACTTGATGGCCTACATTGACTGTGGTGCCCCACCAGAGGATCTTGTGAGACTTGTAAAGGCAAGGTTGAAGGAGAAGAATTTGGAGAAATTGCTACAAGAGTTTATAATTTTGACTTCCTTGACCAGTGAGGTGTTGGCCTCGTCTTCCTCTGACGAGGAGAGTCCGACGAGGTTAGGAAAGCACGCAAGGTCATCGAGCTATTCGGCAAGATTTGTGAGGAATGTAGAGGCTATTGTTTGTCATCCCAAGAGCTCTTTGATTGCTGTGATGATTCAAGCAATTTCTCATAGAGTGAACTACTTGTGGGTTATTGAGGATGATTGCAGCTTAGTTGGTATTGTTACTTTTTCTAATATCTTGAAGGTGTTCAAAGAGCAATTAGAAAATATTTAG

Protein sequence

>Msa0216360

MAVSFLTHELSELCLGKPPLKSISTLATVAEAIEVLRSSDETFVSVWSCDHSECGRCQCVGKVCMVDVICYLCKPENLLYPSKALKALVSVVLPKVDGLVVHLESSSSLLEAIDLILQGAQNLVVPILQTKRGGISRRKRQQKSSTTNNHNGAEFCWLTQEDVIRFLLGSIGHFSPLPAYSIDSLDIISPDVLATDYYSPASSSVEAISKSLAQQISVAIVDSDGTFVGEISPFTLACCDETVAAAITTLSAGDLMAYIDCGAPPEDLVRLVKARLKEKNLEKLLQEFIILTSLTSEVLASSSSDEESPTRLGKHARSSSYSARFVRNVEAIVCHPKSSLIAVMIQAISHRVNYLWVIEDDCSLVGIVTFSNILKVFKEQLENI*