AlfalfaGEDB | Msa0217460

M. sativa cultivar zhongmu-4 / Msa0217460

KEGG: K10405
GO: GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464
PFAM: PF00225.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217460	XP_003596607.1	99.080	761	7	0	1	761	1	761	0.0	1553

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217460	sp\|P46875\|KN14N_ARATH	65.495	768	240	6	1	759	1	752	0.0	1013

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217460	G7IHD4	99.080	761	7	0	1	761	1	761	0.0	1553

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0034210	Msa0217460	0.815932	7.176242e-52	-8.615850e-47
Msa0128310	Msa0217460	0.815357	9.634574e-52	-8.615850e-47
Msa0174440	Msa0217460	0.814714	1.338658e-51	-8.615850e-47
Msa0217460	Msa0257300	0.852210	5.359459e-61	-8.615850e-47
Msa0217460	Msa0296600	0.889600	2.095343e-73	-8.615850e-47
Msa0217460	Msa0334990	0.854278	1.368880e-61	-8.615850e-47
Msa0217460	Msa0563940	0.851122	1.090278e-60	-8.615850e-47
Msa0217460	Msa0700460	0.842984	1.851779e-58	-8.615850e-47
Msa0217460	Msa1216090	0.820872	5.451276e-53	-8.615850e-47
Msa0217460	Msa1228630	0.811061	8.450390e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217460	MtrunA17_Chr2g0319271	99.080	761	7	0	1	761	1	761	0.0	1553
Msa0217460	MtrunA17_Chr4g0042061	80.971	762	142	3	1	761	34	793	0.0	1278
Msa0217460	MtrunA17_Chr2g0280421	58.246	764	296	7	6	760	37	786	0.0	859
Msa0217460	MtrunA17_Chr4g0049011	60.980	551	189	6	214	750	94	632	0.0	648
Msa0217460	MtrunA17_Chr1g0191851	44.527	402	197	7	352	747	97	478	1.36e-95	314
Msa0217460	MtrunA17_Chr2g0312631	44.652	374	191	5	374	747	359	716	7.34e-92	310
Msa0217460	MtrunA17_Chr7g0272871	46.174	379	178	9	376	747	99	458	1.88e-90	299
Msa0217460	MtrunA17_Chr1g0195111	44.032	377	173	9	387	751	384	734	1.15e-88	300
Msa0217460	MtrunA17_Chr5g0411971	39.362	470	260	8	283	747	279	728	7.54e-88	299
Msa0217460	MtrunA17_Chr5g0421521	37.773	503	280	11	248	747	231	703	8.49e-87	295

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217460	AT5G54670.1	65.495	768	240	6	1	759	1	752	0.0	1013
Msa0217460	AT5G54670.2	65.495	768	240	6	1	759	1	752	0.0	1013
Msa0217460	AT4G27180.1	63.979	769	241	6	1	759	1	743	0.0	983
Msa0217460	AT4G27180.2	63.979	769	241	6	1	759	1	743	0.0	983
Msa0217460	AT5G54670.3	66.572	703	213	4	64	759	5	692	0.0	949
Msa0217460	AT4G21270.1	63.194	739	259	3	34	760	55	792	0.0	924
Msa0217460	AT4G05190.2	61.765	748	273	3	25	760	30	776	0.0	912
Msa0217460	AT4G05190.1	62.129	742	268	3	31	760	49	789	0.0	911
Msa0217460	AT1G72250.1	41.264	538	269	16	233	747	311	824	1.17e-98	331
Msa0217460	AT1G72250.2	44.804	433	205	10	328	747	422	833	2.39e-98	330

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Find 168 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTATACAATGATGGGC+AGG	0.553444	2_1:+64296551	Msa0217460:CDS
AAACTAGTATTGTGGGGCCA+TGG	0.523961	2_1:-64293196	None:intergenic
AAACTCAACAATCAAATTGA+TGG	0.403638	2_1:+64299137	Msa0217460:three_prime_UTR
AAAGATTCTTCAGAAAAGTC+TGG	0.416172	2_1:+64295281	Msa0217460:CDS
AAAGCTTACATACCTACTTC+AGG	0.523943	2_1:+64297870	Msa0217460:CDS
AAATTTACAGGTGTCAATGT+TGG	0.492826	2_1:+64296771	Msa0217460:intron
AACACCTTCAAATTGTTCAA+AGG	0.492760	2_1:+64293323	Msa0217460:five_prime_UTR
AAGCGAGTTGCACCAAGTGA+GGG	0.611835	2_1:+64295199	Msa0217460:CDS
AAGTGATGTTATATTTGCGT+TGG	0.563963	2_1:+64297813	Msa0217460:CDS
AAGTGCTCTTGATGGTTATA+AGG	0.358591	2_1:+64296142	Msa0217460:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGTGTACAGATTTGTATT+TGG	-	chr2_1:64293130-64293149	None:intergenic	30.0%
AACACCTTCAAATTGTTCAA+AGG	+	chr2_1:64293323-64293342	Msa0217460:five_prime_UTR	30.0%
TGTACCTTTGAACAATTTGA+AGG	-	chr2_1:64293330-64293349	None:intergenic	30.0%
CATAGAGTGAAGAAGAAAAA+TGG	+	chr2_1:64293503-64293522	Msa0217460:exon	30.0%
TGTTGAATGAGAAATCCAAA+AGG	+	chr2_1:64293670-64293689	Msa0217460:CDS	30.0%
GACAGATTTAATTACAAGGT+TGG	+	chr2_1:64293696-64293715	Msa0217460:intron	30.0%
TATCAAGTTATTAGCAGTGT+TGG	+	chr2_1:64293879-64293898	Msa0217460:intron	30.0%
GAGATTACAAGATCAAACTA+TGG	-	chr2_1:64293940-64293959	None:intergenic	30.0%
CAACAAAAATGTGTGGAAAT+AGG	+	chr2_1:64294243-64294262	Msa0217460:CDS	30.0%
TTTGCAAGAGAAATTAGTGA+AGG	+	chr2_1:64294430-64294449	Msa0217460:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	64292967	64299239	64292967	ID=Msa0217460;Name=Msa0217460
chr2_1	mRNA	64292967	64299239	64292967	ID=Msa0217460-mRNA-1;Parent=Msa0217460;Name=Msa0217460-mRNA-1;_AED=0.07;_eAED=0.07;_QI=426\|1\|1\|1\|0.93\|0.88\|17\|439\|761
chr2_1	exon	64292967	64293344	64292967	ID=Msa0217460-mRNA-1:exon:17822;Parent=Msa0217460-mRNA-1
chr2_1	exon	64293474	64293713	64293474	ID=Msa0217460-mRNA-1:exon:17823;Parent=Msa0217460-mRNA-1
chr2_1	exon	64294120	64294264	64294120	ID=Msa0217460-mRNA-1:exon:17824;Parent=Msa0217460-mRNA-1
chr2_1	exon	64294360	64294469	64294360	ID=Msa0217460-mRNA-1:exon:17825;Parent=Msa0217460-mRNA-1
chr2_1	exon	64294555	64294674	64294555	ID=Msa0217460-mRNA-1:exon:17826;Parent=Msa0217460-mRNA-1
chr2_1	exon	64294865	64295047	64294865	ID=Msa0217460-mRNA-1:exon:17827;Parent=Msa0217460-mRNA-1
chr2_1	exon	64295137	64295346	64295137	ID=Msa0217460-mRNA-1:exon:17828;Parent=Msa0217460-mRNA-1
chr2_1	exon	64295433	64295507	64295433	ID=Msa0217460-mRNA-1:exon:17829;Parent=Msa0217460-mRNA-1
chr2_1	exon	64295589	64295735	64295589	ID=Msa0217460-mRNA-1:exon:17830;Parent=Msa0217460-mRNA-1
chr2_1	exon	64295823	64295961	64295823	ID=Msa0217460-mRNA-1:exon:17831;Parent=Msa0217460-mRNA-1
chr2_1	exon	64296054	64296163	64296054	ID=Msa0217460-mRNA-1:exon:17832;Parent=Msa0217460-mRNA-1
chr2_1	exon	64296514	64296675	64296514	ID=Msa0217460-mRNA-1:exon:17833;Parent=Msa0217460-mRNA-1
chr2_1	exon	64296781	64297001	64296781	ID=Msa0217460-mRNA-1:exon:17834;Parent=Msa0217460-mRNA-1
chr2_1	exon	64297198	64297279	64297198	ID=Msa0217460-mRNA-1:exon:17835;Parent=Msa0217460-mRNA-1
chr2_1	exon	64297558	64297662	64297558	ID=Msa0217460-mRNA-1:exon:17836;Parent=Msa0217460-mRNA-1
chr2_1	exon	64297787	64297891	64297787	ID=Msa0217460-mRNA-1:exon:17837;Parent=Msa0217460-mRNA-1
chr2_1	exon	64298621	64299239	64298621	ID=Msa0217460-mRNA-1:exon:17838;Parent=Msa0217460-mRNA-1
chr2_1	five_prime_UTR	64292967	64293344	64292967	ID=Msa0217460-mRNA-1:five_prime_utr;Parent=Msa0217460-mRNA-1
chr2_1	five_prime_UTR	64293474	64293521	64293474	ID=Msa0217460-mRNA-1:five_prime_utr;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64293522	64293713	64293522	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64294120	64294264	64294120	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64294360	64294469	64294360	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64294555	64294674	64294555	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64294865	64295047	64294865	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64295137	64295346	64295137	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64295433	64295507	64295433	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64295589	64295735	64295589	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64295823	64295961	64295823	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64296054	64296163	64296054	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64296514	64296675	64296514	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64296781	64297001	64296781	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64297198	64297279	64297198	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64297558	64297662	64297558	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64297787	64297891	64297787	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	CDS	64298621	64298800	64298621	ID=Msa0217460-mRNA-1:cds;Parent=Msa0217460-mRNA-1
chr2_1	three_prime_UTR	64298801	64299239	64298801	ID=Msa0217460-mRNA-1:three_prime_utr;Parent=Msa0217460-mRNA-1

Gene Sequence

>Msa0217460

ATGGTGGGAACTCCAATGAATGGAAGAAGGCTTTCTTTTGGATTTGGAAATGGTGGACATGATCTTGGTCCAAGTAGTACTCCACCAAGCAATGCTGGTTCTGATTATGGAAGCTATATAGATTTCACAAGAGAAGATGTTGAGGCTTTGTTGAATGAGAAATCCAAAAGGAAAGACAGATTTAATTACAAGGAACGATGTGAAAATATGATTGATTATATAAAAAGGCTCAAGGTTTGCATTAGATGGTTCCAAGATCTTGAGTTGAGCTACTCATTAGAGCAAGAGAAGTTGAAGAGTTCATTGGAATTGTCCCAACAAAAATGTGTGGAAATAGAGTTGCTGCTCAAAATCAAGGAAGAGGAATTGAATTCAATTATTACAGAAATGAGAAGGAATTGCACTTCTTTGCAAGAGAAATTAGTGAAGGAAGAAACAGAAAAGGCGGCTGCAATGGAATCACTTGTTAAAGAAAGAGAGGCTAGGCTTGACTTTGAAAGGTCGCAGACGACACTATCAGAAGATCTCGGTAGAGCTCAACGTGAGCTTGAAACTGCAAATCAGAAGATAGTATCACTCAATGACATGTATAAGCGATTACAAGAGTATATAACAAGCTTGCAGCAGTACAATGGAAAACTTCATTCTGAGCTTTCTACAGTGGAAGGTGATCTAAAGCGTGTAGAGAAAGAGAAAGCGACCGTAGTGGAAAATCTTACAATGTTAAAGGGCCAACTTGCTCTGTCTATGGCTTCTCAAGAAGAAGCTACAAAACAGAAGGATGCTTTTGCTAGTGAAGTTACGTCCCTTCGAAGCGAGTTGCACCAAGTGAGGGATGATCGAGACCGCCAAATTTCTCAAGTGCAAACTTTAAGTACTGAAATAGTGAAGTTTAAAGATTCTTCAGAAAAGTCTGGTTCCGAAGTGAACAACTTGACCATTAAAACAAATGAGTTGGAGACAAAATGTACTTTGCAAGATAGTCATATAAAGGAATTACAAGAGAAGCTAACGATTGCAGAGAACAAACTTGAGGTTTGTGATATATCCGCAATTGAGACAAGAACAGAATTCGAAGGACAACAAAAACTCGTAAATGAGTTACAAAAACGATTGGCAGACGCGGAATACAAACTTATAGAAGGGGAGAAGCTGAGGAAAGAATTACATAATACAATTTTGGAACTGAAAGGGAACATTCGTGTGTTCTGTAGAGTGCGGCCTTTGTTACCTGATGAAAGTTGCAGCTCAGAAGGCAAGATTATATCTTATCCTACCTCCATGGAAGCTTCTGGACGAGGCATTGAATTGACACAAAACGGCCAAAAACATTCTTTCACATTTGATAGAGTTTTTGCACCTGATGCATTACAAGAAGAAGTATTTACAGAAATTTCACAGCTTGTGCAAAGTGCTCTTGATGGTTATAAGGTTTGCATTTTTGCGTATGGTCAGACAGGTTCAGGGAAAACCTATACAATGATGGGCAGGCCTGGACATCCCGGAGAAAAGGGTTTGATACCTCGTTCACTTGAACAAATATTTCAAACAAGACAGTCTCAGCAACCGCAAGGCTGGAAATATGAAATGCAGGTGTCAATGTTGGAAATATACAATGAAACGATTCGTGATTTGTTGGCTACAACAAATAAGTCCCCATCAGACGCAACCCGTGCAGAAAATGGCACTCCTGGGAAGCAATACTCAATCAAGCATGATGCCAGTGGAAATACTCTTGTTTCTGATCTTACCGTGGTAGATGTTGAGAGTGTAAAAGAGGTCGCGTTTCTTTTAAATCAAGCAGCAAGCAGCAGATCTGTGGGAAAAACTCAGATGAACGAACAATCTTCAAGAAGTCATTTCGTATTCACTCTTCGAATATACGGTGTAAATGAGAGCACGGACCAACAAGTACAAGGTGTTCTAAATCTCATTGATCTTGCTGGGAGTGAGCGTCTTTCAAGGAGTGGCTCAACTGGAGACCGATTGAAAGAAACTCAAGCAATAAATAAAAGTCTATCATCATTAAGTGATGTTATATTTGCGTTGGCCAAGAAGGAGGATCATATTCCATTCAGGAACTCAAAGCTTACATACCTACTTCAGCCTTGTCTAGGTGGAGACTCAAAGACATTAATGTTTGTAAACATCGCTCCTGACCAAGCTTCATCTGGAGAGTCACTATGCTCGCTCCGGTTTGCTTCAAGAGTAAATGCTTGTGAAATCGGGACACCTCGCCGCACCACCAACGGTCGCCCTACAGAATCTCGCTTGAGCTATTTCTAA

Protein sequence

>Msa0217460

MVGTPMNGRRLSFGFGNGGHDLGPSSTPPSNAGSDYGSYIDFTREDVEALLNEKSKRKDRFNYKERCENMIDYIKRLKVCIRWFQDLELSYSLEQEKLKSSLELSQQKCVEIELLLKIKEEELNSIITEMRRNCTSLQEKLVKEETEKAAAMESLVKEREARLDFERSQTTLSEDLGRAQRELETANQKIVSLNDMYKRLQEYITSLQQYNGKLHSELSTVEGDLKRVEKEKATVVENLTMLKGQLALSMASQEEATKQKDAFASEVTSLRSELHQVRDDRDRQISQVQTLSTEIVKFKDSSEKSGSEVNNLTIKTNELETKCTLQDSHIKELQEKLTIAENKLEVCDISAIETRTEFEGQQKLVNELQKRLADAEYKLIEGEKLRKELHNTILELKGNIRVFCRVRPLLPDESCSSEGKIISYPTSMEASGRGIELTQNGQKHSFTFDRVFAPDALQEEVFTEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGHPGEKGLIPRSLEQIFQTRQSQQPQGWKYEMQVSMLEIYNETIRDLLATTNKSPSDATRAENGTPGKQYSIKHDASGNTLVSDLTVVDVESVKEVAFLLNQAASSRSVGKTQMNEQSSRSHFVFTLRIYGVNESTDQQVQGVLNLIDLAGSERLSRSGSTGDRLKETQAINKSLSSLSDVIFALAKKEDHIPFRNSKLTYLLQPCLGGDSKTLMFVNIAPDQASSGESLCSLRFASRVNACEIGTPRRTTNGRPTESRLSYF*