AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0610700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610700 MtrunA17_Chr4g0043721 87.129 202 4 2 3 204 1 180 9.64e-126 352
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610700 AT1G21065.1 81.457 151 28 0 54 204 67 217 1.69e-91 267

Find 67 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTGAACAGGATCTTTC+TGG 0.116045 4_2:-58539574 Msa0610700:CDS
TGCTGCGCTTTCACGCTTAA+TGG 0.223647 4_2:+58539804 None:intergenic
ACTCAGATTACATTGTAAAA+AGG 0.228703 4_2:+58536446 None:intergenic
TGTCTATGTTTCAGGGTATA+TGG 0.238559 4_2:-58536609 Msa0610700:intron
TTAAGCTTTCCATTTGTAAT+TGG 0.251097 4_2:+58537773 None:intergenic
AAATAAAATGACTAATGATT+TGG 0.299561 4_2:+58536360 None:intergenic
CACTTGCTGCCCAGTCGTTT+TGG 0.313948 4_2:-58540006 Msa0610700:CDS
AGAGTGGTTGTCACTCTTAA+TGG 0.316738 4_2:-58536553 Msa0610700:CDS
CTGAATCCACCGCTCCCAAA+TGG 0.374424 4_2:-58539752 Msa0610700:CDS
CATATTAAGTCATCAATGTT+TGG 0.383226 4_2:-58537898 Msa0610700:CDS
CACAGTTGCATTGCATTCAT+AGG 0.389222 4_2:+58536418 None:intergenic
AATTCGATTGAGGAATGTTT+CGG 0.407385 4_2:+58539358 None:intergenic
GCTTTGATTCGCCTTCATTT+CGG 0.408180 4_2:-58536506 Msa0610700:three_prime_UTR
TTAATGGAATATGAGGTGTT+TGG 0.431682 4_2:-58536537 Msa0610700:exon
TTCATTTCGGAACTTATAGC+TGG 0.432935 4_2:-58536493 Msa0610700:three_prime_UTR
TTCAGGATACCAATTACAAA+TGG 0.444301 4_2:-58537782 Msa0610700:intron
GTCACTCTTAATGGAATATG+AGG 0.455709 4_2:-58536544 Msa0610700:exon
AGATGACAGCCGCGTTTGTA+AGG 0.461854 4_2:+58539705 None:intergenic
GATAGGGAAAGAAATTGAAC+AGG 0.468167 4_2:-58539584 Msa0610700:CDS
GCAAGTGCTACTCACACGTT+TGG 0.472072 4_2:+58540022 None:intergenic
TGCAGGGGCCATCTGCACCT+TGG 0.473611 4_2:-58539249 Msa0610700:intron
CCCTCTAGAGTGTGCTTCCA+AGG 0.475370 4_2:+58539232 None:intergenic
TGAATCCACCGCTCCCAAAT+GGG 0.475393 4_2:-58539751 Msa0610700:CDS
AGCTATAAGTTCCGAAATGA+AGG 0.482886 4_2:+58536495 None:intergenic
TGTGTAGTTTACGTGGAGGA+AGG 0.486263 4_2:-58540114 None:intergenic
AAAATATCAACCAAAACGAC+TGG 0.500455 4_2:+58539996 None:intergenic
CTGTCATCTTGTTACTCCCA+AGG 0.510680 4_2:-58539691 Msa0610700:intron
GCTTAACATGGGAACCTGGC+AGG 0.523728 4_2:-58537756 Msa0610700:intron
GTATATGGCTTTGTGAGCAC+CGG 0.524933 4_2:-58536594 Msa0610700:CDS
CTGGGCCCATTTGGGAGCGG+TGG 0.526538 4_2:+58539746 None:intergenic
GAAAGCTTAACATGGGAACC+TGG 0.533663 4_2:-58537760 Msa0610700:CDS
TTTATATTGTCAGATGGAGA+TGG 0.537561 4_2:-58540060 Msa0610700:exon
TTAGTGTTTATATTGTCAGA+TGG 0.539378 4_2:-58540066 Msa0610700:exon
ATATATACTCACAGAAGAGA+TGG 0.543708 4_2:+58539533 None:intergenic
TTTCCTTCTAGGAAACATGC+AGG 0.544291 4_2:-58539853 Msa0610700:intron
AGTAAACGATGTTACCTGCC+AGG 0.545004 4_2:+58537742 None:intergenic
TTTCTGGGCCCATTTGGGAG+CGG 0.545582 4_2:+58539743 None:intergenic
TTGTCAGATGGAGATGGGTG+TGG 0.547361 4_2:-58540054 Msa0610700:exon
ATTGATGACTTAATATGAGC+CGG 0.551506 4_2:+58537904 None:intergenic
GAATAATTATATGCACTAAG+TGG 0.552789 4_2:+58536382 None:intergenic
GTGTGCTTCCAAGGTGCAGA+TGG 0.554212 4_2:+58539241 None:intergenic
CTTGAAGACAAAAGAATCCA+TGG 0.555822 4_2:-58539775 Msa0610700:CDS
TTATATTGTCAGATGGAGAT+GGG 0.562843 4_2:-58540059 Msa0610700:exon
CCTCGGGAACAATTCGATTG+AGG 0.564302 4_2:+58539348 None:intergenic
TGTAGTTTACGTGGAGGAAG+GGG 0.564364 4_2:-58540112 None:intergenic
CCTTGGAAGCACACTCTAGA+GGG 0.564381 4_2:-58539232 Msa0610700:intron
GTGTAGTTTACGTGGAGGAA+GGG 0.566010 4_2:-58540113 None:intergenic
TGTAGGTCATGATGACATGC+CGG 0.579488 4_2:-58537923 Msa0610700:intron
AATTATATGCACTAAGTGGT+CGG 0.589344 4_2:+58536386 None:intergenic
TATATACTCACAGAAGAGAT+GGG 0.591373 4_2:+58539534 None:intergenic
TTTGTAAGGTGGTAGAGCGA+TGG 0.592048 4_2:+58539719 None:intergenic
GGGAGCGGTGGATTCAGCCA+TGG 0.593135 4_2:+58539758 None:intergenic
TACAAATGGAAAGCTTAACA+TGG 0.595390 4_2:-58537768 Msa0610700:CDS
ACAACCACTCTTCGTGAGGT+AGG 0.608382 4_2:+58536565 None:intergenic
TGACAGCCGCGTTTGTAAGG+TGG 0.611847 4_2:+58539708 None:intergenic
TCATCCTACCTCACGAAGAG+TGG 0.624302 4_2:-58536569 Msa0610700:CDS
TTCGTGAGGTAGGATGATCC+CGG 0.626171 4_2:+58536575 None:intergenic
TATATGGCTTTGTGAGCACC+GGG 0.627807 4_2:-58536593 Msa0610700:CDS
CCTCAATCGAATTGTTCCCG+AGG 0.630614 4_2:-58539348 Msa0610700:intron
ACCTTGGAAGCACACTCTAG+AGG 0.633350 4_2:-58539233 Msa0610700:CDS
GATCTTTCTGGATTCAAGTG+CGG 0.636539 4_2:-58539562 Msa0610700:CDS
ACAAATGGAAAGCTTAACAT+GGG 0.648618 4_2:-58537767 Msa0610700:CDS
AAATATCAACCAAAACGACT+GGG 0.650300 4_2:+58539997 None:intergenic
AATGTGTGTAGTTTACGTGG+AGG 0.653920 4_2:-58540118 None:intergenic
AGAAATGTGTGTAGTTTACG+TGG 0.688178 4_2:-58540121 None:intergenic
AGTGACAACCACTCTTCGTG+AGG 0.692534 4_2:+58536561 None:intergenic
GCTCTACCACCTTACAAACG+CGG 0.803139 4_2:-58539714 Msa0610700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAACTTTAAATATGATTA+AGG - chr4_2:58537228-58537247 Msa0610700:intron 10.0%
!!! TTTGAAATATTTTATAATGT+TGG - chr4_2:58539603-58539622 Msa0610700:intron 10.0%
!! AGTAAATGAAAAATGAAATT+GGG + chr4_2:58536761-58536780 None:intergenic 15.0%
!! AAGTAAATGAAAAATGAAAT+TGG + chr4_2:58536762-58536781 None:intergenic 15.0%
!! ATGAATGAATAAACAAATAT+TGG + chr4_2:58537086-58537105 None:intergenic 15.0%
!! TATAACAAAAGAAAAAACAA+AGG + chr4_2:58537397-58537416 None:intergenic 15.0%
!!! TTTCTTTTTGTAAAATAACA+AGG + chr4_2:58539062-58539081 None:intergenic 15.0%
!!! AATTTGCTTATTAAAAATTG+TGG - chr4_2:58539396-58539415 Msa0610700:CDS 15.0%
!!! AATGTGTTTTTTTATTCATA+AGG + chr4_2:58539498-58539517 None:intergenic 15.0%
!! AAATAAAATGACTAATGATT+TGG + chr4_2:58540039-58540058 None:intergenic 15.0%
!!! ATCTTTTTTTTTTTCCTTCT+AGG - chr4_2:58536532-58536551 Msa0610700:exon 20.0%
!! TAAATGAAAAATGAAATTGG+GGG + chr4_2:58536759-58536778 None:intergenic 20.0%
!! GTAAATGAAAAATGAAATTG+GGG + chr4_2:58536760-58536779 None:intergenic 20.0%
!! TCTGAAGAAAAAAAATAGTT+GGG + chr4_2:58536794-58536813 None:intergenic 20.0%
!! ATCTGAAGAAAAAAAATAGT+TGG + chr4_2:58536795-58536814 None:intergenic 20.0%
!!! ACTATTTTTTTTCTTCAGAT+AGG - chr4_2:58536795-58536814 Msa0610700:intron 20.0%
!!! CTATTTTTTTTCTTCAGATA+GGG - chr4_2:58536796-58536815 Msa0610700:intron 20.0%
!! AATAAACAAATATTGGTGAA+TGG + chr4_2:58537079-58537098 None:intergenic 20.0%
!! TTTAAATATGATTAAGGAGT+AGG - chr4_2:58537234-58537253 Msa0610700:intron 20.0%
!! TAGTTTATAGTAGGTATAAT+GGG + chr4_2:58537886-58537905 None:intergenic 20.0%
!! ATAGTTTATAGTAGGTATAA+TGG + chr4_2:58537887-58537906 None:intergenic 20.0%
!! ACTTCATTATAGTTTATAGT+AGG + chr4_2:58537895-58537914 None:intergenic 20.0%
!! AAATATTTAGATTCTGTTCT+TGG - chr4_2:58538153-58538172 Msa0610700:intron 20.0%
!! AATATTTAGATTCTGTTCTT+GGG - chr4_2:58538154-58538173 Msa0610700:intron 20.0%
!! AAGCAAAAAAATGCTTAAAA+TGG + chr4_2:58538255-58538274 None:intergenic 20.0%
!!! AATTCAATAGTAACTTTTGT+GGG + chr4_2:58538737-58538756 None:intergenic 20.0%
!!! AAATTCAATAGTAACTTTTG+TGG + chr4_2:58538738-58538757 None:intergenic 20.0%
!! GAAAATGATTAATAATTGGT+AGG + chr4_2:58538799-58538818 None:intergenic 20.0%
!!! GATTTTTATAAGAATTTGGT+CGG + chr4_2:58538821-58538840 None:intergenic 20.0%
!!! TCGTGATTTTTATAAGAATT+TGG + chr4_2:58538825-58538844 None:intergenic 20.0%
! TTAGTGTTTATATTGTCAGA+TGG - chr4_2:58536330-58536349 Msa0610700:three_prime_UTR 25.0%
! AAAATTGTGAGATTGAGATT+GGG + chr4_2:58536736-58536755 None:intergenic 25.0%
! CTGAAGAAAAAAAATAGTTG+GGG + chr4_2:58536793-58536812 None:intergenic 25.0%
! AAAAGAAAAAACAAAGGCAA+AGG + chr4_2:58537391-58537410 None:intergenic 25.0%
! ATAAACGCTAATCATATAAG+TGG + chr4_2:58537444-58537463 None:intergenic 25.0%
! TCTTGTATATAACATTGCTT+CGG - chr4_2:58537732-58537751 Msa0610700:intron 25.0%
!! TCCATCTCAGTTTAATTTAT+TGG - chr4_2:58538121-58538140 Msa0610700:intron 25.0%
! ACCAATAAATTAAACTGAGA+TGG + chr4_2:58538125-58538144 None:intergenic 25.0%
! ATATTTAGATTCTGTTCTTG+GGG - chr4_2:58538155-58538174 Msa0610700:intron 25.0%
! CTTAATATCCAAACACAAAT+TGG + chr4_2:58538228-58538247 None:intergenic 25.0%
!! ATTTGATAGTCTAAGTAAAC+TGG + chr4_2:58538328-58538347 None:intergenic 25.0%
! GAAAACACGTAAATTATACT+TGG + chr4_2:58538393-58538412 None:intergenic 25.0%
! CATATTAAGTCATCAATGTT+TGG - chr4_2:58538498-58538517 Msa0610700:intron 25.0%
! TTAAGCTTTCCATTTGTAAT+TGG + chr4_2:58538626-58538645 None:intergenic 25.0%
! ACTATTGAATTTGAGTATGT+TGG - chr4_2:58538746-58538765 Msa0610700:intron 25.0%
! GTCGGAAAATGATTAATAAT+TGG + chr4_2:58538803-58538822 None:intergenic 25.0%
!!! GTCATTGATTTTTTTACTCT+GGG + chr4_2:58538848-58538867 None:intergenic 25.0%
!!! AGTCATTGATTTTTTTACTC+TGG + chr4_2:58538849-58538868 None:intergenic 25.0%
! GAGTAAAAAAATCAATGACT+AGG - chr4_2:58538849-58538868 Msa0610700:intron 25.0%
! CTAAATATATGGCATTAATG+AGG + chr4_2:58538961-58538980 None:intergenic 25.0%
! AATGCCATATATTTAGTGAT+TGG - chr4_2:58538965-58538984 Msa0610700:intron 25.0%
! TCTACCAATCACTAAATATA+TGG + chr4_2:58538972-58538991 None:intergenic 25.0%
! ATTAAATTCCTTACATCACA+CGG - chr4_2:58539193-58539212 Msa0610700:intron 25.0%
!!! GATGGAAAACTTATTTTCTT+AGG - chr4_2:58539331-58539350 Msa0610700:intron 25.0%
!! TAAATTTTCTTCAAAGCCTT+CGG + chr4_2:58539423-58539442 None:intergenic 25.0%
!!! AACGTCATTTATTTTTGTAC+TGG - chr4_2:58539450-58539469 Msa0610700:intron 25.0%
!!! ACGTCATTTATTTTTGTACT+GGG - chr4_2:58539451-58539470 Msa0610700:intron 25.0%
! CATAAGGATAAACTTTATTG+AGG + chr4_2:58539482-58539501 None:intergenic 25.0%
! CTCAGATTACATTGTAAAAA+GGG + chr4_2:58539952-58539971 None:intergenic 25.0%
! ACTCAGATTACATTGTAAAA+AGG + chr4_2:58539953-58539972 None:intergenic 25.0%
! GAATAATTATATGCACTAAG+TGG + chr4_2:58540017-58540036 None:intergenic 25.0%
TTTATATTGTCAGATGGAGA+TGG - chr4_2:58536336-58536355 Msa0610700:three_prime_UTR 30.0%
TTATATTGTCAGATGGAGAT+GGG - chr4_2:58536337-58536356 Msa0610700:three_prime_UTR 30.0%
AAATATCAACCAAAACGACT+GGG + chr4_2:58536402-58536421 None:intergenic 30.0%
AAAATATCAACCAAAACGAC+TGG + chr4_2:58536403-58536422 None:intergenic 30.0%
! ATTCTTTTGTCTTCAAGGTT+GGG + chr4_2:58536618-58536637 None:intergenic 30.0%
GAAAATTGTGAGATTGAGAT+TGG + chr4_2:58536737-58536756 None:intergenic 30.0%
TATATACTCACAGAAGAGAT+GGG + chr4_2:58536865-58536884 None:intergenic 30.0%
ATATATACTCACAGAAGAGA+TGG + chr4_2:58536866-58536885 None:intergenic 30.0%
AATTTGTGCTGAAATGAAGT+TGG - chr4_2:58536942-58536961 Msa0610700:intron 30.0%
AATTCGATTGAGGAATGTTT+CGG + chr4_2:58537041-58537060 None:intergenic 30.0%
! GTAGTTTTTGTAAGCTATCA+TGG + chr4_2:58537350-58537369 None:intergenic 30.0%
AAGAGAAAATTGCATTACTG+AGG + chr4_2:58537516-58537535 None:intergenic 30.0%
AATGGTTCTTCAAATGATAG+AGG + chr4_2:58537596-58537615 None:intergenic 30.0%
TTACAATCAGAGTATGTGAA+TGG + chr4_2:58537614-58537633 None:intergenic 30.0%
GAAGCAATGTTATATACAAG+AGG + chr4_2:58537733-58537752 None:intergenic 30.0%
TGTTTAGTTGTTGCATGTTA+CGG + chr4_2:58537774-58537793 None:intergenic 30.0%
! ATGTCCGTTAATTTTGAACT+GGG - chr4_2:58538061-58538080 Msa0610700:intron 30.0%
! CTTATTATGTAATTTGCACG+TGG - chr4_2:58538199-58538218 Msa0610700:intron 30.0%
!!! CTTTGGTTTTGCAATTTTGT+AGG - chr4_2:58538456-58538475 Msa0610700:intron 30.0%
! ATTGATGACTTAATATGAGC+CGG + chr4_2:58538495-58538514 None:intergenic 30.0%
TGAAAATACAAGACATCAGT+AGG + chr4_2:58538598-58538617 None:intergenic 30.0%
! TACTGATGTCTTGTATTTTC+AGG - chr4_2:58538597-58538616 Msa0610700:intron 30.0%
TTCAGGATACCAATTACAAA+TGG - chr4_2:58538614-58538633 Msa0610700:intron 30.0%
TACAAATGGAAAGCTTAACA+TGG - chr4_2:58538628-58538647 Msa0610700:intron 30.0%
ACAAATGGAAAGCTTAACAT+GGG - chr4_2:58538629-58538648 Msa0610700:intron 30.0%
! TTGAACATATGTTTTCAGTG+TGG - chr4_2:58538902-58538921 Msa0610700:intron 30.0%
! TGAACATATGTTTTCAGTGT+GGG - chr4_2:58538903-58538922 Msa0610700:intron 30.0%
ATGGCATTAATGAGGAATTA+CGG + chr4_2:58538953-58538972 None:intergenic 30.0%
GTAGATATGTTTCAAACCAT+TGG - chr4_2:58538987-58539006 Msa0610700:intron 30.0%
AACAGTGTATTGTATACCAA+TGG + chr4_2:58539006-58539025 None:intergenic 30.0%
AAATGTGTGAAATGCAAAAG+TGG + chr4_2:58539161-58539180 None:intergenic 30.0%
! GCATTTCACACATTTTTACT+TGG - chr4_2:58539166-58539185 Msa0610700:intron 30.0%
TTAAATTCCTTACATCACAC+GGG - chr4_2:58539194-58539213 Msa0610700:intron 30.0%
TGCTACTAACAACATTACAT+TGG - chr4_2:58539285-58539304 Msa0610700:intron 30.0%
TACTAACAACATTACATTGG+TGG - chr4_2:58539288-58539307 Msa0610700:intron 30.0%
TATTAAAAATTGTGGTCCGA+AGG - chr4_2:58539404-58539423 Msa0610700:CDS 30.0%
!!! CGTCATTTATTTTTGTACTG+GGG - chr4_2:58539452-58539471 Msa0610700:intron 30.0%
! TTAATGGAATATGAGGTGTT+TGG - chr4_2:58539859-58539878 Msa0610700:intron 30.0%
AATTATATGCACTAAGTGGT+CGG + chr4_2:58540013-58540032 None:intergenic 30.0%
!! TTTGGTTGATATTTTCGACC+TGG - chr4_2:58536408-58536427 Msa0610700:three_prime_UTR 35.0%
!! TTGGTTGATATTTTCGACCT+GGG - chr4_2:58536409-58536428 Msa0610700:three_prime_UTR 35.0%
! GATTCTTTTGTCTTCAAGGT+TGG + chr4_2:58536619-58536638 None:intergenic 35.0%
! CATGGATTCTTTTGTCTTCA+AGG + chr4_2:58536623-58536642 None:intergenic 35.0%
CTTGAAGACAAAAGAATCCA+TGG - chr4_2:58536621-58536640 Msa0610700:intron 35.0%
GATAGGGAAAGAAATTGAAC+AGG - chr4_2:58536812-58536831 Msa0610700:intron 35.0%
GAAATTGAACAGGATCTTTC+TGG - chr4_2:58536822-58536841 Msa0610700:intron 35.0%
ATTGGTGAATGGTAAAACCT+CGG + chr4_2:58537068-58537087 None:intergenic 35.0%
! TTGAAAATTTTGTGTCCTGC+AGG - chr4_2:58537130-58537149 Msa0610700:intron 35.0%
! TGAAAATTTTGTGTCCTGCA+GGG - chr4_2:58537131-58537150 Msa0610700:intron 35.0%
CAACTCAATTACACGCTTAT+AGG + chr4_2:58537467-58537486 None:intergenic 35.0%
! ATTGAGTTGCTTATCCAAAG+AGG - chr4_2:58537478-58537497 Msa0610700:intron 35.0%
! TTGAGTTGCTTATCCAAAGA+GGG - chr4_2:58537479-58537498 Msa0610700:intron 35.0%
TTTAGTTGTTGCATGTTACG+GGG + chr4_2:58537772-58537791 None:intergenic 35.0%
GTTTAGTTGTTGCATGTTAC+GGG + chr4_2:58537773-58537792 None:intergenic 35.0%
TGAGATGTTAGATGCATTTG+TGG + chr4_2:58537813-58537832 None:intergenic 35.0%
CAATGTGAATCCATTTGCAA+AGG - chr4_2:58537831-58537850 Msa0610700:intron 35.0%
CTTTGCAAACTTGCAACAAT+GGG + chr4_2:58537932-58537951 None:intergenic 35.0%
TCTTTGCAAACTTGCAACAA+TGG + chr4_2:58537933-58537952 None:intergenic 35.0%
TTTCAACACACATCATGGTT+GGG + chr4_2:58537957-58537976 None:intergenic 35.0%
ATTTCAACACACATCATGGT+TGG + chr4_2:58537958-58537977 None:intergenic 35.0%
AACCATGATGTGTGTTGAAA+TGG - chr4_2:58537957-58537976 Msa0610700:intron 35.0%
AATTTAACTAGAGCAGAGGA+TGG + chr4_2:58538021-58538040 None:intergenic 35.0%
GATCAATTTAACTAGAGCAG+AGG + chr4_2:58538025-58538044 None:intergenic 35.0%
CTCTAGTTAAATTGATCCCT+GGG - chr4_2:58538028-58538047 Msa0610700:intron 35.0%
! CATGTCCGTTAATTTTGAAC+TGG - chr4_2:58538060-58538079 Msa0610700:intron 35.0%
GCATCCCAGTTCAAAATTAA+CGG + chr4_2:58538068-58538087 None:intergenic 35.0%
! TAATTTTGAACTGGGATGCT+AGG - chr4_2:58538069-58538088 Msa0610700:intron 35.0%
GACTATCAAATTGACAACCT+TGG - chr4_2:58538337-58538356 Msa0610700:intron 35.0%
GCATTGTTACGTAATAACCA+AGG + chr4_2:58538357-58538376 None:intergenic 35.0%
TTACGTAACAATGCTGTTGT+TGG - chr4_2:58538363-58538382 Msa0610700:intron 35.0%
! AGACCATTATTGGTTGGATA+GGG + chr4_2:58538438-58538457 None:intergenic 35.0%
! AAGACCATTATTGGTTGGAT+AGG + chr4_2:58538439-58538458 None:intergenic 35.0%
ATCCAACCAATAATGGTCTT+TGG - chr4_2:58538439-58538458 Msa0610700:intron 35.0%
AACCAAAGACCATTATTGGT+TGG + chr4_2:58538444-58538463 None:intergenic 35.0%
GCAAAACCAAAGACCATTAT+TGG + chr4_2:58538448-58538467 None:intergenic 35.0%
GATTTACCTATAGACGTTCT+TGG - chr4_2:58538683-58538702 Msa0610700:intron 35.0%
AAACATCACATGGATAGTGT+AGG + chr4_2:58539133-58539152 None:intergenic 35.0%
CTTATCTGTGTAAAATCACG+AGG - chr4_2:58539239-58539258 Msa0610700:CDS 35.0%
!!! ACGAGGACAAGTTTTAGATT+AGG - chr4_2:58539256-58539275 Msa0610700:intron 35.0%
TGATTAAGAGTTGCTTGAGA+TGG - chr4_2:58539631-58539650 Msa0610700:intron 35.0%
GCTTGAGATGGATAATTGTT+CGG - chr4_2:58539643-58539662 Msa0610700:intron 35.0%
TCTACTTCTGTCTATGTTTC+AGG - chr4_2:58539779-58539798 Msa0610700:CDS 35.0%
CTACTTCTGTCTATGTTTCA+GGG - chr4_2:58539780-58539799 Msa0610700:CDS 35.0%
TGTCTATGTTTCAGGGTATA+TGG - chr4_2:58539787-58539806 Msa0610700:CDS 35.0%
GTCACTCTTAATGGAATATG+AGG - chr4_2:58539852-58539871 Msa0610700:intron 35.0%
AGCTATAAGTTCCGAAATGA+AGG + chr4_2:58539904-58539923 None:intergenic 35.0%
TTCATTTCGGAACTTATAGC+TGG - chr4_2:58539903-58539922 Msa0610700:intron 35.0%
! TTGATATTTTCGACCTGGGT+GGG - chr4_2:58536413-58536432 Msa0610700:three_prime_UTR 40.0%
! TTTCCTTCTAGGAAACATGC+AGG - chr4_2:58536543-58536562 Msa0610700:exon 40.0%
ATTGTGAGATTGAGATTGGG+AGG + chr4_2:58536733-58536752 None:intergenic 40.0%
GATCTTTCTGGATTCAAGTG+CGG - chr4_2:58536834-58536853 Msa0610700:intron 40.0%
TTGGTGAATGGTAAAACCTC+GGG + chr4_2:58537067-58537086 None:intergenic 40.0%
! GAAAATTTTGTGTCCTGCAG+GGG - chr4_2:58537132-58537151 Msa0610700:intron 40.0%
TTAAGGAGTAGGAGCAAGTT+TGG - chr4_2:58537245-58537264 Msa0610700:intron 40.0%
CAAATGATAGAGGCTTTCTG+TGG + chr4_2:58537586-58537605 None:intergenic 40.0%
TAATCAGTTAGTTAGTGCGC+TGG - chr4_2:58537666-58537685 Msa0610700:intron 40.0%
TGTGAATCCATTTGCAAAGG+AGG - chr4_2:58537834-58537853 Msa0610700:intron 40.0%
GTGAATCCATTTGCAAAGGA+GGG - chr4_2:58537835-58537854 Msa0610700:intron 40.0%
TGAATCCATTTGCAAAGGAG+GGG - chr4_2:58537836-58537855 Msa0610700:intron 40.0%
! TGCCATTTCAACACACATCA+TGG + chr4_2:58537962-58537981 None:intergenic 40.0%
AGTTGAATTGAGCTCCAATG+AGG - chr4_2:58537982-58538001 Msa0610700:intron 40.0%
GCTCTAGTTAAATTGATCCC+TGG - chr4_2:58538027-58538046 Msa0610700:intron 40.0%
AGATTACACTAGACCAAACC+AGG + chr4_2:58538096-58538115 None:intergenic 40.0%
CGTGGTATCCAATTTGTGTT+TGG - chr4_2:58538217-58538236 Msa0610700:intron 40.0%
GAGTTTACAAATCGAGCCTA+CGG - chr4_2:58538294-58538313 Msa0610700:intron 40.0%
TAAACTGGTGAAATCTCCGT+AGG + chr4_2:58538313-58538332 None:intergenic 40.0%
TGGAACATACAACAGATTGG+GGG + chr4_2:58538415-58538434 None:intergenic 40.0%
GTGGAACATACAACAGATTG+GGG + chr4_2:58538416-58538435 None:intergenic 40.0%
GGTGGAACATACAACAGATT+GGG + chr4_2:58538417-58538436 None:intergenic 40.0%
TTTATGCGCATGTACGTTCA+AGG - chr4_2:58538877-58538896 Msa0610700:intron 40.0%
ACAGCACTACATGTCAAGAT+TGG - chr4_2:58539098-58539117 Msa0610700:intron 40.0%
ATCACATGGATAGTGTAGGA+AGG + chr4_2:58539129-58539148 None:intergenic 40.0%
AGTGGTTGAGAAACATCACA+TGG + chr4_2:58539143-58539162 None:intergenic 40.0%
ATCAGCTCTTCTTAGATACG+AGG + chr4_2:58539314-58539333 None:intergenic 40.0%
TCGTATCTAAGAAGAGCTGA+TGG - chr4_2:58539313-58539332 Msa0610700:intron 40.0%
CTTGTCCACAATGTAGGTAA+TGG - chr4_2:58539359-58539378 Msa0610700:CDS 40.0%
AACTGCCATTACCTACATTG+TGG + chr4_2:58539367-58539386 None:intergenic 40.0%
CAGTAGTGCAATCATTTGCA+AGG + chr4_2:58539674-58539693 None:intergenic 40.0%
AGAGTGGTTGTCACTCTTAA+TGG - chr4_2:58539843-58539862 Msa0610700:CDS 40.0%
! GCTTTGATTCGCCTTCATTT+CGG - chr4_2:58539890-58539909 Msa0610700:intron 40.0%
CACAGTTGCATTGCATTCAT+AGG + chr4_2:58539981-58540000 None:intergenic 40.0%
! GTTGATATTTTCGACCTGGG+TGG - chr4_2:58536412-58536431 Msa0610700:three_prime_UTR 45.0%
ACACCTGCATGTTTCCTAGA+AGG + chr4_2:58536549-58536568 None:intergenic 45.0%
! ATGGTTTTCTGGGCCCATTT+GGG + chr4_2:58536661-58536680 None:intergenic 45.0%
! TGGTAGAGCGATGGTTTTCT+GGG + chr4_2:58536671-58536690 None:intergenic 45.0%
TTTGTAAGGTGGTAGAGCGA+TGG + chr4_2:58536680-58536699 None:intergenic 45.0%
CTGTCATCTTGTTACTCCCA+AGG - chr4_2:58536705-58536724 Msa0610700:intron 45.0%
TTGAGATTGGGAGGAACCTT+GGG + chr4_2:58536724-58536743 None:intergenic 45.0%
ATTGAGATTGGGAGGAACCT+TGG + chr4_2:58536725-58536744 None:intergenic 45.0%
TTGCTTATCCAAAGAGGGTC+TGG - chr4_2:58537484-58537503 Msa0610700:intron 45.0%
AGCTCATTCATGAGCTAAGG+AGG + chr4_2:58537709-58537728 None:intergenic 45.0%
GGTAGCTCATTCATGAGCTA+AGG + chr4_2:58537712-58537731 None:intergenic 45.0%
TGAGCTCCAATGAGGAAAGT+CGG - chr4_2:58537990-58538009 Msa0610700:intron 45.0%
TAACTAGAGCAGAGGATGGT+GGG + chr4_2:58538017-58538036 None:intergenic 45.0%
TTAACTAGAGCAGAGGATGG+TGG + chr4_2:58538018-58538037 None:intergenic 45.0%
GGACATGTTTACGAATCCCA+GGG + chr4_2:58538047-58538066 None:intergenic 45.0%
GGGTGGAACATACAACAGAT+TGG + chr4_2:58538418-58538437 None:intergenic 45.0%
! CCATTATTGGTTGGATAGGG+TGG + chr4_2:58538435-58538454 None:intergenic 45.0%
CCACCCTATCCAACCAATAA+TGG - chr4_2:58538432-58538451 Msa0610700:intron 45.0%
TGTAGGTCATGATGACATGC+CGG - chr4_2:58538473-58538492 Msa0610700:intron 45.0%
GAAAGCTTAACATGGGAACC+TGG - chr4_2:58538636-58538655 Msa0610700:intron 45.0%
AGTAAACGATGTTACCTGCC+AGG + chr4_2:58538657-58538676 None:intergenic 45.0%
GCTTGACCAAGAACGTCTAT+AGG + chr4_2:58538692-58538711 None:intergenic 45.0%
GCATTGCTTGTCCACAATGT+AGG - chr4_2:58539353-58539372 Msa0610700:CDS 45.0%
!! GTATATGGCTTTGTGAGCAC+CGG - chr4_2:58539802-58539821 Msa0610700:CDS 45.0%
!! TATATGGCTTTGTGAGCACC+GGG - chr4_2:58539803-58539822 Msa0610700:CDS 45.0%
!!! TTTATTTTTATAAATAAACA+CGG + chr4_2:58539547-58539566 None:intergenic 5.0%
TTGTCAGATGGAGATGGGTG+TGG - chr4_2:58536342-58536361 Msa0610700:three_prime_UTR 50.0%
! GCAAGTGCTACTCACACGTT+TGG + chr4_2:58536377-58536396 None:intergenic 50.0%
AACTTAAGTGACACCCACCC+AGG + chr4_2:58536429-58536448 None:intergenic 50.0%
TGCTGCGCTTTCACGCTTAA+TGG + chr4_2:58536595-58536614 None:intergenic 50.0%
TGAATCCACCGCTCCCAAAT+GGG - chr4_2:58536645-58536664 Msa0610700:intron 50.0%
! GATGGTTTTCTGGGCCCATT+TGG + chr4_2:58536662-58536681 None:intergenic 50.0%
! GTGGTAGAGCGATGGTTTTC+TGG + chr4_2:58536672-58536691 None:intergenic 50.0%
GCTCTACCACCTTACAAACG+CGG - chr4_2:58536682-58536701 Msa0610700:intron 50.0%
AGATGACAGCCGCGTTTGTA+AGG + chr4_2:58536694-58536713 None:intergenic 50.0%
CCTCGGGAACAATTCGATTG+AGG + chr4_2:58537051-58537070 None:intergenic 50.0%
CCTCAATCGAATTGTTCCCG+AGG - chr4_2:58537048-58537067 Msa0610700:intron 50.0%
! ACCTTGGAAGCACACTCTAG+AGG - chr4_2:58537163-58537182 Msa0610700:intron 50.0%
! CCTTGGAAGCACACTCTAGA+GGG - chr4_2:58537164-58537183 Msa0610700:intron 50.0%
GTGTTCCCCTCCTTTGCAAA+TGG + chr4_2:58537844-58537863 None:intergenic 50.0%
CGGACATGTTTACGAATCCC+AGG + chr4_2:58538048-58538067 None:intergenic 50.0%
TCAAGTGCCCGTGTGATGTA+AGG + chr4_2:58539204-58539223 None:intergenic 50.0%
TTCGTGAGGTAGGATGATCC+CGG + chr4_2:58539824-58539843 None:intergenic 50.0%
TCATCCTACCTCACGAAGAG+TGG - chr4_2:58539827-58539846 Msa0610700:CDS 50.0%
ACAACCACTCTTCGTGAGGT+AGG + chr4_2:58539834-58539853 None:intergenic 50.0%
AGTGACAACCACTCTTCGTG+AGG + chr4_2:58539838-58539857 None:intergenic 50.0%
!! CACTTGCTGCCCAGTCGTTT+TGG - chr4_2:58536390-58536409 Msa0610700:three_prime_UTR 55.0%
CTGAATCCACCGCTCCCAAA+TGG - chr4_2:58536644-58536663 Msa0610700:intron 55.0%
TTTCTGGGCCCATTTGGGAG+CGG + chr4_2:58536656-58536675 None:intergenic 55.0%
TGACAGCCGCGTTTGTAAGG+TGG + chr4_2:58536691-58536710 None:intergenic 55.0%
GTGTGCTTCCAAGGTGCAGA+TGG + chr4_2:58537158-58537177 None:intergenic 55.0%
!! CCCTCTAGAGTGTGCTTCCA+AGG + chr4_2:58537167-58537186 None:intergenic 55.0%
GGCTAGATCCAGACCCTCTT+TGG + chr4_2:58537495-58537514 None:intergenic 55.0%
! GTGGGACCGACTTTCCTCAT+TGG + chr4_2:58537999-58538018 None:intergenic 55.0%
TGAACTGGGATGCTAGGTCC+TGG - chr4_2:58538075-58538094 Msa0610700:intron 55.0%
TGGGATGCTAGGTCCTGGTT+TGG - chr4_2:58538080-58538099 Msa0610700:intron 55.0%
GCTTAACATGGGAACCTGGC+AGG - chr4_2:58538640-58538659 Msa0610700:intron 55.0%
! GGGAGCGGTGGATTCAGCCA+TGG + chr4_2:58536641-58536660 None:intergenic 65.0%
AAGGTGCAGATGGCCCCTGC+AGG + chr4_2:58537148-58537167 None:intergenic 65.0%
TGCAGGGGCCATCTGCACCT+TGG - chr4_2:58537147-58537166 Msa0610700:intron 65.0%
CTGGGCCCATTTGGGAGCGG+TGG + chr4_2:58536653-58536672 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 58536288 58540130 58536288 ID=Msa0610700;Name=Msa0610700
chr4_2 mRNA 58536288 58540130 58536288 ID=Msa0610700-mRNA-1;Parent=Msa0610700;Name=Msa0610700-mRNA-1;_AED=0.29;_eAED=0.29;_QI=61|1|1|1|1|1|8|258|204
chr4_2 exon 58536288 58536617 58536288 ID=Msa0610700-mRNA-1:exon:15443;Parent=Msa0610700-mRNA-1
chr4_2 exon 58537757 58537799 58537757 ID=Msa0610700-mRNA-1:exon:15442;Parent=Msa0610700-mRNA-1
chr4_2 exon 58537886 58537940 58537886 ID=Msa0610700-mRNA-1:exon:15441;Parent=Msa0610700-mRNA-1
chr4_2 exon 58539233 58539266 58539233 ID=Msa0610700-mRNA-1:exon:15440;Parent=Msa0610700-mRNA-1
chr4_2 exon 58539349 58539443 58539349 ID=Msa0610700-mRNA-1:exon:15439;Parent=Msa0610700-mRNA-1
chr4_2 exon 58539545 58539605 58539545 ID=Msa0610700-mRNA-1:exon:15438;Parent=Msa0610700-mRNA-1
chr4_2 exon 58539692 58539864 58539692 ID=Msa0610700-mRNA-1:exon:15437;Parent=Msa0610700-mRNA-1
chr4_2 exon 58539988 58540130 58539988 ID=Msa0610700-mRNA-1:exon:15436;Parent=Msa0610700-mRNA-1
chr4_2 five_prime_UTR 58540070 58540130 58540070 ID=Msa0610700-mRNA-1:five_prime_utr;Parent=Msa0610700-mRNA-1
chr4_2 CDS 58539988 58540069 58539988 ID=Msa0610700-mRNA-1:cds;Parent=Msa0610700-mRNA-1
chr4_2 CDS 58539692 58539864 58539692 ID=Msa0610700-mRNA-1:cds;Parent=Msa0610700-mRNA-1
chr4_2 CDS 58539545 58539605 58539545 ID=Msa0610700-mRNA-1:cds;Parent=Msa0610700-mRNA-1
chr4_2 CDS 58539349 58539443 58539349 ID=Msa0610700-mRNA-1:cds;Parent=Msa0610700-mRNA-1
chr4_2 CDS 58539233 58539266 58539233 ID=Msa0610700-mRNA-1:cds;Parent=Msa0610700-mRNA-1
chr4_2 CDS 58537886 58537940 58537886 ID=Msa0610700-mRNA-1:cds;Parent=Msa0610700-mRNA-1
chr4_2 CDS 58537757 58537799 58537757 ID=Msa0610700-mRNA-1:cds;Parent=Msa0610700-mRNA-1
chr4_2 CDS 58536546 58536617 58536546 ID=Msa0610700-mRNA-1:cds;Parent=Msa0610700-mRNA-1
chr4_2 three_prime_UTR 58536288 58536545 58536288 ID=Msa0610700-mRNA-1:three_prime_utr;Parent=Msa0610700-mRNA-1
Gene Sequence

>Msa0610700

ATGGAGATGGGTGTGGAAAGCATAACCAAACGTGTGAGTAGCACTTGCTGCCCAGTCGTTTTGGTTGATATTTTCGACCTGGGAAACATGCAGGTGTCATCACTGTGCGTAGCAAAGTTTCCATTAAGCGTGAAAGCGCAGCACCCAACCTTGAAGACAAAAGAATCCATGGCTGAATCCACCGCTCCCAAATGGGCCCAGAAAACCATCGCTCTACCACCTTACAAACGCGGCTGTCATCTTGTTACTCCCAAGATAGGGAAAGAAATTGAACAGGATCTTTCTGGATTCAAGTGCGGTCTCGCCCATCTCTTCTTGCAGCATACAAGTGCTTCTCTTACTATCAATGAAAATTATGACACTGATGTTCGCGATGATACCGAAACATTCCTCAATCGAATTGTTCCCGAGGGGCCATCTGCACCTTGGAAGCACACTCTAGAGGGTCATGATGACATGCCGGCTCATATTAAGTCATCAATGTTTGGCTGTGCACTCACGATACCAATTACAAATGGAAAGCTTAACATGGGAACCTGGCAGGGTATATGGCTTTGTGAGCACCGGGATCATCCTACCTCACGAAGAGTGGTTGTCACTCTTAATGGAATATGA

Protein sequence

>Msa0610700

MEMGVESITKRVSSTCCPVVLVDIFDLGNMQVSSLCVAKFPLSVKAQHPTLKTKESMAESTAPKWAQKTIALPPYKRGCHLVTPKIGKEIEQDLSGFKCGLAHLFLQHTSASLTINENYDTDVRDDTETFLNRIVPEGPSAPWKHTLEGHDDMPAHIKSSMFGCALTIPITNGKLNMGTWQGIWLCEHRDHPTSRRVVVTLNGI*